2023-09-26T00:24:35,808 Created temporary directory: /tmp/pip-build-tracker-9kvrwcyr 2023-09-26T00:24:35,809 Initialized build tracking at /tmp/pip-build-tracker-9kvrwcyr 2023-09-26T00:24:35,810 Created build tracker: /tmp/pip-build-tracker-9kvrwcyr 2023-09-26T00:24:35,810 Entered build tracker: /tmp/pip-build-tracker-9kvrwcyr 2023-09-26T00:24:35,811 Created temporary directory: /tmp/pip-wheel-1edcewnx 2023-09-26T00:24:35,814 Created temporary directory: /tmp/pip-ephem-wheel-cache-24ckhq6v 2023-09-26T00:24:35,835 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T00:24:35,839 2 location(s) to search for versions of pyft: 2023-09-26T00:24:35,839 * https://pypi.org/simple/pyft/ 2023-09-26T00:24:35,839 * https://www.piwheels.org/simple/pyft/ 2023-09-26T00:24:35,840 Fetching project page and analyzing links: https://pypi.org/simple/pyft/ 2023-09-26T00:24:35,840 Getting page https://pypi.org/simple/pyft/ 2023-09-26T00:24:35,842 Found index url https://pypi.org/simple/ 2023-09-26T00:24:35,980 Fetched page https://pypi.org/simple/pyft/ as application/vnd.pypi.simple.v1+json 2023-09-26T00:24:35,985 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d7/62/f180b758be35243ef8a74361f533c974f7294541f16c9bc82cdcc29983e0/pyft-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,986 Found link https://files.pythonhosted.org/packages/c5/b3/4729bed033d7a353ec71381fa9e1ade1bf7a186a837ed3627b31265ddede/pyft-0.1.0.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.0 2023-09-26T00:24:35,987 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/cb/27/9e42da52a20d9b691ef37a8828764cd904af507b9107a386d55614566304/pyft-0.1.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,987 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/42/ec/1bf1615986fee7e2940dcd8902ef14457658d94208b01d95549253b62843/pyft-0.1.2-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,988 Found link https://files.pythonhosted.org/packages/0a/0b/139d65d937bc185b68d3eff484ce5c3ca5e3bfc3150b2020d0b604b64d66/pyft-0.1.2.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.2 2023-09-26T00:24:35,989 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/04/9b/b53f6e949dabc348f4bf60f9d11a473764e589d6041be074cbcf20a42900/pyft-0.1.3-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,990 Found link https://files.pythonhosted.org/packages/ab/26/5c78ed72341a5f6b18d9f84a1e9bc91739519c613d9051f732bf902f363d/pyft-0.1.3.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.3 2023-09-26T00:24:35,991 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/5f/76/cfcbbab37550bc51a7e8ea1bc59451ae618fb3eab2f20f7aa097bc615268/pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,992 Found link https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.4 2023-09-26T00:24:35,992 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b3/d8/e0bcc1d4dda64ccb39a697d7a2cf2f0afc1edddea2f97aa3b7351ada002d/pyft-0.1.5-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,993 Found link https://files.pythonhosted.org/packages/02/93/e6e05f3380af83b5c4b010925934d31dba5527b59d0f256aef8bd6b6b0d1/pyft-0.1.5.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.5 2023-09-26T00:24:35,994 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/7f/54/78d366d8c40d15e7e6ea673715003e9d3a1799bec389136fd3646cd2ee41/pyft-0.1.6-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,995 Found link https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.6 2023-09-26T00:24:35,996 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/ba/62/742233e64de296bde6230c31c8ac312c38ca40fa09f10cb36f8c3da3ba1b/pyft-0.1.7-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,996 Found link https://files.pythonhosted.org/packages/26/f9/bfc6b3b66cd901649cf13ea23361c69321e46ed3b1fe73981863371c14ea/pyft-0.1.7.