2023-09-26T00:40:48,235 Created temporary directory: /tmp/pip-build-tracker-h4iu835u 2023-09-26T00:40:48,236 Initialized build tracking at /tmp/pip-build-tracker-h4iu835u 2023-09-26T00:40:48,237 Created build tracker: /tmp/pip-build-tracker-h4iu835u 2023-09-26T00:40:48,237 Entered build tracker: /tmp/pip-build-tracker-h4iu835u 2023-09-26T00:40:48,238 Created temporary directory: /tmp/pip-wheel-6mrii5nz 2023-09-26T00:40:48,241 Created temporary directory: /tmp/pip-ephem-wheel-cache-8x0mx_w7 2023-09-26T00:40:48,263 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T00:40:48,266 2 location(s) to search for versions of pyft: 2023-09-26T00:40:48,266 * https://pypi.org/simple/pyft/ 2023-09-26T00:40:48,266 * https://www.piwheels.org/simple/pyft/ 2023-09-26T00:40:48,267 Fetching project page and analyzing links: https://pypi.org/simple/pyft/ 2023-09-26T00:40:48,268 Getting page https://pypi.org/simple/pyft/ 2023-09-26T00:40:48,270 Found index url https://pypi.org/simple/ 2023-09-26T00:40:48,413 Fetched page https://pypi.org/simple/pyft/ as application/vnd.pypi.simple.v1+json 2023-09-26T00:40:48,418 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d7/62/f180b758be35243ef8a74361f533c974f7294541f16c9bc82cdcc29983e0/pyft-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,419 Found link https://files.pythonhosted.org/packages/c5/b3/4729bed033d7a353ec71381fa9e1ade1bf7a186a837ed3627b31265ddede/pyft-0.1.0.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.0 2023-09-26T00:40:48,419 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/cb/27/9e42da52a20d9b691ef37a8828764cd904af507b9107a386d55614566304/pyft-0.1.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,420 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/42/ec/1bf1615986fee7e2940dcd8902ef14457658d94208b01d95549253b62843/pyft-0.1.2-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,421 Found link https://files.pythonhosted.org/packages/0a/0b/139d65d937bc185b68d3eff484ce5c3ca5e3bfc3150b2020d0b604b64d66/pyft-0.1.2.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.2 2023-09-26T00:40:48,422 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/04/9b/b53f6e949dabc348f4bf60f9d11a473764e589d6041be074cbcf20a42900/pyft-0.1.3-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,423 Found link https://files.pythonhosted.org/packages/ab/26/5c78ed72341a5f6b18d9f84a1e9bc91739519c613d9051f732bf902f363d/pyft-0.1.3.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.3 2023-09-26T00:40:48,424 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/5f/76/cfcbbab37550bc51a7e8ea1bc59451ae618fb3eab2f20f7aa097bc615268/pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,425 Found link https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.4 2023-09-26T00:40:48,426 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b3/d8/e0bcc1d4dda64ccb39a697d7a2cf2f0afc1edddea2f97aa3b7351ada002d/pyft-0.1.5-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,427 Found link https://files.pythonhosted.org/packages/02/93/e6e05f3380af83b5c4b010925934d31dba5527b59d0f256aef8bd6b6b0d1/pyft-0.1.5.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.5 2023-09-26T00:40:48,427 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/7f/54/78d366d8c40d15e7e6ea673715003e9d3a1799bec389136fd3646cd2ee41/pyft-0.1.6-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,428 Found link https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.6 2023-09-26T00:40:48,429 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/ba/62/742233e64de296bde6230c31c8ac312c38ca40fa09f10cb36f8c3da3ba1b/pyft-0.1.7-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,430 Found link https://files.pythonhosted.org/packages/26/f9/bfc6b3b66cd901649cf13ea23361c69321e46ed3b1fe73981863371c14ea/pyft-0.1.7.