2023-09-25T16:45:20,188 Created temporary directory: /tmp/pip-build-tracker-odzw0ri9 2023-09-25T16:45:20,189 Initialized build tracking at /tmp/pip-build-tracker-odzw0ri9 2023-09-25T16:45:20,190 Created build tracker: /tmp/pip-build-tracker-odzw0ri9 2023-09-25T16:45:20,190 Entered build tracker: /tmp/pip-build-tracker-odzw0ri9 2023-09-25T16:45:20,191 Created temporary directory: /tmp/pip-wheel-0twhjh4r 2023-09-25T16:45:20,194 Created temporary directory: /tmp/pip-ephem-wheel-cache-mobwug9i 2023-09-25T16:45:20,215 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:45:20,219 2 location(s) to search for versions of viennarna: 2023-09-25T16:45:20,219 * https://pypi.org/simple/viennarna/ 2023-09-25T16:45:20,219 * https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:45:20,219 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2023-09-25T16:45:20,220 Getting page https://pypi.org/simple/viennarna/ 2023-09-25T16:45:20,221 Found index url https://pypi.org/simple/ 2023-09-25T16:45:20,435 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2023-09-25T16:45:20,445 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2023-09-25T16:45:20,447 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2023-09-25T16:45:20,447 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,448 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,449 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,449 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,450 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,450 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,451 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,452 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,452 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,453 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,454 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,454 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,455 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,455 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,456 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,456 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,457 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,458 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,458 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,459 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,459 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,460 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,461 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,461 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,462 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2023-09-25T16:45:20,463 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,463 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,464 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,464 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,465 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,465 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,466 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,467 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/59/aa/b2280bcc389c924dc72a72c1ae8028fe695c4a245f41b2ab1eb8681d91bd/ViennaRNA-2.6.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,467 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/b4/70c9716977d6e0019246b03d258802c568d6fa5b3cd0987deeac778dc262/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,468 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/75/d9bbc8fb67bd585dc719c34ac4439a2bed0a92015c3548f9727b968612d4/ViennaRNA-2.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,468 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/0f/0e8ab6395909f664f52e969308655ba73a5e76e0f39892bdae7da5348f1c/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,469 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c0/8b/042597cb78def0a5d3b60fd7d38b68b840831409035ce6a42a3910642b2a/ViennaRNA-2.6.3-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,470 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/61/7b341f99bd59f00ba5e6646a86409530c24802961ec2394d258eb3faffd5/ViennaRNA-2.6.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,470 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c8/0d/8b2999d3263215abd044039a2a7bede2211569f73da3015e2be1566d63db/ViennaRNA-2.6.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,470 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c2/34/0dbb99607323989dd0c085a539ce0a256c5f3f0d9acc10dda20a11b7e81e/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,471 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/cf/6f/95878bb677b6accc109fc47a6b94e1e590b3fefecce2fd8f241e477f3433/ViennaRNA-2.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,471 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3c/8b/9bbe373989b50478d4b0440c6e5262330fa653426c5b305a353e2a58113a/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,472 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/46/3a/f24fda11d092c8f67ce31b2ecd790ae788045df5a3ab4497b1fd57d8272e/ViennaRNA-2.6.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,472 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/85/3291c8de1dc632df62d74f99ffc7d5de990b293d61e14afbd72ca54f0776/ViennaRNA-2.6.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,473 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,474 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,474 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,475 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,475 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2023-09-25T16:45:20,477 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2023-09-25T16:45:20,477 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:45:20,478 Getting page https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:45:20,479 Found index url https://www.piwheels.org/simple/ 2023-09-25T16:45:20,639 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2023-09-25T16:45:20,640 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2023-09-25T16:45:20,641 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2023-09-25T16:45:20,659 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2023-09-25T16:45:20,677 Collecting viennarna==2.6.2 2023-09-25T16:45:20,680 Created temporary directory: /tmp/pip-unpack-0aaxba12 2023-09-25T16:45:21,216 Downloading ViennaRNA-2.6.2.tar.gz (4.8 MB) 2023-09-25T16:45:27,336 Added viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz to build tracker '/tmp/pip-build-tracker-odzw0ri9' 2023-09-25T16:45:27,341 Created temporary directory: /tmp/pip-build-env-w2vvn05r 2023-09-25T16:45:27,346 Installing build dependencies: started 2023-09-25T16:45:27,347 Running command pip subprocess to install build dependencies 2023-09-25T16:45:28,714 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T16:45:29,211 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:45:30,780 Collecting setuptools>=61.0 2023-09-25T16:45:30,782 Obtaining dependency information for setuptools>=61.0 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-25T16:45:30,788 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-25T16:45:30,956 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-25T16:45:33,390 Installing collected packages: setuptools 2023-09-25T16:45:35,813 Successfully installed setuptools-68.2.2 2023-09-25T16:45:36,378 Installing build dependencies: finished with status 'done' 2023-09-25T16:45:36,381 Getting requirements to build wheel: started 2023-09-25T16:45:36,382 Running command Getting requirements to build wheel 2023-09-25T16:45:37,215 running egg_info 2023-09-25T16:45:37,219 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:45:37,223 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:45:37,226 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T16:45:37,246 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:37,691 reading manifest template 'MANIFEST.in' 2023-09-25T16:45:38,517 adding license file 'COPYING' 2023-09-25T16:45:38,525 adding license file 'AUTHORS' 2023-09-25T16:45:38,584 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:38,700 Getting requirements to build wheel: finished with status 'done' 2023-09-25T16:45:38,708 Installing backend dependencies: started 2023-09-25T16:45:38,709 Running command pip subprocess to install backend dependencies 2023-09-25T16:45:40,463 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-25T16:45:41,070 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-25T16:45:41,618 Collecting wheel 2023-09-25T16:45:41,645 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-25T16:45:43,900 Installing collected packages: wheel 2023-09-25T16:45:44,156 Creating /tmp/pip-build-env-w2vvn05r/normal/local/bin 2023-09-25T16:45:44,167 changing mode of /tmp/pip-build-env-w2vvn05r/normal/local/bin/wheel to 755 2023-09-25T16:45:44,193 Successfully installed wheel-0.41.2 2023-09-25T16:45:44,720 Installing backend dependencies: finished with status 'done' 2023-09-25T16:45:44,722 Created temporary directory: /tmp/pip-modern-metadata-ylaw8ho2 2023-09-25T16:45:44,724 Preparing metadata (pyproject.toml): started 2023-09-25T16:45:44,725 Running command Preparing metadata (pyproject.toml) 2023-09-25T16:45:45,553 running dist_info 2023-09-25T16:45:45,558 creating /tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info 2023-09-25T16:45:45,562 writing /tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:45:45,566 writing dependency_links to /tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:45:45,568 writing top-level names to /tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/top_level.txt 2023-09-25T16:45:45,570 writing manifest file '/tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:45,607 reading manifest file '/tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:45,609 reading manifest template 'MANIFEST.in' 2023-09-25T16:45:46,516 adding license file 'COPYING' 2023-09-25T16:45:46,516 adding license file 'AUTHORS' 2023-09-25T16:45:46,562 writing manifest file '/tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:46,565 creating '/tmp/pip-modern-metadata-ylaw8ho2/ViennaRNA-2.6.2.dist-info' 2023-09-25T16:45:46,713 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-25T16:45:46,718 Source in /tmp/pip-wheel-0twhjh4r/viennarna_156b95f34af342f1a930b72a565bbaf8 has version 2.6.2, which satisfies requirement viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz 2023-09-25T16:45:46,719 Removed viennarna==2.6.2 from https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz from build tracker '/tmp/pip-build-tracker-odzw0ri9' 2023-09-25T16:45:46,726 Created temporary directory: /tmp/pip-unpack-5u3_goct 2023-09-25T16:45:46,727 Created temporary directory: /tmp/pip-unpack-rn7jj9yu 2023-09-25T16:45:46,732 Building wheels for collected packages: viennarna 2023-09-25T16:45:46,737 Created temporary directory: /tmp/pip-wheel-nfla95dn 2023-09-25T16:45:46,738 Destination directory: /tmp/pip-wheel-nfla95dn 2023-09-25T16:45:46,741 Building wheel for viennarna (pyproject.toml): started 2023-09-25T16:45:46,742 Running command Building wheel for viennarna (pyproject.toml) 2023-09-25T16:45:48,679 running bdist_wheel 2023-09-25T16:45:48,694 running build 2023-09-25T16:45:48,695 running build_py 2023-09-25T16:45:48,699 creating build 2023-09-25T16:45:48,699 creating build/lib.linux-armv7l-cpython-311 2023-09-25T16:45:48,700 creating build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:45:48,702 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:45:48,704 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2023-09-25T16:45:48,715 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T16:45:48,716 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2023-09-25T16:45:48,719 running egg_info 2023-09-25T16:45:48,722 writing ViennaRNA.egg-info/PKG-INFO 2023-09-25T16:45:48,725 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2023-09-25T16:45:48,727 writing top-level names to ViennaRNA.egg-info/top_level.txt 2023-09-25T16:45:48,736 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:48,769 reading manifest template 'MANIFEST.in' 2023-09-25T16:45:51,211 adding license file 'COPYING' 2023-09-25T16:45:51,212 adding license file 'AUTHORS' 2023-09-25T16:45:51,274 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2023-09-25T16:45:51,328 running build_ext 2023-09-25T16:45:51,334 building 'RNA._RNA' extension 2023-09-25T16:45:51,337 creating build/temp.linux-armv7l-cpython-311 2023-09-25T16:45:51,337 creating build/temp.linux-armv7l-cpython-311/interfaces 2023-09-25T16:45:51,338 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2023-09-25T16:45:51,339 creating build/temp.linux-armv7l-cpython-311/src 2023-09-25T16:45:51,339 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2023-09-25T16:45:51,341 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2023-09-25T16:45:51,342 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2023-09-25T16:45:51,343 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2023-09-25T16:45:51,343 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2023-09-25T16:45:51,344 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops 2023-09-25T16:45:51,345 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2023-09-25T16:45:51,346 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting 2023-09-25T16:45:51,346 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2023-09-25T16:45:51,347 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2023-09-25T16:45:51,348 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2023-09-25T16:45:51,349 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2023-09-25T16:45:51,350 creating build/temp.linux-armv7l-cpython-311/src/cephes 2023-09-25T16:45:51,350 creating build/temp.linux-armv7l-cpython-311/src/json 2023-09-25T16:45:51,351 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.31 2023-09-25T16:45:51,351 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2023-09-25T16:46:05,938 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:05,938 interfaces/Python/RNA_wrap.cpp:7207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,939 7207 | (i >= max_i)) 2023-09-25T16:46:05,940 | ~~^~~~~~~~ 2023-09-25T16:46:05,940 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg____setitem__(const var_array*, int, unsigned char)’: 2023-09-25T16:46:05,941 interfaces/Python/RNA_wrap.cpp:7247:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,942 7247 | (i >= max_i)) 2023-09-25T16:46:05,942 | ~~^~~~~~~~ 2023-09-25T16:46:05,958 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:05,958 interfaces/Python/RNA_wrap.cpp:7326:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,959 7326 | (i >= max_i)) 2023-09-25T16:46:05,960 | ~~^~~~~~~~ 2023-09-25T16:46:05,961 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg____setitem__(const var_array*, int, char)’: 2023-09-25T16:46:05,961 interfaces/Python/RNA_wrap.cpp:7343:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,963 7343 | (i >= max_i)) 2023-09-25T16:46:05,963 | ~~^~~~~~~~ 2023-09-25T16:46:05,980 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:05,981 interfaces/Python/RNA_wrap.cpp:7422:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,981 7422 | (i >= max_i)) 2023-09-25T16:46:05,982 | ~~^~~~~~~~ 2023-09-25T16:46:05,982 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg____setitem__(const var_array*, int, short int)’: 2023-09-25T16:46:05,983 interfaces/Python/RNA_wrap.cpp:7439:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,984 7439 | (i >= max_i)) 2023-09-25T16:46:05,984 | ~~^~~~~~~~ 2023-09-25T16:46:05,994 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:05,995 interfaces/Python/RNA_wrap.cpp:7541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,996 7541 | (i >= max_i)) 2023-09-25T16:46:05,996 | ~~^~~~~~~~ 2023-09-25T16:46:05,997 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg____setitem__(const var_array*, int, unsigned int)’: 2023-09-25T16:46:05,998 interfaces/Python/RNA_wrap.cpp:7558:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:05,998 7558 | (i >= max_i)) 2023-09-25T16:46:05,999 | ~~^~~~~~~~ 2023-09-25T16:46:06,007 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:06,008 interfaces/Python/RNA_wrap.cpp:7637:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:06,009 7637 | (i >= max_i)) 2023-09-25T16:46:06,009 | ~~^~~~~~~~ 2023-09-25T16:46:06,010 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg____setitem__(const var_array*, int, int)’: 2023-09-25T16:46:06,011 interfaces/Python/RNA_wrap.cpp:7654:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:06,012 7654 | (i >= max_i)) 2023-09-25T16:46:06,012 | ~~^~~~~~~~ 2023-09-25T16:46:06,021 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____getitem__(const var_array*, int)’: 2023-09-25T16:46:06,021 interfaces/Python/RNA_wrap.cpp:7733:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:06,022 7733 | (i >= max_i)) 2023-09-25T16:46:06,023 | ~~^~~~~~~~ 2023-09-25T16:46:06,023 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg____setitem__(const var_array*, int, FLT_OR_DBL)’: 2023-09-25T16:46:06,024 interfaces/Python/RNA_wrap.cpp:7750:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:06,025 7750 | (i >= max_i)) 2023-09-25T16:46:06,026 | ~~^~~~~~~~ 2023-09-25T16:46:06,105 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2023-09-25T16:46:06,106 interfaces/Python/RNA_wrap.cpp:8198:21: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,107 8198 | int i; 2023-09-25T16:46:06,107 | ^ 2023-09-25T16:46:06,108 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2023-09-25T16:46:06,108 interfaces/Python/RNA_wrap.cpp:8252:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:46:06,109 8252 | if (pt[0] != pt.size() - 1) 2023-09-25T16:46:06,121 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2023-09-25T16:46:06,121 interfaces/Python/RNA_wrap.cpp:8404:25: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,122 8404 | int i, *idx; 2023-09-25T16:46:06,122 | ^ 2023-09-25T16:46:06,180 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2023-09-25T16:46:06,181 interfaces/Python/RNA_wrap.cpp:9417:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T16:46:06,181 9417 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T16:46:06,182 | ^ 2023-09-25T16:46:06,183 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2023-09-25T16:46:06,184 interfaces/Python/RNA_wrap.cpp:9468:11: warning: unused variable ‘s’ [-Wunused-variable] 2023-09-25T16:46:06,185 9468 | char *s, **tok, **ptr, *struc, *sequence; 2023-09-25T16:46:06,185 | ^ 2023-09-25T16:46:06,194 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2023-09-25T16:46:06,195 interfaces/Python/RNA_wrap.cpp:9721:12: warning: unused variable ‘result’ [-Wunused-variable] 2023-09-25T16:46:06,195 9721 | double result = 0; 2023-09-25T16:46:06,196 | ^~~~~~ 2023-09-25T16:46:06,260 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2023-09-25T16:46:06,260 interfaces/Python/RNA_wrap.cpp:10496:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,261 10496 | int i; 2023-09-25T16:46:06,262 | ^ 2023-09-25T16:46:06,374 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:46:06,375 interfaces/Python/RNA_wrap.cpp:11855:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,376 11855 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:46:06,376 | ^~~~~~~ 2023-09-25T16:46:06,381 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:46:06,382 interfaces/Python/RNA_wrap.cpp:11927:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,383 11927 | PyObject *func, *arglist, *result, *bp, *err; 2023-09-25T16:46:06,383 | ^~~~~~~ 2023-09-25T16:46:06,386 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2023-09-25T16:46:06,387 interfaces/Python/RNA_wrap.cpp:12046:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,388 12046 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:46:06,388 | ^~~~~~~ 2023-09-25T16:46:06,400 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T16:46:06,401 interfaces/Python/RNA_wrap.cpp:12486:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,401 12486 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T16:46:06,402 | ^~~~~~~ 2023-09-25T16:46:06,404 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2023-09-25T16:46:06,405 interfaces/Python/RNA_wrap.cpp:12546:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,405 12546 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2023-09-25T16:46:06,406 | ^~~~~~~ 2023-09-25T16:46:06,408 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2023-09-25T16:46:06,408 interfaces/Python/RNA_wrap.cpp:12606:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,409 12606 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2023-09-25T16:46:06,409 | ^~~~~~~ 2023-09-25T16:46:06,412 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2023-09-25T16:46:06,413 interfaces/Python/RNA_wrap.cpp:12665:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,413 12665 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2023-09-25T16:46:06,414 | ^~~~~~~ 2023-09-25T16:46:06,416 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2023-09-25T16:46:06,417 interfaces/Python/RNA_wrap.cpp:12767:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,418 12767 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2023-09-25T16:46:06,418 | ^~~~~~~ 2023-09-25T16:46:06,421 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2023-09-25T16:46:06,421 interfaces/Python/RNA_wrap.cpp:12853:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,422 12853 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:46:06,423 | ^~~~~~~ 2023-09-25T16:46:06,423 interfaces/Python/RNA_wrap.cpp:12858:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2023-09-25T16:46:06,424 12858 | PyObject *py_structure, *py_energy; 2023-09-25T16:46:06,425 | ^~~~~~~~~ 2023-09-25T16:46:06,426 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(int, int, const char*, float, void*)’: 2023-09-25T16:46:06,427 interfaces/Python/RNA_wrap.cpp:12952:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,427 12952 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:46:06,428 | ^~~~~~~ 2023-09-25T16:46:06,429 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(int, int, const char*, float, float, void*)’: 2023-09-25T16:46:06,430 interfaces/Python/RNA_wrap.cpp:13006:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,431 13006 | PyObject *func, *arglist, *result, *err; 2023-09-25T16:46:06,432 | ^~~~~~~ 2023-09-25T16:46:06,437 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2023-09-25T16:46:06,438 interfaces/Python/RNA_wrap.cpp:13158:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,439 13158 | PyObject *func, *arglist, *result, *pr_list, *err; 2023-09-25T16:46:06,439 | ^~~~~~~ 2023-09-25T16:46:06,442 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2023-09-25T16:46:06,442 interfaces/Python/RNA_wrap.cpp:13317:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,443 13317 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2023-09-25T16:46:06,443 | ^~~~~~~ 2023-09-25T16:46:06,446 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2023-09-25T16:46:06,446 interfaces/Python/RNA_wrap.cpp:13411:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2023-09-25T16:46:06,447 13411 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2023-09-25T16:46:06,447 | ^~~~~~~ 2023-09-25T16:46:06,476 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2023-09-25T16:46:06,476 interfaces/Python/RNA_wrap.cpp:13771:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:46:06,477 13771 | if (j < self->length) 2023-09-25T16:46:06,478 | ~~^~~~~~~~~~~~~~ 2023-09-25T16:46:06,512 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T16:46:06,513 interfaces/Python/RNA_wrap.cpp:14204:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,514 14204 | int i; 2023-09-25T16:46:06,515 | ^ 2023-09-25T16:46:06,517 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2023-09-25T16:46:06,518 interfaces/Python/RNA_wrap.cpp:14248:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,519 14248 | int i; 2023-09-25T16:46:06,519 | ^ 2023-09-25T16:46:06,522 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2023-09-25T16:46:06,523 interfaces/Python/RNA_wrap.cpp:14292:9: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:46:06,523 14292 | int i; 2023-09-25T16:46:06,524 | ^ 2023-09-25T16:46:08,976 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2023-09-25T16:46:08,976 interfaces/Python/RNA_wrap.cpp:52896:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,977 52896 | fail: 2023-09-25T16:46:08,978 | ^~~~ 2023-09-25T16:46:08,978 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2023-09-25T16:46:08,979 interfaces/Python/RNA_wrap.cpp:52916:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,980 52916 | fail: 2023-09-25T16:46:08,980 | ^~~~ 2023-09-25T16:46:08,981 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2023-09-25T16:46:08,982 interfaces/Python/RNA_wrap.cpp:52936:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,982 52936 | fail: 2023-09-25T16:46:08,983 | ^~~~ 2023-09-25T16:46:08,984 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2023-09-25T16:46:08,985 interfaces/Python/RNA_wrap.cpp:52956:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,986 52956 | fail: 2023-09-25T16:46:08,986 | ^~~~ 2023-09-25T16:46:08,987 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2023-09-25T16:46:08,987 interfaces/Python/RNA_wrap.cpp:52976:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,988 52976 | fail: 2023-09-25T16:46:08,988 | ^~~~ 2023-09-25T16:46:08,989 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2023-09-25T16:46:08,989 interfaces/Python/RNA_wrap.cpp:52996:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,990 52996 | fail: 2023-09-25T16:46:08,990 | ^~~~ 2023-09-25T16:46:08,991 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2023-09-25T16:46:08,991 interfaces/Python/RNA_wrap.cpp:53016:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,992 53016 | fail: 2023-09-25T16:46:08,992 | ^~~~ 2023-09-25T16:46:08,993 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2023-09-25T16:46:08,993 interfaces/Python/RNA_wrap.cpp:53036:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,994 53036 | fail: 2023-09-25T16:46:08,994 | ^~~~ 2023-09-25T16:46:08,995 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2023-09-25T16:46:08,995 interfaces/Python/RNA_wrap.cpp:53056:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,996 53056 | fail: 2023-09-25T16:46:08,997 | ^~~~ 2023-09-25T16:46:08,998 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2023-09-25T16:46:08,999 interfaces/Python/RNA_wrap.cpp:53076:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:08,999 53076 | fail: 2023-09-25T16:46:09,000 | ^~~~ 2023-09-25T16:46:09,001 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2023-09-25T16:46:09,001 interfaces/Python/RNA_wrap.cpp:53096:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,002 53096 | fail: 2023-09-25T16:46:09,003 | ^~~~ 2023-09-25T16:46:09,004 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2023-09-25T16:46:09,004 interfaces/Python/RNA_wrap.cpp:53116:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,005 53116 | fail: 2023-09-25T16:46:09,006 | ^~~~ 2023-09-25T16:46:09,006 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2023-09-25T16:46:09,007 interfaces/Python/RNA_wrap.cpp:53136:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,007 53136 | fail: 2023-09-25T16:46:09,008 | ^~~~ 2023-09-25T16:46:09,009 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2023-09-25T16:46:09,009 interfaces/Python/RNA_wrap.cpp:53156:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,010 53156 | fail: 2023-09-25T16:46:09,011 | ^~~~ 2023-09-25T16:46:09,011 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2023-09-25T16:46:09,012 interfaces/Python/RNA_wrap.cpp:53176:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,013 53176 | fail: 2023-09-25T16:46:09,014 | ^~~~ 2023-09-25T16:46:09,014 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2023-09-25T16:46:09,015 interfaces/Python/RNA_wrap.cpp:53196:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,016 53196 | fail: 2023-09-25T16:46:09,017 | ^~~~ 2023-09-25T16:46:09,018 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2023-09-25T16:46:09,018 interfaces/Python/RNA_wrap.cpp:53216:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,019 53216 | fail: 2023-09-25T16:46:09,019 | ^~~~ 2023-09-25T16:46:09,020 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2023-09-25T16:46:09,020 interfaces/Python/RNA_wrap.cpp:53259:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,021 53259 | fail: 2023-09-25T16:46:09,021 | ^~~~ 2023-09-25T16:46:09,022 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2023-09-25T16:46:09,023 interfaces/Python/RNA_wrap.cpp:53279:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,023 53279 | fail: 2023-09-25T16:46:09,024 | ^~~~ 2023-09-25T16:46:09,024 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2023-09-25T16:46:09,025 interfaces/Python/RNA_wrap.cpp:53299:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,025 53299 | fail: 2023-09-25T16:46:09,026 | ^~~~ 2023-09-25T16:46:09,026 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2023-09-25T16:46:09,027 interfaces/Python/RNA_wrap.cpp:53319:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,027 53319 | fail: 2023-09-25T16:46:09,028 | ^~~~ 2023-09-25T16:46:09,028 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2023-09-25T16:46:09,029 interfaces/Python/RNA_wrap.cpp:53339:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,030 53339 | fail: 2023-09-25T16:46:09,031 | ^~~~ 2023-09-25T16:46:09,031 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2023-09-25T16:46:09,032 interfaces/Python/RNA_wrap.cpp:53382:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,033 53382 | fail: 2023-09-25T16:46:09,034 | ^~~~ 2023-09-25T16:46:09,034 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2023-09-25T16:46:09,035 interfaces/Python/RNA_wrap.cpp:53402:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,036 53402 | fail: 2023-09-25T16:46:09,037 | ^~~~ 2023-09-25T16:46:09,037 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2023-09-25T16:46:09,038 interfaces/Python/RNA_wrap.cpp:53422:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,039 53422 | fail: 2023-09-25T16:46:09,040 | ^~~~ 2023-09-25T16:46:09,040 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2023-09-25T16:46:09,041 interfaces/Python/RNA_wrap.cpp:53442:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,042 53442 | fail: 2023-09-25T16:46:09,042 | ^~~~ 2023-09-25T16:46:09,043 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2023-09-25T16:46:09,043 interfaces/Python/RNA_wrap.cpp:53462:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,044 53462 | fail: 2023-09-25T16:46:09,045 | ^~~~ 2023-09-25T16:46:09,045 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2023-09-25T16:46:09,046 interfaces/Python/RNA_wrap.cpp:53482:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,047 53482 | fail: 2023-09-25T16:46:09,048 | ^~~~ 2023-09-25T16:46:09,048 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2023-09-25T16:46:09,049 interfaces/Python/RNA_wrap.cpp:53502:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2023-09-25T16:46:09,050 53502 | fail: 2023-09-25T16:46:09,051 | ^~~~ 2023-09-25T16:46:10,933 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:10,934 interfaces/Python/RNA_wrap.cpp:83907:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:10,935 83907 | PyObject *o, *o2, *o3; 2023-09-25T16:46:10,935 | ^~ 2023-09-25T16:46:10,939 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:10,940 interfaces/Python/RNA_wrap.cpp:83989:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:10,940 83989 | PyObject *o, *o2, *o3; 2023-09-25T16:46:10,941 | ^~ 2023-09-25T16:46:10,945 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:10,945 interfaces/Python/RNA_wrap.cpp:84079:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:10,946 84079 | PyObject *o, *o2, *o3; 2023-09-25T16:46:10,947 | ^~ 2023-09-25T16:46:11,079 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:11,080 interfaces/Python/RNA_wrap.cpp:86339:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:11,080 86339 | PyObject *o, *o2, *o3; 2023-09-25T16:46:11,081 | ^~ 2023-09-25T16:46:11,091 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:11,092 interfaces/Python/RNA_wrap.cpp:86584:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:11,093 86584 | PyObject *o, *o2, *o3; 2023-09-25T16:46:11,093 | ^~ 2023-09-25T16:46:11,105 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:46:11,105 interfaces/Python/RNA_wrap.cpp:86867:19: warning: unused variable ‘o2’ [-Wunused-variable] 2023-09-25T16:46:11,106 86867 | PyObject *o, *o2, *o3; 2023-09-25T16:46:11,107 | ^~ 2023-09-25T16:46:49,455 In file included from /usr/include/c++/12/vector:70, 2023-09-25T16:46:49,456 from interfaces/Python/RNA_wrap.cpp:4006: 2023-09-25T16:46:49,456 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:46:49,457 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:46:49,458 739 | vector<_Tp, _Alloc>:: 2023-09-25T16:46:49,459 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:46:49,459 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:46:49,460 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:46:50,683 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:46:50,683 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:46:50,684 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:46:50,685 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:20,321 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:47:20,322 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:47:20,323 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:47:20,323 | ^ 2023-09-25T16:47:20,330 interfaces/Python/RNA_wrap.cpp:86287:26: note: ‘retval5’ was declared here 2023-09-25T16:47:20,331 86287 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T16:47:20,331 | ^~~~~~~ 2023-09-25T16:47:20,433 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:47:20,434 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:47:20,434 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:47:20,435 | ^ 2023-09-25T16:47:20,442 interfaces/Python/RNA_wrap.cpp:86527:26: note: ‘retval6’ was declared here 2023-09-25T16:47:20,442 86527 | vrna_pbacktrack_mem_t *retval6 ; 2023-09-25T16:47:20,443 | ^~~~~~~ 2023-09-25T16:47:20,557 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:47:20,558 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:47:20,558 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:47:20,559 | ^ 2023-09-25T16:47:20,566 interfaces/Python/RNA_wrap.cpp:86805:26: note: ‘retval7’ was declared here 2023-09-25T16:47:20,567 86805 | vrna_pbacktrack_mem_t *retval7 ; 2023-09-25T16:47:20,567 | ^~~~~~~ 2023-09-25T16:47:58,011 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:47:58,011 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:58,036 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:47:58,036 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:58,053 In file included from /usr/include/c++/12/vector:64: 2023-09-25T16:47:58,054 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:58,055 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5803:22, 2023-09-25T16:47:58,061 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22395:38: 2023-09-25T16:47:58,063 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:58,063 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:47:58,064 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:47:58,134 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:58,177 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4656:30: 2023-09-25T16:47:58,301 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:58,309 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:47:58,313 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:47:58,393 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:58,565 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4671:28: 2023-09-25T16:47:58,577 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:58,637 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:47:58,687 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:47:58,705 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:58,761 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23096:24: 2023-09-25T16:47:58,768 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:58,805 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:47:58,853 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:47:58,875 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:47:58,949 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,002 175 | vector<_Tp, _Alloc>:: 2023-09-25T16:47:59,007 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,049 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:47:59,052 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,184 189 | vector<_Tp, _Alloc>:: 2023-09-25T16:47:59,258 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,315 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,317 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,317 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20: 2023-09-25T16:47:59,318 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,319 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:47:59,320 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,321 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,321 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4760:27: 2023-09-25T16:47:59,322 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,322 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:47:59,323 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,324 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,325 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4772:33: 2023-09-25T16:47:59,325 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,326 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:47:59,327 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,328 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,329 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:47:59,329 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4696:23: 2023-09-25T16:47:59,330 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,331 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:47:59,332 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,333 1780 | std::__iterator_category(__first)); 2023-09-25T16:47:59,334 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,336 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,555 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,555 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4703:22: 2023-09-25T16:47:59,556 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,557 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:47:59,557 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,558 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,558 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:47:59,559 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4706:23: 2023-09-25T16:47:59,560 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,560 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:47:59,561 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,562 