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.7 2023-09-26T00:24:35,997 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/0b/b9/8bdacd074d2a6f38e3c2c3508cb1ddd1d1c00963e365f44c979bbd8c4df0/pyft-0.1.8-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,998 Found link https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.8 2023-09-26T00:24:35,998 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/aa/81/12871893127d02cf1d8ad68c808878816523e038fbd8fc69ef390b2d3069/pyft-0.1.9-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:24:35,999 Found link https://files.pythonhosted.org/packages/1e/7e/215d26ce7f6964e59e74252153d7c41d6ffa58f372bc2180bf9365f86a70/pyft-0.1.9.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.9 2023-09-26T00:24:36,000 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyft/ 2023-09-26T00:24:36,000 Getting page https://www.piwheels.org/simple/pyft/ 2023-09-26T00:24:36,002 Found index url https://www.piwheels.org/simple/ 2023-09-26T00:24:36,160 Fetched page https://www.piwheels.org/simple/pyft/ as text/html 2023-09-26T00:24:36,161 Skipping link: not a file: https://www.piwheels.org/simple/pyft/ 2023-09-26T00:24:36,162 Skipping link: not a file: https://pypi.org/simple/pyft/ 2023-09-26T00:24:36,180 Given no hashes to check 1 links for project 'pyft': discarding no candidates 2023-09-26T00:24:36,198 Collecting pyft==0.1.4 2023-09-26T00:24:36,200 Created temporary directory: /tmp/pip-unpack-o6nklq2e 2023-09-26T00:24:36,488 Downloading pyft-0.1.4.tar.gz (8.3 MB) 2023-09-26T00:24:38,869 Added pyft==0.1.4 from https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-9kvrwcyr' 2023-09-26T00:24:38,873 Created temporary directory: /tmp/pip-build-env-awajnm9z 2023-09-26T00:24:38,877 Installing build dependencies: started 2023-09-26T00:24:38,879 Running command pip subprocess to install build dependencies 2023-09-26T00:24:40,002 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-26T00:24:40,488 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T00:24:41,777 Collecting maturin<2.0,>=1.1 2023-09-26T00:24:41,778 Obtaining dependency information for maturin<2.0,>=1.1 from https://files.pythonhosted.org/packages/c1/22/4e716c0dfe799391176605ee4175c9dd1562dd057bb44f0358a365b6d8ce/maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata 2023-09-26T00:24:41,785 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata (18 kB) 2023-09-26T00:24:41,939 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl (9.2 MB) 2023-09-26T00:24:44,429 Installing collected packages: maturin 2023-09-26T00:24:45,145 Successfully installed maturin-1.2.3 2023-09-26T00:24:45,671 Installing build dependencies: finished with status 'done' 2023-09-26T00:24:45,674 Getting requirements to build wheel: started 2023-09-26T00:24:45,675 Running command Getting requirements to build wheel 2023-09-26T00:24:45,871 Getting requirements to build wheel: finished with status 'done' 2023-09-26T00:24:45,874 Created temporary directory: /tmp/pip-modern-metadata-4a4t6vbt 2023-09-26T00:24:45,876 Preparing metadata (pyproject.toml): started 2023-09-26T00:24:45,878 Running command Preparing metadata (pyproject.toml) 2023-09-26T00:24:46,504 Updating crates.io index 2023-09-26T00:24:49,504 Downloading crates ... 