2023-09-26T05:45:08,222 Created temporary directory: /tmp/pip-build-tracker-_67s46vu 2023-09-26T05:45:08,223 Initialized build tracking at /tmp/pip-build-tracker-_67s46vu 2023-09-26T05:45:08,224 Created build tracker: /tmp/pip-build-tracker-_67s46vu 2023-09-26T05:45:08,224 Entered build tracker: /tmp/pip-build-tracker-_67s46vu 2023-09-26T05:45:08,225 Created temporary directory: /tmp/pip-wheel-mxlx764n 2023-09-26T05:45:08,229 Created temporary directory: /tmp/pip-ephem-wheel-cache-rkdh4c_d 2023-09-26T05:45:08,251 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T05:45:08,255 2 location(s) to search for versions of moleculekit: 2023-09-26T05:45:08,255 * https://pypi.org/simple/moleculekit/ 2023-09-26T05:45:08,255 * https://www.piwheels.org/simple/moleculekit/ 2023-09-26T05:45:08,256 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/ 2023-09-26T05:45:08,256 Getting page https://pypi.org/simple/moleculekit/ 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links for project 'moleculekit': discarding no candidates 2023-09-26T05:45:09,070 Collecting moleculekit==1.7.7 2023-09-26T05:45:09,072 Created temporary directory: /tmp/pip-unpack-5o7ztt67 2023-09-26T05:45:09,211 Downloading moleculekit-1.7.7.tar.gz (6.1 MB) 2023-09-26T05:45:11,954 Added moleculekit==1.7.7 from https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz to build tracker '/tmp/pip-build-tracker-_67s46vu' 2023-09-26T05:45:11,962 Created temporary directory: /tmp/pip-build-env-mgkdq4mm 2023-09-26T05:45:11,967 Installing build dependencies: started 2023-09-26T05:45:11,968 Running command pip subprocess to install build dependencies 2023-09-26T05:45:13,088 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-26T05:45:13,581 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T05:45:15,124 Collecting setuptools 2023-09-26T05:45:15,125 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata 2023-09-26T05:45:15,130 Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB) 2023-09-26T05:45:15,847 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-26T05:45:15,855 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-26T05:45:15,861 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-26T05:45:15,868 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-26T05:45:15,875 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-09-26T05:45:16,258 Collecting numpy>=1.18.5 2023-09-26T05:45:17,157 Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB) 2023-09-26T05:45:18,899 Collecting Cython>=0.29.21 2023-09-26T05:45:18,900 Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata 2023-09-26T05:45:18,906 Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB) 2023-09-26T05:45:18,990 Collecting toml 2023-09-26T05:45:19,000 Downloading https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB) 2023-09-26T05:45:19,097 Collecting versioneer[toml]==0.28 2023-09-26T05:45:19,108 Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB) 2023-09-26T05:45:19,129 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.1 MB/s eta 0:00:00 2023-09-26T05:45:19,395 Using cached setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-26T05:45:19,431 Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB) 2023-09-26T05:45:21,892 Installing collected packages: versioneer, toml, setuptools, numpy, Cython 2023-09-26T05:45:21,922 Creating /tmp/pip-build-env-mgkdq4mm/overlay/local/bin 2023-09-26T05:45:21,924 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/versioneer to 755 2023-09-26T05:45:32,754 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/f2py to 755 2023-09-26T05:45:32,756 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/f2py3 to 755 2023-09-26T05:45:32,758 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/f2py3.11 to 755 2023-09-26T05:45:36,043 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/cygdb to 755 2023-09-26T05:45:36,045 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/cython to 755 2023-09-26T05:45:36,047 changing mode of /tmp/pip-build-env-mgkdq4mm/overlay/local/bin/cythonize to 755 2023-09-26T05:45:36,090 Successfully installed Cython-3.0.2 numpy-1.25.2 setuptools-68.2.2 toml-0.10.2 versioneer-0.28 2023-09-26T05:45:36,806 Installing build dependencies: finished with status 'done' 2023-09-26T05:45:36,809 Getting requirements to build wheel: started 2023-09-26T05:45:36,810 Running command Getting requirements to build wheel 2023-09-26T05:46:35,961 Compiling moleculekit/interactions/hbonds/hbonds.pyx because it changed. 2023-09-26T05:46:35,963 Compiling moleculekit/interactions/pipi/pipi.pyx because it changed. 2023-09-26T05:46:35,963 Compiling moleculekit/interactions/cationpi/cationpi.pyx because it changed. 2023-09-26T05:46:35,965 Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it changed. 2023-09-26T05:46:35,966 Compiling moleculekit/wrapping/wrapping.pyx because it changed. 2023-09-26T05:46:35,966 Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it changed. 2023-09-26T05:46:35,967 Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it changed. 2023-09-26T05:46:35,968 Compiling moleculekit/distance_utils/distance_utils.pyx because it changed. 2023-09-26T05:46:35,968 Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it changed. 2023-09-26T05:46:35,969 Compiling moleculekit/xtc_utils/xtc.pyx because it changed. 2023-09-26T05:46:35,969 Compiling moleculekit/tmalign/tmalign_util.pyx because it changed. 