1780 | std::__iterator_category(__first)); 2023-09-25T16:47:59,563 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,563 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,564 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:47:59,565 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20, 2023-09-25T16:47:59,565 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5740:21, 2023-09-25T16:47:59,566 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:21857:46: 2023-09-25T16:47:59,567 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:47:59,567 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:47:59,568 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,568 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:47:59,569 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,569 407 | vector<_Tp, _Alloc>:: 2023-09-25T16:47:59,570 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:47:59,570 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:47:59,571 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:47:59,571 523 | vector<_Tp, _Alloc>:: 2023-09-25T16:47:59,572 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,314 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:48:07,315 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,316 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:07,317 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,358 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,359 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:10945:20: 2023-09-25T16:48:07,360 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,361 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:07,361 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:07,428 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,429 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4656:30: 2023-09-25T16:48:07,429 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,430 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:07,431 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:07,431 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,432 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4671:28: 2023-09-25T16:48:07,433 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,434 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:07,435 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:07,508 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,509 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6909:22, 2023-09-25T16:48:07,509 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41543:43: 2023-09-25T16:48:07,510 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,510 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:07,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:07,559 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,560 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42244:24: 2023-09-25T16:48:07,561 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,561 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:07,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:07,604 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:48:07,605 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,606 175 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:07,607 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,618 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:48:07,619 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,620 189 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:07,620 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,621 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,660 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,661 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20: 2023-09-25T16:48:07,662 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,663 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:48:07,663 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,664 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,664 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4760:27: 2023-09-25T16:48:07,665 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,665 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:48:07,666 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,666 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,667 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4772:33: 2023-09-25T16:48:07,668 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,668 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:48:07,669 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,769 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,769 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:48:07,770 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4696:23: 2023-09-25T16:48:07,771 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,772 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:48:07,772 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,773 1780 | std::__iterator_category(__first)); 2023-09-25T16:48:07,774 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,775 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,775 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,776 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4703:22: 2023-09-25T16:48:07,777 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,777 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:48:07,778 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,779 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,779 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2023-09-25T16:48:07,780 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4706:23: 2023-09-25T16:48:07,780 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,781 1779 | _M_range_insert(__pos, __first, __last, 2023-09-25T16:48:07,782 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,782 1780 | std::__iterator_category(__first)); 2023-09-25T16:48:07,783 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,784 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,878 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:07,879 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:4755:20, 2023-09-25T16:48:07,879 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6846:21, 2023-09-25T16:48:07,880 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41005:51: 2023-09-25T16:48:07,880 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:07,881 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:48:07,882 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,929 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:48:07,930 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,930 407 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:07,931 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:07,994 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:48:07,995 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:07,995 523 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:07,996 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,067 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-09-25T16:48:16,068 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:48:16,068 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:48:16,072 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,120 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,213 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:48:16,214 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:8670:31: 2023-09-25T16:48:16,215 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,216 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:48:16,216 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,217 In file included from /usr/include/c++/12/algorithm:61, 2023-09-25T16:48:16,218 from interfaces/Python/RNA_wrap.cpp:4003: 2023-09-25T16:48:16,218 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2023-09-25T16:48:16,219 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,220 4252 | transform(_InputIterator __first, _InputIterator __last, 2023-09-25T16:48:16,220 | ^~~~~~~~~ 2023-09-25T16:48:16,221 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,222 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,222 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:48:16,223 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2023-09-25T16:48:16,223 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2023-09-25T16:48:16,224 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,225 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:48:16,225 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,248 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,249 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:48:16,249 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:9952:20: 2023-09-25T16:48:16,250 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,251 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:48:16,252 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,252 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,253 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:9956:22: 2023-09-25T16:48:16,254 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,254 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:16,255 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:16,595 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,595 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:48:16,596 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:8693:31: 2023-09-25T16:48:16,597 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,598 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:48:16,598 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:16,970 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:16,970 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-09-25T16:48:16,971 inlined from ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*)’ at interfaces/Python/RNA_wrap.cpp:13904:37, 2023-09-25T16:48:16,971 inlined from ‘PyObject* _wrap_fold_compound_bpp(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:83412:40: 2023-09-25T16:48:16,972 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:16,972 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-09-25T16:48:16,973 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:17,342 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:48:17,343 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:48:17,344 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:48:17,345 | ^ 2023-09-25T16:48:17,350 interfaces/Python/RNA_wrap.cpp:83865:26: note: ‘retval3’ was declared here 2023-09-25T16:48:17,351 83865 | vrna_pbacktrack_mem_t *retval3 ; 2023-09-25T16:48:17,352 | ^~~~~~~ 2023-09-25T16:48:17,972 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:48:17,973 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:48:17,974 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:48:17,974 | ^ 2023-09-25T16:48:17,980 interfaces/Python/RNA_wrap.cpp:83942:26: note: ‘retval4’ was declared here 2023-09-25T16:48:17,981 83942 | vrna_pbacktrack_mem_t *retval4 ; 2023-09-25T16:48:17,981 | ^~~~~~~ 2023-09-25T16:48:18,674 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2023-09-25T16:48:18,675 interfaces/Python/RNA_wrap.cpp:1092:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:48:18,675 1092 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2023-09-25T16:48:18,676 | ^ 2023-09-25T16:48:18,684 interfaces/Python/RNA_wrap.cpp:84027:26: note: ‘retval5’ was declared here 2023-09-25T16:48:18,685 84027 | vrna_pbacktrack_mem_t *retval5 ; 2023-09-25T16:48:18,686 | ^~~~~~~ 2023-09-25T16:48:20,754 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:20,756 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14355:24, 2023-09-25T16:48:20,756 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85517:48: 2023-09-25T16:48:20,757 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:20,757 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:20,758 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:20,758 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:20,758 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:14364:24, 2023-09-25T16:48:20,759 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85517:48: 2023-09-25T16:48:20,759 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:20,760 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:20,761 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:21,052 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:48:21,053 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:14335:24, 2023-09-25T16:48:21,054 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:85442:50: 2023-09-25T16:48:21,054 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:21,055 1287 | _M_realloc_insert(end(), __x); 2023-09-25T16:48:21,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:48:32,007 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:32,008 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T16:48:32,008 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5307:18, 2023-09-25T16:48:32,009 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5329:12: 2023-09-25T16:48:32,010 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:32,011 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T16:48:32,011 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:32,012 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:32,012 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T16:48:32,013 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:32,420 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T16:48:32,421 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:79528:51: 2023-09-25T16:48:32,421 interfaces/Python/RNA_wrap.cpp:13589:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:32,422 13589 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:48:32,422 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:32,849 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:32,849 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5805:167, 2023-09-25T16:48:32,850 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22855:54, 2023-09-25T16:48:32,851 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22941:48: 2023-09-25T16:48:32,851 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:32,852 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:48:32,853 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:32,854 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:32,854 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:5806:206, 2023-09-25T16:48:32,855 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:22911:54, 2023-09-25T16:48:32,855 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22958:50: 2023-09-25T16:48:32,856 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:32,857 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:48:32,858 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,139 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:33,139 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4626:15, 2023-09-25T16:48:33,140 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:5743:18, 2023-09-25T16:48:33,140 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:21897:53, 2023-09-25T16:48:33,141 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:22117:54: 2023-09-25T16:48:33,141 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,142 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:48:33,142 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,287 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:33,288 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5807:212, 2023-09-25T16:48:33,288 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23353:55, 2023-09-25T16:48:33,289 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23446:51: 2023-09-25T16:48:33,290 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,290 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T16:48:33,291 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,292 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,292 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T16:48:33,293 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,294 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:33,294 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:5808:213, 2023-09-25T16:48:33,295 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23412:46, 2023-09-25T16:48:33,296 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23470:53: 2023-09-25T16:48:33,296 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,297 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T16:48:33,298 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,472 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-25T16:48:33,473 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:23250:21, 2023-09-25T16:48:33,473 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:23299:51: 2023-09-25T16:48:33,474 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,474 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T16:48:33,475 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,602 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, int, std::vector >, unsigned int)’, 2023-09-25T16:48:33,602 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:79792:62: 2023-09-25T16:48:33,603 interfaces/Python/RNA_wrap.cpp:13626:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,603 13626 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:48:33,604 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:48:33,787 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2023-09-25T16:48:33,787 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:79575:62: 2023-09-25T16:48:33,788 interfaces/Python/RNA_wrap.cpp:13594:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:48:33,789 13594 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2023-09-25T16:48:33,789 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:03,947 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2023-09-25T16:49:03,948 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-09-25T16:49:03,962 439 | vector<_Tp, _Alloc>:: 2023-09-25T16:49:03,963 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,039 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,039 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2023-09-25T16:49:04,040 inlined from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = SwigPySequence_Cont; Seq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5307:18, 2023-09-25T16:49:04,041 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5329:12: 2023-09-25T16:49:04,042 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,043 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2023-09-25T16:49:04,043 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,044 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,045 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2023-09-25T16:49:04,045 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,219 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,220 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6913:237, 2023-09-25T16:49:04,221 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42502:60, 2023-09-25T16:49:04,221 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42594:49: 2023-09-25T16:49:04,222 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,223 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2023-09-25T16:49:04,224 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,226 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,227 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2023-09-25T16:49:04,228 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,228 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,229 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6914:238, 2023-09-25T16:49:04,230 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42562:51, 2023-09-25T16:49:04,231 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42616:51: 2023-09-25T16:49:04,232 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,233 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2023-09-25T16:49:04,234 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,416 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,417 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42400:21, 2023-09-25T16:49:04,417 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42447:49: 2023-09-25T16:49:04,418 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,418 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2023-09-25T16:49:04,419 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,542 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,543 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6911:187, 2023-09-25T16:49:04,543 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42003:59, 2023-09-25T16:49:04,544 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42089:46: 2023-09-25T16:49:04,545 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,546 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:49:04,546 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,547 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,548 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6912:231, 2023-09-25T16:49:04,549 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:42059:59, 2023-09-25T16:49:04,549 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:42106:48: 2023-09-25T16:49:04,550 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,550 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2023-09-25T16:49:04,551 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:04,832 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2023-09-25T16:49:04,842 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:4626:15, 2023-09-25T16:49:04,854 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6849:18, 2023-09-25T16:49:04,855 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:41045:58, 2023-09-25T16:49:04,861 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:41265:52: 2023-09-25T16:49:04,918 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-09-25T16:49:04,919 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2023-09-25T16:49:04,919 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:49:30,630 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2023-09-25T16:49:30,909 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2023-09-25T16:49:30,910 src/ViennaRNA/2Dfold.c:325:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,910 325 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2023-09-25T16:49:30,911 | ^~ 2023-09-25T16:49:30,912 src/ViennaRNA/2Dfold.c:326:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,913 326 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2023-09-25T16:49:30,913 | ^~ 2023-09-25T16:49:30,914 src/ViennaRNA/2Dfold.c:328:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,915 328 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2023-09-25T16:49:30,916 | ^~ 2023-09-25T16:49:30,916 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2023-09-25T16:49:30,917 src/ViennaRNA/2Dfold.c:400:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,917 400 | if (j < vc->params->model_details.min_loop_size + 2) 2023-09-25T16:49:30,918 | ^ 2023-09-25T16:49:30,919 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2023-09-25T16:49:30,919 src/ViennaRNA/2Dfold.c:596:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,920 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T16:49:30,920 | ^~ 2023-09-25T16:49:30,921 src/ViennaRNA/2Dfold.c:596:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,922 596 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2023-09-25T16:49:30,922 | ^~ 2023-09-25T16:49:30,923 src/ViennaRNA/2Dfold.c:712:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,924 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T16:49:30,924 | ^~ 2023-09-25T16:49:30,925 src/ViennaRNA/2Dfold.c:712:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,925 712 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2023-09-25T16:49:30,926 | ^~ 2023-09-25T16:49:30,933 src/ViennaRNA/2Dfold.c:1032:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,934 1032 | if (j > turn + 2) { 2023-09-25T16:49:30,934 | ^ 2023-09-25T16:49:30,949 src/ViennaRNA/2Dfold.c:1402:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,949 1402 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2023-09-25T16:49:30,950 | ^~ 2023-09-25T16:49:30,956 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2023-09-25T16:49:30,958 src/ViennaRNA/2Dfold.c:1622:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,958 1622 | if (j < turn + 2) 2023-09-25T16:49:30,959 | ^ 2023-09-25T16:49:30,961 src/ViennaRNA/2Dfold.c:1648:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,961 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T16:49:30,962 | ^~ 2023-09-25T16:49:30,963 src/ViennaRNA/2Dfold.c:1648:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,963 1648 | } else if ((k >= da) && (l >= db)) { 2023-09-25T16:49:30,964 | ^~ 2023-09-25T16:49:30,965 src/ViennaRNA/2Dfold.c:1650:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,965 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T16:49:30,966 | ^~ 2023-09-25T16:49:30,967 src/ViennaRNA/2Dfold.c:1650:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,967 1650 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2023-09-25T16:49:30,968 | ^~ 2023-09-25T16:49:30,968 src/ViennaRNA/2Dfold.c:1651:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,969 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T16:49:30,969 | ^~ 2023-09-25T16:49:30,970 src/ViennaRNA/2Dfold.c:1651:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,971 1651 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2023-09-25T16:49:30,972 | ^~ 2023-09-25T16:49:30,976 src/ViennaRNA/2Dfold.c:1756:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,977 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T16:49:30,978 | ^~ 2023-09-25T16:49:30,979 src/ViennaRNA/2Dfold.c:1756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,979 1756 | } else if ((k >= d1a) && (l >= d1b)) { 2023-09-25T16:49:30,980 | ^~ 2023-09-25T16:49:30,980 In file included from src/ViennaRNA/2Dfold.c:17: 2023-09-25T16:49:30,981 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,981 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:30,982 | ^ 2023-09-25T16:49:30,982 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:30,983 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T16:49:30,983 | ^~~~ 2023-09-25T16:49:30,984 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:30,984 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:30,984 | ^~~ 2023-09-25T16:49:30,985 src/ViennaRNA/2Dfold.c:1757:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:30,985 1757 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2023-09-25T16:49:30,986 | ^~~~ 2023-09-25T16:49:30,986 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,987 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:30,988 | ^ 2023-09-25T16:49:30,989 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:30,989 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T16:49:30,990 | ^~~~ 2023-09-25T16:49:30,991 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:30,991 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:30,992 | ^~~ 2023-09-25T16:49:30,992 src/ViennaRNA/2Dfold.c:1760:25: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:30,993 1760 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2023-09-25T16:49:30,994 | ^~~~ 2023-09-25T16:49:30,995 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2023-09-25T16:49:30,995 src/ViennaRNA/2Dfold.c:1864:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,996 1864 | if ((unsigned int)base_d1 == k) 2023-09-25T16:49:30,996 | ^~ 2023-09-25T16:49:30,997 src/ViennaRNA/2Dfold.c:1865:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:30,997 1865 | if ((unsigned int)base_d2 == l) 2023-09-25T16:49:30,998 | ^~ 2023-09-25T16:49:30,998 src/ViennaRNA/2Dfold.c:1910:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:30,999 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T16:49:31,000 | ^ 2023-09-25T16:49:31,000 src/ViennaRNA/2Dfold.c:1910:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,001 1910 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2023-09-25T16:49:31,002 | ^ 2023-09-25T16:49:31,004 src/ViennaRNA/2Dfold.c:2018:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,005 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T16:49:31,005 | ^ 2023-09-25T16:49:31,006 src/ViennaRNA/2Dfold.c:2018:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,007 2018 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2023-09-25T16:49:31,007 | ^ 2023-09-25T16:49:31,017 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2023-09-25T16:49:31,019 src/ViennaRNA/2Dfold.c:2293:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,019 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,019 | ^~ 2023-09-25T16:49:31,021 src/ViennaRNA/2Dfold.c:2293:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,021 2293 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,022 | ^~ 2023-09-25T16:49:31,023 src/ViennaRNA/2Dfold.c:2294:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,024 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T16:49:31,025 | ^~ 2023-09-25T16:49:31,026 src/ViennaRNA/2Dfold.c:2294:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,027 2294 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2023-09-25T16:49:31,027 | ^~ 2023-09-25T16:49:31,028 src/ViennaRNA/2Dfold.c:2295:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,029 2295 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2023-09-25T16:49:31,030 | ^~ 2023-09-25T16:49:31,031 src/ViennaRNA/2Dfold.c:2296:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,031 2296 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2023-09-25T16:49:31,032 | ^~ 2023-09-25T16:49:31,033 src/ViennaRNA/2Dfold.c:2310:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,034 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,035 | ^~ 2023-09-25T16:49:31,036 src/ViennaRNA/2Dfold.c:2310:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,037 2310 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,037 | ^~ 2023-09-25T16:49:31,038 src/ViennaRNA/2Dfold.c:2311:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,039 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T16:49:31,040 | ^~ 2023-09-25T16:49:31,041 src/ViennaRNA/2Dfold.c:2311:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,042 2311 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2023-09-25T16:49:31,042 | ^~ 2023-09-25T16:49:31,043 src/ViennaRNA/2Dfold.c:2312:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,044 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T16:49:31,044 | ^~ 2023-09-25T16:49:31,045 src/ViennaRNA/2Dfold.c:2312:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,046 2312 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2023-09-25T16:49:31,046 | ^~ 2023-09-25T16:49:31,051 src/ViennaRNA/2Dfold.c:2364:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,051 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,052 | ^~ 2023-09-25T16:49:31,053 src/ViennaRNA/2Dfold.c:2364:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,053 2364 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,054 | ^~ 2023-09-25T16:49:31,055 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,056 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,056 | ^ 2023-09-25T16:49:31,057 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,057 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:49:31,058 | ^~~~ 2023-09-25T16:49:31,059 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,059 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,060 | ^~~ 2023-09-25T16:49:31,060 src/ViennaRNA/2Dfold.c:2365:55: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,061 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:49:31,061 | ^~~~ 2023-09-25T16:49:31,062 src/ViennaRNA/2Dfold.c:2365:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,063 2365 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2023-09-25T16:49:31,063 | ^~ 2023-09-25T16:49:31,064 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,064 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,065 | ^ 2023-09-25T16:49:31,065 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,066 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:49:31,066 | ^~~~ 2023-09-25T16:49:31,067 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,068 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,068 | ^~~ 2023-09-25T16:49:31,069 src/ViennaRNA/2Dfold.c:2368:24: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,069 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:49:31,070 | ^~~~ 2023-09-25T16:49:31,070 src/ViennaRNA/2Dfold.c:2368:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,070 2368 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2023-09-25T16:49:31,071 | ^~ 2023-09-25T16:49:31,071 src/ViennaRNA/2Dfold.c:2369:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,072 2369 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2023-09-25T16:49:31,072 | ^~ 2023-09-25T16:49:31,073 src/ViennaRNA/2Dfold.c:2370:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,073 2370 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2023-09-25T16:49:31,073 | ^~ 2023-09-25T16:49:31,074 src/ViennaRNA/2Dfold.c:2371:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,074 2371 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2023-09-25T16:49:31,075 | ^~ 2023-09-25T16:49:31,075 src/ViennaRNA/2Dfold.c:2372:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,076 2372 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2023-09-25T16:49:31,077 | ^~ 2023-09-25T16:49:31,079 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2023-09-25T16:49:31,081 src/ViennaRNA/2Dfold.c:2492:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,082 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,082 | ^~ 2023-09-25T16:49:31,083 src/ViennaRNA/2Dfold.c:2492:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,084 2492 | if (d1 <= k && d2 <= l) { 2023-09-25T16:49:31,085 | ^~ 2023-09-25T16:49:31,086 src/ViennaRNA/2Dfold.c:2493:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,086 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T16:49:31,087 | ^~ 2023-09-25T16:49:31,088 src/ViennaRNA/2Dfold.c:2493:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,089 2493 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2023-09-25T16:49:31,089 | ^~ 2023-09-25T16:49:31,090 src/ViennaRNA/2Dfold.c:2494:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,091 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T16:49:31,091 | ^~ 2023-09-25T16:49:31,093 src/ViennaRNA/2Dfold.c:2494:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,094 2494 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2023-09-25T16:49:31,094 | ^~ 2023-09-25T16:49:31,096 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2023-09-25T16:49:31,098 src/ViennaRNA/2Dfold.c:2614:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,099 2614 | if (u < turn) 2023-09-25T16:49:31,099 | ^ 2023-09-25T16:49:31,104 src/ViennaRNA/2Dfold.c:2668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,104 2668 | if (u < turn) 2023-09-25T16:49:31,105 | ^ 2023-09-25T16:49:31,113 src/ViennaRNA/2Dfold.c:2778:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,113 2778 | if (seq_length > 2 * turn) { 2023-09-25T16:49:31,114 | ^ 2023-09-25T16:49:31,119 src/ViennaRNA/2Dfold.c:2863:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,119 2863 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2023-09-25T16:49:31,120 | ^~ 2023-09-25T16:49:31,121 src/ViennaRNA/2Dfold.c:2864:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,122 2864 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2023-09-25T16:49:31,122 | ^~ 2023-09-25T16:49:31,126 src/ViennaRNA/2Dfold.c:2881:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,126 2881 | if (u < turn) 2023-09-25T16:49:31,127 | ^ 2023-09-25T16:49:31,130 src/ViennaRNA/2Dfold.c:2904:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,131 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,132 | ^~ 2023-09-25T16:49:31,133 src/ViennaRNA/2Dfold.c:2904:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,134 2904 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,134 | ^~ 2023-09-25T16:49:31,136 src/ViennaRNA/2Dfold.c:2905:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,136 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T16:49:31,137 | ^~ 2023-09-25T16:49:31,138 src/ViennaRNA/2Dfold.c:2905:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,139 2905 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2023-09-25T16:49:31,140 | ^~ 2023-09-25T16:49:31,141 src/ViennaRNA/2Dfold.c:2906:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,142 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T16:49:31,142 | ^~ 2023-09-25T16:49:31,144 src/ViennaRNA/2Dfold.c:2906:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,145 2906 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2023-09-25T16:49:31,146 | ^~ 2023-09-25T16:49:31,148 src/ViennaRNA/2Dfold.c:2932:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,148 2932 | if (u < turn) 2023-09-25T16:49:31,149 | ^ 2023-09-25T16:49:31,155 src/ViennaRNA/2Dfold.c:2975:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,156 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,156 | ^~ 2023-09-25T16:49:31,158 src/ViennaRNA/2Dfold.c:2975:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,159 2975 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,159 | ^~ 2023-09-25T16:49:31,161 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,162 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,162 | ^ 2023-09-25T16:49:31,163 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,163 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:49:31,163 | ^~~~ 2023-09-25T16:49:31,165 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,166 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,166 | ^~~ 2023-09-25T16:49:31,167 src/ViennaRNA/2Dfold.c:2976:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,167 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:49:31,168 | ^~~~ 2023-09-25T16:49:31,169 src/ViennaRNA/2Dfold.c:2976:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,169 2976 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2023-09-25T16:49:31,170 | ^~ 2023-09-25T16:49:31,171 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,172 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,172 | ^ 2023-09-25T16:49:31,173 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,173 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:49:31,174 | ^~~~ 2023-09-25T16:49:31,175 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,175 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,176 | ^~~ 2023-09-25T16:49:31,177 src/ViennaRNA/2Dfold.c:2977:62: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,177 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:49:31,178 | ^~~~ 2023-09-25T16:49:31,179 