2023-09-26T00:24:51,954 Downloaded core_affinity v0.8.0 2023-09-26T00:24:51,986 Downloaded gzp v0.11.3 2023-09-26T00:24:52,233 Downloaded hts-sys v2.1.1 2023-09-26T00:24:53,581 Downloaded openssl-src v111.26.0+1.1.1u 2023-09-26T00:24:57,116 Downloaded libz-sys v1.1.9 2023-09-26T00:24:57,948 Downloaded curl-sys v0.4.63+curl-8.1.2 2023-09-26T00:25:02,486 Downloaded enum-map-derive v0.6.0 2023-09-26T00:25:02,495 Downloaded editdistancek v1.0.2 2023-09-26T00:25:02,511 Downloaded bytecount v0.6.3 2023-09-26T00:25:02,537 Downloaded indicatif v0.17.5 2023-09-26T00:25:02,599 Downloaded derive-new v0.5.9 2023-09-26T00:25:02,614 Downloaded custom_derive v0.1.7 2023-09-26T00:25:02,632 Downloaded ieee754 v0.2.6 2023-09-26T00:25:02,658 Downloaded console v0.15.7 2023-09-26T00:25:02,705 Downloaded nanorand v0.7.0 2023-09-26T00:25:02,747 Downloaded bio-types v1.0.0 2023-09-26T00:25:02,776 Downloaded enum-map v1.1.1 2023-09-26T00:25:02,795 Downloaded cmake v0.1.50 2023-09-26T00:25:02,814 Downloaded bv v0.11.1 2023-09-26T00:25:02,872 Downloaded flume v0.10.14 2023-09-26T00:25:02,935 Downloaded bio v1.3.1 2023-09-26T00:25:03,116 Downloaded bit-set v0.5.3 2023-09-26T00:25:03,140 Downloaded colored v2.0.4 2023-09-26T00:25:03,184 Downloaded wide v0.7.11 2023-09-26T00:25:03,268 Downloaded vec_map v0.8.2 2023-09-26T00:25:03,284 Downloaded triple_accel v0.4.0 2023-09-26T00:25:03,318 Downloaded strum v0.25.0 2023-09-26T00:25:03,329 Downloaded spin v0.9.8 2023-09-26T00:25:03,371 Downloaded serde_derive v1.0.172 2023-09-26T00:25:03,440 Downloaded serde v1.0.172 2023-09-26T00:25:03,494 Downloaded semver v0.1.20 2023-09-26T00:25:03,511 Downloaded safe_arch v0.7.1 2023-09-26T00:25:03,601 Downloaded rustversion v1.0.14 2023-09-26T00:25:03,647 Downloaded rustix v0.38.4 2023-09-26T00:25:04,072 Downloaded rustc_version v0.1.7 2023-09-26T00:25:04,084 Downloaded rust-htslib v0.44.1 2023-09-26T00:25:04,143 Downloaded quick-error v1.2.3 2023-09-26T00:25:04,163 Downloaded portable-atomic v1.4.1 2023-09-26T00:25:04,253 Downloaded ordered-float v3.7.0 2023-09-26T00:25:04,274 Downloaded niffler v2.5.0 2023-09-26T00:25:04,317 Downloaded newtype_derive v0.1.6 2023-09-26T00:25:04,333 Downloaded linear-map v1.2.0 2023-09-26T00:25:04,358 Downloaded libdeflater v0.12.0 2023-09-26T00:25:04,391 Downloaded libdeflate-sys v0.12.0 2023-09-26T00:25:04,539 Downloaded itertools-num v0.1.3 2023-09-26T00:25:04,558 Downloaded fs-utils v1.1.4 2023-09-26T00:25:04,571 Downloaded feature-probe v0.1.1 2023-09-26T00:25:04,671 🔗 Found pyo3 bindings 2023-09-26T00:25:04,988 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T00:25:04,989 📡 Using build options features from pyproject.toml 2023-09-26T00:25:04,999 pyft-0.1.4.dist-info 2023-09-26T00:25:05,000 Checking for Rust toolchain.... 2023-09-26T00:25:05,000 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-4a4t6vbt --interpreter /usr/bin/python3` 2023-09-26T00:25:05,023 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-26T00:25:05,027 Source in /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232 has version 0.1.4, which satisfies requirement pyft==0.1.4 from https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz 2023-09-26T00:25:05,028 Removed pyft==0.1.4 from https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-9kvrwcyr' 2023-09-26T00:25:05,033 Created temporary directory: /tmp/pip-unpack-b_3ss2ab 2023-09-26T00:25:05,034 Created temporary directory: /tmp/pip-unpack-j4igb2zm 