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.7 2023-09-26T00:40:48,431 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/0b/b9/8bdacd074d2a6f38e3c2c3508cb1ddd1d1c00963e365f44c979bbd8c4df0/pyft-0.1.8-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,432 Found link https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.8 2023-09-26T00:40:48,432 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/aa/81/12871893127d02cf1d8ad68c808878816523e038fbd8fc69ef390b2d3069/pyft-0.1.9-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T00:40:48,433 Found link https://files.pythonhosted.org/packages/1e/7e/215d26ce7f6964e59e74252153d7c41d6ffa58f372bc2180bf9365f86a70/pyft-0.1.9.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.9 2023-09-26T00:40:48,434 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyft/ 2023-09-26T00:40:48,435 Getting page https://www.piwheels.org/simple/pyft/ 2023-09-26T00:40:48,436 Found index url https://www.piwheels.org/simple/ 2023-09-26T00:40:48,597 Fetched page https://www.piwheels.org/simple/pyft/ as text/html 2023-09-26T00:40:48,598 Skipping link: not a file: https://www.piwheels.org/simple/pyft/ 2023-09-26T00:40:48,598 Skipping link: not a file: https://pypi.org/simple/pyft/ 2023-09-26T00:40:48,618 Given no hashes to check 1 links for project 'pyft': discarding no candidates 2023-09-26T00:40:48,635 Collecting pyft==0.1.6 2023-09-26T00:40:48,638 Created temporary directory: /tmp/pip-unpack-a9xkhztd 2023-09-26T00:40:49,116 Downloading pyft-0.1.6.tar.gz (8.3 MB) 2023-09-26T00:40:51,915 Added pyft==0.1.6 from https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-h4iu835u' 2023-09-26T00:40:51,919 Created temporary directory: /tmp/pip-build-env-5z6qgnab 2023-09-26T00:40:51,924 Installing build dependencies: started 2023-09-26T00:40:51,925 Running command pip subprocess to install build dependencies 2023-09-26T00:40:53,132 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-26T00:40:53,642 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T00:40:54,949 Collecting maturin<2.0,>=1.1 2023-09-26T00:40:54,950 Obtaining dependency information for maturin<2.0,>=1.1 from https://files.pythonhosted.org/packages/c1/22/4e716c0dfe799391176605ee4175c9dd1562dd057bb44f0358a365b6d8ce/maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata 2023-09-26T00:40:54,956 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata (18 kB) 2023-09-26T00:40:55,113 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl (9.2 MB) 2023-09-26T00:40:57,618 Installing collected packages: maturin 2023-09-26T00:40:58,320 Successfully installed maturin-1.2.3 2023-09-26T00:40:59,940 Installing build dependencies: finished with status 'done' 2023-09-26T00:40:59,943 Getting requirements to build wheel: started 2023-09-26T00:40:59,944 Running command Getting requirements to build wheel 2023-09-26T00:41:00,142 Getting requirements to build wheel: finished with status 'done' 2023-09-26T00:41:00,145 Created temporary directory: /tmp/pip-modern-metadata-0ulkegrb 2023-09-26T00:41:00,147 Preparing metadata (pyproject.toml): started 2023-09-26T00:41:00,149 Running command Preparing metadata (pyproject.toml) 2023-09-26T00:41:00,809 Updating crates.io index 2023-09-26T00:41:03,812 Downloading crates ... 