src/ViennaRNA/2Dfold.c:2977:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,179 2977 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2023-09-25T16:49:31,179 | ^~ 2023-09-25T16:49:31,181 src/ViennaRNA/2Dfold.c:2979:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,181 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T16:49:31,182 | ^~ 2023-09-25T16:49:31,184 src/ViennaRNA/2Dfold.c:2979:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,184 2979 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2023-09-25T16:49:31,185 | ^~ 2023-09-25T16:49:31,186 src/ViennaRNA/2Dfold.c:2980:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,187 2980 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2023-09-25T16:49:31,187 | ^~ 2023-09-25T16:49:31,189 src/ViennaRNA/2Dfold.c:2981:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,190 2981 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2023-09-25T16:49:31,190 | ^~ 2023-09-25T16:49:31,192 src/ViennaRNA/2Dfold.c:3002:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,193 3002 | if (seq_length > 2 * turn) { 2023-09-25T16:49:31,194 | ^ 2023-09-25T16:49:31,196 src/ViennaRNA/2Dfold.c:3018:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,197 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,197 | ^~ 2023-09-25T16:49:31,199 src/ViennaRNA/2Dfold.c:3018:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,200 3018 | if ((k >= d1) && (l >= d2)) { 2023-09-25T16:49:31,200 | ^~ 2023-09-25T16:49:31,202 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,203 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,203 | ^ 2023-09-25T16:49:31,204 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,204 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:49:31,205 | ^~~~ 2023-09-25T16:49:31,205 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,206 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,206 | ^~~ 2023-09-25T16:49:31,207 src/ViennaRNA/2Dfold.c:3020:58: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,208 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:49:31,208 | ^~~~ 2023-09-25T16:49:31,209 src/ViennaRNA/2Dfold.c:3020:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,209 3020 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2023-09-25T16:49:31,210 | ^~ 2023-09-25T16:49:31,211 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,212 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,212 | ^ 2023-09-25T16:49:31,213 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,213 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,213 | ^~~~ 2023-09-25T16:49:31,215 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,215 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,216 | ^~~ 2023-09-25T16:49:31,216 src/ViennaRNA/2Dfold.c:3023:32: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,217 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,217 | ^~~~ 2023-09-25T16:49:31,218 src/ViennaRNA/2Dfold.c:3023:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,219 3023 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,219 | ^~ 2023-09-25T16:49:31,221 src/ViennaRNA/2Dfold.c:3024:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,222 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T16:49:31,222 | ^~ 2023-09-25T16:49:31,224 src/ViennaRNA/2Dfold.c:3024:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,225 3024 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2023-09-25T16:49:31,226 | ^~ 2023-09-25T16:49:31,227 src/ViennaRNA/2Dfold.c:3025:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,228 3025 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2023-09-25T16:49:31,229 | ^~ 2023-09-25T16:49:31,230 src/ViennaRNA/2Dfold.c:3026:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,231 3026 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2023-09-25T16:49:31,232 | ^~ 2023-09-25T16:49:31,238 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2023-09-25T16:49:31,241 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,242 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,243 | ^ 2023-09-25T16:49:31,243 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,243 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:49:31,244 | ^~~~ 2023-09-25T16:49:31,244 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,245 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,245 | ^~~ 2023-09-25T16:49:31,246 src/ViennaRNA/2Dfold.c:3173:41: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,246 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:49:31,246 | ^~~~ 2023-09-25T16:49:31,247 src/ViennaRNA/2Dfold.c:3173:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,248 3173 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2023-09-25T16:49:31,248 | ^~ 2023-09-25T16:49:31,250 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,251 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,251 | ^ 2023-09-25T16:49:31,252 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,252 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,253 | ^~~~ 2023-09-25T16:49:31,254 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:31,254 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:31,255 | ^~~ 2023-09-25T16:49:31,256 src/ViennaRNA/2Dfold.c:3174:49: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:31,256 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,257 | ^~~~ 2023-09-25T16:49:31,257 src/ViennaRNA/2Dfold.c:3174:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:31,258 3174 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2023-09-25T16:49:31,258 | ^~ 2023-09-25T16:49:31,259 src/ViennaRNA/2Dfold.c:3175:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,260 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T16:49:31,261 | ^~ 2023-09-25T16:49:31,263 src/ViennaRNA/2Dfold.c:3175:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,263 3175 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2023-09-25T16:49:31,264 | ^~ 2023-09-25T16:49:31,265 src/ViennaRNA/2Dfold.c:3176:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,266 3176 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2023-09-25T16:49:31,267 | ^~ 2023-09-25T16:49:31,268 src/ViennaRNA/2Dfold.c:3177:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,269 3177 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2023-09-25T16:49:31,270 | ^~ 2023-09-25T16:49:31,279 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2023-09-25T16:49:31,282 src/ViennaRNA/2Dfold.c:3557:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,282 3557 | if (u < turn) 2023-09-25T16:49:31,283 | ^ 2023-09-25T16:49:31,291 src/ViennaRNA/2Dfold.c:3631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,292 3631 | if (u < turn) 2023-09-25T16:49:31,292 | ^ 2023-09-25T16:49:31,307 src/ViennaRNA/2Dfold.c:3796:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:31,308 3796 | if (seq_length > 2 * turn) { 2023-09-25T16:49:31,308 | ^ 2023-09-25T16:49:41,778 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2023-09-25T16:49:42,019 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2023-09-25T16:49:42,020 src/ViennaRNA/2Dpfold.c:431:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,021 431 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2023-09-25T16:49:42,021 | ^ 2023-09-25T16:49:42,025 src/ViennaRNA/2Dpfold.c:583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,026 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,026 | ^~ 2023-09-25T16:49:42,027 src/ViennaRNA/2Dpfold.c:583:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,028 583 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,028 | ^~ 2023-09-25T16:49:42,031 src/ViennaRNA/2Dpfold.c:666:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,032 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,032 | ^~ 2023-09-25T16:49:42,033 src/ViennaRNA/2Dpfold.c:666:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,034 666 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,034 | ^~ 2023-09-25T16:49:42,037 src/ViennaRNA/2Dpfold.c:796:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,038 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,038 | ^~ 2023-09-25T16:49:42,039 src/ViennaRNA/2Dpfold.c:796:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,040 796 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,040 | ^~ 2023-09-25T16:49:42,041 src/ViennaRNA/2Dpfold.c:828:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,042 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,042 | ^~ 2023-09-25T16:49:42,043 src/ViennaRNA/2Dpfold.c:828:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,043 828 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,044 | ^~ 2023-09-25T16:49:42,048 src/ViennaRNA/2Dpfold.c:952:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,049 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,049 | ^~ 2023-09-25T16:49:42,050 src/ViennaRNA/2Dpfold.c:952:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,050 952 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,051 | ^~ 2023-09-25T16:49:42,053 src/ViennaRNA/2Dpfold.c:991:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,054 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,054 | ^~ 2023-09-25T16:49:42,055 src/ViennaRNA/2Dpfold.c:991:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,056 991 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,057 | ^~ 2023-09-25T16:49:42,060 src/ViennaRNA/2Dpfold.c:1121:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,060 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,061 | ^~ 2023-09-25T16:49:42,061 src/ViennaRNA/2Dpfold.c:1121:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,062 1121 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2023-09-25T16:49:42,063 | ^~ 2023-09-25T16:49:42,067 src/ViennaRNA/2Dpfold.c:1203:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,067 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,068 | ^~ 2023-09-25T16:49:42,068 src/ViennaRNA/2Dpfold.c:1203:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,069 1203 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2023-09-25T16:49:42,070 | ^~ 2023-09-25T16:49:42,078 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2023-09-25T16:49:42,079 src/ViennaRNA/2Dpfold.c:1631:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,080 1631 | if (u < turn) 2023-09-25T16:49:42,080 | ^ 2023-09-25T16:49:42,090 src/ViennaRNA/2Dpfold.c:1849:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,091 1849 | if (seq_length > 2 * turn - 3) { 2023-09-25T16:49:42,091 | ^ 2023-09-25T16:49:42,108 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2023-09-25T16:49:42,110 src/ViennaRNA/2Dpfold.c:2300:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,110 2300 | if ((d1 == referenceBPs1[sn]) 2023-09-25T16:49:42,110 | ^~ 2023-09-25T16:49:42,112 src/ViennaRNA/2Dpfold.c:2301:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,113 2301 | && (d2 == referenceBPs2[sn])) { 2023-09-25T16:49:42,113 | ^~ 2023-09-25T16:49:42,115 src/ViennaRNA/2Dpfold.c:2312:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,116 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,116 | ^~ 2023-09-25T16:49:42,118 src/ViennaRNA/2Dpfold.c:2312:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,119 2312 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,119 | ^~ 2023-09-25T16:49:42,121 src/ViennaRNA/2Dpfold.c:2314:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,121 2314 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2023-09-25T16:49:42,122 | ^~ 2023-09-25T16:49:42,123 src/ViennaRNA/2Dpfold.c:2315:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,124 2315 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2023-09-25T16:49:42,125 | ^~ 2023-09-25T16:49:42,126 src/ViennaRNA/2Dpfold.c:2317:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,127 2317 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2023-09-25T16:49:42,127 | ^~ 2023-09-25T16:49:42,129 src/ViennaRNA/2Dpfold.c:2318:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,129 2318 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2023-09-25T16:49:42,130 | ^~ 2023-09-25T16:49:42,133 src/ViennaRNA/2Dpfold.c:2346:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,134 2346 | if ((d1 >= da) 2023-09-25T16:49:42,134 | ^~ 2023-09-25T16:49:42,136 src/ViennaRNA/2Dpfold.c:2347:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,137 2347 | && (d2 >= db) 2023-09-25T16:49:42,137 | ^~ 2023-09-25T16:49:42,139 In file included from src/ViennaRNA/2Dpfold.c:18: 2023-09-25T16:49:42,140 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,141 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,141 | ^ 2023-09-25T16:49:42,142 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,142 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:49:42,143 | ^~~~ 2023-09-25T16:49:42,143 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,143 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,144 | ^~~ 2023-09-25T16:49:42,144 src/ViennaRNA/2Dpfold.c:2351:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,145 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:49:42,145 | ^~~~ 2023-09-25T16:49:42,146 src/ViennaRNA/2Dpfold.c:2351:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,147 2351 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2023-09-25T16:49:42,147 | ^~ 2023-09-25T16:49:42,149 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,149 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,150 | ^ 2023-09-25T16:49:42,150 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,151 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:49:42,151 | ^~~~ 2023-09-25T16:49:42,152 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,153 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,153 | ^~~ 2023-09-25T16:49:42,154 src/ViennaRNA/2Dpfold.c:2354:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,154 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:49:42,155 | ^~~~ 2023-09-25T16:49:42,155 src/ViennaRNA/2Dpfold.c:2354:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,156 2354 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2023-09-25T16:49:42,157 | ^~ 2023-09-25T16:49:42,158 src/ViennaRNA/2Dpfold.c:2356:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,159 2356 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2023-09-25T16:49:42,159 | ^~ 2023-09-25T16:49:42,161 src/ViennaRNA/2Dpfold.c:2357:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,162 2357 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2023-09-25T16:49:42,162 | ^~ 2023-09-25T16:49:42,164 src/ViennaRNA/2Dpfold.c:2358:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,164 2358 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2023-09-25T16:49:42,165 | ^~ 2023-09-25T16:49:42,167 src/ViennaRNA/2Dpfold.c:2359:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,168 2359 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2023-09-25T16:49:42,168 | ^~ 2023-09-25T16:49:42,170 src/ViennaRNA/2Dpfold.c:2383:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,171 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,171 | ^~ 2023-09-25T16:49:42,173 src/ViennaRNA/2Dpfold.c:2383:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,174 2383 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,174 | ^~ 2023-09-25T16:49:42,178 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2023-09-25T16:49:42,180 src/ViennaRNA/2Dpfold.c:2542:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,181 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T16:49:42,181 | ^~ 2023-09-25T16:49:42,183 src/ViennaRNA/2Dpfold.c:2542:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,184 2542 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2023-09-25T16:49:42,184 | ^~ 2023-09-25T16:49:42,191 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2023-09-25T16:49:42,194 src/ViennaRNA/2Dpfold.c:2746:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,194 2746 | if (((cnt1 + da) == d1) 2023-09-25T16:49:42,195 | ^~ 2023-09-25T16:49:42,197 src/ViennaRNA/2Dpfold.c:2747:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,198 2747 | && ((cnt2 + db) == d2)) { 2023-09-25T16:49:42,198 | ^~ 2023-09-25T16:49:42,212 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2023-09-25T16:49:42,215 src/ViennaRNA/2Dpfold.c:3025:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,215 3025 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:49:42,216 | ^~ 2023-09-25T16:49:42,218 src/ViennaRNA/2Dpfold.c:3026:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,218 3026 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:49:42,219 | ^~ 2023-09-25T16:49:42,223 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2023-09-25T16:49:42,226 src/ViennaRNA/2Dpfold.c:3211:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,227 3211 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:49:42,227 | ^~ 2023-09-25T16:49:42,230 src/ViennaRNA/2Dpfold.c:3212:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,230 3212 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:49:42,231 | ^~ 2023-09-25T16:49:42,238 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2023-09-25T16:49:42,241 src/ViennaRNA/2Dpfold.c:3383:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,242 3383 | if (((cnt1 + cnt3 + da) == d1) 2023-09-25T16:49:42,242 | ^~ 2023-09-25T16:49:42,245 src/ViennaRNA/2Dpfold.c:3384:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,245 3384 | && ((cnt2 + cnt4 + db) == d2)) { 2023-09-25T16:49:42,246 | ^~ 2023-09-25T16:49:42,255 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2023-09-25T16:49:42,258 src/ViennaRNA/2Dpfold.c:3578:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,259 3578 | if ((da == d1) && (db == d2)) 2023-09-25T16:49:42,259 | ^~ 2023-09-25T16:49:42,262 src/ViennaRNA/2Dpfold.c:3578:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,263 3578 | if ((da == d1) && (db == d2)) 2023-09-25T16:49:42,263 | ^~ 2023-09-25T16:49:42,270 src/ViennaRNA/2Dpfold.c:3613:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,270 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,271 | ^~ 2023-09-25T16:49:42,274 src/ViennaRNA/2Dpfold.c:3613:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,275 3613 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,275 | ^~ 2023-09-25T16:49:42,278 src/ViennaRNA/2Dpfold.c:3614:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,278 3614 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2023-09-25T16:49:42,279 | ^~ 2023-09-25T16:49:42,282 src/ViennaRNA/2Dpfold.c:3615:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,282 3615 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2023-09-25T16:49:42,283 | ^~ 2023-09-25T16:49:42,285 src/ViennaRNA/2Dpfold.c:3616:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,286 3616 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2023-09-25T16:49:42,287 | ^~ 2023-09-25T16:49:42,289 src/ViennaRNA/2Dpfold.c:3617:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,290 3617 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2023-09-25T16:49:42,291 | ^~ 2023-09-25T16:49:42,301 src/ViennaRNA/2Dpfold.c:3789:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,302 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:49:42,302 | ^~ 2023-09-25T16:49:42,305 src/ViennaRNA/2Dpfold.c:3789:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,306 3789 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:49:42,307 | ^~ 2023-09-25T16:49:42,310 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,310 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,311 | ^ 2023-09-25T16:49:42,311 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,311 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,312 | ^~~~ 2023-09-25T16:49:42,314 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,315 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,315 | ^~~ 2023-09-25T16:49:42,316 src/ViennaRNA/2Dpfold.c:3790:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,316 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,317 | ^~~~ 2023-09-25T16:49:42,319 src/ViennaRNA/2Dpfold.c:3790:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,320 3790 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,320 | ^~ 2023-09-25T16:49:42,323 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,324 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,324 | ^ 2023-09-25T16:49:42,325 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,326 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,326 | ^~~~ 2023-09-25T16:49:42,328 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,329 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,329 | ^~~ 2023-09-25T16:49:42,330 src/ViennaRNA/2Dpfold.c:3792:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,331 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,331 | ^~~~ 2023-09-25T16:49:42,333 src/ViennaRNA/2Dpfold.c:3792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,333 3792 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,334 | ^~ 2023-09-25T16:49:42,337 src/ViennaRNA/2Dpfold.c:3793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,337 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T16:49:42,338 | ^~ 2023-09-25T16:49:42,341 src/ViennaRNA/2Dpfold.c:3793:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,342 3793 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2023-09-25T16:49:42,342 | ^~ 2023-09-25T16:49:42,345 src/ViennaRNA/2Dpfold.c:3794:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,346 3794 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T16:49:42,346 | ^~ 2023-09-25T16:49:42,349 src/ViennaRNA/2Dpfold.c:3795:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,350 3795 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2023-09-25T16:49:42,350 | ^~ 2023-09-25T16:49:42,354 src/ViennaRNA/2Dpfold.c:3806:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,354 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:49:42,355 | ^~ 2023-09-25T16:49:42,358 src/ViennaRNA/2Dpfold.c:3806:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,359 3806 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2023-09-25T16:49:42,359 | ^~ 2023-09-25T16:49:42,362 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,363 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,363 | ^ 2023-09-25T16:49:42,364 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,364 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,365 | ^~~~ 2023-09-25T16:49:42,367 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,368 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,368 | ^~~ 2023-09-25T16:49:42,369 src/ViennaRNA/2Dpfold.c:3807:54: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,369 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,370 | ^~~~ 2023-09-25T16:49:42,372 src/ViennaRNA/2Dpfold.c:3807:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,372 3807 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,373 | ^~ 2023-09-25T16:49:42,376 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,377 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,377 | ^ 2023-09-25T16:49:42,378 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,378 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,379 | ^~~~ 2023-09-25T16:49:42,381 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,382 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,383 | ^~~ 2023-09-25T16:49:42,383 src/ViennaRNA/2Dpfold.c:3809:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,383 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,384 | ^~~~ 2023-09-25T16:49:42,386 src/ViennaRNA/2Dpfold.c:3809:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,386 3809 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,387 | ^~ 2023-09-25T16:49:42,390 src/ViennaRNA/2Dpfold.c:3810:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,390 3810 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2023-09-25T16:49:42,391 | ^~ 2023-09-25T16:49:42,394 src/ViennaRNA/2Dpfold.c:3811:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,394 3811 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2023-09-25T16:49:42,395 | ^~ 2023-09-25T16:49:42,398 src/ViennaRNA/2Dpfold.c:3812:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,398 3812 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2023-09-25T16:49:42,399 | ^~ 2023-09-25T16:49:42,402 src/ViennaRNA/2Dpfold.c:3813:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,402 3813 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2023-09-25T16:49:42,403 | ^~ 2023-09-25T16:49:42,407 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2023-09-25T16:49:42,411 src/ViennaRNA/2Dpfold.c:3940:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,411 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,412 | ^~ 2023-09-25T16:49:42,415 src/ViennaRNA/2Dpfold.c:3940:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,416 3940 | if (d1 >= da && d2 >= db) { 2023-09-25T16:49:42,416 | ^~ 2023-09-25T16:49:42,419 src/ViennaRNA/2Dpfold.c:3941:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,420 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T16:49:42,420 | ^~ 2023-09-25T16:49:42,424 src/ViennaRNA/2Dpfold.c:3941:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,424 3941 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2023-09-25T16:49:42,425 | ^~ 2023-09-25T16:49:42,428 src/ViennaRNA/2Dpfold.c:3942:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,428 3942 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2023-09-25T16:49:42,429 | ^~ 2023-09-25T16:49:42,432 src/ViennaRNA/2Dpfold.c:3943:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,433 3943 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2023-09-25T16:49:42,434 | ^~ 2023-09-25T16:49:42,443 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2023-09-25T16:49:42,446 src/ViennaRNA/2Dpfold.c:4157:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,447 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T16:49:42,447 | ^~ 2023-09-25T16:49:42,451 src/ViennaRNA/2Dpfold.c:4157:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,451 4157 | if (d1 >= da2 && d2 >= db2) { 2023-09-25T16:49:42,452 | ^~ 2023-09-25T16:49:42,455 src/ViennaRNA/2Dpfold.c:4158:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,456 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:49:42,456 | ^~ 2023-09-25T16:49:42,460 src/ViennaRNA/2Dpfold.c:4158:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,460 4158 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:49:42,461 | ^~ 2023-09-25T16:49:42,464 src/ViennaRNA/2Dpfold.c:4159:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,465 4159 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2023-09-25T16:49:42,465 | ^~ 2023-09-25T16:49:42,468 src/ViennaRNA/2Dpfold.c:4160:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,469 4160 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2023-09-25T16:49:42,469 | ^~ 2023-09-25T16:49:42,473 src/ViennaRNA/2Dpfold.c:4173:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,474 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T16:49:42,474 | ^~ 2023-09-25T16:49:42,477 src/ViennaRNA/2Dpfold.c:4173:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,478 4173 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2023-09-25T16:49:42,479 | ^~ 2023-09-25T16:49:42,482 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,483 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,483 | ^ 2023-09-25T16:49:42,484 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,484 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,485 | ^~~~ 2023-09-25T16:49:42,487 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,488 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,489 | ^~~ 2023-09-25T16:49:42,490 src/ViennaRNA/2Dpfold.c:4175:26: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,490 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,491 | ^~~~ 2023-09-25T16:49:42,493 src/ViennaRNA/2Dpfold.c:4175:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,493 4175 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2023-09-25T16:49:42,494 | ^~ 2023-09-25T16:49:42,497 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,498 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,498 | ^ 2023-09-25T16:49:42,499 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,499 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,499 | ^~~~ 2023-09-25T16:49:42,502 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:49:42,503 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:49:42,503 | ^~~ 2023-09-25T16:49:42,504 src/ViennaRNA/2Dpfold.c:4177:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:49:42,504 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,505 | ^~~~ 2023-09-25T16:49:42,507 src/ViennaRNA/2Dpfold.c:4177:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,508 4177 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2023-09-25T16:49:42,509 | ^~ 2023-09-25T16:49:42,512 src/ViennaRNA/2Dpfold.c:4178:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,513 4178 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2023-09-25T16:49:42,513 | ^~ 2023-09-25T16:49:42,516 src/ViennaRNA/2Dpfold.c:4179:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,517 4179 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2023-09-25T16:49:42,518 | ^~ 2023-09-25T16:49:42,521 src/ViennaRNA/2Dpfold.c:4180:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,521 4180 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2023-09-25T16:49:42,522 | ^~ 2023-09-25T16:49:42,525 src/ViennaRNA/2Dpfold.c:4181:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:42,526 4181 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2023-09-25T16:49:42,526 | ^~ 2023-09-25T16:49:42,531 src/ViennaRNA/2Dpfold.c:4212:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,532 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T16:49:42,533 | ^~ 2023-09-25T16:49:42,536 src/ViennaRNA/2Dpfold.c:4212:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:42,537 4212 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2023-09-25T16:49:42,538 | ^~ 2023-09-25T16:49:49,464 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,465 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T16:49:49,467 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,467 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:49:49,468 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,468 src/ViennaRNA/2Dpfold.c:467:57: note: ‘l_max_post_b’ was declared here 2023-09-25T16:49:49,469 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T16:49:49,469 | ^~~~~~~~~~~~ 2023-09-25T16:49:49,469 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,470 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:587:21: 2023-09-25T16:49:49,471 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,472 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:49:49,472 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,473 src/ViennaRNA/2Dpfold.c:467:42: note: ‘l_min_post_b’ was declared here 2023-09-25T16:49:49,473 467 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2023-09-25T16:49:49,473 | ^~~~~~~~~~~~ 2023-09-25T16:49:49,474 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,475 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T16:49:49,476 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,476 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:49:49,477 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,478 src/ViennaRNA/2Dpfold.c:1041:49: note: ‘l_max_post’ was declared here 2023-09-25T16:49:49,478 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T16:49:49,479 | ^~~~~~~~~~ 2023-09-25T16:49:49,479 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,480 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1210:21: 2023-09-25T16:49:49,481 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,482 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:49:49,482 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,483 src/ViennaRNA/2Dpfold.c:1041:36: note: ‘l_min_post’ was declared here 2023-09-25T16:49:49,483 1041 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2023-09-25T16:49:49,484 | ^~~~~~~~~~ 2023-09-25T16:49:49,484 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,485 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T16:49:49,486 src/ViennaRNA/2Dpfold.c:4361:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,487 4361 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2023-09-25T16:49:49,487 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,488 src/ViennaRNA/2Dpfold.c:711:55: note: ‘l_max_post_m’ was declared here 2023-09-25T16:49:49,489 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T16:49:49,489 | ^~~~~~~~~~~~ 2023-09-25T16:49:49,490 In function ‘updatePosteriorBoundaries’, 2023-09-25T16:49:49,491 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:958:17: 2023-09-25T16:49:49,491 src/ViennaRNA/2Dpfold.c:4360:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:49,492 4360 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2023-09-25T16:49:49,492 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2023-09-25T16:49:49,492 src/ViennaRNA/2Dpfold.c:711:40: note: ‘l_min_post_m’ was declared here 2023-09-25T16:49:49,493 711 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2023-09-25T16:49:49,493 | ^~~~~~~~~~~~ 2023-09-25T16:49:53,489 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/LPfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/LPfold.o -fopenmp 2023-09-25T16:49:53,731 src/ViennaRNA/LPfold.c: In function ‘free_dp_matrices’: 2023-09-25T16:49:53,731 src/ViennaRNA/LPfold.c:514:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:49:53,732 514 | if (n > winSize + MAXLOOP) 2023-09-25T16:49:53,732 | ^ 2023-09-25T16:49:53,736 src/ViennaRNA/LPfold.c: In function ‘rotate_constraints’: 2023-09-25T16:49:53,737 src/ViennaRNA/LPfold.c:667:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:53,737 667 | if (j + 1 <= fc->length) { 2023-09-25T16:49:53,738 | ^~ 2023-09-25T16:49:57,351 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/Lfold.o -fopenmp 2023-09-25T16:49:57,570 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/MEA.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/MEA.o -fopenmp 2023-09-25T16:49:57,818 src/ViennaRNA/MEA.c: In function ‘prune_sort’: 2023-09-25T16:49:57,819 src/ViennaRNA/MEA.c:321:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:57,820 321 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:49:57,820 | ^~ 2023-09-25T16:49:57,821 src/ViennaRNA/MEA.c:342:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:57,822 342 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:49:57,822 | ^~ 2023-09-25T16:49:57,823 src/ViennaRNA/MEA.c:349:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:49:57,824 349 | if (pc->i > n) 2023-09-25T16:49:57,825 | ^ 2023-09-25T16:49:57,826 src/ViennaRNA/MEA.c:358:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:49:57,827 358 | for (i = pc->i; i <= pc->j; i++) 2023-09-25T16:49:57,828 | ^~ 2023-09-25T16:49:58,403 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2023-09-25T16:49:59,184 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2023-09-25T16:49:59,487 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2023-09-25T16:49:59,487 src/ViennaRNA/ProfileDist.c:199:10: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:49:59,488 199 | return dist; 2023-09-25T16:49:59,489 | ^~~~ 2023-09-25T16:49:59,489 src/ViennaRNA/ProfileDist.c:180:11: note: ‘dist’ was declared here 2023-09-25T16:49:59,490 180 | double dist; 2023-09-25T16:49:59,490 | ^~~~ 2023-09-25T16:49:59,845 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2023-09-25T16:49:59,980 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2023-09-25T16:49:59,981 src/ViennaRNA/RNAstruct.