2023-09-26T00:25:05,036 Building wheels for collected packages: pyft 2023-09-26T00:25:05,040 Created temporary directory: /tmp/pip-wheel-wycbgu6x 2023-09-26T00:25:05,041 Destination directory: /tmp/pip-wheel-wycbgu6x 2023-09-26T00:25:05,043 Building wheel for pyft (pyproject.toml): started 2023-09-26T00:25:05,044 Running command Building wheel for pyft (pyproject.toml) 2023-09-26T00:25:05,209 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2023-09-26T00:25:06,079 🔗 Found pyo3 bindings 2023-09-26T00:25:06,358 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T00:25:06,358 📡 Using build options features from pyproject.toml 2023-09-26T00:25:07,475 Compiling autocfg v1.1.0 2023-09-26T00:25:07,476 Compiling libc v0.2.147 2023-09-26T00:25:07,477 Compiling proc-macro2 v1.0.66 2023-09-26T00:25:07,477 Compiling unicode-ident v1.0.11 2023-09-26T00:25:10,592 Compiling cfg-if v1.0.0 2023-09-26T00:25:10,745 Compiling pkg-config v0.3.27 2023-09-26T00:25:16,323 Compiling quote v1.0.31 2023-09-26T00:25:19,523 Compiling jobserver v0.1.26 2023-09-26T00:25:19,746 Compiling syn v1.0.109 2023-09-26T00:25:21,609 Compiling cc v1.0.79 2023-09-26T00:25:23,281 Compiling syn v2.0.26 2023-09-26T00:25:30,731 Compiling libm v0.2.7 2023-09-26T00:25:33,554 Compiling num-traits v0.2.15 2023-09-26T00:25:34,777 Compiling memchr v2.5.0 2023-09-26T00:25:37,016 Compiling cmake v0.1.50 2023-09-26T00:25:41,140 Compiling libz-sys v1.1.9 2023-09-26T00:25:55,836 Compiling scopeguard v1.2.0 2023-09-26T00:25:57,231 Compiling getrandom v0.2.10 2023-09-26T00:25:59,000 Compiling openssl-src v111.26.0+1.1.1u 2023-09-26T00:26:00,757 Compiling target-lexicon v0.12.10 2023-09-26T00:26:05,011 Compiling openssl-sys v0.9.90 2023-09-26T00:26:08,987 Compiling aho-corasick v1.0.2 2023-09-26T00:26:14,022 Compiling thiserror v1.0.43 2023-09-26T00:26:15,998 Compiling lazy_static v1.4.0 2023-09-26T00:26:16,283 Compiling regex-syntax v0.7.4 2023-09-26T00:26:27,123 Compiling thiserror-impl v1.0.43 2023-09-26T00:26:38,608 Compiling regex-automata v0.3.3 2023-09-26T00:26:50,789 Compiling lock_api v0.4.10 2023-09-26T00:26:51,975 Compiling memoffset v0.9.0 2023-09-26T00:26:53,198 Compiling version_check v0.9.4 2023-09-26T00:26:55,967 Compiling semver v0.1.20 2023-09-26T00:26:58,668 Compiling rustversion v1.0.14 2023-09-26T00:27:00,990 Compiling crossbeam-utils v0.8.16 2023-09-26T00:27:02,906 Compiling rustc_version v0.1.7 2023-09-26T00:27:04,758 Compiling pyo3-build-config v0.19.1 2023-09-26T00:27:12,014 Compiling regex v1.9.1 2023-09-26T00:27:28,225 Compiling bzip2-sys v0.1.11+1.0.8 2023-09-26T00:27:30,058 Compiling curl-sys v0.4.63+curl-8.1.2 2023-09-26T00:27:33,136 Compiling lzma-sys v0.1.20 2023-09-26T00:27:35,632 Compiling num-integer v0.1.45 2023-09-26T00:27:36,685 Compiling quick-error v1.2.3 2023-09-26T00:27:36,940 Compiling serde v1.0.172 2023-09-26T00:27:38,696 Compiling tinyvec_macros v0.1.1 2023-09-26T00:27:38,868 Compiling tinyvec v1.6.0 2023-09-26T00:27:41,212 Compiling fs-utils v1.1.4 2023-09-26T00:28:13,583 Compiling newtype_derive v0.1.6 2023-09-26T00:28:27,828 Compiling serde_derive v1.0.172 2023-09-26T00:28:37,048 Compiling rand_core v0.6.4 2023-09-26T00:28:37,559 Compiling num_cpus v1.16.0 2023-09-26T00:28:38,859 Compiling crossbeam-epoch v0.9.15 2023-09-26T00:28:40,503 Compiling matrixmultiply v0.3.7 2023-09-26T00:28:41,652 Compiling byteorder v1.4.3 2023-09-26T00:28:44,086 Compiling crc32fast v1.3.2 2023-09-26T00:28:45,692 Compiling rustix v0.38.4 2023-09-26T00:28:46,854 