2023-09-26T01:15:20,773 Created temporary directory: /tmp/pip-build-tracker-46uid6u3 2023-09-26T01:15:20,774 Initialized build tracking at /tmp/pip-build-tracker-46uid6u3 2023-09-26T01:15:20,775 Created build tracker: /tmp/pip-build-tracker-46uid6u3 2023-09-26T01:15:20,775 Entered build tracker: /tmp/pip-build-tracker-46uid6u3 2023-09-26T01:15:20,776 Created temporary directory: /tmp/pip-wheel-itrprh_3 2023-09-26T01:15:20,779 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1ac0gz9 2023-09-26T01:15:20,800 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T01:15:20,804 2 location(s) to search for versions of pyft: 2023-09-26T01:15:20,804 * https://pypi.org/simple/pyft/ 2023-09-26T01:15:20,804 * https://www.piwheels.org/simple/pyft/ 2023-09-26T01:15:20,805 Fetching project page and analyzing links: https://pypi.org/simple/pyft/ 2023-09-26T01:15:20,806 Getting page https://pypi.org/simple/pyft/ 2023-09-26T01:15:20,807 Found index url https://pypi.org/simple/ 2023-09-26T01:15:20,947 Fetched page https://pypi.org/simple/pyft/ as application/vnd.pypi.simple.v1+json 2023-09-26T01:15:20,952 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/d7/62/f180b758be35243ef8a74361f533c974f7294541f16c9bc82cdcc29983e0/pyft-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,953 Found link https://files.pythonhosted.org/packages/c5/b3/4729bed033d7a353ec71381fa9e1ade1bf7a186a837ed3627b31265ddede/pyft-0.1.0.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.0 2023-09-26T01:15:20,953 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/cb/27/9e42da52a20d9b691ef37a8828764cd904af507b9107a386d55614566304/pyft-0.1.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,954 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/42/ec/1bf1615986fee7e2940dcd8902ef14457658d94208b01d95549253b62843/pyft-0.1.2-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,955 Found link https://files.pythonhosted.org/packages/0a/0b/139d65d937bc185b68d3eff484ce5c3ca5e3bfc3150b2020d0b604b64d66/pyft-0.1.2.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.2 2023-09-26T01:15:20,955 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/04/9b/b53f6e949dabc348f4bf60f9d11a473764e589d6041be074cbcf20a42900/pyft-0.1.3-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,956 Found link https://files.pythonhosted.org/packages/ab/26/5c78ed72341a5f6b18d9f84a1e9bc91739519c613d9051f732bf902f363d/pyft-0.1.3.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.3 2023-09-26T01:15:20,957 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/5f/76/cfcbbab37550bc51a7e8ea1bc59451ae618fb3eab2f20f7aa097bc615268/pyft-0.1.4-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,958 Found link https://files.pythonhosted.org/packages/c0/f0/c6f569449c4bbc95ba0281b2423d2c22fd957a7279f33b74ebd6aa94fefb/pyft-0.1.4.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.4 2023-09-26T01:15:20,959 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/b3/d8/e0bcc1d4dda64ccb39a697d7a2cf2f0afc1edddea2f97aa3b7351ada002d/pyft-0.1.5-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,960 Found link https://files.pythonhosted.org/packages/02/93/e6e05f3380af83b5c4b010925934d31dba5527b59d0f256aef8bd6b6b0d1/pyft-0.1.5.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.5 2023-09-26T01:15:20,960 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/7f/54/78d366d8c40d15e7e6ea673715003e9d3a1799bec389136fd3646cd2ee41/pyft-0.1.6-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,961 Found link https://files.pythonhosted.org/packages/a3/a5/862a667ea22060468fbb9a217ce8d25c4eda9ff6c64b79f5887e7d4123be/pyft-0.1.6.