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:49:59,982 302 | for (k = 0; k < strlen(tt); k++) 2023-09-25T16:49:59,983 | ^ 2023-09-25T16:49:59,983 src/ViennaRNA/RNAstruct.c:305:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:49:59,984 305 | for (k = 0; k < strlen(tt); k++) 2023-09-25T16:49:59,985 | ^ 2023-09-25T16:49:59,986 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2023-09-25T16:49:59,986 src/ViennaRNA/RNAstruct.c:445:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:49:59,987 445 | while (i < strlen(structure) - 1) { 2023-09-25T16:49:59,988 | ^ 2023-09-25T16:49:59,989 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2023-09-25T16:49:59,990 src/ViennaRNA/RNAstruct.c:599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:49:59,990 599 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2023-09-25T16:49:59,991 | ^ 2023-09-25T16:50:00,787 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2023-09-25T16:50:01,033 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2023-09-25T16:50:01,034 src/ViennaRNA/ali_plex.c:230:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:01,035 230 | if (strlen(s1[s]) != n3) 2023-09-25T16:50:01,036 | ^~ 2023-09-25T16:50:01,037 src/ViennaRNA/ali_plex.c:233:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:01,038 233 | if (strlen(s2[s]) != n4) 2023-09-25T16:50:01,039 | ^~ 2023-09-25T16:50:01,044 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T16:50:01,045 src/ViennaRNA/ali_plex.c:509:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:01,046 509 | if (strlen(s1[s]) != n1) 2023-09-25T16:50:01,047 | ^~ 2023-09-25T16:50:01,048 src/ViennaRNA/ali_plex.c:512:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:01,049 512 | if (strlen(s2[s]) != n2) 2023-09-25T16:50:01,049 | ^~ 2023-09-25T16:50:02,587 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2023-09-25T16:50:02,588 src/ViennaRNA/ali_plex.c:1032:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:02,588 1032 | if (strlen(s1[s]) != n3) 2023-09-25T16:50:02,589 | ^~ 2023-09-25T16:50:02,589 src/ViennaRNA/ali_plex.c:1035:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:02,590 1035 | if (strlen(s2[s]) != n4) 2023-09-25T16:50:02,590 | ^~ 2023-09-25T16:50:02,604 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:50:02,605 src/ViennaRNA/ali_plex.c:1347:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:02,606 1347 | if (strlen(s1[s]) != n1) 2023-09-25T16:50:02,607 | ^~ 2023-09-25T16:50:02,607 src/ViennaRNA/ali_plex.c:1350:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:02,608 1350 | if (strlen(s2[s]) != n2) 2023-09-25T16:50:02,608 | ^~ 2023-09-25T16:50:06,807 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2023-09-25T16:50:06,808 src/ViennaRNA/ali_plex.c:950:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:06,809 950 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T16:50:06,809 | ^ 2023-09-25T16:50:06,810 src/ViennaRNA/ali_plex.c:466:9: note: ‘max_pos_j’ was declared here 2023-09-25T16:50:06,810 466 | int max_pos_j; 2023-09-25T16:50:06,811 | ^~~~~~~~~ 2023-09-25T16:50:06,811 src/ViennaRNA/ali_plex.c:947:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:06,812 947 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T16:50:06,813 | ^ 2023-09-25T16:50:06,814 src/ViennaRNA/ali_plex.c:465:9: note: ‘max_pos’ was declared here 2023-09-25T16:50:06,814 465 | int max_pos; /* get position of the best hit */ 2023-09-25T16:50:06,815 | ^~~~~~~ 2023-09-25T16:50:06,816 src/ViennaRNA/ali_plex.c:787:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:06,817 787 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:50:06,817 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:50:06,818 src/ViennaRNA/ali_plex.c:468:9: note: ‘min_j_colonne’ was declared here 2023-09-25T16:50:06,818 468 | int min_j_colonne; 2023-09-25T16:50:06,819 | ^~~~~~~~~~~~~ 2023-09-25T16:50:08,059 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:50:08,060 src/ViennaRNA/ali_plex.c:1818:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:08,061 1818 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2023-09-25T16:50:08,061 | ^ 2023-09-25T16:50:08,062 src/ViennaRNA/ali_plex.c:1295:9: note: ‘max_pos_j’ was declared here 2023-09-25T16:50:08,062 1295 | int max_pos_j; 2023-09-25T16:50:08,062 | ^~~~~~~~~ 2023-09-25T16:50:08,063 In function ‘aliplot_max_XS’, 2023-09-25T16:50:08,063 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1659:3: 2023-09-25T16:50:08,064 src/ViennaRNA/ali_plex.c:1812:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:08,064 1812 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2023-09-25T16:50:08,064 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:50:08,065 1813 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2023-09-25T16:50:08,065 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:50:08,066 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2023-09-25T16:50:08,066 src/ViennaRNA/ali_plex.c:1294:9: note: ‘max_pos’ was declared here 2023-09-25T16:50:08,067 1294 | int max_pos; /* get position of the best hit */ 2023-09-25T16:50:08,068 | ^~~~~~~ 2023-09-25T16:50:08,068 src/ViennaRNA/ali_plex.c:1636:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:08,069 1636 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:50:08,070 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:50:08,071 src/ViennaRNA/ali_plex.c:1297:9: note: ‘min_j_colonne’ was declared here 2023-09-25T16:50:08,072 1297 | int min_j_colonne; 2023-09-25T16:50:08,072 | ^~~~~~~~~~~~~ 2023-09-25T16:50:09,182 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alifold.o -fopenmp 2023-09-25T16:50:09,652 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alipfold.o -fopenmp 2023-09-25T16:50:09,899 src/ViennaRNA/alipfold.c: In function ‘wrap_alipf_fold’: 2023-09-25T16:50:09,900 src/ViennaRNA/alipfold.c:155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:09,901 155 | for (n_seq = 0; n_seq < backward_compat_compound->n_seq; n_seq++) 2023-09-25T16:50:09,902 | ^ 2023-09-25T16:50:09,902 src/ViennaRNA/alipfold.c:166:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:09,904 166 | for (n_seq = 0; n_seq < vc->n_seq; n_seq++) { 2023-09-25T16:50:09,906 | ^ 2023-09-25T16:50:09,906 src/ViennaRNA/alipfold.c:169:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:09,907 169 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:50:09,907 | ^~ 2023-09-25T16:50:10,158 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/alphabet.o -fopenmp 2023-09-25T16:50:10,863 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/boltzmann_sampling.o -fopenmp 2023-09-25T16:50:11,134 In file included from src/ViennaRNA/boltzmann_sampling.c:29: 2023-09-25T16:50:11,135 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:50:11,135 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,136 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:50:11,137 | ^ 2023-09-25T16:50:11,137 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:50:11,138 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,138 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,139 | ^ 2023-09-25T16:50:11,140 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:50:11,140 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,141 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,142 | ^ 2023-09-25T16:50:11,142 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:50:11,143 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,144 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:50:11,144 | ^ 2023-09-25T16:50:11,145 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:50:11,146 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,147 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,147 | ^ 2023-09-25T16:50:11,148 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:50:11,149 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,150 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,150 | ^ 2023-09-25T16:50:11,151 In file included from src/ViennaRNA/boltzmann_sampling.c:30: 2023-09-25T16:50:11,152 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:50:11,152 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,153 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,153 | ^ 2023-09-25T16:50:11,154 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:50:11,154 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,155 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,155 | ^ 2023-09-25T16:50:11,156 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:50:11,156 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,157 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,157 | ^ 2023-09-25T16:50:11,158 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:50:11,158 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,159 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,160 | ^ 2023-09-25T16:50:11,160 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:50:11,161 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,161 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,162 | ^ 2023-09-25T16:50:11,163 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:50:11,163 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,164 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,164 | ^ 2023-09-25T16:50:11,165 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:50:11,165 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:11,166 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:50:11,166 | ^~ 2023-09-25T16:50:11,167 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:50:11,168 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,168 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,169 | ^ 2023-09-25T16:50:11,170 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:50:11,171 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:11,171 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:11,172 | ^ 2023-09-25T16:50:11,184 In file included from src/ViennaRNA/boltzmann_sampling.c:33: 2023-09-25T16:50:11,185 src/ViennaRNA/data_structures_nonred.inc: In function ‘free_all_nrll’: 2023-09-25T16:50:11,186 src/ViennaRNA/data_structures_nonred.inc:1153:7: warning: unused variable ‘i’ [-Wunused-variable] 2023-09-25T16:50:11,187 1153 | int i; 2023-09-25T16:50:11,187 | ^ 2023-09-25T16:50:14,973 src/ViennaRNA/boltzmann_sampling.c: In function ‘backtrack’: 2023-09-25T16:50:14,974 src/ViennaRNA/boltzmann_sampling.c:1306:25: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:14,974 1306 | q_temp *= exp_E_IntLoop(u1, 2023-09-25T16:50:14,975 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:50:14,975 1307 | u2, 2023-09-25T16:50:14,976 | ~~~ 2023-09-25T16:50:14,976 1308 | type, 2023-09-25T16:50:14,977 | ~~~~~ 2023-09-25T16:50:14,977 1309 | type_2, 2023-09-25T16:50:14,978 | ~~~~~~~ 2023-09-25T16:50:14,979 1310 | S1[i + 1], 2023-09-25T16:50:14,979 | ~~~~~~~~~~ 2023-09-25T16:50:14,980 1311 | S1[j - 1], 2023-09-25T16:50:14,980 | ~~~~~~~~~~ 2023-09-25T16:50:14,981 1312 | S1[k - 1], 2023-09-25T16:50:14,981 | ~~~~~~~~~~ 2023-09-25T16:50:14,982 1313 | S1[l + 1], 2023-09-25T16:50:14,982 | ~~~~~~~~~~ 2023-09-25T16:50:14,983 1314 | pf_params); 2023-09-25T16:50:14,984 | ~~~~~~~~~~ 2023-09-25T16:50:14,984 src/ViennaRNA/boltzmann_sampling.c:1125:45: note: ‘type’ was declared here 2023-09-25T16:50:14,985 1125 | unsigned int **a2s, s, n_seq, n, type, type_2, *types, u1_local, u2_local; 2023-09-25T16:50:14,986 | ^~~~ 2023-09-25T16:50:16,546 In function ‘pbacktrack_circ’, 2023-09-25T16:50:16,546 inlined from ‘vrna_pbacktrack_sub_resume_cb’ at src/ViennaRNA/boltzmann_sampling.c:258:11: 2023-09-25T16:50:16,547 src/ViennaRNA/boltzmann_sampling.c:1659:32: warning: ‘type’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:16,547 1659 | q_temp *= exp_E_IntLoop(ln2 + ln3, 2023-09-25T16:50:16,548 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:50:16,549 1660 | ln1, 2023-09-25T16:50:16,550 | ~~~~ 2023-09-25T16:50:16,550 1661 | type2, 2023-09-25T16:50:16,551 | ~~~~~~ 2023-09-25T16:50:16,552 1662 | type, 2023-09-25T16:50:16,552 | ~~~~~ 2023-09-25T16:50:16,553 1663 | S1[l + 1], 2023-09-25T16:50:16,554 | ~~~~~~~~~~ 2023-09-25T16:50:16,554 1664 | S1[k - 1], 2023-09-25T16:50:16,555 | ~~~~~~~~~~ 2023-09-25T16:50:16,556 1665 | S1[i - 1], 2023-09-25T16:50:16,557 | ~~~~~~~~~~ 2023-09-25T16:50:16,557 1666 | S1[j + 1], 2023-09-25T16:50:16,558 | ~~~~~~~~~~ 2023-09-25T16:50:16,559 1667 | pf_params); 2023-09-25T16:50:16,560 | ~~~~~~~~~~ 2023-09-25T16:50:16,560 src/ViennaRNA/boltzmann_sampling.c: In function ‘vrna_pbacktrack_sub_resume_cb’: 2023-09-25T16:50:16,561 src/ViennaRNA/boltzmann_sampling.c:1524:25: note: ‘type’ was declared here 2023-09-25T16:50:16,561 1524 | unsigned int type, type2, *tt, s, n_seq, **a2s, u1_local, 2023-09-25T16:50:16,562 | ^~~~ 2023-09-25T16:50:17,223 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/bs_wrappers.o -fopenmp 2023-09-25T16:50:17,595 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2023-09-25T16:50:17,875 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2023-09-25T16:50:17,876 src/ViennaRNA/c_plex.c:358:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:17,877 358 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T16:50:17,877 | ^~~~~~~ 2023-09-25T16:50:17,901 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2023-09-25T16:50:17,902 src/ViennaRNA/c_plex.c:942:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:17,903 942 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:50:17,904 | ^~ 2023-09-25T16:50:17,906 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2023-09-25T16:50:17,906 src/ViennaRNA/c_plex.c:993:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:17,907 993 | if (dL <= strlen(test.structure) - l1 - 1) 2023-09-25T16:50:17,908 | ^~ 2023-09-25T16:50:17,914 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2023-09-25T16:50:17,915 src/ViennaRNA/c_plex.c:1014:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:17,915 1014 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:50:17,916 | ^~ 2023-09-25T16:50:17,942 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2023-09-25T16:50:17,944 src/ViennaRNA/c_plex.c:1622:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:17,945 1622 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:50:17,945 | ^~ 2023-09-25T16:50:17,947 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2023-09-25T16:50:17,948 src/ViennaRNA/c_plex.c:1676:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:17,949 1676 | if (dL <= strlen(test.structure) - l1 - 1) { 2023-09-25T16:50:17,949 | ^~ 2023-09-25T16:50:20,414 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T16:50:20,415 src/ViennaRNA/c_plex.c:978:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:20,416 978 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2023-09-25T16:50:20,416 | ^ 2023-09-25T16:50:20,417 src/ViennaRNA/c_plex.c:533:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:50:20,417 533 | int max_pos_j; 2023-09-25T16:50:20,418 | ^~~~~~~~~ 2023-09-25T16:50:20,418 In function ‘plot_max_CXS’, 2023-09-25T16:50:20,419 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:825:5: 2023-09-25T16:50:20,420 src/ViennaRNA/c_plex.c:972:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:20,420 972 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2023-09-25T16:50:20,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:50:20,421 973 | ((double)max) / 100); 2023-09-25T16:50:20,422 | ~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:50:20,422 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2023-09-25T16:50:20,423 src/ViennaRNA/c_plex.c:532:13: note: ‘max_pos’ was declared here 2023-09-25T16:50:20,424 532 | int max_pos; /* get position of the best hit */ 2023-09-25T16:50:20,424 | ^~~~~~~ 2023-09-25T16:50:20,425 src/ViennaRNA/c_plex.c:801:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:20,425 801 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:50:20,426 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:50:20,427 src/ViennaRNA/c_plex.c:535:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:50:20,427 535 | int min_j_colonne; 2023-09-25T16:50:20,428 | ^~~~~~~~~~~~~ 2023-09-25T16:50:21,802 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2023-09-25T16:50:21,803 src/ViennaRNA/c_plex.c:1659:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:50:21,804 1659 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2023-09-25T16:50:21,804 | ^ 2023-09-25T16:50:21,805 src/ViennaRNA/c_plex.c:1271:7: note: ‘max_pos’ was declared here 2023-09-25T16:50:21,806 1271 | int max_pos; /* get position of the best hit */ 2023-09-25T16:50:21,806 | ^~~~~~~ 2023-09-25T16:50:23,091 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/centroid.o -fopenmp 2023-09-25T16:50:23,599 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/cofold.o -fopenmp 2023-09-25T16:50:23,974 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics.o -fopenmp 2023-09-25T16:50:24,113 src/ViennaRNA/combinatorics.c: In function ‘sawada_fast’: 2023-09-25T16:50:24,114 src/ViennaRNA/combinatorics.c:727:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:24,115 727 | if (content[k - 1].count == n - t + 1) { 2023-09-25T16:50:24,116 | ^~ 2023-09-25T16:50:24,116 src/ViennaRNA/combinatorics.c:728:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:24,116 728 | if ((content[k - 1].count == r[t - p]) && (n % p == 0)) 2023-09-25T16:50:24,117 | ^~ 2023-09-25T16:50:24,117 src/ViennaRNA/combinatorics.c:730:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:24,118 730 | else if (content[k - 1].count > r[t - p]) 2023-09-25T16:50:24,118 | ^ 2023-09-25T16:50:24,119 src/ViennaRNA/combinatorics.c:732:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:24,119 732 | } else if (content[0].count != (n - t + 1)) { 2023-09-25T16:50:24,120 | ^~ 2023-09-25T16:50:24,791 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/commands.o -fopenmp 2023-09-25T16:50:25,007 src/ViennaRNA/commands.c: In function ‘parse_constraints_line’: 2023-09-25T16:50:25,008 src/ViennaRNA/commands.c:822:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,009 822 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,009 | ^~ 2023-09-25T16:50:25,010 src/ViennaRNA/commands.c:830:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,011 830 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,011 | ^~ 2023-09-25T16:50:25,012 src/ViennaRNA/commands.c:840:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,013 840 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,013 | ^~ 2023-09-25T16:50:25,014 src/ViennaRNA/commands.c:851:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,015 851 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,015 | ^~ 2023-09-25T16:50:25,017 src/ViennaRNA/commands.c:857:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,018 857 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,018 | ^~ 2023-09-25T16:50:25,019 src/ViennaRNA/commands.c:869:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,020 869 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,020 | ^~ 2023-09-25T16:50:25,021 src/ViennaRNA/commands.c:886:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,022 886 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,022 | ^~ 2023-09-25T16:50:25,023 src/ViennaRNA/commands.c:895:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:50:25,024 895 | if (pp == strlen(buf)) { 2023-09-25T16:50:25,025 | ^~ 2023-09-25T16:50:25,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2023-09-25T16:50:25,927 src/ViennaRNA/concentrations.c:229:1: warning: ‘conc_complexes’ defined but not used [-Wunused-function] 2023-09-25T16:50:25,927 229 | conc_complexes(double *L, 2023-09-25T16:50:25,928 | ^~~~~~~~~~~~~~ 2023-09-25T16:50:26,080 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/SHAPE.o -fopenmp 2023-09-25T16:50:26,296 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan’: 2023-09-25T16:50:26,297 src/ViennaRNA/constraints/SHAPE.c:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:26,298 327 | for (i = 1; i <= vc->length; ++i) 2023-09-25T16:50:26,298 | ^~ 2023-09-25T16:50:26,299 src/ViennaRNA/constraints/SHAPE.c: In function ‘vrna_sc_add_SHAPE_deigan_ali’: 2023-09-25T16:50:26,300 src/ViennaRNA/constraints/SHAPE.c:410:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:26,301 410 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:50:26,301 | ^~ 2023-09-25T16:50:26,302 src/ViennaRNA/constraints/SHAPE.c:418:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:26,303 418 | } else if (position > vc->length) { 2023-09-25T16:50:26,304 | ^ 2023-09-25T16:50:26,305 src/ViennaRNA/constraints/SHAPE.c:456:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:26,306 456 | for (gaps = 0, i = 1; i <= vc->length; i++) { 2023-09-25T16:50:26,307 | ^~ 2023-09-25T16:50:26,916 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2023-09-25T16:50:27,173 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2023-09-25T16:50:27,391 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up’: 2023-09-25T16:50:27,392 src/ViennaRNA/constraints/hard.c:303:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,393 303 | if ((i <= 0) || (i > fc->length)) { 2023-09-25T16:50:27,393 | ^ 2023-09-25T16:50:27,394 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_up_batch’: 2023-09-25T16:50:27,394 src/ViennaRNA/constraints/hard.c:375:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,395 375 | if ((pos <= 0) || (pos > fc->length)) 2023-09-25T16:50:27,395 | ^ 2023-09-25T16:50:27,396 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_nonspecific’: 2023-09-25T16:50:27,397 src/ViennaRNA/constraints/hard.c:455:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,397 455 | if ((i <= 0) || (i > vc->length)) { 2023-09-25T16:50:27,398 | ^ 2023-09-25T16:50:27,398 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp_strand’: 2023-09-25T16:50:27,399 src/ViennaRNA/constraints/hard.c:513:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,399 513 | ((j - i - 1) < turn)) 2023-09-25T16:50:27,400 | ^ 2023-09-25T16:50:27,401 src/ViennaRNA/constraints/hard.c: In function ‘vrna_hc_add_bp’: 2023-09-25T16:50:27,402 src/ViennaRNA/constraints/hard.c:549:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,402 549 | if ((i <= 0) || (j <= i) || (j > vc->length)) { 2023-09-25T16:50:27,403 | ^ 2023-09-25T16:50:27,404 src/ViennaRNA/constraints/hard.c: In function ‘default_pair_constraint’: 2023-09-25T16:50:27,405 src/ViennaRNA/constraints/hard.c:727:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,405 727 | (j < fc->length) && 2023-09-25T16:50:27,406 | ^ 2023-09-25T16:50:27,407 src/ViennaRNA/constraints/hard.c:760:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,407 760 | (j < fc->length) && 2023-09-25T16:50:27,408 | ^ 2023-09-25T16:50:27,424 src/ViennaRNA/constraints/hard.c: In function ‘populate_hc_bp’: 2023-09-25T16:50:27,425 src/ViennaRNA/constraints/hard.c:1076:51: warning: variable ‘turn’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:27,425 1076 | unsigned int max_span, maxdist, j, k, p, n, l, turn, strand, sj, sl, actual_i, actual_j, 2023-09-25T16:50:27,426 | ^~~~ 2023-09-25T16:50:27,430 In file included from src/ViennaRNA/constraints/hard.c:18: 2023-09-25T16:50:27,431 src/ViennaRNA/constraints/hard.c: In function ‘apply_DB_constraint’: 2023-09-25T16:50:27,432 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,432 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:50:27,433 | ^ 2023-09-25T16:50:27,433 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T16:50:27,434 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T16:50:27,435 | ^~~~ 2023-09-25T16:50:27,435 src/ViennaRNA/utils/basic.h:111:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,436 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:50:27,437 | ^~~ 2023-09-25T16:50:27,437 src/ViennaRNA/constraints/hard.c:1656:24: note: in expansion of macro ‘MAX2’ 2023-09-25T16:50:27,438 1656 | for (l = MAX2(j + min_loop_size, cut); l <= length; l++) { 2023-09-25T16:50:27,438 | ^~~~ 2023-09-25T16:50:27,439 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,439 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,439 | ^ 2023-09-25T16:50:27,440 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,440 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T16:50:27,441 | ^~~~ 2023-09-25T16:50:27,441 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,442 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,442 | ^~~ 2023-09-25T16:50:27,442 src/ViennaRNA/constraints/hard.c:1670:31: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,443 1670 | for (l = 1; l < MIN2(cut, j - min_loop_size); l++) { 2023-09-25T16:50:27,443 | ^~~~ 2023-09-25T16:50:27,444 src/ViennaRNA/constraints/hard.c:1695:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,445 1695 | for (l = 1; l < j; l++) { 2023-09-25T16:50:27,445 | ^ 2023-09-25T16:50:27,446 src/ViennaRNA/constraints/hard.c:1709:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,446 1709 | for (l = j + 1; l < cut; l++) { 2023-09-25T16:50:27,447 | ^ 2023-09-25T16:50:27,448 src/ViennaRNA/constraints/hard.c:1723:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,449 1723 | for (l = cut; l < j; l++) { 2023-09-25T16:50:27,449 | ^ 2023-09-25T16:50:27,450 src/ViennaRNA/constraints/hard.c:1779:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,451 1779 | for (i = 0; i < num_bp_unspecific; i++) 2023-09-25T16:50:27,451 | ^ 2023-09-25T16:50:27,452 src/ViennaRNA/constraints/hard.c:1786:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:27,452 1786 | for (i = 0; i < num_bp; i++) 2023-09-25T16:50:27,453 | ^ 2023-09-25T16:50:27,453 src/ViennaRNA/constraints/hard.c: In function ‘hc_update_up’: 2023-09-25T16:50:27,454 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,454 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,455 | ^ 2023-09-25T16:50:27,455 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,456 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T16:50:27,456 | ^~~~ 2023-09-25T16:50:27,457 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,458 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,458 | ^~~ 2023-09-25T16:50:27,459 src/ViennaRNA/constraints/hard.c:1873:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,459 1873 | hc->up_ext[i] = MIN2(n, 1 + hc->up_ext[i + 1]); 2023-09-25T16:50:27,460 | ^~~~ 2023-09-25T16:50:27,460 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,460 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,461 | ^ 2023-09-25T16:50:27,461 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,461 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T16:50:27,462 | ^~~~ 2023-09-25T16:50:27,462 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,463 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,463 | ^~~ 2023-09-25T16:50:27,464 src/ViennaRNA/constraints/hard.c:1883:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,464 1883 | hc->up_hp[i] = MIN2(n, 1 + hc->up_hp[i + 1]); 2023-09-25T16:50:27,465 | ^~~~ 2023-09-25T16:50:27,465 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,466 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,467 | ^ 2023-09-25T16:50:27,467 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,468 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T16:50:27,469 | ^~~~ 2023-09-25T16:50:27,469 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,470 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,470 | ^~~ 2023-09-25T16:50:27,471 src/ViennaRNA/constraints/hard.c:1893:29: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,472 1893 | hc->up_int[i] = MIN2(n, 1 + hc->up_int[i + 1]); 2023-09-25T16:50:27,472 | ^~~~ 2023-09-25T16:50:27,473 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:27,474 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,474 | ^ 2023-09-25T16:50:27,475 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,475 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T16:50:27,476 | ^~~~ 2023-09-25T16:50:27,476 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:50:27,477 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:50:27,478 | ^~~ 2023-09-25T16:50:27,478 src/ViennaRNA/constraints/hard.c:1903:28: note: in expansion of macro ‘MIN2’ 2023-09-25T16:50:27,479 1903 | hc->up_ml[i] = MIN2(n, 1 + hc->up_ml[i + 1]); 2023-09-25T16:50:27,480 | ^~~~ 2023-09-25T16:50:30,386 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2023-09-25T16:50:31,374 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2023-09-25T16:50:31,551 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘vrna_sc_mod’: 2023-09-25T16:50:31,551 src/ViennaRNA/constraints/sc_cb_mod.c:479:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:31,552 479 | ((msite - j - 1) >= md->min_loop_size)) { 2023-09-25T16:50:31,552 | ^~ 2023-09-25T16:50:31,553 src/ViennaRNA/constraints/sc_cb_mod.c:482:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:31,553 482 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T16:50:31,554 | ^~ 2023-09-25T16:50:31,555 src/ViennaRNA/constraints/sc_cb_mod.c:493:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:31,556 493 | ((j - msite - 1) >= md->min_loop_size)) { 2023-09-25T16:50:31,556 | ^~ 2023-09-25T16:50:31,557 src/ViennaRNA/constraints/sc_cb_mod.c:496:42: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:31,557 496 | if (fc->sequence_encoding[j] == pp_enc) { 2023-09-25T16:50:31,558 | ^~ 2023-09-25T16:50:31,559 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2023-09-25T16:50:31,559 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:31,560 761 | char nt[MAX_ALPHABET] = { 2023-09-25T16:50:31,561 | ^~ 2023-09-25T16:50:31,561 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2023-09-25T16:50:31,562 src/ViennaRNA/constraints/sc_cb_mod.c:856:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:31,563 856 | char nt[MAX_ALPHABET] = { 2023-09-25T16:50:31,563 | ^~ 2023-09-25T16:50:31,565 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2023-09-25T16:50:31,565 src/ViennaRNA/constraints/sc_cb_mod.c:985:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:31,566 985 | char nt[MAX_ALPHABET] = { 2023-09-25T16:50:31,567 | ^~ 2023-09-25T16:50:31,567 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2023-09-25T16:50:31,568 src/ViennaRNA/constraints/sc_cb_mod.c:1149:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:31,569 1149 | char nt[MAX_ALPHABET] = { 2023-09-25T16:50:31,569 | ^~ 2023-09-25T16:50:33,963 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2023-09-25T16:50:34,661 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2023-09-25T16:50:44,906 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2023-09-25T16:50:45,122 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_bp’: 2023-09-25T16:50:45,123 src/ViennaRNA/constraints/soft.c:401:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,124 401 | (i > fc->length) || 2023-09-25T16:50:45,125 | ^ 2023-09-25T16:50:45,125 src/ViennaRNA/constraints/soft.c:403:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,126 403 | (j > fc->length)) { 2023-09-25T16:50:45,127 | ^ 2023-09-25T16:50:45,128 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_up’: 2023-09-25T16:50:45,128 src/ViennaRNA/constraints/soft.c:452:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,129 452 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:50:45,130 | ^ 2023-09-25T16:50:45,131 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack’: 2023-09-25T16:50:45,131 src/ViennaRNA/constraints/soft.c:547:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,132 547 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:50:45,133 | ^ 2023-09-25T16:50:45,133 src/ViennaRNA/constraints/soft.c: In function ‘vrna_sc_add_stack_comparative’: 2023-09-25T16:50:45,134 src/ViennaRNA/constraints/soft.c:582:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,135 582 | if ((i < 1) || (i > fc->length)) { 2023-09-25T16:50:45,135 | ^ 2023-09-25T16:50:45,148 src/ViennaRNA/constraints/soft.c: In function ‘prepare_sc_stack_pf’: 2023-09-25T16:50:45,149 src/ViennaRNA/constraints/soft.c:1416:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,150 1416 | for (i = 0; i <= fc->length; ++i) 2023-09-25T16:50:45,150 | ^~ 2023-09-25T16:50:45,151 src/ViennaRNA/constraints/soft.c:1420:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,152 1420 | for (i = 1; i <= fc->length; ++i) 2023-09-25T16:50:45,152 | ^~ 2023-09-25T16:50:45,153 src/ViennaRNA/constraints/soft.c:1436:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,153 1436 | for (i = 0; i <= fc->a2s[s][fc->length]; i++) 2023-09-25T16:50:45,154 | ^~ 2023-09-25T16:50:45,155 src/ViennaRNA/constraints/soft.c:1440:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:45,155 1440 | for (i = 1; i <= fc->a2s[s][fc->length]; ++i) 2023-09-25T16:50:45,156 | ^~ 2023-09-25T16:50:46,614 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2023-09-25T16:50:47,111 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2023-09-25T16:50:47,287 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2023-09-25T16:50:47,433 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2023-09-25T16:50:47,586 src/ViennaRNA/datastructures/char_stream.c: In function ‘vrna_cstr_vprintf’: 2023-09-25T16:50:47,587 src/ViennaRNA/datastructures/char_stream.c:195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:47,588 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T16:50:47,589 | ^ 2023-09-25T16:50:47,589 src/ViennaRNA/datastructures/char_stream.c:195:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:47,590 195 | if ((size_new > 0) && (l1 < SIZE_MAX) && ((SIZE_MAX - l1) > l2)) { 2023-09-25T16:50:47,591 | ^ 2023-09-25T16:50:48,069 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2023-09-25T16:50:48,227 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_get’: 2023-09-25T16:50:48,228 src/ViennaRNA/datastructures/hash_tables.c:126:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,229 126 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:50:48,230 | ^ 2023-09-25T16:50:48,230 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_insert’: 2023-09-25T16:50:48,231 src/ViennaRNA/datastructures/hash_tables.c:157:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,231 157 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:50:48,232 | ^ 2023-09-25T16:50:48,232 src/ViennaRNA/datastructures/hash_tables.c:165:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,233 165 | if (i >= entries->length) { 2023-09-25T16:50:48,233 | ^~ 2023-09-25T16:50:48,234 src/ViennaRNA/datastructures/hash_tables.c:166:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,234 166 | if (i >= entries->allocated_length) { 2023-09-25T16:50:48,235 | ^~ 2023-09-25T16:50:48,235 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_clear’: 2023-09-25T16:50:48,236 src/ViennaRNA/datastructures/hash_tables.c:204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,237 204 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:50:48,238 | ^ 2023-09-25T16:50:48,239 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_remove’: 2023-09-25T16:50:48,239 src/ViennaRNA/datastructures/hash_tables.c:249:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:50:48,240 249 | for (i = 0; i < entries->length; i++) { 2023-09-25T16:50:48,241 | ^ 2023-09-25T16:50:48,242 src/ViennaRNA/datastructures/hash_tables.c: In function ‘vrna_ht_db_hash_func’: 2023-09-25T16:50:48,242 src/ViennaRNA/datastructures/hash_tables.c:339:7: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2023-09-25T16:50:48,243 339 | k = ((vrna_ht_entry_db_t *)x)->structure; 2023-09-25T16:50:48,244 | ^ 2023-09-25T16:50:48,244 src/ViennaRNA/datastructures/hash_tables.c:340:39: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 2023-09-25T16:50:48,245 340 | len = length = (unsigned int)strlen(k); 2023-09-25T16:50:48,246 | ^ 2023-09-25T16:50:48,246 | | 2023-09-25T16:50:48,247 | unsigned char * 2023-09-25T16:50:48,248 In file included from src/ViennaRNA/datastructures/hash_tables.c:6: 2023-09-25T16:50:48,248 /usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘unsigned char *’ 2023-09-25T16:50:48,249 407 | extern size_t strlen (const char *__s) 2023-09-25T16:50:48,249 | ~~~~~~~~~~~~^~~ 2023-09-25T16:50:48,556 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2023-09-25T16:50:49,035 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2023-09-25T16:50:49,326 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2023-09-25T16:50:49,651 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2023-09-25T16:50:49,779 src/ViennaRNA/datastructures/string.c: In function ‘vrna_string_make_space_for’: 2023-09-25T16:50:49,780 src/ViennaRNA/datastructures/string.c:91:21: warning: variable ‘old_size’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:49,781 91 | size_t available, old_size, new_size; 2023-09-25T16:50:49,782 | ^~~~~~~~ 2023-09-25T16:50:49,894 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2023-09-25T16:50:49,950 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dp_matrices.o -fopenmp 2023-09-25T16:50:51,934 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2023-09-25T16:50:52,190 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2023-09-25T16:50:52,191 src/ViennaRNA/duplex.c:435:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:52,192 435 | if (strlen(s1[s]) != n1) 2023-09-25T16:50:52,192 | ^~ 2023-09-25T16:50:52,193 src/ViennaRNA/duplex.c:438:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:52,194 438 | if (strlen(s2[s]) != n2) 2023-09-25T16:50:52,194 | ^~ 2023-09-25T16:50:52,196 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2023-09-25T16:50:52,197 src/ViennaRNA/duplex.c:556:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:52,198 556 | if (strlen(s1[s]) != n1) 2023-09-25T16:50:52,198 | ^~ 2023-09-25T16:50:52,199 src/ViennaRNA/duplex.c:559:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:50:52,199 559 | if (strlen(s2[s]) != n2) 2023-09-25T16:50:52,200 | ^~ 2023-09-25T16:50:54,598 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/equilibrium_probs.o -fopenmp 2023-09-25T16:50:54,901 In file included from src/ViennaRNA/equilibrium_probs.c:37: 2023-09-25T16:50:54,902 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:50:54,902 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,903 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:50:54,903 | ^ 2023-09-25T16:50:54,904 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:50:54,905 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,905 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,906 | ^ 2023-09-25T16:50:54,906 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:50:54,907 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,908 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,908 | ^ 2023-09-25T16:50:54,909 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:50:54,910 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,910 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:50:54,911 | ^ 2023-09-25T16:50:54,911 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:50:54,912 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,913 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,913 | ^ 2023-09-25T16:50:54,914 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:50:54,915 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,915 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,916 | ^ 2023-09-25T16:50:54,923 In file included from src/ViennaRNA/equilibrium_probs.c:39: 2023-09-25T16:50:54,924 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:50:54,925 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,925 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,927 | ^ 2023-09-25T16:50:54,927 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:50:54,927 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,928 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,928 | ^ 2023-09-25T16:50:54,929 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:50:54,929 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,930 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,930 | ^ 2023-09-25T16:50:54,931 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:50:54,931 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,932 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,932 | ^ 2023-09-25T16:50:54,933 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:50:54,933 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,934 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,935 | ^ 2023-09-25T16:50:54,935 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:50:54,936 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,936 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,937 | ^ 2023-09-25T16:50:54,938 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:50:54,938 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:54,939 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:50:54,939 | ^~ 2023-09-25T16:50:54,940 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:50:54,941 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,941 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,942 | ^ 2023-09-25T16:50:54,943 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:50:54,943 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,944 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:50:54,944 | ^ 2023-09-25T16:50:54,965 src/ViennaRNA/equilibrium_probs.c: In function ‘vrna_ensemble_defect_pt’: 2023-09-25T16:50:54,966 src/ViennaRNA/equilibrium_probs.c:406:14: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:54,966 406 | (pt[0] == fc->length) && 2023-09-25T16:50:54,967 | ^~ 2023-09-25T16:50:54,968 src/ViennaRNA/equilibrium_probs.c:428:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:54,969 428 | else if (pt[i] > i) 2023-09-25T16:50:54,970 | ^ 2023-09-25T16:50:54,978 src/ViennaRNA/equilibrium_probs.c: In function ‘get_ml_helper_arrays’: 2023-09-25T16:50:54,978 src/ViennaRNA/equilibrium_probs.c:958:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,979 958 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T16:50:54,979 | ^ 2023-09-25T16:50:54,980 src/ViennaRNA/equilibrium_probs.c:959:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:54,980 959 | if (ml_helpers->ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:50:54,981 | ^ 2023-09-25T16:50:54,981 src/ViennaRNA/equilibrium_probs.c:965:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,982 965 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:50:54,982 | ^~ 2023-09-25T16:50:54,983 src/ViennaRNA/equilibrium_probs.c:971:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,983 971 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:50:54,984 | ^~ 2023-09-25T16:50:54,984 src/ViennaRNA/equilibrium_probs.c: In function ‘free_ml_helper_arrays’: 2023-09-25T16:50:54,985 src/ViennaRNA/equilibrium_probs.c:989:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,986 989 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:50:54,987 | ^~ 2023-09-25T16:50:54,987 