2023-09-25T13:08:54,475 Created temporary directory: /tmp/pip-build-tracker-sy0mtq99 2023-09-25T13:08:54,476 Initialized build tracking at /tmp/pip-build-tracker-sy0mtq99 2023-09-25T13:08:54,477 Created build tracker: /tmp/pip-build-tracker-sy0mtq99 2023-09-25T13:08:54,477 Entered build tracker: /tmp/pip-build-tracker-sy0mtq99 2023-09-25T13:08:54,478 Created temporary directory: /tmp/pip-wheel-j5vl02nf 2023-09-25T13:08:54,481 Created temporary directory: /tmp/pip-ephem-wheel-cache-mcres2qi 2023-09-25T13:08:54,503 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T13:08:54,506 2 location(s) to search for versions of seldompy: 2023-09-25T13:08:54,506 * https://pypi.org/simple/seldompy/ 2023-09-25T13:08:54,506 * https://www.piwheels.org/simple/seldompy/ 2023-09-25T13:08:54,507 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-09-25T13:08:54,508 Getting page https://pypi.org/simple/seldompy/ 2023-09-25T13:08:54,510 Found index url https://pypi.org/simple/ 2023-09-25T13:08:54,775 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-09-25T13:08:54,778 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-25T13:08:54,778 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-09-25T13:08:54,779 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-25T13:08:54,779 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2023-09-25T13:08:54,780 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-25T13:08:54,781 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2023-09-25T13:08:54,782 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-09-25T13:08:54,782 Getting page https://www.piwheels.org/simple/seldompy/ 2023-09-25T13:08:54,784 Found index url https://www.piwheels.org/simple/ 2023-09-25T13:08:54,944 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-09-25T13:08:54,945 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-09-25T13:08:54,946 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-09-25T13:08:54,964 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-09-25T13:08:54,982 Collecting seldompy==0.9.8 2023-09-25T13:08:54,984 Created temporary directory: /tmp/pip-unpack-4jj78rbl 2023-09-25T13:08:55,123 Downloading SELDOMpy-0.9.8.tar.gz (260 kB) 2023-09-25T13:08:55,456 Added seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz to build tracker '/tmp/pip-build-tracker-sy0mtq99' 2023-09-25T13:08:55,457 Running setup.py (path:/tmp/pip-wheel-j5vl02nf/seldompy_250165cba7e149918286bb8cfff6a9aa/setup.py) egg_info for package seldompy 2023-09-25T13:08:55,458 Created temporary directory: /tmp/pip-pip-egg-info-hk84f8a3 2023-09-25T13:08:55,459 Preparing metadata (setup.py): started 2023-09-25T13:08:55,460 Running command python setup.py egg_info 2023-09-25T13:08:56,172 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:08:56,172 !! 2023-09-25T13:08:56,174 ******************************************************************************** 2023-09-25T13:08:56,174 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:08:56,175 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:08:56,175 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:08:56,176 or your builds will no longer be supported. 2023-09-25T13:08:56,177 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:08:56,177 ******************************************************************************** 2023-09-25T13:08:56,178 !! 2023-09-25T13:08:56,179 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:08:56,705 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:08:56,706 !! 2023-09-25T13:08:56,707 ******************************************************************************** 2023-09-25T13:08:56,707 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:08:56,708 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:08:56,709 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:08:56,709 or your builds will no longer be supported. 2023-09-25T13:08:56,710 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:08:56,710 ******************************************************************************** 2023-09-25T13:08:56,712 !! 2023-09-25T13:08:56,712 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:08:56,745 running egg_info 2023-09-25T13:08:56,747 creating /tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info 2023-09-25T13:08:56,775 writing /tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/PKG-INFO 2023-09-25T13:08:56,779 writing dependency_links to /tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/dependency_links.txt 2023-09-25T13:08:56,781 writing requirements to /tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/requires.txt 2023-09-25T13:08:56,782 writing top-level names to /tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/top_level.txt 2023-09-25T13:08:56,783 writing manifest file '/tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/SOURCES.txt' 2023-09-25T13:08:56,889 reading manifest file '/tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/SOURCES.txt' 2023-09-25T13:08:56,891 reading manifest template 'MANIFEST.in' 2023-09-25T13:08:56,897 adding license file 'LICENSE.txt' 2023-09-25T13:08:56,902 writing manifest file '/tmp/pip-pip-egg-info-hk84f8a3/SELDOMpy.egg-info/SOURCES.txt' 2023-09-25T13:08:57,048 Preparing metadata (setup.py): finished with status 'done' 2023-09-25T13:08:57,052 Source in /tmp/pip-wheel-j5vl02nf/seldompy_250165cba7e149918286bb8cfff6a9aa has version 0.9.8, which satisfies requirement seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz 2023-09-25T13:08:57,053 Removed seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz from build tracker '/tmp/pip-build-tracker-sy0mtq99' 2023-09-25T13:08:57,058 Created temporary directory: /tmp/pip-unpack-y6issy0b 2023-09-25T13:08:57,059 Created temporary directory: /tmp/pip-unpack-xbpjaugs 2023-09-25T13:08:57,070 Building wheels for collected packages: seldompy 2023-09-25T13:08:57,074 Created temporary directory: /tmp/pip-wheel-vnhqrdqz 2023-09-25T13:08:57,075 Building wheel for seldompy (setup.py): started 2023-09-25T13:08:57,076 Destination directory: /tmp/pip-wheel-vnhqrdqz 2023-09-25T13:08:57,077 Running command python setup.py bdist_wheel 2023-09-25T13:08:57,753 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:08:57,753 !! 2023-09-25T13:08:57,754 ******************************************************************************** 2023-09-25T13:08:57,754 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:08:57,755 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:08:57,756 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:08:57,756 or your builds will no longer be supported. 