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.6 2023-09-26T01:15:20,963 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/ba/62/742233e64de296bde6230c31c8ac312c38ca40fa09f10cb36f8c3da3ba1b/pyft-0.1.7-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,963 Found link https://files.pythonhosted.org/packages/26/f9/bfc6b3b66cd901649cf13ea23361c69321e46ed3b1fe73981863371c14ea/pyft-0.1.7.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.7 2023-09-26T01:15:20,964 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/0b/b9/8bdacd074d2a6f38e3c2c3508cb1ddd1d1c00963e365f44c979bbd8c4df0/pyft-0.1.8-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,965 Found link https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.8 2023-09-26T01:15:20,965 Skipping link: No binaries permitted for pyft: https://files.pythonhosted.org/packages/aa/81/12871893127d02cf1d8ad68c808878816523e038fbd8fc69ef390b2d3069/pyft-0.1.9-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyft/) (requires-python:>=3.7) 2023-09-26T01:15:20,966 Found link https://files.pythonhosted.org/packages/1e/7e/215d26ce7f6964e59e74252153d7c41d6ffa58f372bc2180bf9365f86a70/pyft-0.1.9.tar.gz (from https://pypi.org/simple/pyft/) (requires-python:>=3.7), version: 0.1.9 2023-09-26T01:15:20,967 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyft/ 2023-09-26T01:15:20,967 Getting page https://www.piwheels.org/simple/pyft/ 2023-09-26T01:15:20,968 Found index url https://www.piwheels.org/simple/ 2023-09-26T01:15:21,147 Fetched page https://www.piwheels.org/simple/pyft/ as text/html 2023-09-26T01:15:21,149 Skipping link: not a file: https://www.piwheels.org/simple/pyft/ 2023-09-26T01:15:21,149 Skipping link: not a file: https://pypi.org/simple/pyft/ 2023-09-26T01:15:21,168 Given no hashes to check 1 links for project 'pyft': discarding no candidates 2023-09-26T01:15:21,186 Collecting pyft==0.1.8 2023-09-26T01:15:21,188 Created temporary directory: /tmp/pip-unpack-mkmorg44 2023-09-26T01:15:21,404 Downloading pyft-0.1.8.tar.gz (8.3 MB) 2023-09-26T01:15:23,590 Added pyft==0.1.8 from https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-46uid6u3' 2023-09-26T01:15:23,594 Created temporary directory: /tmp/pip-build-env-sxp_q_pp 2023-09-26T01:15:23,598 Installing build dependencies: started 2023-09-26T01:15:23,600 Running command pip subprocess to install build dependencies 2023-09-26T01:15:24,751 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-26T01:15:25,244 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T01:15:26,576 Collecting maturin<2.0,>=1.1 2023-09-26T01:15:26,577 Obtaining dependency information for maturin<2.0,>=1.1 from https://files.pythonhosted.org/packages/c1/22/4e716c0dfe799391176605ee4175c9dd1562dd057bb44f0358a365b6d8ce/maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata 2023-09-26T01:15:26,585 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl.metadata (18 kB) 2023-09-26T01:15:26,738 Using cached maturin-1.2.3-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.musllinux_1_1_armv7l.whl (9.2 MB) 2023-09-26T01:15:29,268 Installing collected packages: maturin 2023-09-26T01:15:29,987 Successfully installed maturin-1.2.3 2023-09-26T01:15:30,479 Installing build dependencies: finished with status 'done' 2023-09-26T01:15:30,482 Getting