src/ViennaRNA/equilibrium_probs.c: In function ‘rotate_ml_helper_arrays_outer’: 2023-09-25T16:50:54,988 src/ViennaRNA/equilibrium_probs.c:1019:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:54,989 1019 | for (u = 0; u <= ml_helpers->ud_max_size; u++) 2023-09-25T16:50:54,989 | ^~ 2023-09-25T16:50:55,022 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y5’: 2023-09-25T16:50:55,024 src/ViennaRNA/equilibrium_probs.c:2281:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:55,025 2281 | if ((se[s] < l) && 2023-09-25T16:50:55,026 | ^ 2023-09-25T16:50:55,029 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_update_Y3’: 2023-09-25T16:50:55,031 src/ViennaRNA/equilibrium_probs.c:2391:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:55,032 2391 | if (start == l + 1) { 2023-09-25T16:50:55,032 | ^~ 2023-09-25T16:50:55,036 src/ViennaRNA/equilibrium_probs.c: In function ‘multistrand_contrib’: 2023-09-25T16:50:55,038 src/ViennaRNA/equilibrium_probs.c:2505:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:55,038 2505 | else if (start == l + 1) 2023-09-25T16:50:55,039 | ^~ 2023-09-25T16:50:55,040 src/ViennaRNA/equilibrium_probs.c:2507:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:50:55,041 2507 | else if ((start > l + 1) && 2023-09-25T16:50:55,041 | ^ 2023-09-25T16:50:55,044 src/ViennaRNA/equilibrium_probs.c:2475:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:50:55,044 2475 | sc_ext_exp_split sc_split; 2023-09-25T16:50:55,045 | ^~~~~~~~ 2023-09-25T16:50:55,063 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops’: 2023-09-25T16:50:55,065 src/ViennaRNA/equilibrium_probs.c:3147:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:55,066 3147 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:50:55,066 | ^ 2023-09-25T16:50:55,082 src/ViennaRNA/equilibrium_probs.c: In function ‘ud_outside_mb_loops2’: 2023-09-25T16:50:55,085 src/ViennaRNA/equilibrium_probs.c:3443:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:50:55,085 3443 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:50:55,086 | ^ 2023-09-25T16:51:06,433 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval.o -fopenmp 2023-09-25T16:51:06,733 src/ViennaRNA/eval.c: In function ‘energy_of_extLoop_pt’: 2023-09-25T16:51:06,733 src/ViennaRNA/eval.c:653:34: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,734 653 | if ((pt[i] != 0) && (pt[i] > i)) { 2023-09-25T16:51:06,735 | ^ 2023-09-25T16:51:06,740 src/ViennaRNA/eval.c: In function ‘energy_of_ext_loop_components’: 2023-09-25T16:51:06,741 src/ViennaRNA/eval.c:919:19: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,742 919 | if (pt[i] > i) { 2023-09-25T16:51:06,742 | ^ 2023-09-25T16:51:06,755 src/ViennaRNA/eval.c: In function ‘energy_of_ml_pt’: 2023-09-25T16:51:06,756 src/ViennaRNA/eval.c:1673:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,756 1673 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:51:06,757 | ^ 2023-09-25T16:51:06,758 src/ViennaRNA/eval.c:1711:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,759 1711 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,759 | ^ 2023-09-25T16:51:06,760 src/ViennaRNA/eval.c:1719:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,761 1719 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:51:06,761 | ^ 2023-09-25T16:51:06,763 src/ViennaRNA/eval.c:1741:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,763 1741 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,764 | ^ 2023-09-25T16:51:06,764 src/ViennaRNA/eval.c:1756:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,765 1756 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,766 | ^ 2023-09-25T16:51:06,766 src/ViennaRNA/eval.c:1764:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,767 1764 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:51:06,768 | ^ 2023-09-25T16:51:06,768 src/ViennaRNA/eval.c:1772:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,769 1772 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,769 | ^ 2023-09-25T16:51:06,771 src/ViennaRNA/eval.c:1824:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,771 1824 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,772 | ^ 2023-09-25T16:51:06,773 src/ViennaRNA/eval.c:1841:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,773 1841 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,774 | ^ 2023-09-25T16:51:06,775 src/ViennaRNA/eval.c:1849:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,776 1849 | for (ss = 0; ss < n_seq; ss++) 2023-09-25T16:51:06,776 | ^ 2023-09-25T16:51:06,777 src/ViennaRNA/eval.c:1856:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,777 1856 | for (ss = 0; ss < n_seq; ss++) { 2023-09-25T16:51:06,778 | ^ 2023-09-25T16:51:06,781 src/ViennaRNA/eval.c:1935:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,781 1935 | while (p <= (unsigned int)pt[0] && pt[p] == 0) 2023-09-25T16:51:06,782 | ^~ 2023-09-25T16:51:06,783 src/ViennaRNA/eval.c:1946:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,784 1946 | if (p == (unsigned int)pt[0] + 1) { 2023-09-25T16:51:06,785 | ^~ 2023-09-25T16:51:06,786 src/ViennaRNA/eval.c:1962:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,786 1962 | if ((sn[i1] == sn[i1 + 1]) && (i1 < (unsigned int)s[0])) 2023-09-25T16:51:06,787 | ^ 2023-09-25T16:51:06,789 src/ViennaRNA/eval.c:2010:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:06,789 2010 | if (i == (unsigned int)pt[p]) 2023-09-25T16:51:06,790 | ^~ 2023-09-25T16:51:10,112 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_covariance.o -fopenmp 2023-09-25T16:51:10,541 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval_wrappers.o -fopenmp 2023-09-25T16:51:11,324 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold.o -fopenmp 2023-09-25T16:51:12,106 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2023-09-25T16:51:12,364 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_free’: 2023-09-25T16:51:12,365 src/ViennaRNA/fold_compound.c:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:12,365 137 | for (s = 0; s < fc->n_seq; s++) { 2023-09-25T16:51:12,366 | ^ 2023-09-25T16:51:12,366 src/ViennaRNA/fold_compound.c:156:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:12,367 156 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:51:12,367 | ^ 2023-09-25T16:51:12,368 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_comparative2’: 2023-09-25T16:51:12,369 src/ViennaRNA/fold_compound.c:311:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:12,369 311 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T16:51:12,370 | ^ 2023-09-25T16:51:12,371 src/ViennaRNA/fold_compound.c:318:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:51:12,371 318 | if (strlen(sequences[s]) != length) { 2023-09-25T16:51:12,372 | ^~ 2023-09-25T16:51:12,373 src/ViennaRNA/fold_compound.c: In function ‘vrna_fold_compound_TwoD’: 2023-09-25T16:51:12,374 src/ViennaRNA/fold_compound.c:417:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:12,374 417 | } else if (length > vrna_sequence_length_max(options)) { 2023-09-25T16:51:12,375 | ^ 2023-09-25T16:51:13,113 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/gquad.o -fopenmp 2023-09-25T16:51:13,364 In file included from src/ViennaRNA/gquad.c:21: 2023-09-25T16:51:13,364 src/ViennaRNA/gquad.c: In function ‘get_gquad_pf_matrix_comparative’: 2023-09-25T16:51:13,365 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:13,366 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:13,366 | ^ 2023-09-25T16:51:13,367 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:13,368 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,368 | ^~~~ 2023-09-25T16:51:13,369 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,370 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,370 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,371 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:51:13,371 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:13,372 | ^~~ 2023-09-25T16:51:13,372 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:13,373 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,373 | ^~~~ 2023-09-25T16:51:13,374 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,374 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,374 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,375 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:13,375 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,376 | ^~ 2023-09-25T16:51:13,376 src/ViennaRNA/gquad.c:605:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,377 605 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,377 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,378 src/ViennaRNA/gquad.c: In function ‘get_gquad_ali_matrix’: 2023-09-25T16:51:13,378 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:13,379 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:13,380 | ^ 2023-09-25T16:51:13,380 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:13,381 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,382 | ^~~~ 2023-09-25T16:51:13,382 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,383 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,384 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,384 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:51:13,385 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:13,386 | ^~~ 2023-09-25T16:51:13,387 src/ViennaRNA/gquad.c:40:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:13,387 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,388 | ^~~~ 2023-09-25T16:51:13,389 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,389 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,390 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,391 src/ViennaRNA/gquad.c:40:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:13,391 40 | (b) <= MIN2((d), (a) + VRNA_GQUAD_MAX_BOX_SIZE - 1); \ 2023-09-25T16:51:13,392 | ^~ 2023-09-25T16:51:13,392 src/ViennaRNA/gquad.c:647:3: note: in expansion of macro ‘FOR_EACH_GQUAD’ 2023-09-25T16:51:13,393 647 | FOR_EACH_GQUAD(i, j, 1, n){ 2023-09-25T16:51:13,394 | ^~~~~~~~~~~~~~ 2023-09-25T16:51:13,397 src/ViennaRNA/gquad.c: In function ‘E_gquad_ali_penalty’: 2023-09-25T16:51:13,398 src/ViennaRNA/gquad.c:1338:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:13,398 1338 | if (mm[1] > P->gquadLayerMismatchMax) 2023-09-25T16:51:13,399 | ^ 2023-09-25T16:51:13,400 src/ViennaRNA/gquad.c: In function ‘exp_E_gquad_ali_penalty’: 2023-09-25T16:51:13,400 src/ViennaRNA/gquad.c:1357:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:13,401 1357 | if (mm[1] > pf->gquadLayerMismatchMax) 2023-09-25T16:51:13,401 | ^ 2023-09-25T16:51:13,404 src/ViennaRNA/gquad.c: In function ‘count_gquad_layer_mismatches’: 2023-09-25T16:51:13,405 src/ViennaRNA/gquad.c:1439:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:13,405 1439 | if (mismatch >= 2 * (L - 1)) 2023-09-25T16:51:13,406 | ^~ 2023-09-25T16:51:15,361 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar.o -fopenmp 2023-09-25T16:51:15,685 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2023-09-25T16:51:16,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse.o -fopenmp 2023-09-25T16:51:16,277 src/ViennaRNA/inverse.c: In function ‘adaptive_walk’: 2023-09-25T16:51:16,278 src/ViennaRNA/inverse.c:114:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:51:16,278 114 | if (strlen(target) != len) 2023-09-25T16:51:16,279 | ^~ 2023-09-25T16:51:16,283 src/ViennaRNA/inverse.c: In function ‘make_ptable’: 2023-09-25T16:51:16,284 src/ViennaRNA/inverse.c:340:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:16,285 340 | for (i = 0; i < strlen(structure); i++) { 2023-09-25T16:51:16,286 | ^ 2023-09-25T16:51:16,286 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T16:51:16,287 src/ViennaRNA/inverse.c:392:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:51:16,288 392 | if (strlen(start) != len) 2023-09-25T16:51:16,288 | ^~ 2023-09-25T16:51:16,290 src/ViennaRNA/inverse.c: In function ‘make_start’: 2023-09-25T16:51:16,291 src/ViennaRNA/inverse.c:514:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:16,291 514 | for (i = 0; i < strlen(start); i++) 2023-09-25T16:51:16,292 | ^ 2023-09-25T16:51:16,293 src/ViennaRNA/inverse.c:516:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:16,293 516 | for (i = 0; i < strlen(symbolset); i++) 2023-09-25T16:51:16,294 | ^ 2023-09-25T16:51:17,165 src/ViennaRNA/inverse.c: In function ‘inverse_fold’: 2023-09-25T16:51:17,166 src/ViennaRNA/inverse.c:369:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2023-09-25T16:51:17,166 369 | strncpy(wstruct, structure + i, j - i + 1); \ 2023-09-25T16:51:17,167 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:17,167 src/ViennaRNA/inverse.c:423:7: note: in expansion of macro ‘WALK’ 2023-09-25T16:51:17,168 423 | WALK(0, len - 1); 2023-09-25T16:51:17,168 | ^~~~ 2023-09-25T16:51:17,169 src/ViennaRNA/inverse.c:391:9: note: length computed here 2023-09-25T16:51:17,169 391 | len = strlen(structure); 2023-09-25T16:51:17,170 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:51:17,410 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2023-09-25T16:51:17,623 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2023-09-25T16:51:17,624 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:17,624 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2023-09-25T16:51:17,625 | ^ 2023-09-25T16:51:17,631 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2023-09-25T16:51:17,632 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:17,632 600 | if ((length > 0) && (r - 1 == length)) 2023-09-25T16:51:17,633 | ^~ 2023-09-25T16:51:17,643 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:51:17,644 src/ViennaRNA/io/file_formats.c:919:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:51:17,645 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:51:17,645 | ^~~~ 2023-09-25T16:51:18,384 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:51:18,385 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T16:51:18,385 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:18,386 src/ViennaRNA/io/file_formats.c:919:41: note: ‘tok6’ was declared here 2023-09-25T16:51:18,386 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:51:18,387 | ^~~~ 2023-09-25T16:51:18,387 src/ViennaRNA/io/file_formats.c:1056:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:51:18,388 1056 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2023-09-25T16:51:18,389 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:18,389 src/ViennaRNA/io/file_formats.c:919:35: note: ‘tok5’ was declared here 2023-09-25T16:51:18,390 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:51:18,390 | ^~~~ 2023-09-25T16:51:18,391 In function ‘process_ct_nt_line’, 2023-09-25T16:51:18,391 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T16:51:18,392 src/ViennaRNA/io/file_formats.c:1236:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:51:18,393 1236 | (predecessor == 0)) { 2023-09-25T16:51:18,394 | ~~~~~~~~~~~~~^~~~~ 2023-09-25T16:51:18,394 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:51:18,395 src/ViennaRNA/io/file_formats.c:919:23: note: ‘tok3’ was declared here 2023-09-25T16:51:18,395 919 | long tok1, tok3, tok4, tok5, tok6; 2023-09-25T16:51:18,396 | ^~~~ 2023-09-25T16:51:18,396 In function ‘process_ct_nt_line’, 2023-09-25T16:51:18,397 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1056:12: 2023-09-25T16:51:18,397 src/ViennaRNA/io/file_formats.c:1242:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:51:18,398 1242 | data->sequence[data->sequence_pos++] = nucleotide; 2023-09-25T16:51:18,398 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:51:18,399 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2023-09-25T16:51:18,399 src/ViennaRNA/io/file_formats.c:916:33: note: ‘tok2’ was declared here 2023-09-25T16:51:18,400 916 | char c, *line, *end, tok2, **tok, **ptr; 2023-09-25T16:51:18,401 | ^~~~ 2023-09-25T16:51:18,624 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2023-09-25T16:51:18,842 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2023-09-25T16:51:18,843 src/ViennaRNA/io/file_formats_msa.c:652:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:18,843 652 | for (i = 0; i < strlen(tmp_seq); i++) 2023-09-25T16:51:18,844 | ^ 2023-09-25T16:51:18,848 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2023-09-25T16:51:18,849 src/ViennaRNA/io/file_formats_msa.c:901:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:18,850 901 | for (i = 0; i < strlen(seq); i++) 2023-09-25T16:51:18,851 | ^ 2023-09-25T16:51:19,725 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2023-09-25T16:51:20,083 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2023-09-25T16:51:20,897 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2023-09-25T16:51:21,202 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2023-09-25T16:51:21,373 In file included from src/ViennaRNA/pair_mat.h:5, 2023-09-25T16:51:21,374 from src/ViennaRNA/landscape/neighbor.c:6: 2023-09-25T16:51:21,374 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2023-09-25T16:51:21,375 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:21,376 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:21,376 | ^ 2023-09-25T16:51:21,377 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:21,377 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T16:51:21,378 | ^~~~ 2023-09-25T16:51:21,378 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:51:21,379 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:21,379 | ^~~ 2023-09-25T16:51:21,380 src/ViennaRNA/landscape/neighbor.c:362:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:21,380 362 | int length = MIN2(vc->length + 1, end); 2023-09-25T16:51:21,381 | ^~~~ 2023-09-25T16:51:21,382 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2023-09-25T16:51:21,382 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:21,383 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:21,384 | ^ 2023-09-25T16:51:21,385 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:21,385 490 | int length = MIN2(vc->length, end); 2023-09-25T16:51:21,386 | ^~~~ 2023-09-25T16:51:21,387 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:51:21,387 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:21,388 | ^~~ 2023-09-25T16:51:21,389 src/ViennaRNA/landscape/neighbor.c:490:17: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:21,390 490 | int length = MIN2(vc->length, end); 2023-09-25T16:51:21,390 | ^~~~ 2023-09-25T16:51:21,398 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2023-09-25T16:51:21,400 src/ViennaRNA/landscape/neighbor.c:1709:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:21,400 1709 | while (j <= length && pt[j] > j) // '(' 2023-09-25T16:51:21,401 | ^~ 2023-09-25T16:51:21,401 src/ViennaRNA/landscape/neighbor.c:1711:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:51:21,402 1711 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2023-09-25T16:51:21,403 | ^ 2023-09-25T16:51:21,404 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2023-09-25T16:51:21,404 src/ViennaRNA/landscape/neighbor.c:1739:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:21,405 1739 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:51:21,405 | ^~ 2023-09-25T16:51:21,406 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2023-09-25T16:51:21,407 src/ViennaRNA/landscape/neighbor.c:1824:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:21,408 1824 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:51:21,408 | ^~ 2023-09-25T16:51:21,410 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2023-09-25T16:51:21,411 src/ViennaRNA/landscape/neighbor.c:1905:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:21,412 1905 | for (i = 1; i <= vc->length; i++) 2023-09-25T16:51:21,412 | ^~ 2023-09-25T16:51:21,414 src/ViennaRNA/landscape/neighbor.c:1917:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:21,414 1917 | if (j < vc->length) { 2023-09-25T16:51:21,415 | ^ 2023-09-25T16:51:21,416 src/ViennaRNA/landscape/neighbor.c:1919:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:21,417 1919 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2023-09-25T16:51:21,418 | ^ 2023-09-25T16:51:24,967 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2023-09-25T16:51:25,136 src/ViennaRNA/landscape/walk.c:140:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2023-09-25T16:51:25,137 140 | isShift(vrna_move_t *m) 2023-09-25T16:51:25,137 | ^~~~~~~ 2023-09-25T16:51:25,138 In file included from src/ViennaRNA/landscape/walk.c:24: 2023-09-25T16:51:25,139 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T16:51:25,140 70 | free_incremental_movelist(struct movelist *m) 2023-09-25T16:51:25,140 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:25,141 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2023-09-25T16:51:25,142 52 | init_incremental_movelist(unsigned int n) 2023-09-25T16:51:25,142 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:25,143 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2023-09-25T16:51:25,144 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2023-09-25T16:51:25,144 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:51:25,559 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external.o -fopenmp 2023-09-25T16:51:25,829 In file included from src/ViennaRNA/loops/external.c:36: 2023-09-25T16:51:25,829 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:51:25,830 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,830 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,831 | ^ 2023-09-25T16:51:25,831 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:51:25,832 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,832 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,833 | ^ 2023-09-25T16:51:25,833 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:51:25,834 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,834 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,835 | ^ 2023-09-25T16:51:25,835 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:51:25,836 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,836 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,837 | ^ 2023-09-25T16:51:25,837 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:51:25,838 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,839 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,840 | ^ 2023-09-25T16:51:25,840 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:51:25,841 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,842 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,842 | ^ 2023-09-25T16:51:25,843 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:51:25,844 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,844 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,845 | ^ 2023-09-25T16:51:25,846 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:51:25,846 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,847 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,847 | ^ 2023-09-25T16:51:25,848 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:51:25,848 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,849 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,850 | ^ 2023-09-25T16:51:25,850 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:51:25,851 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,852 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,852 | ^ 2023-09-25T16:51:25,853 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:51:25,854 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,854 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,855 | ^ 2023-09-25T16:51:25,855 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:51:25,856 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,856 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,857 | ^ 2023-09-25T16:51:25,857 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:51:25,858 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,858 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,858 | ^ 2023-09-25T16:51:25,859 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:51:25,860 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,860 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:25,861 | ^ 2023-09-25T16:51:25,861 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:51:25,862 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,863 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,863 | ^ 2023-09-25T16:51:25,864 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:51:25,865 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,866 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:25,866 | ^ 2023-09-25T16:51:25,876 In file included from src/ViennaRNA/loops/external.c:14: 2023-09-25T16:51:25,877 src/ViennaRNA/loops/external.c: In function ‘f3_get_stem_contributions_d0’: 2023-09-25T16:51:25,878 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,878 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:25,879 | ^ 2023-09-25T16:51:25,880 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:25,880 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T16:51:25,881 | ^~~~ 2023-09-25T16:51:25,882 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:51:25,883 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:51:25,883 | ^~~ 2023-09-25T16:51:25,884 src/ViennaRNA/loops/external.c:1000:11: note: in expansion of macro ‘MIN2’ 2023-09-25T16:51:25,885 1000 | max_j = MIN2(length - 1, i + maxdist); 2023-09-25T16:51:25,886 | ^~~~ 2023-09-25T16:51:25,887 src/ViennaRNA/loops/external.c:1070:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:25,887 1070 | if (length <= i + maxdist) { 2023-09-25T16:51:25,888 | ^~ 2023-09-25T16:51:31,216 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_bt.o -fopenmp 2023-09-25T16:51:31,748 In file included from src/ViennaRNA/loops/external_bt.c:34: 2023-09-25T16:51:31,749 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:51:31,749 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,750 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,750 | ^ 2023-09-25T16:51:31,751 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:51:31,751 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,752 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,753 | ^ 2023-09-25T16:51:31,753 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:51:31,754 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,755 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,755 | ^ 2023-09-25T16:51:31,756 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:51:31,757 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,758 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,758 | ^ 2023-09-25T16:51:31,759 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:51:31,760 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,761 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,761 | ^ 2023-09-25T16:51:31,762 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:51:31,762 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,763 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,764 | ^ 2023-09-25T16:51:31,764 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:51:31,765 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,766 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,766 | ^ 2023-09-25T16:51:31,767 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:51:31,768 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,769 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,769 | ^ 2023-09-25T16:51:31,770 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:51:31,770 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,771 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,771 | ^ 2023-09-25T16:51:31,772 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:51:31,772 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,773 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,773 | ^ 2023-09-25T16:51:31,774 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:51:31,774 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,775 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,775 | ^ 2023-09-25T16:51:31,776 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:51:31,776 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,777 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,778 | ^ 2023-09-25T16:51:31,778 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:51:31,779 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,780 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,780 | ^ 2023-09-25T16:51:31,781 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:51:31,782 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,782 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:31,783 | ^ 2023-09-25T16:51:31,784 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:51:31,784 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,785 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,786 | ^ 2023-09-25T16:51:31,786 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:51:31,787 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:31,788 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:31,788 | ^ 2023-09-25T16:51:34,266 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/external_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/external_pf.o -fopenmp 2023-09-25T16:51:34,527 In file included from src/ViennaRNA/loops/external_pf.c:32: 2023-09-25T16:51:34,528 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_comparative’: 2023-09-25T16:51:34,529 src/ViennaRNA/loops/external_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,530 224 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:34,530 | ^ 2023-09-25T16:51:34,531 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_ext_comparative’: 2023-09-25T16:51:34,531 src/ViennaRNA/loops/external_sc_pf.inc:265:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,532 265 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:34,532 | ^ 2023-09-25T16:51:34,533 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_red_user_to_stem_comparative’: 2023-09-25T16:51:34,533 src/ViennaRNA/loops/external_sc_pf.inc:320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,534 320 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:34,534 | ^ 2023-09-25T16:51:34,535 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_comparative’: 2023-09-25T16:51:34,535 src/ViennaRNA/loops/external_sc_pf.inc:385:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,536 385 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:34,536 | ^ 2023-09-25T16:51:34,537 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_up_user_comparative’: 2023-09-25T16:51:34,538 src/ViennaRNA/loops/external_sc_pf.inc:414:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,539 414 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:34,539 | ^ 2023-09-25T16:51:34,540 src/ViennaRNA/loops/external_sc_pf.inc: In function ‘sc_ext_exp_cb_split_user_comparative’: 2023-09-25T16:51:34,541 src/ViennaRNA/loops/external_sc_pf.inc:463:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,541 463 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:34,542 | ^ 2023-09-25T16:51:34,543 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast_init’: 2023-09-25T16:51:34,543 src/ViennaRNA/loops/external_pf.c:160:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,544 160 | for (u = 0; u < domains_up->uniq_motif_count; u++) 2023-09-25T16:51:34,545 | ^ 2023-09-25T16:51:34,545 src/ViennaRNA/loops/external_pf.c:161:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:34,546 161 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:51:34,546 | ^ 2023-09-25T16:51:34,547 src/ViennaRNA/loops/external_pf.c:167:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:34,548 167 | for (u = 0; u <= ud_max_size; u++) 2023-09-25T16:51:34,549 | ^~ 2023-09-25T16:51:34,549 src/ViennaRNA/loops/external_pf.c: In function ‘vrna_exp_E_ext_fast’: 2023-09-25T16:51:34,551 src/ViennaRNA/loops/external_pf.c:270:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:34,552 270 | } else if (j > fc->length) { 2023-09-25T16:51:34,553 | ^ 2023-09-25T16:51:34,553 src/ViennaRNA/loops/external_pf.c: In function ‘reduce_ext_stem_fast’: 2023-09-25T16:51:34,554 src/ViennaRNA/loops/external_pf.c:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:34,554 412 | s3 = (((j < n) || circular) && (sn[j + 1] == sn[j])) ? S1[j + 1] : -1; 2023-09-25T16:51:34,555 | ^ 2023-09-25T16:51:35,983 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin.o -fopenmp 2023-09-25T16:51:37,468 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_bt.o -fopenmp 2023-09-25T16:51:37,802 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/hairpin_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/hairpin_pf.o -fopenmp 2023-09-25T16:51:39,326 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal.o -fopenmp 2023-09-25T16:51:39,600 In file included from src/ViennaRNA/loops/internal.c:29: 2023-09-25T16:51:39,601 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:51:39,602 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,603 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,603 | ^ 2023-09-25T16:51:39,604 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:51:39,605 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,605 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,606 | ^ 2023-09-25T16:51:39,607 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:51:39,607 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,608 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,609 | ^ 2023-09-25T16:51:39,609 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:51:39,610 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,611 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,612 | ^ 2023-09-25T16:51:39,612 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:51:39,612 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,613 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,613 | ^ 2023-09-25T16:51:39,614 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:51:39,614 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,615 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,615 | ^ 2023-09-25T16:51:39,616 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:51:39,616 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:39,617 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:51:39,618 | ^~ 2023-09-25T16:51:39,618 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:51:39,619 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,619 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,620 | ^ 2023-09-25T16:51:39,620 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:51:39,621 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:39,622 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:39,623 | ^ 2023-09-25T16:51:44,458 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_bt.o -fopenmp 2023-09-25T16:51:44,732 In file included from src/ViennaRNA/loops/internal_bt.c:29: 2023-09-25T16:51:44,733 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:51:44,733 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,734 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,735 | ^ 2023-09-25T16:51:44,735 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:51:44,736 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,737 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,738 | ^ 2023-09-25T16:51:44,739 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:51:44,740 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,741 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,742 | ^ 2023-09-25T16:51:44,743 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:51:44,744 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,745 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,746 | ^ 2023-09-25T16:51:44,747 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:51:44,748 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,749 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,750 | ^ 2023-09-25T16:51:44,752 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:51:44,752 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,753 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,753 | ^ 2023-09-25T16:51:44,754 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:51:44,754 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:44,755 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:51:44,755 | ^~ 2023-09-25T16:51:44,756 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:51:44,756 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,757 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,757 | ^ 2023-09-25T16:51:44,758 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:51:44,758 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:44,759 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:44,760 | ^ 2023-09-25T16:51:48,524 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/internal_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/internal_pf.o -fopenmp 2023-09-25T16:51:48,791 In file included from src/ViennaRNA/loops/internal_pf.c:29: 2023-09-25T16:51:48,792 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_up_comparative’: 2023-09-25T16:51:48,792 src/ViennaRNA/loops/internal_sc_pf.inc:73:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,793 73 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,794 | ^ 2023-09-25T16:51:48,794 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_comparative’: 2023-09-25T16:51:48,795 src/ViennaRNA/loops/internal_sc_pf.inc:112:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,796 112 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,797 | ^ 2023-09-25T16:51:48,797 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_bp_local_comparative’: 2023-09-25T16:51:48,798 src/ViennaRNA/loops/internal_sc_pf.inc:143:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,798 143 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,799 | ^ 2023-09-25T16:51:48,799 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_stack_comparative’: 2023-09-25T16:51:48,800 src/ViennaRNA/loops/internal_sc_pf.inc:185:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,800 185 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,801 | ^ 2023-09-25T16:51:48,802 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_user_comparative’: 2023-09-25T16:51:48,803 src/ViennaRNA/loops/internal_sc_pf.inc:224:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,803 224 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,804 | ^ 2023-09-25T16:51:48,810 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_up_comparative’: 2023-09-25T16:51:48,811 src/ViennaRNA/loops/internal_sc_pf.inc:730:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,811 730 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,812 | ^ 2023-09-25T16:51:48,813 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack’: 2023-09-25T16:51:48,814 src/ViennaRNA/loops/internal_sc_pf.inc:761:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:48,815 761 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:51:48,815 | ^~ 2023-09-25T16:51:48,816 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_stack_comparative’: 2023-09-25T16:51:48,817 src/ViennaRNA/loops/internal_sc_pf.inc:784:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,818 