Compiling glob v0.3.1 2023-09-26T00:28:47,893 Compiling heck v0.4.1 2023-09-26T00:28:49,312 Compiling paste v1.0.14 2023-09-26T00:28:50,616 Compiling ppv-lite86 v0.2.17 2023-09-26T00:28:50,951 Compiling bytemuck v1.13.1 2023-09-26T00:28:52,755 Compiling either v1.8.1 2023-09-26T00:28:53,856 Compiling once_cell v1.18.0 2023-09-26T00:28:54,155 Compiling rand_chacha v0.3.1 2023-09-26T00:29:00,761 Compiling safe_arch v0.7.1 2023-09-26T00:29:01,041 Compiling hts-sys v2.1.1 2023-09-26T00:29:03,677 Compiling strum_macros v0.24.3 2023-09-26T00:29:05,642 Compiling unicode-normalization v0.1.22 2023-09-26T00:29:16,828 Compiling proc-macro-error-attr v1.0.4 2023-09-26T00:29:18,000 Compiling derive-new v0.5.9 2023-09-26T00:29:22,921 Compiling num-complex v0.4.3 2023-09-26T00:29:23,672 Compiling libdeflate-sys v0.12.0 2023-09-26T00:29:25,367 Compiling num-rational v0.4.1 2023-09-26T00:29:26,662 Compiling percent-encoding v2.3.0 2023-09-26T00:29:28,328 Compiling rawpointer v0.2.1 2023-09-26T00:29:28,592 Compiling linux-raw-sys v0.4.3 2023-09-26T00:29:28,790 Compiling futures-core v0.3.28 2023-09-26T00:29:30,176 Compiling bitflags v2.3.3 2023-09-26T00:29:32,508 Compiling unicode-bidi v0.3.13 2023-09-26T00:29:36,765 Compiling typenum v1.16.0 2023-09-26T00:29:41,390 Compiling adler v1.0.2 2023-09-26T00:29:42,348 Compiling miniz_oxide v0.7.1 2023-09-26T00:29:49,237 Compiling idna v0.4.0 2023-09-26T00:30:04,145 Compiling form_urlencoded v1.2.0 2023-09-26T00:30:06,365 Compiling bio-types v1.0.0 2023-09-26T00:30:13,743 Compiling wide v0.7.11 2023-09-26T00:30:14,667 Compiling rand v0.8.5 2023-09-26T00:30:17,576 Compiling proc-macro-error v1.0.4 2023-09-26T00:30:18,768 Compiling pin-project-internal v1.1.2 2023-09-26T00:30:26,721 Compiling approx v0.5.1 2023-09-26T00:30:27,694 Compiling indexmap v1.9.3 2023-09-26T00:30:28,863 Compiling anyhow v1.0.72 2023-09-26T00:30:31,095 Compiling io-lifetimes v1.0.11 2023-09-26T00:30:32,992 Compiling rayon-core v1.11.0 2023-09-26T00:30:33,551 Compiling custom_derive v0.1.7 2023-09-26T00:30:33,750 Compiling log v0.4.19 2023-09-26T00:30:34,051 Compiling feature-probe v0.1.1 2023-09-26T00:30:35,014 Compiling bv v0.11.1 2023-09-26T00:30:36,244 Compiling pin-project v1.1.2 2023-09-26T00:30:36,541 Compiling simba v0.6.0 2023-09-26T00:30:37,119 Compiling rand_distr v0.4.3 2023-09-26T00:30:41,656 Compiling crossbeam-deque v0.8.3 2023-09-26T00:30:43,136 Compiling flate2 v1.0.26 2023-09-26T00:30:52,008 Compiling url v2.4.0 2023-09-26T00:31:06,512 Compiling is-terminal v0.4.9 2023-09-26T00:31:13,157 Compiling pyo3-ffi v0.19.1 2023-09-26T00:31:14,925 Compiling itertools v0.10.5 2023-09-26T00:31:20,046 Compiling crossbeam-channel v0.5.8 2023-09-26T00:31:28,509 Compiling spin v0.9.8 2023-09-26T00:31:30,253 Compiling nalgebra-macros v0.1.0 2023-09-26T00:31:33,502 Compiling nanorand v0.7.0 2023-09-26T00:31:35,077 Compiling ieee754 v0.2.6 2023-09-26T00:31:35,763 Compiling portable-atomic v1.4.1 2023-09-26T00:31:36,695 Compiling futures-sink v0.3.28 2023-09-26T00:31:36,995 Compiling parking_lot_core v0.9.8 2023-09-26T00:31:38,296 Compiling rustix v0.37.23 2023-09-26T00:31:39,454 Compiling hashbrown v0.12.3 2023-09-26T00:31:40,604 Compiling linear-map v1.2.0 2023-09-26T00:31:42,199 Compiling termcolor v1.2.0 2023-09-26T00:31:46,411 Compiling humantime v2.1.0 2023-09-26T00:31:50,963 Compiling flume v0.10.14 2023-09-26T00:31:54,936 Compiling nalgebra v0.29.0 2023-09-26T00:32:08,847 Compiling core_affinity v0.8.0 2023-09-26T00:32:09,580 