2023-09-26T00:41:06,060 Downloaded enum-map-derive v0.6.0 2023-09-26T00:41:06,120 Downloaded gzp v0.11.3 2023-09-26T00:41:06,361 Downloaded hts-sys v2.1.1 2023-09-26T00:41:07,647 Downloaded openssl-src v111.26.0+1.1.1u 2023-09-26T00:41:11,179 Downloaded curl-sys v0.4.63+curl-8.1.2 2023-09-26T00:41:17,122 Downloaded csv v1.2.2 2023-09-26T00:41:17,399 Downloaded core_affinity v0.8.0 2023-09-26T00:41:17,415 Downloaded anyhow v1.0.72 2023-09-26T00:41:17,480 Downloaded bio v1.3.1 2023-09-26T00:41:17,622 Downloaded bzip2-sys v0.1.11+1.0.8 2023-09-26T00:41:17,778 Downloaded libdeflater v0.12.0 2023-09-26T00:41:17,813 Downloaded bv v0.11.1 2023-09-26T00:41:17,870 Downloaded bio-types v1.0.0 2023-09-26T00:41:17,906 Downloaded derive-new v0.5.9 2023-09-26T00:41:17,926 Downloaded rustversion v1.0.14 2023-09-26T00:41:17,981 Downloaded lzma-sys v0.1.20 2023-09-26T00:41:18,519 Downloaded enum-map v1.1.1 2023-09-26T00:41:18,537 Downloaded console v0.15.7 2023-09-26T00:41:18,584 Downloaded custom_derive v0.1.7 2023-09-26T00:41:18,602 Downloaded libdeflate-sys v0.12.0 2023-09-26T00:41:18,771 Downloaded itertools-num v0.1.3 2023-09-26T00:41:18,791 Downloaded feature-probe v0.1.1 2023-09-26T00:41:18,806 Downloaded env_logger v0.9.3 2023-09-26T00:41:18,845 Downloaded semver v0.1.20 2023-09-26T00:41:18,862 Downloaded ieee754 v0.2.6 2023-09-26T00:41:18,888 Downloaded ordered-float v3.7.0 2023-09-26T00:41:18,907 Downloaded triple_accel v0.4.0 2023-09-26T00:41:18,938 Downloaded thiserror-impl v1.0.43 2023-09-26T00:41:18,958 Downloaded thiserror v1.0.43 2023-09-26T00:41:19,031 Downloaded target-lexicon v0.12.10 2023-09-26T00:41:19,062 Downloaded serde_derive v1.0.172 2023-09-26T00:41:19,127 Downloaded serde v1.0.172 2023-09-26T00:41:19,178 Downloaded rustc_version v0.1.7 2023-09-26T00:41:19,190 Downloaded rust-htslib v0.44.1 2023-09-26T00:41:19,255 Downloaded portable-atomic v1.4.1 2023-09-26T00:41:19,348 Downloaded openssl-sys v0.9.90 2023-09-26T00:41:19,441 Downloaded number_prefix v0.4.0 2023-09-26T00:41:19,457 Downloaded niffler v2.5.0 2023-09-26T00:41:19,503 Downloaded newtype_derive v0.1.6 2023-09-26T00:41:19,523 Downloaded multimap v0.8.3 2023-09-26T00:41:19,539 Downloaded linear-map v1.2.0 2023-09-26T00:41:19,563 Downloaded indicatif v0.17.5 2023-09-26T00:41:19,629 Downloaded fs-utils v1.1.4 2023-09-26T00:41:19,641 Downloaded encode_unicode v0.3.6 2023-09-26T00:41:19,677 Downloaded editdistancek v1.0.2 2023-09-26T00:41:19,694 Downloaded csv-core v0.1.10 2023-09-26T00:41:19,800 🔗 Found pyo3 bindings 2023-09-26T00:41:20,076 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T00:41:20,077 📡 Using build options features from pyproject.toml 2023-09-26T00:41:20,087 pyft-0.1.6.dist-info 2023-09-26T00:41:20,088 Checking for Rust toolchain.... 2023-09-26T00:41:20,089 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-0ulkegrb --interpreter /usr/bin/python3` 2023-09-26T00:41:20,111 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-26T00:41:20,116 Source in /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b has version 0.1.6, which satisfies requirement pyft==0.1.6 from https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz 2023-09-26T00:41:20,117 Removed pyft==0.1.6 from https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-h4iu835u' 2023-09-26T00:41:20,122 Created temporary directory: /tmp/pip-unpack-x0hgfter 2023-09-26T00:41:20,123 Created temporary directory: /tmp/pip-unpack-yebfylgb 