2023-09-25T13:08:57,757 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:08:57,758 ******************************************************************************** 2023-09-25T13:08:57,759 !! 2023-09-25T13:08:57,759 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:08:58,269 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:08:58,269 !! 2023-09-25T13:08:58,270 ******************************************************************************** 2023-09-25T13:08:58,271 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:08:58,271 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:08:58,272 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:08:58,273 or your builds will no longer be supported. 2023-09-25T13:08:58,274 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:08:58,275 ******************************************************************************** 2023-09-25T13:08:58,276 !! 2023-09-25T13:08:58,276 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:08:58,311 running bdist_wheel 2023-09-25T13:08:58,413 running build 2023-09-25T13:08:58,414 running build_py 2023-09-25T13:08:58,441 creating build 2023-09-25T13:08:58,441 creating build/lib.linux-armv7l-cpython-311 2023-09-25T13:08:58,442 creating build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-25T13:08:58,443 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-25T13:08:58,446 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,447 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,448 running egg_info 2023-09-25T13:08:58,508 writing SELDOMpy.egg-info/PKG-INFO 2023-09-25T13:08:58,511 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-09-25T13:08:58,513 writing requirements to SELDOMpy.egg-info/requires.txt 2023-09-25T13:08:58,514 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-09-25T13:08:58,542 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-25T13:08:58,548 reading manifest template 'MANIFEST.in' 2023-09-25T13:08:58,553 adding license file 'LICENSE.txt' 2023-09-25T13:08:58,560 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-25T13:08:58,563 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-09-25T13:08:58,564 !! 2023-09-25T13:08:58,565 ******************************************************************************** 2023-09-25T13:08:58,566 ############################ 2023-09-25T13:08:58,566 # Package would be ignored # 2023-09-25T13:08:58,567 ############################ 2023-09-25T13:08:58,568 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-09-25T13:08:58,568 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,570 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,570 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-09-25T13:08:58,571 to the `packages` configuration field. 2023-09-25T13:08:58,572 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,573 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,573 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,575 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-09-25T13:08:58,576 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-09-25T13:08:58,576 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,576 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,577 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,578 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,580 even if it does not contain any `.py` files. 2023-09-25T13:08:58,581 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,581 directory, all directories are treated like packages. 2023-09-25T13:08:58,582 ******************************************************************************** 2023-09-25T13:08:58,583 !! 2023-09-25T13:08:58,583 check.warn(importable) 2023-09-25T13:08:58,584 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-09-25T13:08:58,584 !! 2023-09-25T13:08:58,586 ******************************************************************************** 2023-09-25T13:08:58,586 ############################ 2023-09-25T13:08:58,587 # Package would be ignored # 2023-09-25T13:08:58,587 ############################ 2023-09-25T13:08:58,588 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-09-25T13:08:58,588 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,589 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,590 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-09-25T13:08:58,590 to the `packages` configuration field. 2023-09-25T13:08:58,592 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,593 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,594 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,596 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-09-25T13:08:58,596 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-09-25T13:08:58,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,598 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,600 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,602 even if it does not contain any `.py` files. 2023-09-25T13:08:58,603 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,603 directory, all directories are treated like packages. 2023-09-25T13:08:58,604 ******************************************************************************** 2023-09-25T13:08:58,605 !! 2023-09-25T13:08:58,605 check.warn(importable) 2023-09-25T13:08:58,605 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-09-25T13:08:58,606 !! 2023-09-25T13:08:58,607 ******************************************************************************** 2023-09-25T13:08:58,607 ############################ 2023-09-25T13:08:58,608 # Package would be ignored # 2023-09-25T13:08:58,608 ############################ 2023-09-25T13:08:58,609 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-09-25T13:08:58,609 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,610 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,611 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-09-25T13:08:58,611 to the `packages` configuration field. 2023-09-25T13:08:58,612 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,613 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,614 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,616 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-09-25T13:08:58,617 already explicitly excluding 'SELDOMpy.functions' via 2023-09-25T13:08:58,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,618 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,618 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,619 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,620 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,622 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,622 even if it does not contain any `.py` files. 