Compiling enum-map-derive v0.6.0 2023-09-26T00:32:13,116 Compiling csv-core v0.1.10 2023-09-26T00:32:15,692 Compiling atty v0.2.14 2023-09-26T00:32:15,962 Compiling tempfile v3.6.0 2023-09-26T00:32:17,079 Compiling bytes v1.4.0 2023-09-26T00:32:17,088 Compiling ryu v1.0.15 2023-09-26T00:32:19,605 Compiling linux-raw-sys v0.3.8 2023-09-26T00:32:25,952 Compiling bitflags v1.3.2 2023-09-26T00:32:26,139 Compiling bit-vec v0.6.3 2023-09-26T00:32:28,189 Compiling smallvec v1.11.0 2023-09-26T00:32:30,207 Compiling itoa v1.0.9 2023-09-26T00:32:31,061 Compiling fixedbitset v0.4.2 2023-09-26T00:32:32,974 Compiling unicode-width v0.1.10 2023-09-26T00:32:33,365 Compiling console v0.15.7 2023-09-26T00:32:33,928 Compiling petgraph v0.6.3 2023-09-26T00:32:48,971 Compiling csv v1.2.2 2023-09-26T00:32:59,895 Compiling bit-set v0.5.3 2023-09-26T00:33:01,308 Compiling env_logger v0.9.3 2023-09-26T00:33:23,831 Compiling enum-map v1.1.1 2023-09-26T00:33:29,739 Compiling getset v0.1.2 2023-09-26T00:33:35,266 Compiling rayon v1.7.0 2023-09-26T00:33:42,021 Compiling colored v2.0.4 2023-09-26T00:33:46,675 Compiling statrs v0.16.0 2023-09-26T00:33:48,559 Compiling niffler v2.5.0 2023-09-26T00:34:04,219 Compiling ndarray v0.15.6 2023-09-26T00:34:06,103 Compiling multimap v0.8.3 2023-09-26T00:34:07,395 Compiling vec_map v0.8.2 2023-09-26T00:34:08,846 Compiling pyo3 v0.19.1 2023-09-26T00:34:10,106 Compiling fxhash v0.2.1 2023-09-26T00:34:10,983 Compiling pyo3-macros-backend v0.19.1 2023-09-26T00:34:18,688 Compiling ordered-float v3.7.0 2023-09-26T00:34:22,158 Compiling itertools-num v0.1.3 2023-09-26T00:34:22,538 Compiling strum v0.25.0 2023-09-26T00:34:22,925 Compiling fastrand v1.9.0 2023-09-26T00:34:25,471 Compiling bytecount v0.6.3 2023-09-26T00:34:26,345 Compiling number_prefix v0.4.0 2023-09-26T00:34:27,057 Compiling editdistancek v1.0.2 2023-09-26T00:34:28,122 Compiling triple_accel v0.4.0 2023-09-26T00:34:36,845 Compiling fibertools-rs v0.2.6 (/tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/local_dependencies/fibertools-rs) 2023-09-26T00:34:38,420 Compiling indicatif v0.17.5 2023-09-26T00:34:51,845 Compiling pyo3-macros v0.19.1 2023-09-26T00:34:53,344 Compiling bio v1.3.1 2023-09-26T00:35:06,938 Compiling parking_lot v0.12.1 2023-09-26T00:35:17,907 Compiling indoc v1.0.9 2023-09-26T00:35:18,489 Compiling anstyle v1.0.1 2023-09-26T00:35:21,000 Compiling unindent v0.1.11 2023-09-26T00:35:23,208 Compiling env_logger v0.10.0 2023-09-26T00:37:19,755 Compiling libdeflater v0.12.0 2023-09-26T00:37:21,757 Compiling gzp v0.11.3 2023-09-26T00:38:04,798 Compiling rust-htslib v0.44.1 2023-09-26T00:38:06,607 error[E0308]: mismatched types 2023-09-26T00:38:06,607 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:154:16 2023-09-26T00:38:06,608 | 2023-09-26T00:38:06,609 154 | l: sam_copy.len() as u64, 2023-09-26T00:38:06,609 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:06,616 error[E0308]: mismatched types 2023-09-26T00:38:06,617 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:155:16 2023-09-26T00:38:06,617 | 2023-09-26T00:38:06,618 155 | m: sam_copy.len() as u64, 2023-09-26T00:38:06,619 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,011 error[E0308]: mismatched types 2023-09-26T00:38:07,012 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:2324:17 2023-09-26T00:38:07,013 | 2023-09-26T00:38:07,014 2319 | let ret = hts_sys::bam_mods_query_type( 2023-09-26T00:38:07,014 | ---------------------------- arguments to this function are incorrect 2023-09-26T00:38:07,015 ... 