2023-09-26T05:46:35,970 [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx 2023-09-26T05:46:35,971 [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx 2023-09-26T05:46:35,971 [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx 2023-09-26T05:46:35,972 [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx 2023-09-26T05:46:35,972 [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx 2023-09-26T05:46:35,973 [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx 2023-09-26T05:46:35,973 [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx 2023-09-26T05:46:35,974 [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx 2023-09-26T05:46:35,975 [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx 2023-09-26T05:46:35,975 [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx 2023-09-26T05:46:35,976 [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx 2023-09-26T05:46:36,230 running egg_info 2023-09-26T05:46:36,235 writing moleculekit.egg-info/PKG-INFO 2023-09-26T05:46:36,239 writing dependency_links to moleculekit.egg-info/dependency_links.txt 2023-09-26T05:46:36,241 writing requirements to moleculekit.egg-info/requires.txt 2023-09-26T05:46:36,242 writing top-level names to moleculekit.egg-info/top_level.txt 2023-09-26T05:46:36,263 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:36,264 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be 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2023-09-26T05:46:36,536 no previously-included directories found matching 'moleculekit/test-data' 2023-09-26T05:46:36,537 no previously-included directories found matching 'moleculekit/tests' 2023-09-26T05:46:36,538 no previously-included directories found matching 'package' 2023-09-26T05:46:36,538 adding license file 'LICENSE' 2023-09-26T05:46:36,552 writing manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-09-26T05:46:37,577 Getting requirements to build wheel: finished with status 'done' 2023-09-26T05:46:37,591 Installing backend dependencies: started 2023-09-26T05:46:37,592 Running command pip subprocess to install backend dependencies 2023-09-26T05:46:38,821 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-26T05:46:39,364 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T05:46:39,867 Collecting wheel 2023-09-26T05:46:39,884 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-26T05:46:42,095 Installing collected packages: wheel 2023-09-26T05:46:42,317 Creating /tmp/pip-build-env-mgkdq4mm/normal/local/bin 2023-09-26T05:46:42,319 changing mode of /tmp/pip-build-env-mgkdq4mm/normal/local/bin/wheel to 755 2023-09-26T05:46:42,330 Successfully installed wheel-0.41.2 2023-09-26T05:46:44,277 Installing backend dependencies: finished with status 'done' 2023-09-26T05:46:44,278 Created temporary directory: /tmp/pip-modern-metadata-b8x0ll8a 2023-09-26T05:46:44,281 Preparing metadata (pyproject.toml): started 2023-09-26T05:46:44,282 Running command Preparing metadata (pyproject.toml) 2023-09-26T05:46:46,518 running dist_info 2023-09-26T05:46:46,520 creating /tmp/pip-modern-metadata-b8x0ll8a/moleculekit.egg-info 2023-09-26T05:46:46,526 writing /tmp/pip-modern-metadata-b8x0ll8a/moleculekit.egg-info/PKG-INFO 2023-09-26T05:46:46,529 writing dependency_links to 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be automatically included in the manifest: the path must be relative 2023-09-26T05:46:46,582 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:46,582 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:46,583 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:46,583 reading manifest file '/tmp/pip-modern-metadata-b8x0ll8a/moleculekit.egg-info/SOURCES.txt' 2023-09-26T05:46:46,584 reading manifest template 'MANIFEST.in' 2023-09-26T05:46:46,789 no previously-included directories found matching 'moleculekit/test-data' 2023-09-26T05:46:46,790 no previously-included directories found matching 'moleculekit/tests' 2023-09-26T05:46:46,790 no previously-included directories found matching 'package' 2023-09-26T05:46:46,791 adding license file 'LICENSE' 2023-09-26T05:46:46,801 writing manifest file '/tmp/pip-modern-metadata-b8x0ll8a/moleculekit.egg-info/SOURCES.txt' 2023-09-26T05:46:46,808 creating '/tmp/pip-modern-metadata-b8x0ll8a/moleculekit-1.7.7.dist-info' 2023-09-26T05:46:47,031 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-26T05:46:47,035 Source in /tmp/pip-wheel-mxlx764n/moleculekit_d05feff72b3a451fbe1249a0434cdaee has version 1.7.7, which satisfies requirement moleculekit==1.7.7 from https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz 2023-09-26T05:46:47,036 Removed moleculekit==1.7.7 from https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz from build tracker '/tmp/pip-build-tracker-_67s46vu' 2023-09-26T05:46:47,042 Created temporary directory: /tmp/pip-unpack-amh1e6xh 2023-09-26T05:46:47,043 Created temporary directory: /tmp/pip-unpack-nnd0h5kp 2023-09-26T05:46:47,051 Building wheels for collected packages: moleculekit 2023-09-26T05:46:47,055 Created temporary directory: /tmp/pip-wheel-693atsjo 2023-09-26T05:46:47,055 Destination directory: /tmp/pip-wheel-693atsjo 2023-09-26T05:46:47,057 Building wheel for moleculekit (pyproject.toml): started 2023-09-26T05:46:47,058 Running command Building wheel for moleculekit (pyproject.toml) 2023-09-26T05:46:49,187 running bdist_wheel 2023-09-26T05:46:49,201 running build 2023-09-26T05:46:49,202 running build_py 2023-09-26T05:46:49,208 creating build 2023-09-26T05:46:49,209 creating build/lib.linux-armv7l-cpython-311 2023-09-26T05:46:49,209 creating build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,210 copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,213 copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,215 copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,217 copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,219 copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,221 copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,224 copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,227 copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,228 copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,230 copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,232 copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,234 copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,236 copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,237 copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,239 copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,241 copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,243 copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,244 copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,248 copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,249 copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,251 copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:49,254 creating build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-09-26T05:46:49,255 copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-09-26T05:46:49,259 copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-09-26T05:46:49,260 copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-09-26T05:46:49,263 creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,264 copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,267 copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,269 copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,271 copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,273 copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,275 copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-09-26T05:46:49,278 creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-09-26T05:46:49,279 copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-09-26T05:46:49,280 copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-09-26T05:46:49,282 copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-09-26T05:46:49,284 copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-09-26T05:46:49,286 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx 2023-09-26T05:46:49,287 copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx 2023-09-26T05:46:49,289 creating build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,290 copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,292 copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,294 copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,296 copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,299 copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,301 copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,303 copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,305 copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,307 copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,310 copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,312 copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,314 copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,316 copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-09-26T05:46:49,318 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-09-26T05:46:49,319 copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-09-26T05:46:49,321 copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-09-26T05:46:49,324 creating build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,325 copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,327 copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,329 copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,332 copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,334 copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,336 copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,338 copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,340 copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,342 copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,344 copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,347 copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,349 copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,351 copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,352 copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,355 copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-09-26T05:46:49,357 creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-09-26T05:46:49,358 copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-09-26T05:46:49,360 copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-09-26T05:46:49,362 copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-09-26T05:46:49,364 copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-09-26T05:46:49,367 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-09-26T05:46:49,367 copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-09-26T05:46:49,369 copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-09-26T05:46:49,371 copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-09-26T05:46:49,373 copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-09-26T05:46:49,375 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-09-26T05:46:49,376 copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-09-26T05:46:49,378 copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-09-26T05:46:49,381 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-09-26T05:46:49,382 copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-09-26T05:46:49,384 copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-09-26T05:46:49,387 copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-09-26T05:46:49,388 copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-09-26T05:46:49,391 creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-09-26T05:46:49,392 copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-09-26T05:46:49,393 copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-09-26T05:46:49,395 running egg_info 2023-09-26T05:46:49,400 writing moleculekit.egg-info/PKG-INFO 2023-09-26T05:46:49,403 writing dependency_links to moleculekit.egg-info/dependency_links.txt 2023-09-26T05:46:49,405 writing requirements to