requirements to build wheel: started 2023-09-26T01:15:30,483 Running command Getting requirements to build wheel 2023-09-26T01:15:30,675 Getting requirements to build wheel: finished with status 'done' 2023-09-26T01:15:30,678 Created temporary directory: /tmp/pip-modern-metadata-xj061g1n 2023-09-26T01:15:30,680 Preparing metadata (pyproject.toml): started 2023-09-26T01:15:30,682 Running command Preparing metadata (pyproject.toml) 2023-09-26T01:15:31,303 Updating crates.io index 2023-09-26T01:15:34,301 Downloading crates ... 2023-09-26T01:15:35,599 Downloaded cmake v0.1.50 2023-09-26T01:15:35,624 Downloaded gzp v0.11.3 2023-09-26T01:15:35,879 Downloaded env_logger v0.9.3 2023-09-26T01:15:35,916 Downloaded hts-sys v2.1.1 2023-09-26T01:15:37,337 Downloaded curl-sys v0.4.63+curl-8.1.2 2023-09-26T01:15:41,822 Downloaded rustversion v1.0.14 2023-09-26T01:15:41,866 Downloaded target-lexicon v0.12.10 2023-09-26T01:15:41,899 Downloaded syn v2.0.26 2023-09-26T01:15:42,070 Downloaded portable-atomic v1.4.1 2023-09-26T01:15:42,162 Downloaded serde v1.0.172 2023-09-26T01:15:42,214 Downloaded ryu v1.0.15 2023-09-26T01:15:42,266 Downloaded ordered-float v3.7.0 2023-09-26T01:15:42,285 Downloaded linear-map v1.2.0 2023-09-26T01:15:42,308 Downloaded libdeflater v0.12.0 2023-09-26T01:15:42,341 Downloaded fs-utils v1.1.4 2023-09-26T01:15:42,353 Downloaded colored v2.0.4 2023-09-26T01:15:42,386 Downloaded bio-types v1.0.0 2023-09-26T01:15:42,413 Downloaded indicatif v0.17.5 2023-09-26T01:15:42,481 Downloaded serde_derive v1.0.172 2023-09-26T01:15:42,563 Downloaded rust-htslib v0.44.1 2023-09-26T01:15:42,625 Downloaded lzma-sys v0.1.20 2023-09-26T01:15:43,160 Downloaded libdeflate-sys v0.12.0 2023-09-26T01:15:43,319 Downloaded ieee754 v0.2.6 2023-09-26T01:15:43,351 Downloaded editdistancek v1.0.2 2023-09-26T01:15:43,366 Downloaded csv v1.2.2 2023-09-26T01:15:43,604 Downloaded core_affinity v0.8.0 2023-09-26T01:15:43,619 Downloaded console v0.15.7 2023-09-26T01:15:43,665 Downloaded bio v1.3.1 2023-09-26T01:15:43,807 Downloaded anyhow v1.0.72 2023-09-26T01:15:43,951 🔗 Found pyo3 bindings 2023-09-26T01:15:44,259 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T01:15:44,259 📡 Using build options features from pyproject.toml 2023-09-26T01:15:44,270 pyft-0.1.8.dist-info 2023-09-26T01:15:44,271 Checking for Rust toolchain.... 2023-09-26T01:15:44,271 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-xj061g1n --interpreter /usr/bin/python3` 2023-09-26T01:15:44,294 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-26T01:15:44,299 Source in /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42 has version 0.1.8, which satisfies requirement pyft==0.1.8 from https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz 2023-09-26T01:15:44,300 Removed pyft==0.1.8 from https://files.pythonhosted.org/packages/ce/e7/c55525cdea4a7421cd6f08f16b85d094a3f95578f8d410ae6849e20ae1aa/pyft-0.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-46uid6u3' 2023-09-26T01:15:44,304 Created temporary directory: /tmp/pip-unpack-gtl7si3_ 2023-09-26T01:15:44,305 Created temporary directory: /tmp/pip-unpack-4_z_b27y 2023-09-26T01:15:44,308 Building wheels for collected packages: pyft 2023-09-26T01:15:44,312 Created temporary directory: /tmp/pip-wheel-d9xi_wp7 2023-09-26T01:15:44,312 Destination directory: /tmp/pip-wheel-d9xi_wp7 2023-09-26T01:15:44,315 Building wheel for pyft (pyproject.toml): started 2023-09-26T01:15:44,316 Running