2023-09-26T00:38:07,016 2324 | &mut canonical, 2023-09-26T00:38:07,017 | ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8` 2023-09-26T00:38:07,018 | 2023-09-26T00:38:07,018 = note: expected raw pointer `*mut u8` 2023-09-26T00:38:07,019 found mutable reference `&mut i8` 2023-09-26T00:38:07,019 note: function defined here 2023-09-26T00:38:07,020 --> /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:9439:12 2023-09-26T00:38:07,020 | 2023-09-26T00:38:07,021 9439 | pub fn bam_mods_query_type( 2023-09-26T00:38:07,021 | ^^^^^^^^^^^^^^^^^^^ 2023-09-26T00:38:07,194 error[E0308]: mismatched types 2023-09-26T00:38:07,194 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1128:29 2023-09-26T00:38:07,195 | 2023-09-26T00:38:07,196 1128 | (*rec).l_text = l_text as u64; 2023-09-26T00:38:07,196 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,197 | | 2023-09-26T00:38:07,197 | expected due to the type of this binding 2023-09-26T00:38:07,237 error[E0308]: mismatched types 2023-09-26T00:38:07,237 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1393:45 2023-09-26T00:38:07,238 | 2023-09-26T00:38:07,238 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2023-09-26T00:38:07,239 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,240 | | 2023-09-26T00:38:07,240 | arguments to this function are incorrect 2023-09-26T00:38:07,241 | 2023-09-26T00:38:07,242 note: function defined here 2023-09-26T00:38:07,243 --> /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:8520:12 2023-09-26T00:38:07,243 | 2023-09-26T00:38:07,244 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2023-09-26T00:38:07,245 | ^^^^^^^^^^^^^ 2023-09-26T00:38:07,245 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:38:07,246 | 2023-09-26T00:38:07,247 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2023-09-26T00:38:07,247 | + +++++++++++++++++++++ 2023-09-26T00:38:07,249 error[E0308]: mismatched types 2023-09-26T00:38:07,250 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1395:29 2023-09-26T00:38:07,251 | 2023-09-26T00:38:07,252 1395 | (*rec).l_text = l_text as u64; 2023-09-26T00:38:07,252 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,253 | | 2023-09-26T00:38:07,254 | expected due to the type of this binding 2023-09-26T00:38:07,497 error[E0308]: mismatched types 2023-09-26T00:38:07,498 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bcf/record.rs:1011:48 2023-09-26T00:38:07,499 | 2023-09-26T00:38:07,500 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2023-09-26T00:38:07,500 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,501 | | 2023-09-26T00:38:07,502 | arguments to this function are incorrect 2023-09-26T00:38:07,503 | 2023-09-26T00:38:07,504 note: function defined here 2023-09-26T00:38:07,504 --> /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:11642:12 2023-09-26T00:38:07,505 | 2023-09-26T00:38:07,506 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2023-09-26T00:38:07,506 | ^^^^^^^^ 2023-09-26T00:38:07,507 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:38:07,507 | 2023-09-26T00:38:07,508 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2023-09-26T00:38:07,508 | + +++++++++++++++++++++ 2023-09-26T00:38:07,734 error[E0308]: mismatched types 2023-09-26T00:38:07,734 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:118:17 2023-09-26T00:38:07,735 | 2023-09-26T00:38:07,736 115 | htslib::bgzf_read( 2023-09-26T00:38:07,736 | ----------------- arguments to this function are incorrect 2023-09-26T00:38:07,737 ... 