784 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,818 | ^ 2023-09-25T16:51:48,819 src/ViennaRNA/loops/internal_sc_pf.inc: In function ‘sc_int_exp_cb_ext_user_comparative’: 2023-09-25T16:51:48,820 src/ViennaRNA/loops/internal_sc_pf.inc:825:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:48,820 825 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:48,821 | ^ 2023-09-25T16:51:48,831 src/ViennaRNA/loops/internal_pf.c: In function ‘exp_E_int_loop’: 2023-09-25T16:51:48,832 src/ViennaRNA/loops/internal_pf.c:250:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:48,832 250 | if (last_k > se[sn[i]]) 2023-09-25T16:51:48,833 | ^ 2023-09-25T16:51:48,834 src/ViennaRNA/loops/internal_pf.c:331:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:48,834 331 | if (first_l < ss[sn[j]]) 2023-09-25T16:51:48,835 | ^ 2023-09-25T16:51:48,837 src/ViennaRNA/loops/internal_pf.c:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:48,837 415 | if (last_k > se[sn[i]]) 2023-09-25T16:51:48,838 | ^ 2023-09-25T16:51:48,839 src/ViennaRNA/loops/internal_pf.c:426:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:51:48,840 426 | if (first_l < ss[sn[j]]) 2023-09-25T16:51:48,840 | ^ 2023-09-25T16:51:53,135 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch.o -fopenmp 2023-09-25T16:51:53,397 In file included from src/ViennaRNA/loops/multibranch.c:36: 2023-09-25T16:51:53,398 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:51:53,398 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,399 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,399 | ^ 2023-09-25T16:51:53,400 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:51:53,400 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,401 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,401 | ^ 2023-09-25T16:51:53,402 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:51:53,403 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,403 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,404 | ^ 2023-09-25T16:51:53,405 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:51:53,405 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,406 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,406 | ^ 2023-09-25T16:51:53,407 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:51:53,408 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,409 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,409 | ^ 2023-09-25T16:51:53,410 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:51:53,410 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,411 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,412 | ^ 2023-09-25T16:51:53,412 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:51:53,413 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,413 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,414 | ^ 2023-09-25T16:51:53,415 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:51:53,415 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,416 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,417 | ^ 2023-09-25T16:51:53,417 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:51:53,418 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,418 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,419 | ^ 2023-09-25T16:51:53,419 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:51:53,420 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,420 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:53,421 | ^ 2023-09-25T16:51:53,421 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:51:53,422 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,422 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,423 | ^ 2023-09-25T16:51:53,423 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:51:53,424 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,424 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,425 | ^ 2023-09-25T16:51:53,425 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:51:53,426 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,427 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,427 | ^ 2023-09-25T16:51:53,428 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:51:53,429 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,429 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,430 | ^ 2023-09-25T16:51:53,431 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:51:53,431 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:53,432 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:53,433 | ^ 2023-09-25T16:51:58,154 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_bt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_bt.o -fopenmp 2023-09-25T16:51:58,414 In file included from src/ViennaRNA/loops/multibranch_bt.c:30: 2023-09-25T16:51:58,414 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:51:58,415 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,416 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,416 | ^ 2023-09-25T16:51:58,417 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:51:58,417 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,418 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,418 | ^ 2023-09-25T16:51:58,419 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:51:58,419 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,420 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,420 | ^ 2023-09-25T16:51:58,421 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:51:58,421 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,422 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,422 | ^ 2023-09-25T16:51:58,423 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:51:58,423 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,424 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,424 | ^ 2023-09-25T16:51:58,425 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:51:58,425 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,426 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,426 | ^ 2023-09-25T16:51:58,427 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:51:58,428 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,428 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,429 | ^ 2023-09-25T16:51:58,429 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:51:58,430 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,431 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,431 | ^ 2023-09-25T16:51:58,432 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:51:58,432 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,433 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,434 | ^ 2023-09-25T16:51:58,434 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:51:58,435 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,435 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:51:58,436 | ^ 2023-09-25T16:51:58,437 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:51:58,437 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,438 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,438 | ^ 2023-09-25T16:51:58,439 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:51:58,439 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,440 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,440 | ^ 2023-09-25T16:51:58,440 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:51:58,441 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,441 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,442 | ^ 2023-09-25T16:51:58,443 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:51:58,443 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,443 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,444 | ^ 2023-09-25T16:51:58,444 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:51:58,445 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:51:58,446 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:51:58,446 | ^ 2023-09-25T16:52:02,872 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/loops/multibranch_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/loops/multibranch_pf.o -fopenmp 2023-09-25T16:52:03,142 src/ViennaRNA/loops/multibranch_pf.c: In function ‘vrna_exp_E_ml_fast_init’: 2023-09-25T16:52:03,143 src/ViennaRNA/loops/multibranch_pf.c:125:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:03,143 125 | if (ud_max_size < domains_up->uniq_motif_size[u]) 2023-09-25T16:52:03,144 | ^ 2023-09-25T16:52:03,148 In file included from src/ViennaRNA/loops/multibranch_pf.c:11: 2023-09-25T16:52:03,148 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_mb_loop_fast’: 2023-09-25T16:52:03,149 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:03,150 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:52:03,150 | ^ 2023-09-25T16:52:03,151 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T16:52:03,151 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T16:52:03,152 | ^~~~ 2023-09-25T16:52:03,153 src/ViennaRNA/utils/basic.h:106:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:52:03,154 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:52:03,154 | ^~~ 2023-09-25T16:52:03,155 src/ViennaRNA/loops/multibranch_pf.c:351:20: note: in expansion of macro ‘MIN2’ 2023-09-25T16:52:03,156 351 | int stop = MIN2(j - 1, se[sn[k - 1]]); 2023-09-25T16:52:03,157 | ^~~~ 2023-09-25T16:52:03,157 src/ViennaRNA/loops/multibranch_pf.c: In function ‘exp_E_ml_fast’: 2023-09-25T16:52:03,158 src/ViennaRNA/utils/basic.h:111:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:03,158 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:52:03,159 | ^ 2023-09-25T16:52:03,159 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T16:52:03,160 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T16:52:03,160 | ^~~~ 2023-09-25T16:52:03,162 src/ViennaRNA/utils/basic.h:111:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:52:03,163 111 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2023-09-25T16:52:03,163 | ^~~ 2023-09-25T16:52:03,164 src/ViennaRNA/loops/multibranch_pf.c:566:18: note: in expansion of macro ‘MAX2’ 2023-09-25T16:52:03,164 566 | int stop = MAX2(i, ss[sn[k]]); 2023-09-25T16:52:03,165 | ^~~~ 2023-09-25T16:52:03,165 src/ViennaRNA/loops/multibranch_pf.c:587:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:03,166 587 | if (maxk > se[sn[i]]) 2023-09-25T16:52:03,166 | ^ 2023-09-25T16:52:05,088 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe.o -fopenmp 2023-09-25T16:52:05,374 In file included from src/ViennaRNA/mfe.c:58: 2023-09-25T16:52:05,374 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:52:05,375 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,376 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,376 | ^ 2023-09-25T16:52:05,377 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:52:05,378 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,378 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,379 | ^ 2023-09-25T16:52:05,380 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:52:05,380 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,381 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,382 | ^ 2023-09-25T16:52:05,382 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:52:05,383 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,384 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,384 | ^ 2023-09-25T16:52:05,385 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:52:05,386 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,387 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,387 | ^ 2023-09-25T16:52:05,388 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:52:05,388 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,389 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,389 | ^ 2023-09-25T16:52:05,390 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:52:05,390 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,391 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,391 | ^ 2023-09-25T16:52:05,392 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:52:05,393 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,393 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,394 | ^ 2023-09-25T16:52:05,394 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:52:05,395 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,395 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,396 | ^ 2023-09-25T16:52:05,397 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:52:05,398 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,398 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,399 | ^ 2023-09-25T16:52:05,400 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:52:05,400 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,401 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,402 | ^ 2023-09-25T16:52:05,402 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:52:05,403 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,403 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,404 | ^ 2023-09-25T16:52:05,405 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:52:05,405 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,406 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,407 | ^ 2023-09-25T16:52:05,407 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:52:05,408 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,409 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:52:05,410 | ^ 2023-09-25T16:52:05,410 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:52:05,411 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,412 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,412 | ^ 2023-09-25T16:52:05,413 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:52:05,413 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,414 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:52:05,414 | ^ 2023-09-25T16:52:05,415 src/ViennaRNA/mfe.c: In function ‘fill_arrays’: 2023-09-25T16:52:05,416 src/ViennaRNA/mfe.c:389:52: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:52:05,416 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T16:52:05,417 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:52:05,417 src/ViennaRNA/mfe.c:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,418 389 | if (length <= ((fc->strands > 1) ? fc->strands : md->min_loop_size)) { 2023-09-25T16:52:05,418 | ^~ 2023-09-25T16:52:05,419 src/ViennaRNA/mfe.c: In function ‘postprocess_circular’: 2023-09-25T16:52:05,419 src/ViennaRNA/mfe.c:510:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,420 510 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:52:05,421 | ^ 2023-09-25T16:52:05,476 src/ViennaRNA/mfe.c: In function ‘pair_multi_strand’: 2023-09-25T16:52:05,478 src/ViennaRNA/mfe.c:2197:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,479 2197 | if (ends[sn[i]] > i) 2023-09-25T16:52:05,479 | ^ 2023-09-25T16:52:05,481 src/ViennaRNA/mfe.c:2200:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,481 2200 | if (j - 1 > ends[sn[i]]) 2023-09-25T16:52:05,482 | ^ 2023-09-25T16:52:05,484 src/ViennaRNA/mfe.c:2220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,484 2220 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T16:52:05,485 | ^~ 2023-09-25T16:52:05,486 src/ViennaRNA/mfe.c:2223:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,487 2223 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T16:52:05,487 | ^~ 2023-09-25T16:52:05,493 src/ViennaRNA/mfe.c:2292:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,494 2292 | if (nick > i + 2) 2023-09-25T16:52:05,494 | ^ 2023-09-25T16:52:05,496 src/ViennaRNA/mfe.c:2295:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,496 2295 | if (j > nick + 1) 2023-09-25T16:52:05,497 | ^ 2023-09-25T16:52:05,500 src/ViennaRNA/mfe.c:2325:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,500 2325 | if (nick > i + 2) 2023-09-25T16:52:05,500 | ^ 2023-09-25T16:52:05,502 src/ViennaRNA/mfe.c:2328:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,503 2328 | if (j > nick) 2023-09-25T16:52:05,503 | ^ 2023-09-25T16:52:05,506 src/ViennaRNA/mfe.c:2358:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,506 2358 | if (nick > i + 1) 2023-09-25T16:52:05,507 | ^ 2023-09-25T16:52:05,508 src/ViennaRNA/mfe.c:2361:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,509 2361 | if (j > nick + 1) 2023-09-25T16:52:05,509 | ^ 2023-09-25T16:52:05,511 src/ViennaRNA/mfe.c:2129:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:05,512 2129 | sc_ext_red_cb sc_red_ext; 2023-09-25T16:52:05,512 | ^~~~~~~~~~ 2023-09-25T16:52:05,513 src/ViennaRNA/mfe.c:2127:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:05,514 2127 | sc_ext_red_cb sc_spl; 2023-09-25T16:52:05,514 | ^~~~~~ 2023-09-25T16:52:05,516 src/ViennaRNA/mfe.c: In function ‘BT_multi_strand’: 2023-09-25T16:52:05,518 src/ViennaRNA/mfe.c:2477:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,519 2477 | if (ends[sn[*i]] > *i) 2023-09-25T16:52:05,520 | ^ 2023-09-25T16:52:05,521 src/ViennaRNA/mfe.c:2480:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,522 2480 | if (*j - 1 > ends[sn[*i]]) 2023-09-25T16:52:05,523 | ^ 2023-09-25T16:52:05,524 src/ViennaRNA/mfe.c:2486:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,525 2486 | *i = (ends[sn[*i]] > *i) ? *i + 1 : 0; 2023-09-25T16:52:05,526 | ^ 2023-09-25T16:52:05,527 src/ViennaRNA/mfe.c:2487:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,527 2487 | *j = (*j - 1 > ends[sn[*i]]) ? *j - 1 : 0; 2023-09-25T16:52:05,528 | ^ 2023-09-25T16:52:05,529 src/ViennaRNA/mfe.c:2495:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,530 2495 | if (*i + 1 <= ends[sn[nick]]) 2023-09-25T16:52:05,530 | ^~ 2023-09-25T16:52:05,532 src/ViennaRNA/mfe.c:2498:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,533 2498 | if (ends[sn[nick]] + 1 <= *j - 1) 2023-09-25T16:52:05,533 | ^~ 2023-09-25T16:52:05,535 src/ViennaRNA/mfe.c:2504:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,536 2504 | *i = (*i + 1 <= ends[sn[nick]]) ? *i + 1 : 0; 2023-09-25T16:52:05,536 | ^~ 2023-09-25T16:52:05,537 src/ViennaRNA/mfe.c:2505:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,538 2505 | *j = (ends[sn[nick]] + 1 <= *j - 1) ? *j - 1 : 0; 2023-09-25T16:52:05,539 | ^~ 2023-09-25T16:52:05,544 src/ViennaRNA/mfe.c:2590:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,545 2590 | if (nick > *i + 2) 2023-09-25T16:52:05,545 | ^ 2023-09-25T16:52:05,547 src/ViennaRNA/mfe.c:2593:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,547 2593 | if (*j > nick + 1) 2023-09-25T16:52:05,548 | ^ 2023-09-25T16:52:05,550 src/ViennaRNA/mfe.c:2599:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,550 2599 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T16:52:05,551 | ^ 2023-09-25T16:52:05,552 src/ViennaRNA/mfe.c:2600:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,553 2600 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T16:52:05,553 | ^ 2023-09-25T16:52:05,556 src/ViennaRNA/mfe.c:2623:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,556 2623 | if (nick > *i + 2) 2023-09-25T16:52:05,557 | ^ 2023-09-25T16:52:05,559 src/ViennaRNA/mfe.c:2626:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,559 2626 | if (*j > nick) 2023-09-25T16:52:05,560 | ^ 2023-09-25T16:52:05,562 src/ViennaRNA/mfe.c:2632:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,563 2632 | *i = (nick > *i + 2) ? *i + 2 : 0; 2023-09-25T16:52:05,563 | ^ 2023-09-25T16:52:05,564 src/ViennaRNA/mfe.c:2633:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,565 2633 | *j = (*j > nick) ? *j - 1 : 0; 2023-09-25T16:52:05,566 | ^ 2023-09-25T16:52:05,568 src/ViennaRNA/mfe.c:2656:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,568 2656 | if (nick > *i + 1) 2023-09-25T16:52:05,569 | ^ 2023-09-25T16:52:05,571 src/ViennaRNA/mfe.c:2659:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,571 2659 | if (*j > nick + 1) 2023-09-25T16:52:05,572 | ^ 2023-09-25T16:52:05,574 src/ViennaRNA/mfe.c:2665:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:05,574 2665 | *i = (nick > *i + 1) ? *i + 1 : 0; 2023-09-25T16:52:05,575 | ^ 2023-09-25T16:52:05,576 src/ViennaRNA/mfe.c:2666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,577 2666 | *j = (*j > nick + 1) ? *j - 2 : 0; 2023-09-25T16:52:05,578 | ^ 2023-09-25T16:52:05,579 src/ViennaRNA/mfe.c:2403:29: warning: variable ‘sc_red_ext’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:05,579 2403 | sc_ext_red_cb sc_red_ext; 2023-09-25T16:52:05,580 | ^~~~~~~~~~ 2023-09-25T16:52:05,581 src/ViennaRNA/mfe.c:2401:29: warning: variable ‘sc_spl’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:05,582 2401 | sc_ext_red_cb sc_spl; 2023-09-25T16:52:05,582 | ^~~~~~ 2023-09-25T16:52:05,607 src/ViennaRNA/mfe.c: In function ‘backtrack’: 2023-09-25T16:52:05,609 src/ViennaRNA/mfe.c:3261:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,610 3261 | if (k < fc->strand_end[strand]) { 2023-09-25T16:52:05,610 | ^ 2023-09-25T16:52:05,613 src/ViennaRNA/mfe.c:3296:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:05,614 3296 | if (k > fc->strand_start[strand]) { 2023-09-25T16:52:05,615 | ^ 2023-09-25T16:52:13,740 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window.o -fopenmp 2023-09-25T16:52:14,032 src/ViennaRNA/mfe_window.c: In function ‘backtrack’: 2023-09-25T16:52:14,033 src/ViennaRNA/mfe_window.c:930:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:14,034 930 | if ((bp_stack[b].i == bp_stack[b].j) && (bp_stack[b].i < length)) 2023-09-25T16:52:14,035 | ^ 2023-09-25T16:52:14,036 src/ViennaRNA/mfe_window.c:1051:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:14,037 1051 | if (max3 < bp_stack[i].j - start) 2023-09-25T16:52:14,038 | ^ 2023-09-25T16:52:14,042 src/ViennaRNA/mfe_window.c: In function ‘update_block’: 2023-09-25T16:52:14,043 src/ViennaRNA/mfe_window.c:1312:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:52:14,044 1312 | for (size_t pos = i_local + 1; pos <= end; pos++) 2023-09-25T16:52:14,045 | ^~ 2023-09-25T16:52:14,046 src/ViennaRNA/mfe_window.c:1313:22: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:14,047 1313 | if (b->pt[pos] > pos) { 2023-09-25T16:52:14,048 | ^ 2023-09-25T16:52:14,049 src/ViennaRNA/mfe_window.c:1348:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:14,050 1348 | if (b->pt[p] > p) { 2023-09-25T16:52:14,052 | ^ 2023-09-25T16:52:14,053 src/ViennaRNA/mfe_window.c: In function ‘insert_block’: 2023-09-25T16:52:14,054 src/ViennaRNA/mfe_window.c:1592:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-25T16:52:14,054 1592 | if (pt[i_local] > i_local) { 2023-09-25T16:52:14,055 | ^ 2023-09-25T16:52:14,055 src/ViennaRNA/mfe_window.c: In function ‘print_block_list’: 2023-09-25T16:52:14,056 src/ViennaRNA/mfe_window.c:1611:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T16:52:14,057 1611 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2023-09-25T16:52:14,058 | ~~^ 2023-09-25T16:52:14,058 | | 2023-09-25T16:52:14,059 | long unsigned int 2023-09-25T16:52:14,060 | %u 2023-09-25T16:52:14,060 1612 | cnt, 2023-09-25T16:52:14,061 | ~~~ 2023-09-25T16:52:14,061 | | 2023-09-25T16:52:14,062 | size_t {aka unsigned int} 2023-09-25T16:52:14,063 src/ViennaRNA/mfe_window.c:1617:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-25T16:52:14,063 1617 | printf("%lu blocks remaining\n", cnt); 2023-09-25T16:52:14,064 | ~~^ ~~~ 2023-09-25T16:52:14,065 | | | 2023-09-25T16:52:14,066 | long unsigned int size_t {aka unsigned int} 2023-09-25T16:52:14,067 | %u 2023-09-25T16:52:14,093 src/ViennaRNA/mfe_window.c: At top level: 2023-09-25T16:52:14,094 src/ViennaRNA/mfe_window.c:1605:1: warning: ‘print_block_list’ defined but not used [-Wunused-function] 2023-09-25T16:52:14,095 1605 | print_block_list(struct block *block_list) 2023-09-25T16:52:14,096 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:52:16,030 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_window_wrappers.o -fopenmp 2023-09-25T16:52:16,267 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe_wrappers.o -fopenmp 2023-09-25T16:52:16,549 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2023-09-25T16:52:16,764 src/ViennaRNA/mm.c: In function ‘maximumMatchingConstraint’: 2023-09-25T16:52:16,765 src/ViennaRNA/mm.c:154:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:16,765 154 | if (ptable[l] != j) 2023-09-25T16:52:16,766 | ^~ 2023-09-25T16:52:16,766 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2023-09-25T16:52:16,767 src/ViennaRNA/mm.c:187:25: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:16,769 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T16:52:16,770 | ^~ 2023-09-25T16:52:16,770 src/ViennaRNA/mm.c:187:44: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:16,771 187 | if (ptable[l] != j && ptable2[l] != j) 2023-09-25T16:52:16,771 | ^~ 2023-09-25T16:52:17,436 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2023-09-25T16:52:18,422 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2023-09-25T16:52:20,530 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2023-09-25T16:52:21,293 In file included from src/ViennaRNA/params/convert.c:27: 2023-09-25T16:52:21,294 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:52:21,295 100 | PRIVATE int oldinternal_loop37_184[31] = { 2023-09-25T16:52:21,296 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:52:21,296 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:52:21,297 90 | PRIVATE int oldbulge37_184[31] = { 2023-09-25T16:52:21,298 | ^~~~~~~~~~~~~~ 2023-09-25T16:52:21,299 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2023-09-25T16:52:21,300 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2023-09-25T16:52:21,300 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:52:21,301 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2023-09-25T16:52:21,302 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2023-09-25T16:52:21,302 | ^~~~~~~~~~~~ 2023-09-25T16:52:22,261 In function ‘write_new_parameter_file’, 2023-09-25T16:52:22,262 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:172:3: 2023-09-25T16:52:22,263 src/ViennaRNA/params/convert.c:1166:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2023-09-25T16:52:22,263 1166 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2023-09-25T16:52:22,264 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:52:22,265 src/ViennaRNA/params/convert.c:1145:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2023-09-25T16:52:22,265 1145 | strncpy(bla, Triloops_184 + c * 6, 5); 2023-09-25T16:52:22,266 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:52:23,662 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2023-09-25T16:52:24,796 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2023-09-25T16:52:34,893 src/ViennaRNA/params/io.c: In function ‘save_parameter_file’: 2023-09-25T16:52:34,894 src/ViennaRNA/params/io.c:1613:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,895 1613 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T16:52:34,895 | ^ 2023-09-25T16:52:34,896 src/ViennaRNA/params/io.c:1617:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,896 1617 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T16:52:34,897 | ^ 2023-09-25T16:52:34,898 src/ViennaRNA/params/io.c:1621:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,898 1621 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T16:52:34,899 | ^ 2023-09-25T16:52:34,911 src/ViennaRNA/params/io.c: In function ‘write_parameter_file’: 2023-09-25T16:52:34,912 src/ViennaRNA/params/io.c:2096:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,913 2096 | for (c = 0; c < strlen(Hexaloops) / 9; c++) 2023-09-25T16:52:34,913 | ^ 2023-09-25T16:52:34,914 src/ViennaRNA/params/io.c:2100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,915 2100 | for (c = 0; c < strlen(Tetraloops) / 7; c++) 2023-09-25T16:52:34,915 | ^ 2023-09-25T16:52:34,917 src/ViennaRNA/params/io.c:2104:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:52:34,917 2104 | for (c = 0; c < strlen(Triloops) / 6; c++) 2023-09-25T16:52:34,919 | ^ 2023-09-25T16:52:34,943 src/ViennaRNA/params/io.c: At top level: 2023-09-25T16:52:34,944 src/ViennaRNA/params/io.c:1003:1: warning: ‘rd_6dim’ defined but not used [-Wunused-function] 2023-09-25T16:52:34,944 1003 | rd_6dim(char **content, 2023-09-25T16:52:34,945 | ^~~~~~~ 2023-09-25T16:52:38,224 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2023-09-25T16:52:38,501 src/ViennaRNA/params/params.c: In function ‘rescale_params’: 2023-09-25T16:52:38,503 src/ViennaRNA/params/params.c:1088:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:38,504 1088 | for (i = 2; i <= vc->length; i++) { 2023-09-25T16:52:38,505 | ^~ 2023-09-25T16:52:41,505 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2023-09-25T16:52:41,706 src/ViennaRNA/params/salt.c: In function ‘vrna_salt_duplex_init’: 2023-09-25T16:52:41,708 src/ViennaRNA/params/salt.c:193:19: warning: unused variable ‘penalty’ [-Wunused-variable] 2023-09-25T16:52:41,709 193 | double a, x, penalty; 2023-09-25T16:52:41,709 | ^~~~~~~ 2023-09-25T16:52:41,710 src/ViennaRNA/params/salt.c:193:13: warning: unused variable ‘a’ [-Wunused-variable] 2023-09-25T16:52:41,710 193 | double a, x, penalty; 2023-09-25T16:52:41,711 | ^ 2023-09-25T16:52:41,901 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func.o -fopenmp 2023-09-25T16:52:42,194 src/ViennaRNA/part_func.c: In function ‘postprocess_circular’: 2023-09-25T16:52:42,195 src/ViennaRNA/part_func.c:770:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:42,195 770 | for (s = 0; s < fc->n_seq; s++) 2023-09-25T16:52:42,196 | ^ 2023-09-25T16:52:43,417 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_co.o -fopenmp 2023-09-25T16:52:43,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_up.o -fopenmp 2023-09-25T16:52:44,203 src/ViennaRNA/part_func_up.c: In function ‘free_pu_contrib_struct’: 2023-09-25T16:52:44,203 src/ViennaRNA/part_func_up.c:222:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:44,204 222 | for (i = 0; i <= pu->length; i++) { 2023-09-25T16:52:44,205 | ^~ 2023-09-25T16:52:44,206 src/ViennaRNA/part_func_up.c: In function ‘pf_unstru’: 2023-09-25T16:52:44,206 src/ViennaRNA/part_func_up.c:270:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:44,207 270 | for (i = 0; i < size; i++) 2023-09-25T16:52:44,208 | ^ 2023-09-25T16:52:47,241 src/ViennaRNA/part_func_up.c: In function ‘pf_interact’: 2023-09-25T16:52:47,242 src/ViennaRNA/part_func_up.c:911:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:47,242 911 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2023-09-25T16:52:47,243 | ^ 2023-09-25T16:52:47,244 src/ViennaRNA/part_func_up.c:594:49: note: ‘p_c2_S’ was declared here 2023-09-25T16:52:47,245 594 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2023-09-25T16:52:47,246 | ^~~~~~ 2023-09-25T16:52:48,315 src/ViennaRNA/part_func_up.c: In function ‘Up_plot’: 2023-09-25T16:52:48,316 src/ViennaRNA/part_func_up.c:1615:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:48,317 1615 | return ret; 2023-09-25T16:52:48,318 | ^~~ 2023-09-25T16:52:48,318 src/ViennaRNA/part_func_up.c:1587:11: note: ‘ret’ was declared here 2023-09-25T16:52:48,319 1587 | int ret; 2023-09-25T16:52:48,319 | ^~~ 2023-09-25T16:52:48,467 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/part_func_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/part_func_wrappers.o -fopenmp 2023-09-25T16:52:48,764 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2023-09-25T16:52:49,465 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_fold.o -fopenmp 2023-09-25T16:52:50,263 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/pf_multifold.o -fopenmp 2023-09-25T16:52:50,391 src/ViennaRNA/pf_multifold.c: In function ‘mf_rule_pair’: 2023-09-25T16:52:50,392 src/ViennaRNA/pf_multifold.c:121:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:52:50,393 121 | if (i + 1 <= ends[sn[nick]]) 2023-09-25T16:52:50,394 | ^~ 2023-09-25T16:52:50,395 src/ViennaRNA/pf_multifold.c:124:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:52:50,396 124 | if (ends[sn[nick]] + 1 <= j - 1) 2023-09-25T16:52:50,396 | ^~ 2023-09-25T16:52:50,726 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2023-09-25T16:52:50,966 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2023-09-25T16:52:50,967 src/ViennaRNA/plex.c:431:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:50,968 431 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2023-09-25T16:52:50,969 | ^~~~~~~ 2023-09-25T16:52:50,986 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:52:50,986 src/ViennaRNA/plex.c:759:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2023-09-25T16:52:50,987 759 | int jdiff = j_pos + j - 11; 2023-09-25T16:52:50,988 | ^~~~~ 2023-09-25T16:52:50,989 src/ViennaRNA/plex.c:1010:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:50,990 1010 | int endy; 2023-09-25T16:52:50,991 | ^~~~ 2023-09-25T16:52:50,992 src/ViennaRNA/plex.c:1008:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:50,992 1008 | int endx; 2023-09-25T16:52:50,993 | ^~~~ 2023-09-25T16:52:50,993 src/ViennaRNA/plex.c:624:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:50,994 624 | int maxPenalty[4]; 2023-09-25T16:52:50,994 | ^~~~~~~~~~ 2023-09-25T16:52:51,016 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2023-09-25T16:52:51,016 src/ViennaRNA/plex.c:1107:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:51,017 1107 | int maxPenalty[4]; 2023-09-25T16:52:51,018 | ^~~~~~~~~~ 2023-09-25T16:52:51,035 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T16:52:51,037 src/ViennaRNA/plex.c:1938:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:51,037 1938 | int maxPenalty[4]; 2023-09-25T16:52:51,038 | ^~~~~~~~~~ 2023-09-25T16:52:51,053 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2023-09-25T16:52:51,056 src/ViennaRNA/plex.c:2663:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:51,056 2663 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:52:51,057 | ^~ 2023-09-25T16:52:51,078 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T16:52:51,081 src/ViennaRNA/plex.c:2851:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:52:51,081 2851 | int i, j, Emin, i_min, j_min, l1; 2023-09-25T16:52:51,082 | ^~ 2023-09-25T16:52:52,837 src/ViennaRNA/plex.c:3177:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:52,838 3177 | j0 = MAX2(j - 1, 11); 2023-09-25T16:52:52,838 | ^ 2023-09-25T16:52:52,839 src/ViennaRNA/plex.c:2862:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:52:52,840 2862 | int max_pos_j; 2023-09-25T16:52:52,841 | ^~~~~~~~~ 2023-09-25T16:52:52,841 In function ‘fbacktrack’, 2023-09-25T16:52:52,842 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3115:11: 2023-09-25T16:52:52,843 src/ViennaRNA/plex.c:3189:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:52,843 3189 | type = pair[S1[i]][S2[j]]; 2023-09-25T16:52:52,844 | ^ 2023-09-25T16:52:52,845 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2023-09-25T16:52:52,845 src/ViennaRNA/plex.c:2861:13: note: ‘max_pos’ was declared here 2023-09-25T16:52:52,846 2861 | int max_pos; /* get position of the best hit */ 2023-09-25T16:52:52,847 | ^~~~~~~ 2023-09-25T16:52:55,744 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:52:55,745 src/ViennaRNA/plex.c:1023:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:55,745 1023 | if (j_min > 11) 2023-09-25T16:52:55,746 | ^ 2023-09-25T16:52:55,746 src/ViennaRNA/plex.c:619:13: note: ‘max_pos_j’ was declared here 2023-09-25T16:52:55,747 619 | int max_pos_j; 2023-09-25T16:52:55,748 | ^~~~~~~~~ 2023-09-25T16:52:55,749 In function ‘fbacktrack_XS’, 2023-09-25T16:52:55,750 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:988:11: 2023-09-25T16:52:55,750 src/ViennaRNA/plex.c:1126:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:55,751 1126 | type = pair[S1[i]][S2[j]]; 2023-09-25T16:52:55,752 | ^ 2023-09-25T16:52:55,753 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2023-09-25T16:52:55,754 src/ViennaRNA/plex.c:618:13: note: ‘max_pos’ was declared here 2023-09-25T16:52:55,755 618 | int max_pos; /* get position of the best hit */ 2023-09-25T16:52:55,755 | ^~~~~~~ 2023-09-25T16:52:57,821 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2023-09-25T16:52:57,822 src/ViennaRNA/plex.c:2317:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:57,823 2317 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:52:57,823 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:52:57,824 src/ViennaRNA/plex.c:1934:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:52:57,824 1934 | int min_j_colonne; 2023-09-25T16:52:57,825 | ^~~~~~~~~~~~~ 2023-09-25T16:52:58,994 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2023-09-25T16:52:58,995 src/ViennaRNA/plex.c:4087:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:52:58,996 4087 | position_j[i + delta] = min_j_colonne; 2023-09-25T16:52:58,996 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:52:58,996 src/ViennaRNA/plex.c:3786:13: note: ‘min_j_colonne’ was declared here 2023-09-25T16:52:58,997 3786 | int min_j_colonne; 2023-09-25T16:52:58,997 | ^~~~~~~~~~~~~ 2023-09-25T16:53:00,005 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2023-09-25T16:53:00,249 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2023-09-25T16:53:00,250 src/ViennaRNA/plex_functions.c:250:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,251 250 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2023-09-25T16:53:00,251 | ^~ 2023-09-25T16:53:00,252 src/ViennaRNA/plex_functions.c:252:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,253 252 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2023-09-25T16:53:00,254 | ^~ 2023-09-25T16:53:00,254 src/ViennaRNA/plex_functions.c:284:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,255 284 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2023-09-25T16:53:00,256 | ^ 2023-09-25T16:53:00,256 src/ViennaRNA/plex_functions.c:288:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,257 288 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2023-09-25T16:53:00,258 | ^ 2023-09-25T16:53:00,261 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2023-09-25T16:53:00,262 src/ViennaRNA/plex_functions.c:563:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:00,263 563 | if (n > turn + 1) { 2023-09-25T16:53:00,263 | ^ 2023-09-25T16:53:00,264 src/ViennaRNA/plex_functions.c:575:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,265 575 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T16:53:00,266 | ^~ 2023-09-25T16:53:00,266 src/ViennaRNA/plex_functions.c:591:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,267 591 | for (l = i + turn + 1; l <= n; l++) { 2023-09-25T16:53:00,267 | ^~ 2023-09-25T16:53:00,269 src/ViennaRNA/plex_functions.c:632:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,270 632 | for (j = i + turn + 1; j <= n; j++) { 2023-09-25T16:53:00,270 | ^~ 2023-09-25T16:53:00,271 In file included from src/ViennaRNA/plex_functions.c:25: 2023-09-25T16:53:00,271 src/ViennaRNA/utils/basic.h:106:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:00,272 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:53:00,272 | ^ 2023-09-25T16:53:00,273 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:53:00,273 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T16:53:00,274 | ^~~~ 2023-09-25T16:53:00,274 src/ViennaRNA/utils/basic.h:106:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:53:00,275 106 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2023-09-25T16:53:00,275 | ^~~ 2023-09-25T16:53:00,276 src/ViennaRNA/plex_functions.c:634:23: note: in expansion of macro ‘MIN2’ 2023-09-25T16:53:00,276 634 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2023-09-25T16:53:00,277 | ^~~~ 2023-09-25T16:53:00,278 src/ViennaRNA/plex_functions.c:640:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:00,278 640 | sl = (l < n) ? S1[l + 1] : -1; 2023-09-25T16:53:00,279 | ^ 2023-09-25T16:53:01,773 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2023-09-25T16:53:01,931 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T16:53:01,932 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2023-09-25T16:53:01,933 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:01,933 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:53:01,934 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:53:01,934 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:01,935 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:53:01,936 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:53:01,936 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:01,937 471 | const double *lineVector, 2023-09-25T16:53:01,938 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:53:01,939 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:01,939 103 | const double lineVector[2], 2023-09-25T16:53:01,940 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:53:01,941 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:01,941 472 | const double *point) 2023-09-25T16:53:01,942 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:53:01,942 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:01,943 104 | const double point[2]); 2023-09-25T16:53:01,943 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:53:01,948 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:53:01,949 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:01,949 846 | double alpha[3]; 2023-09-25T16:53:01,950 | ^~~~~ 2023-09-25T16:53:02,006 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2023-09-25T16:53:02,007 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2023-09-25T16:53:02,008 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,008 285 | char *fnName = "intersectLineArc"; 2023-09-25T16:53:02,009 | ^~~~~~ 2023-09-25T16:53:02,010 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2023-09-25T16:53:02,010 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,011 341 | char *fnName = "intersectArcArc"; 2023-09-25T16:53:02,012 | ^~~~~~ 2023-09-25T16:53:02,017 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2023-09-25T16:53:02,018 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2023-09-25T16:53:02,019 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2023-09-25T16:53:02,019 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2023-09-25T16:53:02,020 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2023-09-25T16:53:02,021 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,021 151 | char *fnName = "CLOSEST ON BULGE"; 2023-09-25T16:53:02,022 | ^~~~~~ 2023-09-25T16:53:02,033 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2023-09-25T16:53:02,034 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,034 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2023-09-25T16:53:02,035 | ^~~~~~ 2023-09-25T16:53:02,036 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2023-09-25T16:53:02,037 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,038 179 | const char *fnName = "intersectNodeNode"; 2023-09-25T16:53:02,038 | ^~~~~~ 2023-09-25T16:53:02,044 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2023-09-25T16:53:02,045 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2023-09-25T16:53:02,046 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2023-09-25T16:53:02,046 109 | double newRadius = cfg->radius; 2023-09-25T16:53:02,046 | ^~~~~~~~~ 2023-09-25T16:53:02,047 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2023-09-25T16:53:02,047 104 | double oldRadius = cfg->radius; 2023-09-25T16:53:02,048 | ^~~~~~~~~ 2023-09-25T16:53:02,048 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2023-09-25T16:53:02,049 100 | char *logTag = intersectionTypeToString(it); 2023-09-25T16:53:02,049 | ^~~~~~ 2023-09-25T16:53:02,050 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,050 61 | char *fnName = "checkAndApplyConfigChanges"; 2023-09-25T16:53:02,051 | ^~~~~~ 2023-09-25T16:53:02,051 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2023-09-25T16:53:02,052 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,053 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2023-09-25T16:53:02,053 | ^~~~~~ 2023-09-25T16:53:02,054 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2023-09-25T16:53:02,055 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,056 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2023-09-25T16:53:02,056 | ^~~~~~ 2023-09-25T16:53:02,063 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2023-09-25T16:53:02,064 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,064 694 | char *fnName = "optimizeNode"; 2023-09-25T16:53:02,065 | ^~~~~~ 2023-09-25T16:53:02,066 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2023-09-25T16:53:02,066 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,067 889 | char *fnName = "optimizeTreeRecursive"; 2023-09-25T16:53:02,068 | ^~~~~~ 2023-09-25T16:53:02,068 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2023-09-25T16:53:02,069 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,069 943 | char *fnName = "optimizeTree"; 2023-09-25T16:53:02,070 | ^~~~~~ 2023-09-25T16:53:02,070 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2023-09-25T16:53:02,071 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2023-09-25T16:53:02,072 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2023-09-25T16:53:02,072 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,073 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2023-09-25T16:53:02,074 | ^~~~~~ 2023-09-25T16:53:02,075 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2023-09-25T16:53:02,075 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,076 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2023-09-25T16:53:02,076 | ^~~~~~ 2023-09-25T16:53:02,077 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2023-09-25T16:53:02,077 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,078 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2023-09-25T16:53:02,078 | ^~~~~~ 2023-09-25T16:53:02,079 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2023-09-25T16:53:02,080 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,080 310 | char *fnName = "CALC DELTAS"; 2023-09-25T16:53:02,081 | ^~~~~~ 2023-09-25T16:53:02,082 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2023-09-25T16:53:02,082 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2023-09-25T16:53:02,083 76 | treeNode *rightNode = getChild(tree, right); 2023-09-25T16:53:02,083 | ^~~~~~~~~ 2023-09-25T16:53:02,084 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2023-09-25T16:53:02,085 75 | treeNode *leftNode = getChild(tree, left); 2023-09-25T16:53:02,085 | ^~~~~~~~ 2023-09-25T16:53:02,086 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2023-09-25T16:53:02,086 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,087 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2023-09-25T16:53:02,087 | ^~~~~~ 2023-09-25T16:53:02,088 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2023-09-25T16:53:02,088 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,089 153 | char *fnName = "CHECK SIBLINGS"; 2023-09-25T16:53:02,090 | ^~~~~~ 2023-09-25T16:53:02,095 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2023-09-25T16:53:02,096 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2023-09-25T16:53:02,097 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2023-09-25T16:53:02,097 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,098 31 | char *fnName = "POINT TO ANGLE"; 2023-09-25T16:53:02,099 | ^~~~~~ 2023-09-25T16:53:02,099 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2023-09-25T16:53:02,100 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2023-09-25T16:53:02,101 169 | double staticRectExt[2] = { 2023-09-25T16:53:02,101 | ^~~~~~~~~~~~~ 2023-09-25T16:53:02,102 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,103 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2023-09-25T16:53:02,104 | ^~~~~~ 2023-09-25T16:53:02,104 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2023-09-25T16:53:02,105 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,105 204 | char *fnName = "fixIntersectionOfCircles"; 2023-09-25T16:53:02,106 | ^~~~~~ 2023-09-25T16:53:02,106 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2023-09-25T16:53:02,106 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,107 310 | char *fnName = "getRotationAngleLxL"; 2023-09-25T16:53:02,107 | ^~~~~~ 2023-09-25T16:53:02,108 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2023-09-25T16:53:02,108 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,109 349 | char *fnName = "getRotationAngleLxS"; 2023-09-25T16:53:02,109 | ^~~~~~ 2023-09-25T16:53:02,110 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2023-09-25T16:53:02,110 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,111 382 | char *fnName = "getRotationAngleSxL"; 2023-09-25T16:53:02,112 | ^~~~~~ 2023-09-25T16:53:02,112 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2023-09-25T16:53:02,113 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,113 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2023-09-25T16:53:02,114 | ^~~~~~~~~ 2023-09-25T16:53:02,115 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,115 413 | char *fnName = "getRotationAngleLxB"; 2023-09-25T16:53:02,116 | ^~~~~~ 2023-09-25T16:53:02,117 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2023-09-25T16:53:02,117 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,118 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2023-09-25T16:53:02,119 | ^~~~~~~~~ 2023-09-25T16:53:02,119 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,120 477 | char *fnName = "getRotationAngleBxL"; 2023-09-25T16:53:02,120 | ^~~~~~ 2023-09-25T16:53:02,121 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2023-09-25T16:53:02,122 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,122 541 | char *fnName = "getRotationAngleSxS"; 2023-09-25T16:53:02,123 | ^~~~~~ 2023-09-25T16:53:02,124 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2023-09-25T16:53:02,124 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,125 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T16:53:02,126 | ^~~~~~~~~ 2023-09-25T16:53:02,127 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,127 560 | char *fnName = "getRotationAngleSxB"; 2023-09-25T16:53:02,128 | ^~~~~~ 2023-09-25T16:53:02,128 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2023-09-25T16:53:02,129 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,129 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2023-09-25T16:53:02,130 | ^~~~~~~~~ 2023-09-25T16:53:02,130 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,131 605 | char *fnName = "getRotationAngleBxS"; 2023-09-25T16:53:02,132 | ^~~~~~ 2023-09-25T16:53:02,133 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2023-09-25T16:53:02,134 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,135 660 | short intersect = intersectBulgesBulges(staticStem, 2023-09-25T16:53:02,135 | ^~~~~~~~~ 2023-09-25T16:53:02,136 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,136 650 | char *fnName = "getRotationAngleBxB"; 2023-09-25T16:53:02,137 | ^~~~~~ 2023-09-25T16:53:02,137 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2023-09-25T16:53:02,138 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,138 64 | switch (it) { 2023-09-25T16:53:02,139 | ^~~~~~ 2023-09-25T16:53:02,140 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,140 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,141 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,142 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,143 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,143 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,144 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,144 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,145 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2023-09-25T16:53:02,146 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,146 44 | char *fnName = "getRotationSign"; 2023-09-25T16:53:02,147 | ^~~~~~ 2023-09-25T16:53:02,148 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2023-09-25T16:53:02,148 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,149 105 | char *fnName = "getRotationSign"; 2023-09-25T16:53:02,149 | ^~~~~~ 2023-09-25T16:53:02,150 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2023-09-25T16:53:02,150 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,151 145 | char *fnName = "getRotationSign"; 2023-09-25T16:53:02,151 | ^~~~~~ 2023-09-25T16:53:02,152 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T16:53:02,152 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,153 222 | char *fnName = "fixIntersectionWithAncestor"; 2023-09-25T16:53:02,153 | ^~~~~~ 2023-09-25T16:53:02,153 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2023-09-25T16:53:02,154 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,155 366 | char *fnName = "handleIntersectionWithAncestor"; 2023-09-25T16:53:02,155 | ^~~~~~ 2023-09-25T16:53:02,156 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2023-09-25T16:53:02,157 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2023-09-25T16:53:02,158 498 | double stemSouthX = loopX; 2023-09-25T16:53:02,158 | ^~~~~~~~~~ 2023-09-25T16:53:02,159 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2023-09-25T16:53:02,160 497 | double stemNorthX = loopX; 2023-09-25T16:53:02,160 | ^~~~~~~~~~ 2023-09-25T16:53:02,161 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,162 482 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:53:02,162 | ^~~~~~ 2023-09-25T16:53:02,163 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2023-09-25T16:53:02,164 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,164 625 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:53:02,165 | ^~~~~~ 2023-09-25T16:53:02,166 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2023-09-25T16:53:02,166 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2023-09-25T16:53:02,167 715 | intersectionType it = noIntersection; 2023-09-25T16:53:02,168 | ^~ 2023-09-25T16:53:02,168 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,169 695 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:53:02,171 | ^~~~~~ 2023-09-25T16:53:02,172 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2023-09-25T16:53:02,173 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,173 759 | char *fnName = "setupExteriorBoundingBoxes"; 2023-09-25T16:53:02,174 | ^~~~~~ 2023-09-25T16:53:02,174 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2023-09-25T16:53:02,175 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,175 950 | char *fnName = "checkNodeAgainstAncestors"; 2023-09-25T16:53:02,176 | ^~~~~~ 2023-09-25T16:53:02,176 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2023-09-25T16:53:02,177 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,177 29 | char *fnName = "checkAndFixIntersections"; 2023-09-25T16:53:02,178 | ^~~~~~ 2023-09-25T16:53:02,178 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2023-09-25T16:53:02,179 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2023-09-25T16:53:02,179 75 | char *fnName = "checkRemainingIntersections"; 2023-09-25T16:53:02,180 | ^~~~~~ 2023-09-25T16:53:02,180 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2023-09-25T16:53:02,181 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2023-09-25T16:53:02,182 505 | short intersect = checkRemainingIntersections(myX, 2023-09-25T16:53:02,182 | ^~~~~~~~~ 2023-09-25T16:53:02,183 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T16:53:02,184 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T16:53:02,184 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:53:02,185 126 | intToMotiv(const int _int); 2023-09-25T16:53:02,186 | ^~~~~~~~~~ 2023-09-25T16:53:02,186 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2023-09-25T16:53:02,187 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2023-09-25T16:53:02,187 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:53:02,188 135 | printLBox(const loopBox *loop); 2023-09-25T16:53:02,189 | ^~~~~~~~~ 2023-09-25T16:53:02,189 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:53:02,190 139 | printSBox(const stemBox *stem); 2023-09-25T16:53:02,190 | ^~~~~~~~~ 2023-09-25T16:53:02,191 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:53:02,192 224 | printTree(const treeNode *node, 2023-09-25T16:53:02,193 | ^~~~~~~~~ 2023-09-25T16:53:02,255 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2023-09-25T16:53:02,256 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,256 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2023-09-25T16:53:02,257 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,258 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,258 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2023-09-25T16:53:02,259 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,259 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,259 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:53:02,260 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,260 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,261 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:53:02,261 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,262 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,262 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2023-09-25T16:53:02,263 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,263 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,264 142 | getRotationSign(const treeNode **const path, 2023-09-25T16:53:02,265 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:02,265 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,266 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2023-09-25T16:53:02,267 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,267 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,268 111 | checkBounds(const double l1, 2023-09-25T16:53:02,268 | ^~~~~~~~~~~ 2023-09-25T16:53:02,269 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,270 471 | TestLoopBulge(const double c[2], 2023-09-25T16:53:02,271 | ^~~~~~~~~~~~~ 2023-09-25T16:53:02,272 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,272 207 | ClosestPtPointTriangle(const double p[2], 2023-09-25T16:53:02,273 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,274 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,274 1056 | getChildNode(treeNode *tree, 2023-09-25T16:53:02,275 | ^~~~~~~~~~~~ 2023-09-25T16:53:02,276 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,276 1038 | getStemCenter(const treeNode *node, 2023-09-25T16:53:02,277 | ^~~~~~~~~~~~~ 2023-09-25T16:53:02,278 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,278 569 | getExterior(treeNode *node) 2023-09-25T16:53:02,279 | ^~~~~~~~~~~ 2023-09-25T16:53:02,280 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,281 537 | getPairedAngle(const treeNode *node) 2023-09-25T16:53:02,281 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:02,282 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,282 235 | rotateStemBox(stemBox *box, 2023-09-25T16:53:02,282 | ^~~~~~~~~~~~~ 2023-09-25T16:53:02,283 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,283 203 | rotateLoopBox(loopBox *box, 2023-09-25T16:53:02,284 | ^~~~~~~~~~~~~ 2023-09-25T16:53:02,284 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,285 243 | getArcAngleDegree(const config *cfg, 2023-09-25T16:53:02,285 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:53:02,286 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,286 216 | cfgPrintConfig(config *cfg) 2023-09-25T16:53:02,287 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:02,287 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,288 827 | sign(const double number) 2023-09-25T16:53:02,288 | ^~~~ 2023-09-25T16:53:02,289 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,289 816 | min(const double number1, 2023-09-25T16:53:02,290 | ^~~ 2023-09-25T16:53:02,291 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,292 530 | normalizeAngle(const double angle, 2023-09-25T16:53:02,292 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:02,293 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:53:02,294 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:53:02,294 116 | angleToDistance(const double radius, 2023-09-25T16:53:02,295 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:06,447 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2023-09-25T16:53:06,448 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘interiorChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:06,448 255 | double diffToStraight = MATH_PI - interiorChildAngle; 2023-09-25T16:53:06,449 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:06,450 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘interiorChildAngle’ was declared here 2023-09-25T16:53:06,450 228 | double interiorChildAngle; 2023-09-25T16:53:06,451 | ^~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,036 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2023-09-25T16:53:08,189 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2023-09-25T16:53:08,190 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2023-09-25T16:53:08,190 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:08,191 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:53:08,192 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:53:08,192 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:08,193 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:53:08,193 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:53:08,194 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:08,194 471 | const double *lineVector, 2023-09-25T16:53:08,195 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:53:08,195 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:08,196 103 | const double lineVector[2], 2023-09-25T16:53:08,196 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:53:08,197 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:08,197 472 | const double *point) 2023-09-25T16:53:08,198 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:53:08,199 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:08,199 104 | const double point[2]); 2023-09-25T16:53:08,200 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:53:08,200 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:53:08,201 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:08,202 846 | double alpha[3]; 2023-09-25T16:53:08,202 | ^~~~~ 2023-09-25T16:53:08,228 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2023-09-25T16:53:08,229 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2023-09-25T16:53:08,230 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2023-09-25T16:53:08,230 126 | intToMotiv(const int _int); 2023-09-25T16:53:08,231 | ^~~~~~~~~~ 2023-09-25T16:53:08,244 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,245 705 | cfgIsValid(config *cfg, 2023-09-25T16:53:08,245 | ^~~~~~~~~~ 2023-09-25T16:53:08,246 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,246 648 | cfgApplyChanges(config *cfg, 2023-09-25T16:53:08,247 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:08,248 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,248 243 | getArcAngleDegree(const config *cfg, 2023-09-25T16:53:08,249 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,250 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,250 216 | cfgPrintConfig(config *cfg) 2023-09-25T16:53:08,251 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:08,251 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,252 207 | cfgFreeConfig(config *cfg) 2023-09-25T16:53:08,253 | ^~~~~~~~~~~~~ 2023-09-25T16:53:08,253 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,254 184 | cfgCloneConfig(const config *cfg) 2023-09-25T16:53:08,254 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:08,255 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,255 827 | sign(const double number) 2023-09-25T16:53:08,256 | ^~~~ 2023-09-25T16:53:08,256 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,257 816 | min(const double number1, 2023-09-25T16:53:08,257 | ^~~ 2023-09-25T16:53:08,258 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,258 788 | normal(const double v[2], 2023-09-25T16:53:08,259 | ^~~~~~ 2023-09-25T16:53:08,260 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,260 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T16:53:08,261 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,261 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,262 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T16:53:08,263 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,263 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,264 592 | translatePointByVector(const double *point, 2023-09-25T16:53:08,265 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,266 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,267 579 | rotateVectorByAngle(const double *vector, 2023-09-25T16:53:08,267 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,268 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,269 530 | normalizeAngle(const double angle, 2023-09-25T16:53:08,269 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:08,270 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,271 514 | anglePtPtPt2D(const double *p1, 2023-09-25T16:53:08,271 | ^~~~~~~~~~~~~ 2023-09-25T16:53:08,272 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,272 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:53:08,273 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,274 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,275 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T16:53:08,275 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:08,276 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,277 366 | toRad(double angle) 2023-09-25T16:53:08,277 | ^~~~~ 2023-09-25T16:53:08,278 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:53:08,279 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,280 116 | angleToDistance(const double radius, 2023-09-25T16:53:08,280 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:08,281 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,281 108 | distanceToAngle(const double radius, 2023-09-25T16:53:08,282 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:08,282 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T16:53:08,283 62 | bubblesort(const int numValues, 2023-09-25T16:53:08,283 | ^~~~~~~~~~ 2023-09-25T16:53:09,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2023-09-25T16:53:09,617 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_slice’: 2023-09-25T16:53:09,618 src/ViennaRNA/plotting/alignments.c:147:34: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2023-09-25T16:53:09,619 147 | columnWidth = (columns == 0) ? length : columns; 2023-09-25T16:53:09,619 | ^~~~~~ 2023-09-25T16:53:09,620 src/ViennaRNA/plotting/alignments.c:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:09,621 245 | for (i = start; i <= end; i++) { 2023-09-25T16:53:09,621 | ^~ 2023-09-25T16:53:09,622 src/ViennaRNA/plotting/alignments.c:247:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:09,623 247 | if ((j > i) && (j <= end)) { 2023-09-25T16:53:09,624 | ^~ 2023-09-25T16:53:09,624 src/ViennaRNA/plotting/alignments.c:327:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:09,625 327 | if (length - currPos < max_len) 2023-09-25T16:53:09,625 | ^ 2023-09-25T16:53:09,626 src/ViennaRNA/plotting/alignments.c:334:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:09,627 334 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2023-09-25T16:53:09,628 | ^ 2023-09-25T16:53:09,637 In file included from src/ViennaRNA/plotting/alignments.c:26: 2023-09-25T16:53:09,638 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T16:53:09,639 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T16:53:09,639 134 | print_PS_coords(FILE *fh, 2023-09-25T16:53:09,640 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:09,641 src/ViennaRNA/plotting/ps_helpers.inc:114:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2023-09-25T16:53:09,641 114 | print_PS_sequence(FILE *fh, 2023-09-25T16:53:09,642 | ^~~~~~~~~~~~~~~~~ 2023-09-25T16:53:10,161 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2023-09-25T16:53:10,417 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2023-09-25T16:53:10,417 src/ViennaRNA/plotting/layouts.c:547:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:10,418 547 | int ret, n; 2023-09-25T16:53:10,418 | ^~~ 2023-09-25T16:53:10,420 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2023-09-25T16:53:10,421 src/ViennaRNA/plotting/layouts.c:570:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:10,421 570 | int ret, n; 2023-09-25T16:53:10,422 | ^~~ 2023-09-25T16:53:10,915 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2023-09-25T16:53:11,972 In function ‘determine_radius’, 2023-09-25T16:53:11,972 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:569:3: 2023-09-25T16:53:11,973 src/ViennaRNA/plotting/naview/naview.c:963:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:11,973 963 | lp->connections[imindit]->extruded = true; 2023-09-25T16:53:11,974 | ^ 2023-09-25T16:53:11,974 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2023-09-25T16:53:11,975 src/ViennaRNA/plotting/naview/naview.c:928:21: note: ‘imindit’ was declared here 2023-09-25T16:53:11,976 928 | int i,j,end,start,imindit; 2023-09-25T16:53:11,977 | ^~~~~~~ 2023-09-25T16:53:11,977 src/ViennaRNA/plotting/naview/naview.c:629:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:11,978 629 | cp = lp->connections[icend]; 2023-09-25T16:53:11,979 | ^ 2023-09-25T16:53:11,980 src/ViennaRNA/plotting/naview/naview.c:540:7: note: ‘imaxloop’ was declared here 2023-09-25T16:53:11,980 540 | int imaxloop; 2023-09-25T16:53:11,981 | ^~~~~~~~ 2023-09-25T16:53:12,723 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2023-09-25T16:53:12,857 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2023-09-25T16:53:12,858 src/ViennaRNA/plotting/plot_utils.c:205:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:12,859 205 | for (s = 0; s < n_seq; s++) { 2023-09-25T16:53:12,859 | ^ 2023-09-25T16:53:13,197 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2023-09-25T16:53:13,556 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2023-09-25T16:53:13,557 src/ViennaRNA/plotting/probabilities.c:296:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:13,558 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T16:53:13,559 | ^~~~~~~~~~~~ 2023-09-25T16:53:13,559 src/ViennaRNA/plotting/probabilities.c:296:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:13,560 296 | linbottom_size, linleft_num, linleft_size, linright_num, 2023-09-25T16:53:13,560 | ^~~~~~~~~~~ 2023-09-25T16:53:13,561 src/ViennaRNA/plotting/probabilities.c:295:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:13,561 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T16:53:13,562 | ^~~~~~~~~~~~~ 2023-09-25T16:53:13,562 src/ViennaRNA/plotting/probabilities.c:295:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:13,563 295 | int i, lintop_num, lintop_size, linbottom_num, 2023-09-25T16:53:13,563 | ^~~~~~~~~~ 2023-09-25T16:53:13,570 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2023-09-25T16:53:13,570 src/ViennaRNA/plotting/probabilities.c:847:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:13,571 847 | for(i = 0; i < length; i++){ 2023-09-25T16:53:13,571 | ^ 2023-09-25T16:53:13,572 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2023-09-25T16:53:13,573 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:13,574 880 | for(i = 0; i < actual_length; i++, actual_pos++){ 2023-09-25T16:53:13,574 | ^ 2023-09-25T16:53:13,596 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2023-09-25T16:53:13,597 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2023-09-25T16:53:13,598 src/ViennaRNA/plotting/ps_helpers.inc:134:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2023-09-25T16:53:13,598 134 | print_PS_coords(FILE *fh, 2023-09-25T16:53:13,599 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:14,813 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2023-09-25T16:53:15,073 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/svgArcs.inc:14, 2023-09-25T16:53:15,074 from src/ViennaRNA/plotting/structures.c:28: 2023-09-25T16:53:15,075 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:15,075 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:53:15,076 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-25T16:53:15,077 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:15,077 102 | isToTheRightPointVector(const double lineStart[2], 2023-09-25T16:53:15,078 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-25T16:53:15,079 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:471:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:15,080 471 | const double *lineVector, 2023-09-25T16:53:15,081 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2023-09-25T16:53:15,081 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:15,082 103 | const double lineVector[2], 2023-09-25T16:53:15,082 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2023-09-25T16:53:15,082 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:472:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2023-09-25T16:53:15,083 472 | const double *point) 2023-09-25T16:53:15,083 | ~~~~~~~~~~~~~~~^~~~~ 2023-09-25T16:53:15,084 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2023-09-25T16:53:15,084 104 | const double point[2]); 2023-09-25T16:53:15,085 | ~~~~~~~~~~~~~~^~~~~~~~ 2023-09-25T16:53:15,086 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2023-09-25T16:53:15,086 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:846:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:15,086 846 | double alpha[3]; 2023-09-25T16:53:15,087 | ^~~~~ 2023-09-25T16:53:15,201 src/ViennaRNA/plotting/structures.c: In function ‘rnaplot_EPS’: 2023-09-25T16:53:15,202 src/ViennaRNA/plotting/structures.c:171:18: warning: unused variable ‘Y’ [-Wunused-variable] 2023-09-25T16:53:15,203 171 | float *X, *Y; 2023-09-25T16:53:15,203 | ^ 2023-09-25T16:53:15,204 src/ViennaRNA/plotting/structures.c:171:14: warning: unused variable ‘X’ [-Wunused-variable] 2023-09-25T16:53:15,205 171 | float *X, *Y; 2023-09-25T16:53:15,205 | ^ 2023-09-25T16:53:15,206 src/ViennaRNA/plotting/structures.c:168:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2023-09-25T16:53:15,207 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:53:15,207 | ^~~~ 2023-09-25T16:53:15,208 src/ViennaRNA/plotting/structures.c:168:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2023-09-25T16:53:15,208 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:53:15,209 | ^~~~ 2023-09-25T16:53:15,210 src/ViennaRNA/plotting/structures.c:168:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2023-09-25T16:53:15,210 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:53:15,211 | ^~~~ 2023-09-25T16:53:15,212 src/ViennaRNA/plotting/structures.c:168:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2023-09-25T16:53:15,212 168 | float xmin, xmax, ymin, ymax; 2023-09-25T16:53:15,213 | ^~~~ 2023-09-25T16:53:15,215 src/ViennaRNA/plotting/structures.c: In function ‘PS_rna_plot_snoop_a’: 2023-09-25T16:53:15,216 src/ViennaRNA/plotting/structures.c:631:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:15,216 631 | if (cut_point > 0 && cut_point <= strlen(string)) 2023-09-25T16:53:15,217 | ^~ 2023-09-25T16:53:15,250 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: At top level: 2023-09-25T16:53:15,251 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:839:1: warning: ‘circle’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,251 839 | circle(const double P1[2], 2023-09-25T16:53:15,252 | ^~~~~~ 2023-09-25T16:53:15,253 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:827:1: warning: ‘sign’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,253 827 | sign(const double number) 2023-09-25T16:53:15,254 | ^~~~ 2023-09-25T16:53:15,255 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:816:1: warning: ‘min’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,255 816 | min(const double number1, 2023-09-25T16:53:15,256 | ^~~ 2023-09-25T16:53:15,256 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:788:1: warning: ‘normal’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,257 788 | normal(const double v[2], 2023-09-25T16:53:15,257 | ^~~~~~ 2023-09-25T16:53:15,258 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:778:1: warning: ‘vector’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,259 778 | vector(const double pStart[2], 2023-09-25T16:53:15,259 | ^~~~~~ 2023-09-25T16:53:15,260 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:747:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,260 747 | getCutPointsOfCircleAndLine(const double *center, 2023-09-25T16:53:15,261 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,261 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:632:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,262 632 | getCutPointsOfCircles(const double *c1, 2023-09-25T16:53:15,262 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,262 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:592:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,263 592 | translatePointByVector(const double *point, 2023-09-25T16:53:15,263 | ^~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,263 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:579:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,264 579 | rotateVectorByAngle(const double *vector, 2023-09-25T16:53:15,264 | ^~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,265 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:530:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,266 530 | normalizeAngle(const double angle, 2023-09-25T16:53:15,266 | ^~~~~~~~~~~~~~ 2023-09-25T16:53:15,267 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:514:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,268 514 | anglePtPtPt2D(const double *p1, 2023-09-25T16:53:15,269 | ^~~~~~~~~~~~~ 2023-09-25T16:53:15,269 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:470:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,270 470 | isToTheRightPointVector(const double *lineStart, 2023-09-25T16:53:15,271 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,272 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:383:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,272 383 | vectorLength2DSquared(const double vector[2]) 2023-09-25T16:53:15,273 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:15,274 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:366:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,274 366 | toRad(double angle) 2023-09-25T16:53:15,275 | ^~~~~ 2023-09-25T16:53:15,276 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘toDegree’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,277 359 | toDegree(double angle) 2023-09-25T16:53:15,277 | ^~~~~~~~ 2023-09-25T16:53:15,278 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2023-09-25T16:53:15,279 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,280 116 | angleToDistance(const double radius, 2023-09-25T16:53:15,281 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:15,281 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,282 108 | distanceToAngle(const double radius, 2023-09-25T16:53:15,282 | ^~~~~~~~~~~~~~~ 2023-09-25T16:53:15,283 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2023-09-25T16:53:15,283 62 | bubblesort(const int numValues, 2023-09-25T16:53:15,284 | ^~~~~~~~~~ 2023-09-25T16:53:16,559 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/ribo.