2023-09-26T00:41:20,125 Building wheels for collected packages: pyft 2023-09-26T00:41:20,129 Created temporary directory: /tmp/pip-wheel-arisos9u 2023-09-26T00:41:20,130 Destination directory: /tmp/pip-wheel-arisos9u 2023-09-26T00:41:20,132 Building wheel for pyft (pyproject.toml): started 2023-09-26T00:41:20,133 Running command Building wheel for pyft (pyproject.toml) 2023-09-26T00:41:20,342 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2023-09-26T00:41:21,228 🔗 Found pyo3 bindings 2023-09-26T00:41:21,509 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T00:41:21,510 📡 Using build options features from pyproject.toml 2023-09-26T00:41:22,660 Compiling autocfg v1.1.0 2023-09-26T00:41:22,660 Compiling libc v0.2.147 2023-09-26T00:41:22,661 Compiling proc-macro2 v1.0.66 2023-09-26T00:41:22,662 Compiling unicode-ident v1.0.11 2023-09-26T00:41:25,596 Compiling cfg-if v1.0.0 2023-09-26T00:41:25,776 Compiling pkg-config v0.3.27 2023-09-26T00:41:30,834 Compiling quote v1.0.31 2023-09-26T00:41:32,475 Compiling syn v1.0.109 2023-09-26T00:41:33,868 Compiling jobserver v0.1.26 2023-09-26T00:41:34,490 Compiling syn v2.0.26 2023-09-26T00:41:36,957 Compiling cc v1.0.79 2023-09-26T00:41:48,564 Compiling libm v0.2.7 2023-09-26T00:41:49,013 Compiling num-traits v0.2.15 2023-09-26T00:41:49,917 Compiling memchr v2.5.0 2023-09-26T00:41:51,665 Compiling cmake v0.1.50 2023-09-26T00:41:55,314 Compiling libz-sys v1.1.9 2023-09-26T00:42:10,515 Compiling scopeguard v1.2.0 2023-09-26T00:42:13,142 Compiling getrandom v0.2.10 2023-09-26T00:42:14,822 Compiling openssl-src v111.26.0+1.1.1u 2023-09-26T00:42:16,766 Compiling target-lexicon v0.12.10 2023-09-26T00:42:21,880 Compiling openssl-sys v0.9.90 2023-09-26T00:42:25,709 Compiling aho-corasick v1.0.2 2023-09-26T00:42:27,405 Compiling lazy_static v1.4.0 2023-09-26T00:42:27,719 Compiling thiserror v1.0.43 2023-09-26T00:42:29,660 Compiling regex-syntax v0.7.4 2023-09-26T00:42:39,734 Compiling thiserror-impl v1.0.43 2023-09-26T00:42:54,031 Compiling regex-automata v0.3.3 2023-09-26T00:43:08,919 Compiling memoffset v0.9.0 2023-09-26T00:43:10,093 Compiling lock_api v0.4.10 2023-09-26T00:43:11,222 Compiling version_check v0.9.4 2023-09-26T00:43:13,947 Compiling crossbeam-utils v0.8.16 2023-09-26T00:43:15,715 Compiling rustversion v1.0.14 2023-09-26T00:43:18,110 Compiling semver v0.1.20 2023-09-26T00:43:20,799 Compiling rustc_version v0.1.7 2023-09-26T00:43:22,189 Compiling regex v1.9.1 2023-09-26T00:43:39,054 Compiling pyo3-build-config v0.19.1 2023-09-26T00:43:46,959 Compiling curl-sys v0.4.63+curl-8.1.2 2023-09-26T00:43:50,147 Compiling lzma-sys v0.1.20 2023-09-26T00:43:52,746 Compiling bzip2-sys v0.1.11+1.0.8 2023-09-26T00:43:54,511 Compiling num-integer v0.1.45 2023-09-26T00:43:54,935 Compiling quick-error v1.2.3 2023-09-26T00:43:55,201 Compiling serde v1.0.172 2023-09-26T00:43:55,876 Compiling tinyvec_macros v0.1.1 2023-09-26T00:43:56,035 Compiling tinyvec v1.6.0 2023-09-26T00:43:57,081 Compiling fs-utils v1.1.4 2023-09-26T00:44:11,850 Compiling newtype_derive v0.1.6 2023-09-26T00:44:12,755 Compiling serde_derive v1.0.172 2023-09-26T00:44:13,007 Compiling rand_core v0.6.4 2023-09-26T00:44:15,061 Compiling num_cpus v1.16.0 2023-09-26T00:44:23,732 Compiling crossbeam-epoch v0.9.15 2023-09-26T00:44:25,343 Compiling matrixmultiply v0.3.7 2023-09-26T00:44:26,603 Compiling paste v1.0.14 2023-09-26T00:44:28,243 Compiling once_cell v1.18.0 2023-09-26T00:44:29,864 Compiling bytemuck v1.13.1 2023-09-26T00:44:31,698 Compiling