command Building wheel for pyft (pyproject.toml) 2023-09-26T01:15:44,481 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2023-09-26T01:15:45,356 🔗 Found pyo3 bindings 2023-09-26T01:15:45,630 🐍 Found CPython 3.11 at /usr/bin/python3 2023-09-26T01:15:45,631 📡 Using build options features from pyproject.toml 2023-09-26T01:15:46,727 Compiling autocfg v1.1.0 2023-09-26T01:15:46,728 Compiling libc v0.2.147 2023-09-26T01:15:46,729 Compiling proc-macro2 v1.0.66 2023-09-26T01:15:46,731 Compiling unicode-ident v1.0.11 2023-09-26T01:15:49,606 Compiling cfg-if v1.0.0 2023-09-26T01:15:49,761 Compiling pkg-config v0.3.27 2023-09-26T01:15:54,781 Compiling quote v1.0.31 2023-09-26T01:15:56,482 Compiling syn v1.0.109 2023-09-26T01:15:57,735 Compiling jobserver v0.1.26 2023-09-26T01:15:58,225 Compiling syn v2.0.26 2023-09-26T01:16:00,703 Compiling cc v1.0.79 2023-09-26T01:16:12,707 Compiling libm v0.2.7 2023-09-26T01:16:13,855 Compiling num-traits v0.2.15 2023-09-26T01:16:14,005 Compiling memchr v2.5.0 2023-09-26T01:16:16,294 Compiling cmake v0.1.50 2023-09-26T01:16:19,928 Compiling libz-sys v1.1.9 2023-09-26T01:16:35,073 Compiling scopeguard v1.2.0 2023-09-26T01:16:37,579 Compiling getrandom v0.2.10 2023-09-26T01:16:39,365 Compiling openssl-src v111.26.0+1.1.1u 2023-09-26T01:16:41,387 Compiling target-lexicon v0.12.10 2023-09-26T01:16:46,010 Compiling openssl-sys v0.9.90 2023-09-26T01:16:50,003 Compiling aho-corasick v1.0.2 2023-09-26T01:16:50,086 Compiling regex-syntax v0.7.4 2023-09-26T01:17:04,315 Compiling lazy_static v1.4.0 2023-09-26T01:17:04,595 Compiling thiserror v1.0.43 2023-09-26T01:17:16,852 Compiling regex-automata v0.3.3 2023-09-26T01:17:28,079 Compiling thiserror-impl v1.0.43 2023-09-26T01:17:45,780 Compiling lock_api v0.4.10 2023-09-26T01:17:46,890 Compiling memoffset v0.9.0 2023-09-26T01:17:48,003 Compiling semver v0.1.20 2023-09-26T01:17:50,648 Compiling version_check v0.9.4 2023-09-26T01:17:53,374 Compiling rustversion v1.0.14 2023-09-26T01:17:55,762 Compiling crossbeam-utils v0.8.16 2023-09-26T01:17:57,684 Compiling rustc_version v0.1.7 2023-09-26T01:17:59,485 Compiling pyo3-build-config v0.19.1 2023-09-26T01:18:07,379 Compiling regex v1.9.1 2023-09-26T01:18:18,210 Compiling bzip2-sys v0.1.11+1.0.8 2023-09-26T01:18:20,026 Compiling lzma-sys v0.1.20 2023-09-26T01:18:22,606 Compiling curl-sys v0.4.63+curl-8.1.2 2023-09-26T01:18:23,965 Compiling num-integer v0.1.45 2023-09-26T01:18:25,121 Compiling quick-error v1.2.3 2023-09-26T01:18:25,416 Compiling serde v1.0.172 2023-09-26T01:18:25,948 Compiling tinyvec_macros v0.1.1 2023-09-26T01:18:26,089 Compiling tinyvec v1.6.0 2023-09-26T01:18:27,307 Compiling fs-utils v1.1.4 2023-09-26T01:18:35,459 Compiling newtype_derive v0.1.6 2023-09-26T01:18:41,835 Compiling serde_derive v1.0.172 2023-09-26T01:18:44,631 Compiling rand_core v0.6.4 2023-09-26T01:18:46,579 Compiling num_cpus v1.16.0 2023-09-26T01:18:55,106 Compiling crossbeam-epoch v0.9.15 2023-09-26T01:18:56,728 Compiling matrixmultiply v0.3.7 2023-09-26T01:18:57,936 Compiling ppv-lite86 v0.2.17 2023-09-26T01:19:00,909 Compiling rustix v0.38.4 2023-09-26T01:19:03,055 Compiling either v1.8.1 2023-09-26T01:19:04,444 Compiling glob v0.3.1 2023-09-26T01:19:08,294 Compiling once_cell v1.18.0 2023-09-26T01:19:09,835 Compiling heck v0.4.1 2023-09-26T01:19:11,384 Compiling crc32fast v1.3.2 2023-09-26T01:19:13,106 Compiling bytemuck v1.13.1 2023-09-26T01:19:14,852 Compiling byteorder v1.4.3 