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ribo.o -fopenmp 2023-09-25T16:53:18,204 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2023-09-25T16:53:18,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequence.o -fopenmp 2023-09-25T16:53:19,462 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2023-09-25T16:53:19,700 src/ViennaRNA/snofold.c: In function ‘snofold’: 2023-09-25T16:53:19,700 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,701 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T16:53:19,702 | ^~~~~~~~~ 2023-09-25T16:53:19,702 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,703 369 | int length, energy, bonus, bonus_cnt, s; 2023-09-25T16:53:19,704 | ^~~~~ 2023-09-25T16:53:19,706 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2023-09-25T16:53:19,707 src/ViennaRNA/snofold.c:571:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:53:19,708 571 | if (strlen(strings[s]) != length) 2023-09-25T16:53:19,708 | ^~ 2023-09-25T16:53:19,712 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2023-09-25T16:53:19,713 src/ViennaRNA/snofold.c:603:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,713 603 | int bonus, n_seq, s; 2023-09-25T16:53:19,714 | ^~~~~ 2023-09-25T16:53:19,717 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2023-09-25T16:53:19,718 src/ViennaRNA/snofold.c:767:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,719 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T16:53:19,720 | ^~ 2023-09-25T16:53:19,720 src/ViennaRNA/snofold.c:767:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,721 767 | int ml, ss, cij, traced, i1, j1, p, q; 2023-09-25T16:53:19,721 | ^~ 2023-09-25T16:53:19,722 src/ViennaRNA/snofold.c:754:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,722 754 | int bonus, n_seq, *type; 2023-09-25T16:53:19,722 | ^~~~~ 2023-09-25T16:53:19,729 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2023-09-25T16:53:19,730 src/ViennaRNA/snofold.c:1132:30: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,730 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T16:53:19,731 | ^~ 2023-09-25T16:53:19,731 src/ViennaRNA/snofold.c:1132:26: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:19,732 1132 | int ml, cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2023-09-25T16:53:19,733 | ^~ 2023-09-25T16:53:19,733 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2023-09-25T16:53:19,734 src/ViennaRNA/snofold.c:1290:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-25T16:53:19,734 1290 | if (strlen(strings[s]) != length) 2023-09-25T16:53:19,735 | ^~ 2023-09-25T16:53:19,767 src/ViennaRNA/snofold.c: At top level: 2023-09-25T16:53:19,768 src/ViennaRNA/snofold.c:154:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2023-09-25T16:53:19,768 154 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2023-09-25T16:53:19,769 | ^~~~~ 2023-09-25T16:53:22,221 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2023-09-25T16:53:22,466 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2023-09-25T16:53:22,467 src/ViennaRNA/snoop.c:249:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,468 249 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:53:22,469 | ^~ 2023-09-25T16:53:22,478 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2023-09-25T16:53:22,478 src/ViennaRNA/snoop.c:836:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,479 836 | int min_k, max_k; 2023-09-25T16:53:22,480 | ^~~~~ 2023-09-25T16:53:22,480 src/ViennaRNA/snoop.c:836:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,481 836 | int min_k, max_k; 2023-09-25T16:53:22,482 | ^~~~~ 2023-09-25T16:53:22,494 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2023-09-25T16:53:22,495 src/ViennaRNA/snoop.c:1141:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,495 1141 | int Loop_E; 2023-09-25T16:53:22,496 | ^~~~~~ 2023-09-25T16:53:22,496 src/ViennaRNA/snoop.c:1139:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,497 1139 | int Loop_D; 2023-09-25T16:53:22,498 | ^~~~~~ 2023-09-25T16:53:22,498 src/ViennaRNA/snoop.c:1138:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,499 1138 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,500 | ^~~~~~~~~ 2023-09-25T16:53:22,500 src/ViennaRNA/snoop.c:1138:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,501 1138 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,501 | ^~~~~~~~~ 2023-09-25T16:53:22,502 src/ViennaRNA/snoop.c:1112:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,502 1112 | int max_pos; 2023-09-25T16:53:22,503 | ^~~~~~~ 2023-09-25T16:53:22,504 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2023-09-25T16:53:22,505 src/ViennaRNA/snoop.c:1433:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,505 1433 | int min_k, max_k; 2023-09-25T16:53:22,506 | ^~~~~ 2023-09-25T16:53:22,506 src/ViennaRNA/snoop.c:1433:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,507 1433 | int min_k, max_k; 2023-09-25T16:53:22,507 | ^~~~~ 2023-09-25T16:53:22,513 src/ViennaRNA/snoop.c:1376:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,513 1376 | int Loop_E; 2023-09-25T16:53:22,514 | ^~~~~~ 2023-09-25T16:53:22,514 src/ViennaRNA/snoop.c:1374:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,515 1374 | int Loop_D; 2023-09-25T16:53:22,515 | ^~~~~~ 2023-09-25T16:53:22,516 src/ViennaRNA/snoop.c:1373:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,516 1373 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,517 | ^~~~~~~~~ 2023-09-25T16:53:22,517 src/ViennaRNA/snoop.c:1373:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,518 1373 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,519 | ^~~~~~~~~ 2023-09-25T16:53:22,519 src/ViennaRNA/snoop.c:1347:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,520 1347 | int max_pos; 2023-09-25T16:53:22,521 | ^~~~~~~ 2023-09-25T16:53:22,526 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2023-09-25T16:53:22,528 src/ViennaRNA/snoop.c:1818:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,528 1818 | int min_k, max_k; 2023-09-25T16:53:22,529 | ^~~~~ 2023-09-25T16:53:22,530 src/ViennaRNA/snoop.c:1818:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,530 1818 | int min_k, max_k; 2023-09-25T16:53:22,531 | ^~~~~ 2023-09-25T16:53:22,535 src/ViennaRNA/snoop.c:1764:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,535 1764 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:53:22,536 | ^~ 2023-09-25T16:53:22,540 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2023-09-25T16:53:22,542 src/ViennaRNA/snoop.c:2015:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,542 2015 | int min_k, max_k; 2023-09-25T16:53:22,543 | ^~~~~ 2023-09-25T16:53:22,544 src/ViennaRNA/snoop.c:2015:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,544 2015 | int min_k, max_k; 2023-09-25T16:53:22,545 | ^~~~~ 2023-09-25T16:53:22,548 src/ViennaRNA/snoop.c:1959:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,549 1959 | int Loop_E; 2023-09-25T16:53:22,549 | ^~~~~~ 2023-09-25T16:53:22,550 src/ViennaRNA/snoop.c:1957:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,550 1957 | int Loop_D; 2023-09-25T16:53:22,551 | ^~~~~~ 2023-09-25T16:53:22,552 src/ViennaRNA/snoop.c:1956:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,552 1956 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,553 | ^~~~~~~~~ 2023-09-25T16:53:22,554 src/ViennaRNA/snoop.c:1956:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,554 1956 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,554 | ^~~~~~~~~ 2023-09-25T16:53:22,555 src/ViennaRNA/snoop.c:1947:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,556 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:53:22,556 | ^~~~~ 2023-09-25T16:53:22,557 src/ViennaRNA/snoop.c:1947:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,558 1947 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2023-09-25T16:53:22,558 | ^~~~~ 2023-09-25T16:53:22,562 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2023-09-25T16:53:22,564 src/ViennaRNA/snoop.c:2102:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,564 2102 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2023-09-25T16:53:22,565 | ^ 2023-09-25T16:53:22,571 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2023-09-25T16:53:22,573 src/ViennaRNA/snoop.c:2437:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,574 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T16:53:22,574 | ^~~~ 2023-09-25T16:53:22,575 src/ViennaRNA/snoop.c:2437:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,576 2437 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2023-09-25T16:53:22,577 | ^~~ 2023-09-25T16:53:22,578 src/ViennaRNA/snoop.c:2304:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,579 2304 | int u; 2023-09-25T16:53:22,579 | ^ 2023-09-25T16:53:22,580 src/ViennaRNA/snoop.c:2298:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,581 2298 | int Loop_D; 2023-09-25T16:53:22,581 | ^~~~~~ 2023-09-25T16:53:22,582 src/ViennaRNA/snoop.c:2297:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,583 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:53:22,583 | ^~~~~~ 2023-09-25T16:53:22,584 src/ViennaRNA/snoop.c:2297:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,585 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:53:22,586 | ^~~~~~~~~ 2023-09-25T16:53:22,587 src/ViennaRNA/snoop.c:2297:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,587 2297 | int Duplex_El, Duplex_Er, Loop_E; 2023-09-25T16:53:22,588 | ^~~~~~~~~ 2023-09-25T16:53:22,589 src/ViennaRNA/snoop.c:2289:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,589 2289 | int i, j, E, n_max; 2023-09-25T16:53:22,590 | ^~~~~ 2023-09-25T16:53:22,591 src/ViennaRNA/snoop.c:2289:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,592 2289 | int i, j, E, n_max; 2023-09-25T16:53:22,592 | ^ 2023-09-25T16:53:22,597 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2023-09-25T16:53:22,599 src/ViennaRNA/snoop.c:2588:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,599 2588 | int min_k, max_k; 2023-09-25T16:53:22,600 | ^~~~~ 2023-09-25T16:53:22,601 src/ViennaRNA/snoop.c:2588:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,602 2588 | int min_k, max_k; 2023-09-25T16:53:22,602 | ^~~~~ 2023-09-25T16:53:22,614 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T16:53:22,617 src/ViennaRNA/snoop.c:2904:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,617 2904 | int min_k, max_k; 2023-09-25T16:53:22,618 | ^~~~~ 2023-09-25T16:53:22,620 src/ViennaRNA/snoop.c:2904:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,620 2904 | int min_k, max_k; 2023-09-25T16:53:22,621 | ^~~~~ 2023-09-25T16:53:22,627 src/ViennaRNA/snoop.c:2839:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,628 2839 | int Loop_E; 2023-09-25T16:53:22,628 | ^~~~~~ 2023-09-25T16:53:22,630 src/ViennaRNA/snoop.c:2837:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,630 2837 | int Loop_D; 2023-09-25T16:53:22,631 | ^~~~~~ 2023-09-25T16:53:22,633 src/ViennaRNA/snoop.c:2836:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,633 2836 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,633 | ^~~~~~~~~ 2023-09-25T16:53:22,635 src/ViennaRNA/snoop.c:2836:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,636 2836 | int Duplex_El, Duplex_Er; 2023-09-25T16:53:22,636 | ^~~~~~~~~ 2023-09-25T16:53:22,638 src/ViennaRNA/snoop.c:2821:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,639 2821 | int max_pos_j = INF; 2023-09-25T16:53:22,639 | ^~~~~~~~~ 2023-09-25T16:53:22,641 src/ViennaRNA/snoop.c:2807:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,641 2807 | int max_pos; 2023-09-25T16:53:22,642 | ^~~~~~~ 2023-09-25T16:53:22,647 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2023-09-25T16:53:22,650 src/ViennaRNA/snoop.c:3152:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,650 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T16:53:22,651 | ^~~~ 2023-09-25T16:53:22,653 src/ViennaRNA/snoop.c:3152:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:22,653 3152 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2023-09-25T16:53:22,654 | ^~~ 2023-09-25T16:53:23,757 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2023-09-25T16:53:23,760 src/ViennaRNA/snoop.c:2771:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:23,760 2771 | free(struc_loop); 2023-09-25T16:53:23,761 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:53:23,762 src/ViennaRNA/snoop.c:2524:12: note: ‘struc_loop’ was declared here 2023-09-25T16:53:23,763 2524 | char *struc_loop; 2023-09-25T16:53:23,764 | ^~~~~~~~~~ 2023-09-25T16:53:24,347 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2023-09-25T16:53:24,347 src/ViennaRNA/snoop.c:1074:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:24,348 1074 | free(struc_loop); 2023-09-25T16:53:24,348 | ^~~~~~~~~~~~~~~~ 2023-09-25T16:53:24,349 src/ViennaRNA/snoop.c:736:10: note: ‘struc_loop’ was declared here 2023-09-25T16:53:24,350 736 | char *struc_loop; 2023-09-25T16:53:24,350 | ^~~~~~~~~~ 2023-09-25T16:53:28,249 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2023-09-25T16:53:28,253 src/ViennaRNA/snoop.c:3374:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:28,253 3374 | return mfe; 2023-09-25T16:53:28,253 | ^~~ 2023-09-25T16:53:28,256 src/ViennaRNA/snoop.c:3232:13: note: ‘u’ was declared here 2023-09-25T16:53:28,256 3232 | int u; 2023-09-25T16:53:28,256 | ^ 2023-09-25T16:53:28,259 src/ViennaRNA/snoop.c:3448:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:28,259 3448 | char *struc_loop; 2023-09-25T16:53:28,260 | ^~~~~~~~~~ 2023-09-25T16:53:29,333 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2023-09-25T16:53:29,335 src/ViennaRNA/snoop.c:2992:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:29,336 2992 | position_j[i] = min_j_colonne; 2023-09-25T16:53:29,336 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-25T16:53:29,338 src/ViennaRNA/snoop.c:2820:7: note: ‘min_j_colonne’ was declared here 2023-09-25T16:53:29,339 2820 | int min_j_colonne; 2023-09-25T16:53:29,339 | ^~~~~~~~~~~~~ 2023-09-25T16:53:30,069 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/special_const.o -fopenmp 2023-09-25T16:53:30,161 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2023-09-25T16:53:31,139 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt.o -fopenmp 2023-09-25T16:53:31,461 In file included from src/ViennaRNA/subopt.c:38: 2023-09-25T16:53:31,462 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_reduce_comparative’: 2023-09-25T16:53:31,462 src/ViennaRNA/loops/external_sc.inc:865:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,463 865 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,464 | ^ 2023-09-25T16:53:31,464 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_reduce_comparative’: 2023-09-25T16:53:31,465 src/ViennaRNA/loops/external_sc.inc:898:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,466 898 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,467 | ^ 2023-09-25T16:53:31,468 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:53:31,468 src/ViennaRNA/loops/external_sc.inc:969:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,468 969 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,469 | ^ 2023-09-25T16:53:31,469 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_ext_comparative’: 2023-09-25T16:53:31,470 src/ViennaRNA/loops/external_sc.inc:993:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,470 993 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,471 | ^ 2023-09-25T16:53:31,473 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:53:31,474 src/ViennaRNA/loops/external_sc.inc:1121:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,475 1121 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,476 | ^ 2023-09-25T16:53:31,477 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_reduce_to_stem_comparative’: 2023-09-25T16:53:31,478 src/ViennaRNA/loops/external_sc.inc:1145:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,479 1145 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,479 | ^ 2023-09-25T16:53:31,480 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem_comparative’: 2023-09-25T16:53:31,480 src/ViennaRNA/loops/external_sc.inc:1292:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,481 1292 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,482 | ^ 2023-09-25T16:53:31,482 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_split_comparative’: 2023-09-25T16:53:31,483 src/ViennaRNA/loops/external_sc.inc:1320:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,483 1320 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,484 | ^ 2023-09-25T16:53:31,485 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext_comparative’: 2023-09-25T16:53:31,485 src/ViennaRNA/loops/external_sc.inc:1348:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,486 1348 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,487 | ^ 2023-09-25T16:53:31,487 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem_comparative’: 2023-09-25T16:53:31,488 src/ViennaRNA/loops/external_sc.inc:1404:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,489 1404 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,490 | ^ 2023-09-25T16:53:31,490 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_ext_cb_user_split_comparative’: 2023-09-25T16:53:31,491 src/ViennaRNA/loops/external_sc.inc:1426:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,492 1426 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,492 | ^ 2023-09-25T16:53:31,493 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext_comparative’: 2023-09-25T16:53:31,494 src/ViennaRNA/loops/external_sc.inc:1450:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,496 1450 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,504 | ^ 2023-09-25T16:53:31,505 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_split_in_ext_stem1_comparative’: 2023-09-25T16:53:31,506 src/ViennaRNA/loops/external_sc.inc:1596:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,506 1596 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,507 | ^ 2023-09-25T16:53:31,508 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_split_in_stem_ext1_comparative’: 2023-09-25T16:53:31,509 src/ViennaRNA/loops/external_sc.inc:1628:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,510 1628 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,511 | ^ 2023-09-25T16:53:31,511 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f5_cb_user_split_in_ext_stem1_comparative’: 2023-09-25T16:53:31,512 src/ViennaRNA/loops/external_sc.inc:1677:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,513 1677 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,513 | ^ 2023-09-25T16:53:31,514 src/ViennaRNA/loops/external_sc.inc: In function ‘sc_f3_cb_user_split_in_stem_ext1_comparative’: 2023-09-25T16:53:31,515 src/ViennaRNA/loops/external_sc.inc:1698:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,517 1698 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,518 | ^ 2023-09-25T16:53:31,523 In file included from src/ViennaRNA/subopt.c:40: 2023-09-25T16:53:31,523 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_up_comparative’: 2023-09-25T16:53:31,524 src/ViennaRNA/loops/internal_sc.inc:71:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,525 71 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,526 | ^ 2023-09-25T16:53:31,526 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_comparative’: 2023-09-25T16:53:31,527 src/ViennaRNA/loops/internal_sc.inc:110:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,528 110 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,528 | ^ 2023-09-25T16:53:31,529 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_bp_local_comparative’: 2023-09-25T16:53:31,530 src/ViennaRNA/loops/internal_sc.inc:141:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,530 141 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,531 | ^ 2023-09-25T16:53:31,532 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_stack_comparative’: 2023-09-25T16:53:31,532 src/ViennaRNA/loops/internal_sc.inc:183:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,533 183 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,534 | ^ 2023-09-25T16:53:31,534 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_user_comparative’: 2023-09-25T16:53:31,535 src/ViennaRNA/loops/internal_sc.inc:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,536 222 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,537 | ^ 2023-09-25T16:53:31,541 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_up_comparative’: 2023-09-25T16:53:31,542 src/ViennaRNA/loops/internal_sc.inc:726:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,543 726 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,543 | ^ 2023-09-25T16:53:31,545 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack’: 2023-09-25T16:53:31,546 src/ViennaRNA/loops/internal_sc.inc:757:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:31,546 757 | if ((i == 1) && (j + 1 == k) && (l == data->n)) { 2023-09-25T16:53:31,547 | ^~ 2023-09-25T16:53:31,547 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_stack_comparative’: 2023-09-25T16:53:31,548 src/ViennaRNA/loops/internal_sc.inc:780:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,548 780 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,549 | ^ 2023-09-25T16:53:31,550 src/ViennaRNA/loops/internal_sc.inc: In function ‘sc_int_cb_ext_user_comparative’: 2023-09-25T16:53:31,551 src/ViennaRNA/loops/internal_sc.inc:821:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,552 821 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,553 | ^ 2023-09-25T16:53:31,561 In file included from src/ViennaRNA/subopt.c:41: 2023-09-25T16:53:31,562 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_comparative’: 2023-09-25T16:53:31,562 src/ViennaRNA/loops/multibranch_sc.inc:76:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,563 76 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,564 | ^ 2023-09-25T16:53:31,564 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_bp_local_comparative’: 2023-09-25T16:53:31,565 src/ViennaRNA/loops/multibranch_sc.inc:95:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,566 95 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,567 | ^ 2023-09-25T16:53:31,568 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_up_comparative’: 2023-09-25T16:53:31,568 src/ViennaRNA/loops/multibranch_sc.inc:124:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,569 124 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,570 | ^ 2023-09-25T16:53:31,570 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_up_comparative’: 2023-09-25T16:53:31,571 src/ViennaRNA/loops/multibranch_sc.inc:155:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,572 155 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,572 | ^ 2023-09-25T16:53:31,573 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_user_comparative’: 2023-09-25T16:53:31,574 src/ViennaRNA/loops/multibranch_sc.inc:328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,574 328 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,575 | ^ 2023-09-25T16:53:31,576 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_5_user_comparative’: 2023-09-25T16:53:31,576 src/ViennaRNA/loops/multibranch_sc.inc:397:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,577 397 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,577 | ^ 2023-09-25T16:53:31,578 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_3_user_comparative’: 2023-09-25T16:53:31,578 src/ViennaRNA/loops/multibranch_sc.inc:530:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,579 530 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,579 | ^ 2023-09-25T16:53:31,580 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_mb_pair_cb_53_user_comparative’: 2023-09-25T16:53:31,580 src/ViennaRNA/loops/multibranch_sc.inc:663:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,581 663 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,581 | ^ 2023-09-25T16:53:31,581 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_stem_user_comparative’: 2023-09-25T16:53:31,582 src/ViennaRNA/loops/multibranch_sc.inc:802:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,582 802 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,583 | ^ 2023-09-25T16:53:31,584 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_comparative’: 2023-09-25T16:53:31,584 src/ViennaRNA/loops/multibranch_sc.inc:849:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,585 849 | for (s = 0; s < data->n_seq; s++) { 2023-09-25T16:53:31,585 | ^ 2023-09-25T16:53:31,586 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_reduce_ml_user_comparative’: 2023-09-25T16:53:31,587 src/ViennaRNA/loops/multibranch_sc.inc:888:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,587 888 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,588 | ^ 2023-09-25T16:53:31,589 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_decomp_ml_user_comparative’: 2023-09-25T16:53:31,589 src/ViennaRNA/loops/multibranch_sc.inc:947:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,590 947 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,590 | ^ 2023-09-25T16:53:31,591 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_stack_comparative’: 2023-09-25T16:53:31,592 src/ViennaRNA/loops/multibranch_sc.inc:983:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,592 983 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,593 | ^ 2023-09-25T16:53:31,593 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_closing_user_comparative’: 2023-09-25T16:53:31,594 src/ViennaRNA/loops/multibranch_sc.inc:1020:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,595 1020 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,595 | ^ 2023-09-25T16:53:31,596 src/ViennaRNA/loops/multibranch_sc.inc: In function ‘sc_ml_coax_enclosed_user_comparative’: 2023-09-25T16:53:31,597 src/ViennaRNA/loops/multibranch_sc.inc:1079:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,597 1079 | for (s = 0; s < data->n_seq; s++) 2023-09-25T16:53:31,599 | ^ 2023-09-25T16:53:31,610 src/ViennaRNA/subopt.c: In function ‘vrna_subopt_cb’: 2023-09-25T16:53:31,610 src/ViennaRNA/subopt.c:510:29: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:31,611 510 | unsigned int *so, *ss; 2023-09-25T16:53:31,611 | ^~ 2023-09-25T16:53:31,612 src/ViennaRNA/subopt.c:510:24: warning: variable ‘so’ set but not used [-Wunused-but-set-variable] 2023-09-25T16:53:31,612 510 | unsigned int *so, *ss; 2023-09-25T16:53:31,613 | ^~ 2023-09-25T16:53:31,646 src/ViennaRNA/subopt.c: In function ‘scan_fms3’: 2023-09-25T16:53:31,648 src/ViennaRNA/subopt.c:2463:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,648 2463 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T16:53:31,649 | ^ 2023-09-25T16:53:31,653 src/ViennaRNA/subopt.c:2545:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,653 2545 | s3 = ((i < length) && (sn[i] == sn[i + 1])) ? S1[i + 1] : -1; 2023-09-25T16:53:31,654 | ^ 2023-09-25T16:53:31,664 src/ViennaRNA/subopt.c: In function ‘repeat’: 2023-09-25T16:53:31,666 src/ViennaRNA/subopt.c:2907:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,667 2907 | if (se[sn[i]] > i) 2023-09-25T16:53:31,667 | ^ 2023-09-25T16:53:31,669 src/ViennaRNA/subopt.c:2910:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:31,670 2910 | if (j - 1 > se[sn[i]]) 2023-09-25T16:53:31,670 | ^ 2023-09-25T16:53:31,672 src/ViennaRNA/subopt.c:2927:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:31,673 2927 | if (i + 1 <= se[sn[nick]]) 2023-09-25T16:53:31,673 | ^~ 2023-09-25T16:53:31,675 src/ViennaRNA/subopt.c:2930:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:31,675 2930 | if (se[sn[nick]] + 1 <= j - 1) 2023-09-25T16:53:31,676 | ^~ 2023-09-25T16:53:41,530 In file included from src/ViennaRNA/subopt.c:44: 2023-09-25T16:53:41,530 In function ‘print_structure’, 2023-09-25T16:53:41,531 inlined from ‘vrna_subopt’ at src/ViennaRNA/subopt.c:441:7: 2023-09-25T16:53:41,532 src/ViennaRNA/color_output.inc:61:7: warning: ‘SeQ’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-25T16:53:41,532 61 | fprintf(fp, "%s\n", structure); 2023-09-25T16:53:41,533 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-25T16:53:41,534 src/ViennaRNA/subopt.c: In function ‘vrna_subopt’: 2023-09-25T16:53:41,534 src/ViennaRNA/subopt.c:426:14: note: ‘SeQ’ was declared here 2023-09-25T16:53:41,535 426 | char *SeQ, *energies = NULL; 2023-09-25T16:53:41,535 | ^~~ 2023-09-25T16:53:42,317 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt_zuker.o -fopenmp 2023-09-25T16:53:42,493 src/ViennaRNA/subopt_zuker.c: In function ‘vrna_subopt_zuker’: 2023-09-25T16:53:42,494 src/ViennaRNA/subopt_zuker.c:256:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,494 256 | if (hc->up_int[l + 1] < u2) 2023-09-25T16:53:42,495 | ^ 2023-09-25T16:53:42,495 src/ViennaRNA/subopt_zuker.c:268:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,496 268 | if (hc->up_int[i + 1] < u1) 2023-09-25T16:53:42,496 | ^ 2023-09-25T16:53:42,497 src/ViennaRNA/subopt_zuker.c:302:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,497 302 | if ((hc->up_ml[i + 1] >= u) && 2023-09-25T16:53:42,498 | ^~ 2023-09-25T16:53:42,509 src/ViennaRNA/subopt_zuker.c: In function ‘backtrack’: 2023-09-25T16:53:42,510 src/ViennaRNA/subopt_zuker.c:788:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,510 788 | if (hc->up_int[i + 1] < u1) 2023-09-25T16:53:42,511 | ^ 2023-09-25T16:53:42,511 src/ViennaRNA/subopt_zuker.c:800:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,512 800 | if (hc->up_int[l + 1] < u2) 2023-09-25T16:53:42,512 | ^ 2023-09-25T16:53:42,514 src/ViennaRNA/subopt_zuker.c:857:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,515 857 | if (hc->up_ml[i + 1] < u1) 2023-09-25T16:53:42,515 | ^ 2023-09-25T16:53:42,517 src/ViennaRNA/subopt_zuker.c:898:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:42,517 898 | if ((hc->up_ml[i + 1] >= u1) && 2023-09-25T16:53:42,518 | ^~ 2023-09-25T16:53:44,838 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2023-09-25T16:53:44,982 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2023-09-25T16:53:44,982 src/ViennaRNA/treedist.c:724:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,983 724 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T16:53:44,984 | ^ 2023-09-25T16:53:44,984 src/ViennaRNA/treedist.c:745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,985 745 | for (k = 0; k < strlen(ll); k++) { 2023-09-25T16:53:44,986 | ^ 2023-09-25T16:53:44,987 src/ViennaRNA/treedist.c:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,987 771 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2023-09-25T16:53:44,988 | ^ 2023-09-25T16:53:44,989 src/ViennaRNA/treedist.c:775:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,989 775 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2023-09-25T16:53:44,990 | ^ 2023-09-25T16:53:44,991 src/ViennaRNA/treedist.c:778:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,991 778 | for (k = 0; k < strlen(ll); k++) 2023-09-25T16:53:44,992 | ^ 2023-09-25T16:53:44,992 src/ViennaRNA/treedist.c:780:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-25T16:53:44,993 780 | for (k = 0; k < strlen(ll); k++) 2023-09-25T16:53:44,994 | ^ 2023-09-25T16:53:46,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2023-09-25T16:53:46,217 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_centroid’: 2023-09-25T16:53:46,218 src/ViennaRNA/unstructured_domains.c:366:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,218 366 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:53:46,219 | ^ 2023-09-25T16:53:46,220 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_motifs_MEA’: 2023-09-25T16:53:46,221 src/ViennaRNA/unstructured_domains.c:435:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,221 435 | for (i = ptr->i; i <= ptr->j; i++) 2023-09-25T16:53:46,222 | ^~ 2023-09-25T16:53:46,224 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motif_size_at’: 2023-09-25T16:53:46,225 src/ViennaRNA/unstructured_domains.c:679:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,225 679 | if ((i > 0) && (i <= vc->length)) { 2023-09-25T16:53:46,226 | ^~ 2023-09-25T16:53:46,226 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_get_motifs_at’: 2023-09-25T16:53:46,227 src/ViennaRNA/unstructured_domains.c:722:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,228 722 | if ((i > 0) && (i <= vc->length)) 2023-09-25T16:53:46,228 | ^~ 2023-09-25T16:53:46,229 src/ViennaRNA/unstructured_domains.c: In function ‘vrna_ud_detect_motifs’: 2023-09-25T16:53:46,230 src/ViennaRNA/unstructured_domains.c:748:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,230 748 | while (l < vc->length) { 2023-09-25T16:53:46,231 | ^ 2023-09-25T16:53:46,231 src/ViennaRNA/unstructured_domains.c:750:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,232 750 | while (l < vc->length) { 2023-09-25T16:53:46,233 | ^ 2023-09-25T16:53:46,233 src/ViennaRNA/unstructured_domains.c:757:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,234 757 | if (l < vc->length) { 2023-09-25T16:53:46,235 | ^ 2023-09-25T16:53:46,236 src/ViennaRNA/unstructured_domains.c:761:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,236 761 | if (l == vc->length) 2023-09-25T16:53:46,237 | ^~ 2023-09-25T16:53:46,238 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MFE_matrix’: 2023-09-25T16:53:46,239 src/ViennaRNA/unstructured_domains.c:1122:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,239 1122 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:53:46,239 | ^ 2023-09-25T16:53:46,240 src/ViennaRNA/unstructured_domains.c:1138:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,240 1138 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:53:46,241 | ^ 2023-09-25T16:53:46,241 src/ViennaRNA/unstructured_domains.c:1140:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,242 1140 | if (u <= d) { 2023-09-25T16:53:46,242 | ^~ 2023-09-25T16:53:46,243 src/ViennaRNA/unstructured_domains.c:1147:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-25T16:53:46,243 1147 | if (u < d) 2023-09-25T16:53:46,244 | ^ 2023-09-25T16:53:46,244 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix’: 2023-09-25T16:53:46,245 src/ViennaRNA/unstructured_domains.c:1185:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,245 1185 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:53:46,246 | ^ 2023-09-25T16:53:46,246 src/ViennaRNA/unstructured_domains.c:1201:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,247 1201 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T16:53:46,248 | ^ 2023-09-25T16:53:46,248 src/ViennaRNA/unstructured_domains.c:1230:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,249 1230 | for (m = 0; m < domains_up->uniq_motif_count; m++) { 2023-09-25T16:53:46,249 | ^ 2023-09-25T16:53:46,250 src/ViennaRNA/unstructured_domains.c:1240:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,250 1240 | for (k = 0; k < domains_up->motif_count; k++) 2023-09-25T16:53:46,251 | ^ 2023-09-25T16:53:46,252 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MFE_matrix_exhaustive’: 2023-09-25T16:53:46,252 src/ViennaRNA/unstructured_domains.c:1352:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,253 1352 | for (k = 0; k < domains_up->uniq_motif_count; k++) { 2023-09-25T16:53:46,253 | ^ 2023-09-25T16:53:46,254 src/ViennaRNA/unstructured_domains.c:1367:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,255 1367 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T16:53:46,255 | ^ 2023-09-25T16:53:46,256 src/ViennaRNA/unstructured_domains.c:1394:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,257 1394 | for (m = 0; m < domains_up->uniq_motif_count; m++) 2023-09-25T16:53:46,257 | ^ 2023-09-25T16:53:46,258 src/ViennaRNA/unstructured_domains.c: In function ‘fill_MEA_matrix’: 2023-09-25T16:53:46,258 src/ViennaRNA/unstructured_domains.c:1451:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,259 1451 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:53:46,259 | ^ 2023-09-25T16:53:46,260 src/ViennaRNA/unstructured_domains.c:1466:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,260 1466 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:53:46,261 | ^ 2023-09-25T16:53:46,261 src/ViennaRNA/unstructured_domains.c: In function ‘backtrack_MEA_matrix’: 2023-09-25T16:53:46,261 src/ViennaRNA/unstructured_domains.c:1522:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,262 1522 | for (m = 0; m < domains_up->motif_count; m++) { 2023-09-25T16:53:46,262 | ^ 2023-09-25T16:53:46,263 src/ViennaRNA/unstructured_domains.c: In function ‘add_ligand_motif’: 2023-09-25T16:53:46,264 src/ViennaRNA/unstructured_domains.c:1600:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-25T16:53:46,264 1600 | for (same_size = i = 0; i < ud->uniq_motif_count; i++) { 2023-09-25T16:53:46,265 | ^ 2023-09-25T16:53:49,036 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2023-09-25T16:53:49,202 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2023-09-25T16:53:49,469 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAVE_CONFIG_H -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-19.24 -Isrc/cephes -Isrc/libsvm-3.31 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2023-09-25T16:53:49,484 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2023-09-25T16:53:49,495 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-25T16:53:49,609 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2023-09-25T16:53:49,623 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpfv687mkb[/] 2023-09-25T16:53:49,624 [bold magenta]cwd[/]: /tmp/pip-wheel-0twhjh4r/viennarna_156b95f34af342f1a930b72a565bbaf8 2023-09-25T16:53:49,624 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2023-09-25T16:53:49,627 ERROR: Failed building wheel for viennarna 2023-09-25T16:53:49,629 Failed to build viennarna 2023-09-25T16:53:49,630 ERROR: Failed to build one or more wheels 2023-09-25T16:53:49,631 Exception information: 2023-09-25T16:53:49,631 Traceback (most recent call last): 2023-09-25T16:53:49,631 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-25T16:53:49,631 status = run_func(*args) 2023-09-25T16:53:49,631 ^^^^^^^^^^^^^^^ 2023-09-25T16:53:49,631 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-25T16:53:49,631 return func(self, options, args) 2023-09-25T16:53:49,631 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-25T16:53:49,631 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-25T16:53:49,631 raise CommandError("Failed to build one or more wheels") 2023-09-25T16:53:49,631 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-25T16:53:49,636 Removed build tracker: '/tmp/pip-build-tracker-odzw0ri9'