rustix v0.38.4 2023-09-26T00:44:34,003 Compiling ppv-lite86 v0.2.17 2023-09-26T00:44:36,995 Compiling crc32fast v1.3.2 2023-09-26T00:44:38,635 Compiling byteorder v1.4.3 2023-09-26T00:44:41,172 Compiling heck v0.4.1 2023-09-26T00:44:42,706 Compiling either v1.8.1 2023-09-26T00:44:44,132 Compiling glob v0.3.1 2023-09-26T00:44:47,831 Compiling hts-sys v2.1.1 2023-09-26T00:44:50,609 Compiling strum_macros v0.24.3 2023-09-26T00:45:09,908 Compiling rand_chacha v0.3.1 2023-09-26T00:45:16,946 Compiling safe_arch v0.7.1 2023-09-26T00:45:26,973 Compiling unicode-normalization v0.1.22 2023-09-26T00:45:37,712 Compiling proc-macro-error-attr v1.0.4 2023-09-26T00:45:38,886 Compiling derive-new v0.5.9 2023-09-26T00:45:40,380 Compiling num-complex v0.4.3 2023-09-26T00:45:41,166 Compiling libdeflate-sys v0.12.0 2023-09-26T00:45:42,913 Compiling num-rational v0.4.1 2023-09-26T00:45:44,106 Compiling futures-core v0.3.28 2023-09-26T00:45:44,613 Compiling adler v1.0.2 2023-09-26T00:45:45,305 Compiling percent-encoding v2.3.0 2023-09-26T00:45:45,632 Compiling rawpointer v0.2.1 2023-09-26T00:45:45,882 Compiling typenum v1.16.0 2023-09-26T00:45:46,176 Compiling bitflags v2.3.3 2023-09-26T00:45:47,366 Compiling unicode-bidi v0.3.13 2023-09-26T00:45:48,441 Compiling linux-raw-sys v0.4.3 2023-09-26T00:45:50,750 Compiling idna v0.4.0 2023-09-26T00:46:04,412 Compiling form_urlencoded v1.2.0 2023-09-26T00:46:07,258 Compiling miniz_oxide v0.7.1 2023-09-26T00:46:11,083 Compiling bio-types v1.0.0 2023-09-26T00:46:24,136 Compiling wide v0.7.11 2023-09-26T00:46:25,412 Compiling rand v0.8.5 2023-09-26T00:46:27,736 Compiling proc-macro-error v1.0.4 2023-09-26T00:46:28,861 Compiling pin-project-internal v1.1.2 2023-09-26T00:46:38,076 Compiling approx v0.5.1 2023-09-26T00:46:39,072 Compiling indexmap v1.9.3 2023-09-26T00:46:40,222 Compiling io-lifetimes v1.0.11 2023-09-26T00:46:42,325 Compiling log v0.4.19 2023-09-26T00:46:43,483 Compiling custom_derive v0.1.7 2023-09-26T00:46:43,667 Compiling feature-probe v0.1.1 2023-09-26T00:46:44,619 Compiling anyhow v1.0.72 2023-09-26T00:46:45,094 Compiling rayon-core v1.11.0 2023-09-26T00:46:46,327 Compiling simba v0.6.0 2023-09-26T00:46:46,937 Compiling bv v0.11.1 2023-09-26T00:46:47,968 Compiling pin-project v1.1.2 2023-09-26T00:46:48,622 Compiling rand_distr v0.4.3 2023-09-26T00:46:53,306 Compiling flate2 v1.0.26 2023-09-26T00:46:55,113 Compiling crossbeam-deque v0.8.3 2023-09-26T00:47:01,071 Compiling url v2.4.0 2023-09-26T00:47:15,075 Compiling is-terminal v0.4.9 2023-09-26T00:47:21,675 Compiling pyo3-ffi v0.19.1 2023-09-26T00:47:23,507 Compiling itertools v0.10.5 2023-09-26T00:47:28,315 Compiling crossbeam-channel v0.5.8 2023-09-26T00:47:36,791 Compiling spin v0.9.8 2023-09-26T00:47:38,528 Compiling nalgebra-macros v0.1.0 2023-09-26T00:47:42,101 Compiling nanorand v0.7.0 2023-09-26T00:47:43,579 Compiling rustix v0.37.23 2023-09-26T00:47:45,276 Compiling hashbrown v0.12.3 2023-09-26T00:47:45,924 Compiling humantime v2.1.0 2023-09-26T00:47:49,668 Compiling linear-map v1.2.0 2023-09-26T00:47:51,320 Compiling parking_lot_core v0.9.8 2023-09-26T00:47:51,991 Compiling futures-sink v0.3.28 2023-09-26T00:47:52,321 Compiling ieee754 v0.2.6 2023-09-26T00:47:52,734 Compiling portable-atomic v1.4.1 2023-09-26T00:47:53,009 Compiling termcolor v1.2.0 2023-09-26T00:47:56,564 Compiling flume v0.10.14 2023-09-26T00:48:12,532 Compiling nalgebra v0.29.0 2023-09-26T00:48:18,249 Compiling core_affinity v0.8.0 2023-09-26T00:48:19,054 Compiling