2023-09-26T00:38:07,737 118 | buf.len() as u64, 2023-09-26T00:38:07,738 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,738 | 2023-09-26T00:38:07,739 note: function defined here 2023-09-26T00:38:07,739 --> /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10097:12 2023-09-26T00:38:07,740 | 2023-09-26T00:38:07,741 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2023-09-26T00:38:07,741 | ^^^^^^^^^ 2023-09-26T00:38:07,742 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:38:07,743 | 2023-09-26T00:38:07,744 118 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T00:38:07,745 | + +++++++++++++++++++++ 2023-09-26T00:38:07,768 error[E0308]: mismatched types 2023-09-26T00:38:07,769 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:264:17 2023-09-26T00:38:07,769 | 2023-09-26T00:38:07,770 261 | htslib::bgzf_write( 2023-09-26T00:38:07,771 | ------------------ arguments to this function are incorrect 2023-09-26T00:38:07,772 ... 2023-09-26T00:38:07,773 264 | buf.len() as u64, 2023-09-26T00:38:07,773 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:38:07,774 | 2023-09-26T00:38:07,775 note: function defined here 2023-09-26T00:38:07,776 --> /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10100:12 2023-09-26T00:38:07,776 | 2023-09-26T00:38:07,777 10100 | pub fn bgzf_write( 2023-09-26T00:38:07,778 | ^^^^^^^^^^ 2023-09-26T00:38:07,778 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:38:07,779 | 2023-09-26T00:38:07,780 264 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T00:38:07,780 | + +++++++++++++++++++++ 2023-09-26T00:38:07,949 For more information about this error, try `rustc --explain E0308`. 2023-09-26T00:38:07,967 error: could not compile `rust-htslib` (lib) due to 9 previous errors 2023-09-26T00:38:07,990 💥 maturin failed 2023-09-26T00:38:07,990 Caused by: Failed to build a native library through cargo 2023-09-26T00:38:07,991 Caused by: Cargo build finished with "exit status: 101": `"cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232/Cargo.toml" "--release" "--lib"` 2023-09-26T00:38:07,992 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2023-09-26T00:38:08,015 ERROR: [present-rich] Building wheel for pyft (pyproject.toml) exited with 1 2023-09-26T00:38:08,028 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpa2u3hs8w[/] 2023-09-26T00:38:08,029 [bold magenta]cwd[/]: /tmp/pip-wheel-1edcewnx/pyft_6b5669c338b24cbc8c1650956bb6d232 2023-09-26T00:38:08,029 Building wheel for pyft (pyproject.toml): finished with status 'error' 2023-09-26T00:38:08,031 ERROR: Failed building wheel for pyft 2023-09-26T00:38:08,034 Failed to build pyft 2023-09-26T00:38:08,035 ERROR: Failed to build one or more wheels 2023-09-26T00:38:08,036 Exception information: 2023-09-26T00:38:08,036 Traceback (most recent call last): 2023-09-26T00:38:08,036 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-26T00:38:08,036 status = run_func(*args) 2023-09-26T00:38:08,036 ^^^^^^^^^^^^^^^ 2023-09-26T00:38:08,036 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-26T00:38:08,036 return func(self, options, args) 2023-09-26T00:38:08,036 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-26T00:38:08,036 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-26T00:38:08,036 raise CommandError("Failed to build one or more wheels") 2023-09-26T00:38:08,036 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-26T00:38:08,040 Removed build tracker: '/tmp/pip-build-tracker-9kvrwcyr'