2023-09-26T01:19:17,321 Compiling paste v1.0.14 2023-09-26T01:19:19,019 Compiling safe_arch v0.7.1 2023-09-26T01:19:19,280 Compiling strum_macros v0.24.3 2023-09-26T01:19:47,133 Compiling hts-sys v2.1.1 2023-09-26T01:19:50,410 Compiling rand_chacha v0.3.1 2023-09-26T01:19:57,257 Compiling unicode-normalization v0.1.22 2023-09-26T01:20:02,735 Compiling proc-macro-error-attr v1.0.4 2023-09-26T01:20:03,858 Compiling derive-new v0.5.9 2023-09-26T01:20:04,640 Compiling num-complex v0.4.3 2023-09-26T01:20:08,293 Compiling libdeflate-sys v0.12.0 2023-09-26T01:20:09,518 Compiling num-rational v0.4.1 2023-09-26T01:20:10,217 Compiling futures-core v0.3.28 2023-09-26T01:20:10,605 Compiling typenum v1.16.0 2023-09-26T01:20:10,660 Compiling linux-raw-sys v0.4.3 2023-09-26T01:20:11,535 Compiling adler v1.0.2 2023-09-26T01:20:12,463 Compiling percent-encoding v2.3.0 2023-09-26T01:20:14,664 Compiling rawpointer v0.2.1 2023-09-26T01:20:14,926 Compiling bitflags v2.3.3 2023-09-26T01:20:15,655 Compiling unicode-bidi v0.3.13 2023-09-26T01:20:18,898 Compiling idna v0.4.0 2023-09-26T01:20:31,870 Compiling form_urlencoded v1.2.0 2023-09-26T01:20:33,874 Compiling miniz_oxide v0.7.1 2023-09-26T01:20:36,830 Compiling bio-types v1.0.0 2023-09-26T01:20:46,152 Compiling rand v0.8.5 2023-09-26T01:20:49,079 Compiling wide v0.7.11 2023-09-26T01:20:54,604 Compiling proc-macro-error v1.0.4 2023-09-26T01:20:55,819 Compiling pin-project-internal v1.1.2 2023-09-26T01:20:59,420 Compiling approx v0.5.1 2023-09-26T01:21:00,353 Compiling indexmap v1.9.3 2023-09-26T01:21:01,558 Compiling anyhow v1.0.72 2023-09-26T01:21:03,516 Compiling feature-probe v0.1.1 2023-09-26T01:21:04,500 Compiling log v0.4.19 2023-09-26T01:21:07,204 Compiling rayon-core v1.11.0 2023-09-26T01:21:08,279 Compiling custom_derive v0.1.7 2023-09-26T01:21:08,469 Compiling io-lifetimes v1.0.11 2023-09-26T01:21:09,934 Compiling pin-project v1.1.2 2023-09-26T01:21:10,200 Compiling bv v0.11.1 2023-09-26T01:21:11,294 Compiling simba v0.6.0 2023-09-26T01:21:11,891 Compiling rand_distr v0.4.3 2023-09-26T01:21:16,336 Compiling flate2 v1.0.26 2023-09-26T01:21:20,557 Compiling crossbeam-deque v0.8.3 2023-09-26T01:21:26,281 Compiling url v2.4.0 2023-09-26T01:21:45,139 Compiling is-terminal v0.4.9 2023-09-26T01:21:45,376 Compiling pyo3-ffi v0.19.1 2023-09-26T01:21:47,205 Compiling itertools v0.10.5 2023-09-26T01:21:55,005 Compiling crossbeam-channel v0.5.8 2023-09-26T01:22:03,922 Compiling spin v0.9.8 2023-09-26T01:22:05,944 Compiling nalgebra-macros v0.1.0 2023-09-26T01:22:06,368 Compiling nanorand v0.7.0 2023-09-26T01:22:09,595 Compiling ieee754 v0.2.6 2023-09-26T01:22:10,383 Compiling parking_lot_core v0.9.8 2023-09-26T01:22:11,078 Compiling portable-atomic v1.4.1 2023-09-26T01:22:11,830 Compiling rustix v0.37.23 2023-09-26T01:22:14,099 Compiling humantime v2.1.0 2023-09-26T01:22:14,926 Compiling linear-map v1.2.0 2023-09-26T01:22:16,657 Compiling futures-sink v0.3.28 2023-09-26T01:22:16,948 Compiling termcolor v1.2.0 2023-09-26T01:22:17,797 Compiling hashbrown v0.12.3 2023-09-26T01:22:23,119 Compiling flume v0.10.14 2023-09-26T01:22:32,604 Compiling nalgebra v0.29.0 2023-09-26T01:22:43,804 Compiling core_affinity v0.8.0 2023-09-26T01:22:44,554 Compiling enum-map-derive v0.6.0 2023-09-26T01:22:48,033 Compiling csv-core v0.1.10 2023-09-26T01:22:51,277 Compiling atty v0.2.14 2023-09-26T01:22:51,552 Compiling tempfile v3.6.0 2023-09-26T01:22:52,057 Compiling linux-raw-sys