enum-map-derive v0.6.0 2023-09-26T00:48:22,624 Compiling csv-core v0.1.10 2023-09-26T00:48:23,809 Compiling atty v0.2.14 2023-09-26T00:48:24,105 Compiling tempfile v3.6.0 2023-09-26T00:48:25,275 Compiling bytes v1.4.0 2023-09-26T00:48:26,920 Compiling smallvec v1.11.0 2023-09-26T00:48:28,964 Compiling unicode-width v0.1.10 2023-09-26T00:48:29,362 Compiling linux-raw-sys v0.3.8 2023-09-26T00:48:34,035 Compiling fixedbitset v0.4.2 2023-09-26T00:48:37,130 Compiling itoa v1.0.9 2023-09-26T00:48:37,921 Compiling bit-vec v0.6.3 2023-09-26T00:48:39,962 Compiling bitflags v1.3.2 2023-09-26T00:48:40,152 Compiling ryu v1.0.15 2023-09-26T00:48:42,411 Compiling csv v1.2.2 2023-09-26T00:48:53,460 Compiling bit-set v0.5.3 2023-09-26T00:48:54,523 Compiling petgraph v0.6.3 2023-09-26T00:49:13,287 Compiling console v0.15.7 2023-09-26T00:49:20,859 Compiling env_logger v0.9.3 2023-09-26T00:49:28,800 Compiling enum-map v1.1.1 2023-09-26T00:49:41,214 Compiling getset v0.1.2 2023-09-26T00:49:43,163 Compiling rayon v1.7.0 2023-09-26T00:49:52,780 Compiling colored v2.0.4 2023-09-26T00:49:58,681 Compiling niffler v2.5.0 2023-09-26T00:50:01,335 Compiling statrs v0.16.0 2023-09-26T00:50:13,885 Compiling ndarray v0.15.6 2023-09-26T00:50:14,407 Compiling multimap v0.8.3 2023-09-26T00:50:15,773 Compiling vec_map v0.8.2 2023-09-26T00:50:17,352 Compiling pyo3 v0.19.1 2023-09-26T00:50:18,815 Compiling fxhash v0.2.1 2023-09-26T00:50:19,453 Compiling itertools-num v0.1.3 2023-09-26T00:50:19,890 Compiling ordered-float v3.7.0 2023-09-26T00:50:23,419 Compiling pyo3-macros-backend v0.19.1 2023-09-26T00:50:32,931 Compiling fibertools-rs v0.2.6 (/tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/local_dependencies/fibertools-rs) 2023-09-26T00:50:34,494 Compiling strum v0.25.0 2023-09-26T00:50:34,869 Compiling triple_accel v0.4.0 2023-09-26T00:50:43,704 Compiling bytecount v0.6.3 2023-09-26T00:50:44,584 Compiling fastrand v1.9.0 2023-09-26T00:50:47,226 Compiling editdistancek v1.0.2 2023-09-26T00:50:48,261 Compiling number_prefix v0.4.0 2023-09-26T00:50:49,014 Compiling indicatif v0.17.5 2023-09-26T00:51:03,709 Compiling bio v1.3.1 2023-09-26T00:51:04,189 Compiling pyo3-macros v0.19.1 2023-09-26T00:51:20,362 Compiling parking_lot v0.12.1 2023-09-26T00:51:29,352 Compiling indoc v1.0.9 2023-09-26T00:51:32,084 Compiling unindent v0.1.11 2023-09-26T00:51:33,522 Compiling anstyle v1.0.1 2023-09-26T00:51:35,900 Compiling env_logger v0.10.0 2023-09-26T00:53:10,969 Compiling libdeflater v0.12.0 2023-09-26T00:53:11,906 Compiling gzp v0.11.3 2023-09-26T00:54:25,170 Compiling rust-htslib v0.44.1 2023-09-26T00:54:27,027 error[E0308]: mismatched types 2023-09-26T00:54:27,028 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:154:16 2023-09-26T00:54:27,029 | 2023-09-26T00:54:27,029 154 | l: sam_copy.len() as u64, 2023-09-26T00:54:27,030 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,037 error[E0308]: mismatched types 2023-09-26T00:54:27,038 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:155:16 2023-09-26T00:54:27,039 | 2023-09-26T00:54:27,039 155 | m: sam_copy.len() as u64, 2023-09-26T00:54:27,040 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,439 error[E0308]: mismatched types 2023-09-26T00:54:27,440 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:2324:17 2023-09-26T00:54:27,441 | 2023-09-26T00:54:27,441 2319 | let ret = hts_sys::bam_mods_query_type( 2023-09-26T00:54:27,442 | ---------------------------- arguments to this function are incorrect 2023-09-26T00:54:27,443 ... 