2023-09-25T13:08:58,623 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,624 directory, all directories are treated like packages. 2023-09-25T13:08:58,624 ******************************************************************************** 2023-09-25T13:08:58,625 !! 2023-09-25T13:08:58,626 check.warn(importable) 2023-09-25T13:08:58,626 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-09-25T13:08:58,627 !! 2023-09-25T13:08:58,628 ******************************************************************************** 2023-09-25T13:08:58,628 ############################ 2023-09-25T13:08:58,629 # Package would be ignored # 2023-09-25T13:08:58,629 ############################ 2023-09-25T13:08:58,630 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-09-25T13:08:58,630 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,631 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,632 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-09-25T13:08:58,632 to the `packages` configuration field. 2023-09-25T13:08:58,633 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,634 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,634 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,635 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,637 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-09-25T13:08:58,637 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-09-25T13:08:58,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,639 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,640 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,641 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,643 even if it does not contain any `.py` files. 2023-09-25T13:08:58,643 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,644 directory, all directories are treated like packages. 2023-09-25T13:08:58,645 ******************************************************************************** 2023-09-25T13:08:58,646 !! 2023-09-25T13:08:58,646 check.warn(importable) 2023-09-25T13:08:58,646 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-09-25T13:08:58,647 !! 2023-09-25T13:08:58,649 ******************************************************************************** 2023-09-25T13:08:58,649 ############################ 2023-09-25T13:08:58,650 # Package would be ignored # 2023-09-25T13:08:58,650 ############################ 2023-09-25T13:08:58,651 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-09-25T13:08:58,651 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,653 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,653 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-09-25T13:08:58,654 to the `packages` configuration field. 2023-09-25T13:08:58,655 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,655 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,656 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,657 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,659 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-09-25T13:08:58,660 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-09-25T13:08:58,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,661 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,662 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,663 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,664 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,665 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,666 even if it does not contain any `.py` files. 2023-09-25T13:08:58,667 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,667 directory, all directories are treated like packages. 2023-09-25T13:08:58,668 ******************************************************************************** 2023-09-25T13:08:58,669 !! 2023-09-25T13:08:58,669 check.warn(importable) 2023-09-25T13:08:58,670 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-09-25T13:08:58,670 !! 2023-09-25T13:08:58,671 ******************************************************************************** 2023-09-25T13:08:58,671 ############################ 2023-09-25T13:08:58,672 # Package would be ignored # 2023-09-25T13:08:58,672 ############################ 2023-09-25T13:08:58,673 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-09-25T13:08:58,674 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,675 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,675 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-09-25T13:08:58,676 to the `packages` configuration field. 2023-09-25T13:08:58,677 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,677 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,678 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,681 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-09-25T13:08:58,681 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-09-25T13:08:58,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,683 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,684 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,687 even if it does not contain any `.py` files. 2023-09-25T13:08:58,687 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,688 directory, all directories are treated like packages. 2023-09-25T13:08:58,689 ******************************************************************************** 2023-09-25T13:08:58,690 !! 2023-09-25T13:08:58,690 check.warn(importable) 2023-09-25T13:08:58,691 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-09-25T13:08:58,691 !! 2023-09-25T13:08:58,692 ******************************************************************************** 2023-09-25T13:08:58,693 ############################ 2023-09-25T13:08:58,693 # Package would be ignored # 2023-09-25T13:08:58,694 ############################ 2023-09-25T13:08:58,694 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-09-25T13:08:58,695 but it is absent from setuptools' `packages` configuration. 2023-09-25T13:08:58,696 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-25T13:08:58,697 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-09-25T13:08:58,698 to the `packages` configuration field. 