v0.3.8 2023-09-26T01:22:52,572 Compiling bit-vec v0.6.3 2023-09-26T01:22:54,500 Compiling unicode-width v0.1.10 2023-09-26T01:22:54,885 Compiling bytes v1.4.0 2023-09-26T01:23:03,844 Compiling itoa v1.0.9 2023-09-26T01:23:04,768 Compiling ryu v1.0.15 2023-09-26T01:23:05,287 Compiling smallvec v1.11.0 2023-09-26T01:23:07,295 Compiling bitflags v1.3.2 2023-09-26T01:23:07,371 Compiling fixedbitset v0.4.2 2023-09-26T01:23:10,349 Compiling petgraph v0.6.3 2023-09-26T01:23:35,615 Compiling csv v1.2.2 2023-09-26T01:23:37,123 Compiling console v0.15.7 2023-09-26T01:23:46,892 Compiling bit-set v0.5.3 2023-09-26T01:23:48,469 Compiling env_logger v0.9.3 2023-09-26T01:23:52,089 Compiling enum-map v1.1.1 2023-09-26T01:24:04,895 Compiling rayon v1.7.0 2023-09-26T01:24:11,256 Compiling getset v0.1.2 2023-09-26T01:24:19,987 Compiling statrs v0.16.0 2023-09-26T01:24:23,637 Compiling colored v2.0.4 2023-09-26T01:24:29,752 Compiling niffler v2.5.0 2023-09-26T01:24:36,981 Compiling ndarray v0.15.6 2023-09-26T01:24:44,477 Compiling multimap v0.8.3 2023-09-26T01:24:45,720 Compiling vec_map v0.8.2 2023-09-26T01:24:47,245 Compiling pyo3 v0.19.1 2023-09-26T01:24:48,739 Compiling fxhash v0.2.1 2023-09-26T01:24:49,379 Compiling itertools-num v0.1.3 2023-09-26T01:24:49,763 Compiling ordered-float v3.7.0 2023-09-26T01:24:50,484 Compiling pyo3-macros-backend v0.19.1 2023-09-26T01:24:53,497 Compiling editdistancek v1.0.2 2023-09-26T01:24:54,575 Compiling bytecount v0.6.3 2023-09-26T01:24:55,403 Compiling fastrand v1.9.0 2023-09-26T01:24:57,948 Compiling number_prefix v0.4.0 2023-09-26T01:24:58,665 Compiling fibertools-rs v0.2.6 (/tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/local_dependencies/fibertools-rs) 2023-09-26T01:25:00,330 Compiling triple_accel v0.4.0 2023-09-26T01:25:09,305 Compiling strum v0.25.0 2023-09-26T01:25:09,735 Compiling indicatif v0.17.5 2023-09-26T01:25:29,170 Compiling bio v1.3.1 2023-09-26T01:25:30,525 Compiling pyo3-macros v0.19.1 2023-09-26T01:25:44,961 Compiling parking_lot v0.12.1 2023-09-26T01:25:51,494 Compiling indoc v1.0.9 2023-09-26T01:25:55,961 Compiling unindent v0.1.11 2023-09-26T01:25:56,750 Compiling anstyle v1.0.1 2023-09-26T01:25:59,265 Compiling env_logger v0.10.0 2023-09-26T01:27:22,532 Compiling libdeflater v0.12.0 2023-09-26T01:27:23,489 Compiling gzp v0.11.3 2023-09-26T01:28:47,753 Compiling rust-htslib v0.44.1 2023-09-26T01:28:49,483 error[E0308]: mismatched types 2023-09-26T01:28:49,484 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:154:16 2023-09-26T01:28:49,484 | 2023-09-26T01:28:49,485 154 | l: sam_copy.len() as u64, 2023-09-26T01:28:49,485 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:49,491 error[E0308]: mismatched types 2023-09-26T01:28:49,491 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:155:16 2023-09-26T01:28:49,492 | 2023-09-26T01:28:49,493 155 | m: sam_copy.len() as u64, 2023-09-26T01:28:49,493 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:49,886 error[E0308]: mismatched types 2023-09-26T01:28:49,887 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:2324:17 2023-09-26T01:28:49,887 | 2023-09-26T01:28:49,888 2319 | let ret = hts_sys::bam_mods_query_type( 2023-09-26T01:28:49,889 | ---------------------------- arguments to this function are incorrect 2023-09-26T01:28:49,890 ... 