2023-09-26T00:54:27,444 2324 | &mut canonical, 2023-09-26T00:54:27,445 | ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8` 2023-09-26T00:54:27,446 | 2023-09-26T00:54:27,447 = note: expected raw pointer `*mut u8` 2023-09-26T00:54:27,448 found mutable reference `&mut i8` 2023-09-26T00:54:27,448 note: function defined here 2023-09-26T00:54:27,449 --> /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:9439:12 2023-09-26T00:54:27,449 | 2023-09-26T00:54:27,449 9439 | pub fn bam_mods_query_type( 2023-09-26T00:54:27,450 | ^^^^^^^^^^^^^^^^^^^ 2023-09-26T00:54:27,625 error[E0308]: mismatched types 2023-09-26T00:54:27,625 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1128:29 2023-09-26T00:54:27,626 | 2023-09-26T00:54:27,626 1128 | (*rec).l_text = l_text as u64; 2023-09-26T00:54:27,627 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,627 | | 2023-09-26T00:54:27,628 | expected due to the type of this binding 2023-09-26T00:54:27,668 error[E0308]: mismatched types 2023-09-26T00:54:27,669 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1393:45 2023-09-26T00:54:27,670 | 2023-09-26T00:54:27,670 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2023-09-26T00:54:27,671 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,671 | | 2023-09-26T00:54:27,672 | arguments to this function are incorrect 2023-09-26T00:54:27,673 | 2023-09-26T00:54:27,673 note: function defined here 2023-09-26T00:54:27,674 --> /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:8520:12 2023-09-26T00:54:27,674 | 2023-09-26T00:54:27,675 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2023-09-26T00:54:27,676 | ^^^^^^^^^^^^^ 2023-09-26T00:54:27,676 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:54:27,677 | 2023-09-26T00:54:27,678 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2023-09-26T00:54:27,679 | + +++++++++++++++++++++ 2023-09-26T00:54:27,682 error[E0308]: mismatched types 2023-09-26T00:54:27,683 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1395:29 2023-09-26T00:54:27,683 | 2023-09-26T00:54:27,684 1395 | (*rec).l_text = l_text as u64; 2023-09-26T00:54:27,684 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,685 | | 2023-09-26T00:54:27,686 | expected due to the type of this binding 2023-09-26T00:54:27,931 error[E0308]: mismatched types 2023-09-26T00:54:27,932 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bcf/record.rs:1011:48 2023-09-26T00:54:27,932 | 2023-09-26T00:54:27,933 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2023-09-26T00:54:27,934 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:27,934 | | 2023-09-26T00:54:27,935 | arguments to this function are incorrect 2023-09-26T00:54:27,936 | 2023-09-26T00:54:27,937 note: function defined here 2023-09-26T00:54:27,937 --> /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:11642:12 2023-09-26T00:54:27,938 | 2023-09-26T00:54:27,938 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2023-09-26T00:54:27,939 | ^^^^^^^^ 2023-09-26T00:54:27,939 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:54:27,940 | 2023-09-26T00:54:27,940 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2023-09-26T00:54:27,941 | + +++++++++++++++++++++ 2023-09-26T00:54:28,169 error[E0308]: mismatched types 2023-09-26T00:54:28,170 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:118:17 2023-09-26T00:54:28,170 | 2023-09-26T00:54:28,171 115 | htslib::bgzf_read( 2023-09-26T00:54:28,171 | ----------------- arguments to this function are incorrect 2023-09-26T00:54:28,172 ... 