moleculekit.egg-info/requires.txt 2023-09-26T05:46:49,406 writing top-level names to moleculekit.egg-info/top_level.txt 2023-09-26T05:46:49,416 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,417 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,417 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,418 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,418 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,419 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,419 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,419 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,420 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,421 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,421 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,422 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,423 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,423 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,424 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,424 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,425 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,425 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,426 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,427 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,427 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,428 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,428 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,429 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,429 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,430 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,430 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,431 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,432 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,432 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,433 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,433 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,434 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,434 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,435 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,435 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,436 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,437 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,437 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,438 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,438 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,439 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,439 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,439 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,440 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,440 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,441 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,442 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,442 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,443 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,443 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,444 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,444 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,445 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,446 dependency /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-09-26T05:46:49,446 reading manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-09-26T05:46:49,447 reading manifest template 'MANIFEST.in' 2023-09-26T05:46:49,639 no previously-included directories found matching 'moleculekit/test-data' 2023-09-26T05:46:49,640 no previously-included directories found matching 'moleculekit/tests' 2023-09-26T05:46:49,641 no previously-included directories found matching 'package' 2023-09-26T05:46:49,641 adding license file 'LICENSE' 2023-09-26T05:46:49,655 writing manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-09-26T05:46:49,663 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration. 2023-09-26T05:46:49,663 !! 2023-09-26T05:46:49,664 ******************************************************************************** 2023-09-26T05:46:49,665 ############################ 2023-09-26T05:46:49,665 # Package would be ignored # 2023-09-26T05:46:49,665 ############################ 2023-09-26T05:46:49,666 Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1], 2023-09-26T05:46:49,666 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,667 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,668 package, please make sure that 'moleculekit.atomselect_utils' is explicitly added 2023-09-26T05:46:49,668 to the `packages` configuration field. 2023-09-26T05:46:49,670 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,671 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,672 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,674 If you don't want 'moleculekit.atomselect_utils' to be distributed and are 2023-09-26T05:46:49,675 already explicitly excluding 'moleculekit.atomselect_utils' via 2023-09-26T05:46:49,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,677 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,678 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,680 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,681 even if it does not contain any `.py` files. 2023-09-26T05:46:49,681 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,682 directory, all directories are treated like packages. 2023-09-26T05:46:49,682 ******************************************************************************** 2023-09-26T05:46:49,683 !! 2023-09-26T05:46:49,684 check.warn(importable) 2023-09-26T05:46:49,684 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration. 2023-09-26T05:46:49,685 !! 