2023-09-25T13:08:58,699 Alternatively, you can also rely on setuptools' discovery methods 2023-09-25T13:08:58,700 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-25T13:08:58,701 instead of `find_packages(...)`/`find:`). 2023-09-25T13:08:58,703 You can read more about "package discovery" on setuptools documentation page: 2023-09-25T13:08:58,704 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-25T13:08:58,707 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-09-25T13:08:58,709 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-09-25T13:08:58,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-25T13:08:58,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-25T13:08:58,713 combination with a more fine grained `package-data` configuration. 2023-09-25T13:08:58,714 You can read more about "package data files" on setuptools documentation page: 2023-09-25T13:08:58,715 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-25T13:08:58,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-25T13:08:58,717 even if it does not contain any `.py` files. 2023-09-25T13:08:58,717 On the other hand, currently there is no concept of package data 2023-09-25T13:08:58,718 directory, all directories are treated like packages. 2023-09-25T13:08:58,718 ******************************************************************************** 2023-09-25T13:08:58,719 !! 2023-09-25T13:08:58,720 check.warn(importable) 2023-09-25T13:08:58,720 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples 2023-09-25T13:08:58,721 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-25T13:08:58,721 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-25T13:08:58,722 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-25T13:08:58,722 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-25T13:08:58,723 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-25T13:08:58,723 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-25T13:08:58,724 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-25T13:08:58,724 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-25T13:08:58,725 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,725 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,726 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,726 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,726 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,727 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,727 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,728 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,728 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,729 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,729 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-25T13:08:58,730 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,730 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,730 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,731 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,731 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,732 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,732 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,733 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,733 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,734 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,735 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,735 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,735 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,736 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,736 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,737 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,737 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,738 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,738 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,739 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,739 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,740 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,740 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,741 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,741 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,742 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,742 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,743 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,743 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,744 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,744 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,746 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,748 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,750 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,752 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,754 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,756 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,758 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,760 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,762 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,764 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,766 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,768 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,770 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,772 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,774 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,776 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,778 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,780 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,783 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,785 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,788 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,790 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,792 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,794 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,796 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,799 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,802 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:58,804 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include 2023-09-25T13:08:58,805 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,806 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,808 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,810 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,812 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,814 