2023-09-26T00:54:28,172 118 | buf.len() as u64, 2023-09-26T00:54:28,173 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:28,173 | 2023-09-26T00:54:28,174 note: function defined here 2023-09-26T00:54:28,174 --> /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10097:12 2023-09-26T00:54:28,175 | 2023-09-26T00:54:28,175 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2023-09-26T00:54:28,176 | ^^^^^^^^^ 2023-09-26T00:54:28,177 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:54:28,178 | 2023-09-26T00:54:28,178 118 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T00:54:28,179 | + +++++++++++++++++++++ 2023-09-26T00:54:28,205 error[E0308]: mismatched types 2023-09-26T00:54:28,206 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:264:17 2023-09-26T00:54:28,207 | 2023-09-26T00:54:28,207 261 | htslib::bgzf_write( 2023-09-26T00:54:28,208 | ------------------ arguments to this function are incorrect 2023-09-26T00:54:28,209 ... 2023-09-26T00:54:28,209 264 | buf.len() as u64, 2023-09-26T00:54:28,210 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T00:54:28,211 | 2023-09-26T00:54:28,212 note: function defined here 2023-09-26T00:54:28,212 --> /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10100:12 2023-09-26T00:54:28,213 | 2023-09-26T00:54:28,214 10100 | pub fn bgzf_write( 2023-09-26T00:54:28,215 | ^^^^^^^^^^ 2023-09-26T00:54:28,215 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T00:54:28,216 | 2023-09-26T00:54:28,217 264 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T00:54:28,217 | + +++++++++++++++++++++ 2023-09-26T00:54:28,385 For more information about this error, try `rustc --explain E0308`. 2023-09-26T00:54:28,401 error: could not compile `rust-htslib` (lib) due to 9 previous errors 2023-09-26T00:54:28,424 💥 maturin failed 2023-09-26T00:54:28,425 Caused by: Failed to build a native library through cargo 2023-09-26T00:54:28,426 Caused by: Cargo build finished with "exit status: 101": `"cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b/Cargo.toml" "--release" "--lib"` 2023-09-26T00:54:28,427 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2023-09-26T00:54:28,447 ERROR: [present-rich] Building wheel for pyft (pyproject.toml) exited with 1 2023-09-26T00:54:28,461 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp3qi4nr30[/] 2023-09-26T00:54:28,461 [bold magenta]cwd[/]: /tmp/pip-wheel-6mrii5nz/pyft_7a12fc6622fc4728befea0737fe25e0b 2023-09-26T00:54:28,461 Building wheel for pyft (pyproject.toml): finished with status 'error' 2023-09-26T00:54:28,464 ERROR: Failed building wheel for pyft 2023-09-26T00:54:28,467 Failed to build pyft 2023-09-26T00:54:28,468 ERROR: Failed to build one or more wheels 2023-09-26T00:54:28,469 Exception information: 2023-09-26T00:54:28,469 Traceback (most recent call last): 2023-09-26T00:54:28,469 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-26T00:54:28,469 status = run_func(*args) 2023-09-26T00:54:28,469 ^^^^^^^^^^^^^^^ 2023-09-26T00:54:28,469 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-26T00:54:28,469 return func(self, options, args) 2023-09-26T00:54:28,469 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-26T00:54:28,469 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-26T00:54:28,469 raise CommandError("Failed to build one or more wheels") 2023-09-26T00:54:28,469 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-26T00:54:28,473 Removed build tracker: '/tmp/pip-build-tracker-h4iu835u'