2023-09-26T05:46:49,686 ******************************************************************************** 2023-09-26T05:46:49,687 ############################ 2023-09-26T05:46:49,688 # Package would be ignored # 2023-09-26T05:46:49,688 ############################ 2023-09-26T05:46:49,689 Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1], 2023-09-26T05:46:49,689 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,690 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,690 package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added 2023-09-26T05:46:49,691 to the `packages` configuration field. 2023-09-26T05:46:49,691 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,692 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,693 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,694 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,694 If you don't want 'moleculekit.bondguesser_utils' to be distributed and are 2023-09-26T05:46:49,695 already explicitly excluding 'moleculekit.bondguesser_utils' via 2023-09-26T05:46:49,695 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,695 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,696 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,697 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,698 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,700 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,700 even if it does not contain any `.py` files. 2023-09-26T05:46:49,701 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,701 directory, all directories are treated like packages. 2023-09-26T05:46:49,702 ******************************************************************************** 2023-09-26T05:46:49,703 !! 2023-09-26T05:46:49,704 check.warn(importable) 2023-09-26T05:46:49,704 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration. 2023-09-26T05:46:49,705 !! 2023-09-26T05:46:49,706 ******************************************************************************** 2023-09-26T05:46:49,706 ############################ 2023-09-26T05:46:49,707 # Package would be ignored # 2023-09-26T05:46:49,708 ############################ 2023-09-26T05:46:49,708 Python recognizes 'moleculekit.distance_utils' as an importable package[^1], 2023-09-26T05:46:49,709 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,710 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,710 package, please make sure that 'moleculekit.distance_utils' is explicitly added 2023-09-26T05:46:49,711 to the `packages` configuration field. 2023-09-26T05:46:49,712 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,713 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,714 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,717 If you don't want 'moleculekit.distance_utils' to be distributed and are 2023-09-26T05:46:49,717 already explicitly excluding 'moleculekit.distance_utils' via 2023-09-26T05:46:49,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,719 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,723 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,735 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,736 even if it does not contain any `.py` files. 2023-09-26T05:46:49,736 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,737 directory, all directories are treated like packages. 2023-09-26T05:46:49,737 ******************************************************************************** 2023-09-26T05:46:49,738 !! 2023-09-26T05:46:49,739 check.warn(importable) 2023-09-26T05:46:49,739 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration. 2023-09-26T05:46:49,740 !! 2023-09-26T05:46:49,741 ******************************************************************************** 2023-09-26T05:46:49,741 ############################ 2023-09-26T05:46:49,742 # Package would be ignored # 2023-09-26T05:46:49,742 ############################ 2023-09-26T05:46:49,743 Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1], 2023-09-26T05:46:49,743 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,745 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,745 package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added 2023-09-26T05:46:49,746 to the `packages` configuration field. 2023-09-26T05:46:49,754 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,759 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,761 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,762 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,763 If you don't want 'moleculekit.interactions.cationpi' to be distributed and are 2023-09-26T05:46:49,763 already explicitly excluding 'moleculekit.interactions.cationpi' via 2023-09-26T05:46:49,764 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,765 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,766 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,787 even if it does not contain any `.py` files. 2023-09-26T05:46:49,788 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,788 directory, all directories are treated like packages. 2023-09-26T05:46:49,789 ******************************************************************************** 2023-09-26T05:46:49,790 !! 2023-09-26T05:46:49,790 check.warn(importable) 2023-09-26T05:46:49,791 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration. 2023-09-26T05:46:49,791 !! 2023-09-26T05:46:49,792 ******************************************************************************** 2023-09-26T05:46:49,792 ############################ 2023-09-26T05:46:49,796 # Package would be ignored # 2023-09-26T05:46:49,796 ############################ 2023-09-26T05:46:49,796 Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1], 2023-09-26T05:46:49,797 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,799 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,806 package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added 2023-09-26T05:46:49,809 to the `packages` configuration field. 