2023-09-26T01:28:49,890 2324 | &mut canonical, 2023-09-26T01:28:49,891 | ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8` 2023-09-26T01:28:49,892 | 2023-09-26T01:28:49,892 = note: expected raw pointer `*mut u8` 2023-09-26T01:28:49,893 found mutable reference `&mut i8` 2023-09-26T01:28:49,894 note: function defined here 2023-09-26T01:28:49,894 --> /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:9439:12 2023-09-26T01:28:49,895 | 2023-09-26T01:28:49,896 9439 | pub fn bam_mods_query_type( 2023-09-26T01:28:49,897 | ^^^^^^^^^^^^^^^^^^^ 2023-09-26T01:28:50,066 error[E0308]: mismatched types 2023-09-26T01:28:50,066 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1128:29 2023-09-26T01:28:50,067 | 2023-09-26T01:28:50,068 1128 | (*rec).l_text = l_text as u64; 2023-09-26T01:28:50,069 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,069 | | 2023-09-26T01:28:50,070 | expected due to the type of this binding 2023-09-26T01:28:50,107 error[E0308]: mismatched types 2023-09-26T01:28:50,107 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1393:45 2023-09-26T01:28:50,108 | 2023-09-26T01:28:50,109 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2023-09-26T01:28:50,109 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,110 | | 2023-09-26T01:28:50,110 | arguments to this function are incorrect 2023-09-26T01:28:50,111 | 2023-09-26T01:28:50,111 note: function defined here 2023-09-26T01:28:50,112 --> /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:8520:12 2023-09-26T01:28:50,112 | 2023-09-26T01:28:50,113 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2023-09-26T01:28:50,113 | ^^^^^^^^^^^^^ 2023-09-26T01:28:50,114 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T01:28:50,114 | 2023-09-26T01:28:50,115 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2023-09-26T01:28:50,116 | + +++++++++++++++++++++ 2023-09-26T01:28:50,117 error[E0308]: mismatched types 2023-09-26T01:28:50,118 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1395:29 2023-09-26T01:28:50,119 | 2023-09-26T01:28:50,119 1395 | (*rec).l_text = l_text as u64; 2023-09-26T01:28:50,120 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,121 | | 2023-09-26T01:28:50,122 | expected due to the type of this binding 2023-09-26T01:28:50,360 error[E0308]: mismatched types 2023-09-26T01:28:50,360 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bcf/record.rs:1011:48 2023-09-26T01:28:50,361 | 2023-09-26T01:28:50,362 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2023-09-26T01:28:50,363 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,364 | | 2023-09-26T01:28:50,364 | arguments to this function are incorrect 2023-09-26T01:28:50,365 | 2023-09-26T01:28:50,366 note: function defined here 2023-09-26T01:28:50,366 --> /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:11642:12 2023-09-26T01:28:50,367 | 2023-09-26T01:28:50,368 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2023-09-26T01:28:50,369 | ^^^^^^^^ 2023-09-26T01:28:50,369 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T01:28:50,370 | 2023-09-26T01:28:50,371 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2023-09-26T01:28:50,372 | + +++++++++++++++++++++ 2023-09-26T01:28:50,593 error[E0308]: mismatched types 2023-09-26T01:28:50,594 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:118:17 2023-09-26T01:28:50,595 | 2023-09-26T01:28:50,596 115 | htslib::bgzf_read( 2023-09-26T01:28:50,596 | ----------------- arguments to this function are incorrect 2023-09-26T01:28:50,597 ... 