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,816 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,818 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,820 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-25T13:08:58,821 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes 2023-09-25T13:08:58,822 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,823 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,827 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,829 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,832 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,834 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,836 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,839 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,841 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,843 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,845 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,847 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,850 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-25T13:08:58,852 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-25T13:08:58,853 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-25T13:08:58,856 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,857 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,859 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,861 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,864 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,866 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,868 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,871 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,874 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,876 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,879 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,882 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,885 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,887 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-25T13:08:58,890 running build_ext 2023-09-25T13:08:59,429 building 'hello' extension 2023-09-25T13:08:59,430 creating build/temp.linux-armv7l-cpython-311 2023-09-25T13:08:59,431 creating build/temp.linux-armv7l-cpython-311/SELDOMpy 2023-09-25T13:08:59,431 creating build/temp.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-25T13:08:59,434 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model.o 2023-09-25T13:08:59,597 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-09-25T13:08:59,598 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-25T13:08:59,599 225 | }; 2023-09-25T13:08:59,599 | ^ 2023-09-25T13:09:00,088 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model_stats.o 2023-09-25T13:09:00,129 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-09-25T13:09:00,130 1 | #pragma once 2023-09-25T13:09:00,131 | ^~~~ 2023-09-25T13:09:00,196 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_problem.o 2023-09-25T13:09:00,342 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-09-25T13:09:00,343 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-25T13:09:00,343 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-25T13:09:00,344 | 2023-09-25T13:09:00,344 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-25T13:09:00,345 134 | #pragma omp for schedule(dynamic,1) private(i) 2023-09-25T13:09:00,345 | 2023-09-25T13:09:00,346 SELDOMpy/src/AMIGO_problem.c:127:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-25T13:09:00,346 127 | int counter=0; 2023-09-25T13:09:00,347 | ^~~~~~~ 2023-09-25T13:09:00,348 SELDOMpy/src/AMIGO_problem.c:126:22: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-25T13:09:00,349 126 | int i, j, k, n_exps, n_times, n_obs; 2023-09-25T13:09:00,349 | ^~~~~~ 2023-09-25T13:09:00,350 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-09-25T13:09:00,350 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-25T13:09:00,351 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-25T13:09:00,352 | 2023-09-25T13:09:00,352 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-25T13:09:00,353 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2023-09-25T13:09:00,354 | 2023-09-25T13:09:00,355 SELDOMpy/src/AMIGO_problem.c:182:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-25T13:09:00,356 182 | int counter=0; 2023-09-25T13:09:00,356 | ^~~~~~~ 2023-09-25T13:09:00,357 SELDOMpy/src/AMIGO_problem.c:181:53: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-25T13:09:00,358 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-25T13:09:00,358 | ^~~~ 2023-09-25T13:09:00,359 SELDOMpy/src/AMIGO_problem.c:181:30: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-25T13:09:00,359 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-25T13:09:00,360 | ^~~~~~ 2023-09-25T13:09:00,752 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/anODEModel.o 2023-09-25T13:09:00,891 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-09-25T13:09:00,892 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-09-25T13:09:00,892 23 | int countBin=0; 2023-09-25T13:09:00,893 | ^~~~~~~~ 2023-09-25T13:09:00,894 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-09-25T13:09:00,895 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-09-25T13:09:00,895 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-09-25T13:09:00,896 | ^~~~~~~~~~~ 2023-09-25T13:09:01,050 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea.o 2023-09-25T13:09:01,205 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-09-25T13:09:01,207 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-09-25T13:09:01,207 2461 | int is, retval; 2023-09-25T13:09:01,208 | ^~~~~~ 2023-09-25T13:09:01,220 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-09-25T13:09:01,223 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-25T13:09:01,224 2957 | int flag, retval; 2023-09-25T13:09:01,225 | ^~~~ 2023-09-25T13:09:01,756 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-09-25T13:09:01,758 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T13:09:01,759 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-25T13:09:01,759 | ^~~~ 2023-09-25T13:09:01,761 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T13:09:01,762 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-25T13:09:01,762 | ^~~ 2023-09-25T13:09:03,155 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-09-25T13:09:03,156 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T13:09:03,157 