2023-09-26T05:46:49,811 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,811 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,812 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,813 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,814 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,815 If you don't want 'moleculekit.interactions.hbonds' to be distributed and are 2023-09-26T05:46:49,816 already explicitly excluding 'moleculekit.interactions.hbonds' via 2023-09-26T05:46:49,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,817 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,818 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,820 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,827 even if it does not contain any `.py` files. 2023-09-26T05:46:49,828 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,829 directory, all directories are treated like packages. 2023-09-26T05:46:49,829 ******************************************************************************** 2023-09-26T05:46:49,830 !! 2023-09-26T05:46:49,831 check.warn(importable) 2023-09-26T05:46:49,832 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration. 2023-09-26T05:46:49,832 !! 2023-09-26T05:46:49,833 ******************************************************************************** 2023-09-26T05:46:49,834 ############################ 2023-09-26T05:46:49,834 # Package would be ignored # 2023-09-26T05:46:49,835 ############################ 2023-09-26T05:46:49,836 Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1], 2023-09-26T05:46:49,836 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,838 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,838 package, please make sure that 'moleculekit.interactions.pipi' is explicitly added 2023-09-26T05:46:49,839 to the `packages` configuration field. 2023-09-26T05:46:49,840 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,841 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,842 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,844 If you don't want 'moleculekit.interactions.pipi' to be distributed and are 2023-09-26T05:46:49,844 already explicitly excluding 'moleculekit.interactions.pipi' via 2023-09-26T05:46:49,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,845 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,846 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,849 even if it does not contain any `.py` files. 2023-09-26T05:46:49,849 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,850 directory, all directories are treated like packages. 2023-09-26T05:46:49,850 ******************************************************************************** 2023-09-26T05:46:49,851 !! 2023-09-26T05:46:49,852 check.warn(importable) 2023-09-26T05:46:49,853 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration. 2023-09-26T05:46:49,853 !! 2023-09-26T05:46:49,855 ******************************************************************************** 2023-09-26T05:46:49,855 ############################ 2023-09-26T05:46:49,856 # Package would be ignored # 2023-09-26T05:46:49,857 ############################ 2023-09-26T05:46:49,857 Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1], 2023-09-26T05:46:49,858 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,859 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,860 package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added 2023-09-26T05:46:49,860 to the `packages` configuration field. 2023-09-26T05:46:49,861 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,862 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,863 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,865 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,866 If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are 2023-09-26T05:46:49,866 already explicitly excluding 'moleculekit.interactions.sigmahole' via 2023-09-26T05:46:49,867 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,867 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,868 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,869 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,871 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,872 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,872 even if it does not contain any `.py` files. 2023-09-26T05:46:49,873 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,873 directory, all directories are treated like packages. 2023-09-26T05:46:49,874 ******************************************************************************** 2023-09-26T05:46:49,874 !! 2023-09-26T05:46:49,875 check.warn(importable) 2023-09-26T05:46:49,875 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration. 2023-09-26T05:46:49,876 !! 2023-09-26T05:46:49,877 ******************************************************************************** 2023-09-26T05:46:49,877 ############################ 2023-09-26T05:46:49,877 # Package would be ignored # 2023-09-26T05:46:49,878 ############################ 2023-09-26T05:46:49,878 Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1], 2023-09-26T05:46:49,879 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:49,879 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:49,880 package, please make sure that 'moleculekit.occupancy_utils' is explicitly added 2023-09-26T05:46:49,880 to the `packages` configuration field. 2023-09-26T05:46:49,881 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:49,882 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:49,883 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:49,884 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:49,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:49,887 If you don't want 'moleculekit.occupancy_utils' to be distributed and are 2023-09-26T05:46:49,887 already explicitly excluding 'moleculekit.occupancy_utils' via 2023-09-26T05:46:49,888 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:49,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:49,889 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:49,890 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:49,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:49,893 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:49,893 even if it does not contain any `.py` files. 