2023-09-26T01:28:50,597 118 | buf.len() as u64, 2023-09-26T01:28:50,598 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,598 | 2023-09-26T01:28:50,599 note: function defined here 2023-09-26T01:28:50,600 --> /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10097:12 2023-09-26T01:28:50,600 | 2023-09-26T01:28:50,601 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2023-09-26T01:28:50,601 | ^^^^^^^^^ 2023-09-26T01:28:50,602 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T01:28:50,602 | 2023-09-26T01:28:50,603 118 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T01:28:50,603 | + +++++++++++++++++++++ 2023-09-26T01:28:50,624 error[E0308]: mismatched types 2023-09-26T01:28:50,625 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:264:17 2023-09-26T01:28:50,625 | 2023-09-26T01:28:50,626 261 | htslib::bgzf_write( 2023-09-26T01:28:50,626 | ------------------ arguments to this function are incorrect 2023-09-26T01:28:50,627 ... 2023-09-26T01:28:50,628 264 | buf.len() as u64, 2023-09-26T01:28:50,628 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-09-26T01:28:50,629 | 2023-09-26T01:28:50,630 note: function defined here 2023-09-26T01:28:50,630 --> /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/target/release/build/hts-sys-82bf3d2c8804e649/out/bindings.rs:10100:12 2023-09-26T01:28:50,631 | 2023-09-26T01:28:50,632 10100 | pub fn bgzf_write( 2023-09-26T01:28:50,632 | ^^^^^^^^^^ 2023-09-26T01:28:50,633 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-09-26T01:28:50,634 | 2023-09-26T01:28:50,635 264 | (buf.len() as u64).try_into().unwrap(), 2023-09-26T01:28:50,635 | + +++++++++++++++++++++ 2023-09-26T01:28:50,803 For more information about this error, try `rustc --explain E0308`. 2023-09-26T01:28:50,818 error: could not compile `rust-htslib` (lib) due to 9 previous errors 2023-09-26T01:28:50,841 💥 maturin failed 2023-09-26T01:28:50,842 Caused by: Failed to build a native library through cargo 2023-09-26T01:28:50,842 Caused by: Cargo build finished with "exit status: 101": `"cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42/Cargo.toml" "--release" "--lib"` 2023-09-26T01:28:50,851 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2023-09-26T01:28:50,867 ERROR: [present-rich] Building wheel for pyft (pyproject.toml) exited with 1 2023-09-26T01:28:50,880 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpmtzh4x2a[/] 2023-09-26T01:28:50,881 [bold magenta]cwd[/]: /tmp/pip-wheel-itrprh_3/pyft_26bfad932d49499db7b622f8e5b8fb42 2023-09-26T01:28:50,881 Building wheel for pyft (pyproject.toml): finished with status 'error' 2023-09-26T01:28:50,884 ERROR: Failed building wheel for pyft 2023-09-26T01:28:50,886 Failed to build pyft 2023-09-26T01:28:50,887 ERROR: Failed to build one or more wheels 2023-09-26T01:28:50,889 Exception information: 2023-09-26T01:28:50,889 Traceback (most recent call last): 2023-09-26T01:28:50,889 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-26T01:28:50,889 status = run_func(*args) 2023-09-26T01:28:50,889 ^^^^^^^^^^^^^^^ 2023-09-26T01:28:50,889 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-26T01:28:50,889 return func(self, options, args) 2023-09-26T01:28:50,889 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-26T01:28:50,889 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-26T01:28:50,889 raise CommandError("Failed to build one or more wheels") 2023-09-26T01:28:50,889 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-26T01:28:50,893 Removed build tracker: '/tmp/pip-build-tracker-46uid6u3'