1263 | int sign, flag; 2023-09-25T13:09:03,157 | ^~~~ 2023-09-25T13:09:03,555 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea_io.o 2023-09-25T13:09:04,091 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodes.o 2023-09-25T13:09:04,287 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-09-25T13:09:04,290 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-09-25T13:09:04,291 4328 | if (count1 <= 2) 2023-09-25T13:09:04,291 | ^~ 2023-09-25T13:09:04,294 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-09-25T13:09:04,295 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-09-25T13:09:04,295 | ^~ 2023-09-25T13:09:04,605 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-09-25T13:09:04,612 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-09-25T13:09:04,613 8850 | realtype Deltap, rDeltap; 2023-09-25T13:09:04,614 | ^~~~~~~ 2023-09-25T13:09:04,615 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-09-25T13:09:04,621 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-09-25T13:09:04,622 8961 | fprintf(stderr, msg); 2023-09-25T13:09:04,623 | ^~~ 2023-09-25T13:09:11,446 cc1: some warnings being treated as errors 2023-09-25T13:09:11,454 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-25T13:09:11,633 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-25T13:09:11,646 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-25T13:09:11,646 exec(compile('"'"''"'"''"'"' 2023-09-25T13:09:11,646 # This is -- a caller that pip uses to run setup.py 2023-09-25T13:09:11,646 # 2023-09-25T13:09:11,646 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-25T13:09:11,646 # import from `distutils.core` to work with newer packaging standards. 2023-09-25T13:09:11,646 # - It provides a clear error message when setuptools is not installed. 2023-09-25T13:09:11,646 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-25T13:09:11,646 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-25T13:09:11,646 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-25T13:09:11,646 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-25T13:09:11,646 import os, sys, tokenize 2023-09-25T13:09:11,646 2023-09-25T13:09:11,646 try: 2023-09-25T13:09:11,646 import setuptools 2023-09-25T13:09:11,646 except ImportError as error: 2023-09-25T13:09:11,646 print( 2023-09-25T13:09:11,646 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-25T13:09:11,646 "the build environment.", 2023-09-25T13:09:11,646 file=sys.stderr, 2023-09-25T13:09:11,646 ) 2023-09-25T13:09:11,646 sys.exit(1) 2023-09-25T13:09:11,646 2023-09-25T13:09:11,646 __file__ = %r 2023-09-25T13:09:11,646 sys.argv[0] = __file__ 2023-09-25T13:09:11,646 2023-09-25T13:09:11,646 if os.path.exists(__file__): 2023-09-25T13:09:11,646 filename = __file__ 2023-09-25T13:09:11,646 with tokenize.open(__file__) as f: 2023-09-25T13:09:11,646 setup_py_code = f.read() 2023-09-25T13:09:11,646 else: 2023-09-25T13:09:11,646 filename = "" 2023-09-25T13:09:11,646 setup_py_code = "from setuptools import setup; setup()" 2023-09-25T13:09:11,646 2023-09-25T13:09:11,646 exec(compile(setup_py_code, filename, "exec")) 2023-09-25T13:09:11,646 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-j5vl02nf/seldompy_250165cba7e149918286bb8cfff6a9aa/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-vnhqrdqz[/] 2023-09-25T13:09:11,647 [bold magenta]cwd[/]: /tmp/pip-wheel-j5vl02nf/seldompy_250165cba7e149918286bb8cfff6a9aa/ 2023-09-25T13:09:11,647 Building wheel for seldompy (setup.py): finished with status 'error' 2023-09-25T13:09:11,648 ERROR: Failed building wheel for seldompy 2023-09-25T13:09:11,650 Running setup.py clean for seldompy 2023-09-25T13:09:11,651 Running command python setup.py clean 2023-09-25T13:09:12,384 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:09:12,384 !! 2023-09-25T13:09:12,385 ******************************************************************************** 2023-09-25T13:09:12,385 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:09:12,386 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:09:12,387 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:09:12,388 or your builds will no longer be supported. 2023-09-25T13:09:12,389 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:09:12,389 ******************************************************************************** 2023-09-25T13:09:12,390 !! 2023-09-25T13:09:12,391 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:09:12,888 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-25T13:09:12,889 !! 2023-09-25T13:09:12,890 ******************************************************************************** 2023-09-25T13:09:12,890 Usage of dash-separated 'description-file' will not be supported in future 2023-09-25T13:09:12,891 versions. Please use the underscore name 'description_file' instead. 2023-09-25T13:09:12,892 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-25T13:09:12,892 or your builds will no longer be supported. 2023-09-25T13:09:12,893 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-25T13:09:12,893 ******************************************************************************** 2023-09-25T13:09:12,894 !! 2023-09-25T13:09:12,895 opt = self.warn_dash_deprecation(opt, section) 2023-09-25T13:09:12,921 running clean 2023-09-25T13:09:12,967 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-25T13:09:12,971 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-25T13:09:13,012 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-25T13:09:13,012 'build/scripts-3.11' does not exist -- can't clean it 2023-09-25T13:09:13,013 removing 'build' 2023-09-25T13:09:13,157 Failed to build seldompy 2023-09-25T13:09:13,158 ERROR: Failed to build one or more wheels 2023-09-25T13:09:13,159 Exception information: 2023-09-25T13:09:13,159 Traceback (most recent call last): 2023-09-25T13:09:13,159 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-25T13:09:13,159 status = run_func(*args) 2023-09-25T13:09:13,159 ^^^^^^^^^^^^^^^ 2023-09-25T13:09:13,159 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-25T13:09:13,159 return func(self, options, args) 2023-09-25T13:09:13,159 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-25T13:09:13,159 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-25T13:09:13,159 raise CommandError("Failed to build one or more wheels") 2023-09-25T13:09:13,159 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-25T13:09:13,162 Removed build tracker: '/tmp/pip-build-tracker-sy0mtq99'