2023-09-26T05:46:49,894 On the other hand, currently there is no concept of package data 2023-09-26T05:46:49,895 directory, all directories are treated like packages. 2023-09-26T05:46:49,898 ******************************************************************************** 2023-09-26T05:46:49,919 !! 2023-09-26T05:46:49,933 check.warn(importable) 2023-09-26T05:46:49,958 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration. 2023-09-26T05:46:49,975 !! 2023-09-26T05:46:50,008 ******************************************************************************** 2023-09-26T05:46:50,021 ############################ 2023-09-26T05:46:50,026 # Package would be ignored # 2023-09-26T05:46:50,027 ############################ 2023-09-26T05:46:50,028 Python recognizes 'moleculekit.share' as an importable package[^1], 2023-09-26T05:46:50,028 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,029 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,029 package, please make sure that 'moleculekit.share' is explicitly added 2023-09-26T05:46:50,029 to the `packages` configuration field. 2023-09-26T05:46:50,030 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,031 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,031 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,032 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,033 If you don't want 'moleculekit.share' to be distributed and are 2023-09-26T05:46:50,033 already explicitly excluding 'moleculekit.share' via 2023-09-26T05:46:50,034 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,034 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,034 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,035 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,036 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,038 even if it does not contain any `.py` files. 2023-09-26T05:46:50,038 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,039 directory, all directories are treated like packages. 2023-09-26T05:46:50,039 ******************************************************************************** 2023-09-26T05:46:50,040 !! 2023-09-26T05:46:50,041 check.warn(importable) 2023-09-26T05:46:50,041 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration. 2023-09-26T05:46:50,042 !! 2023-09-26T05:46:50,043 ******************************************************************************** 2023-09-26T05:46:50,043 ############################ 2023-09-26T05:46:50,043 # Package would be ignored # 2023-09-26T05:46:50,044 ############################ 2023-09-26T05:46:50,045 Python recognizes 'moleculekit.share.atomselect' as an importable package[^1], 2023-09-26T05:46:50,045 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,046 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,047 package, please make sure that 'moleculekit.share.atomselect' is explicitly added 2023-09-26T05:46:50,047 to the `packages` configuration field. 2023-09-26T05:46:50,048 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,049 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,050 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,051 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,053 If you don't want 'moleculekit.share.atomselect' to be distributed and are 2023-09-26T05:46:50,053 already explicitly excluding 'moleculekit.share.atomselect' via 2023-09-26T05:46:50,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,054 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,055 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,056 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,058 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,058 even if it does not contain any `.py` files. 2023-09-26T05:46:50,058 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,059 directory, all directories are treated like packages. 2023-09-26T05:46:50,060 ******************************************************************************** 2023-09-26T05:46:50,060 !! 2023-09-26T05:46:50,061 check.warn(importable) 2023-09-26T05:46:50,061 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration. 2023-09-26T05:46:50,062 !! 2023-09-26T05:46:50,062 ******************************************************************************** 2023-09-26T05:46:50,063 ############################ 2023-09-26T05:46:50,063 # Package would be ignored # 2023-09-26T05:46:50,064 ############################ 2023-09-26T05:46:50,064 Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1], 2023-09-26T05:46:50,065 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,066 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,066 package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added 2023-09-26T05:46:50,067 to the `packages` configuration field. 2023-09-26T05:46:50,067 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,068 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,069 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,071 If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are 2023-09-26T05:46:50,071 already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via 2023-09-26T05:46:50,072 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,072 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,073 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,074 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,075 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,077 even if it does not contain any `.py` files. 2023-09-26T05:46:50,077 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,078 directory, all directories are treated like packages. 2023-09-26T05:46:50,078 ******************************************************************************** 2023-09-26T05:46:50,079 !! 2023-09-26T05:46:50,080 check.warn(importable) 2023-09-26T05:46:50,081 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration. 2023-09-26T05:46:50,081 !! 2023-09-26T05:46:50,082 ******************************************************************************** 2023-09-26T05:46:50,082 ############################ 2023-09-26T05:46:50,083 # Package would be ignored # 2023-09-26T05:46:50,083 ############################ 2023-09-26T05:46:50,083 Python recognizes 'moleculekit.tmalign' as an importable package[^1], 2023-09-26T05:46:50,084 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,085 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,085 package, please make sure that 'moleculekit.tmalign' is explicitly added 2023-09-26T05:46:50,085 to the `packages` configuration field. 2023-09-26T05:46:50,086 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,087 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,087 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,088 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,089 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,090 If you don't want 'moleculekit.tmalign' to be distributed and are 2023-09-26T05:46:50,090 already explicitly excluding 'moleculekit.tmalign' via 2023-09-26T05:46:50,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,092 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,092 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,095 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,095 even if it does not contain any `.py` files. 2023-09-26T05:46:50,096 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,096 directory, all directories are treated like packages. 2023-09-26T05:46:50,097 ******************************************************************************** 2023-09-26T05:46:50,098 !! 2023-09-26T05:46:50,098 check.warn(importable) 2023-09-26T05:46:50,099 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration. 2023-09-26T05:46:50,099 !! 2023-09-26T05:46:50,100 ******************************************************************************** 2023-09-26T05:46:50,101 ############################ 2023-09-26T05:46:50,101 # Package would be ignored # 2023-09-26T05:46:50,102 ############################ 2023-09-26T05:46:50,102 Python recognizes 'moleculekit.tmalign.include' as an importable package[^1], 2023-09-26T05:46:50,103 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,104 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,104 package, please make sure that 'moleculekit.tmalign.include' is explicitly added 2023-09-26T05:46:50,105 to the `packages` configuration field. 2023-09-26T05:46:50,106 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,107 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,108 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,109 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,109 If you don't want 'moleculekit.tmalign.include' to be distributed and are 2023-09-26T05:46:50,110 already explicitly excluding 'moleculekit.tmalign.include' via 2023-09-26T05:46:50,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,111 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,112 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,113 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,114 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,114 even if it does not contain any `.py` files. 2023-09-26T05:46:50,115 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,115 directory, all directories are treated like packages. 2023-09-26T05:46:50,116 ******************************************************************************** 2023-09-26T05:46:50,116 !! 2023-09-26T05:46:50,117 check.warn(importable) 2023-09-26T05:46:50,117 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration. 2023-09-26T05:46:50,118 !! 2023-09-26T05:46:50,119 ******************************************************************************** 2023-09-26T05:46:50,119 ############################ 2023-09-26T05:46:50,120 # Package would be ignored # 2023-09-26T05:46:50,120 ############################ 2023-09-26T05:46:50,120 Python recognizes 'moleculekit.tmalign.src' as an importable package[^1], 2023-09-26T05:46:50,121 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,122 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,122 package, please make sure that 'moleculekit.tmalign.src' is explicitly added 2023-09-26T05:46:50,123 to the `packages` configuration field. 2023-09-26T05:46:50,124 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,125 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,126 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,128 If you don't want 'moleculekit.tmalign.src' to be distributed and are 2023-09-26T05:46:50,128 already explicitly excluding 'moleculekit.tmalign.src' via 2023-09-26T05:46:50,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,130 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,130 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,133 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,133 even if it does not contain any `.py` files. 2023-09-26T05:46:50,134 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,134 directory, all directories are treated like packages. 2023-09-26T05:46:50,135 ******************************************************************************** 2023-09-26T05:46:50,136 !! 2023-09-26T05:46:50,136 check.warn(importable) 2023-09-26T05:46:50,137 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration. 2023-09-26T05:46:50,137 !! 2023-09-26T05:46:50,138 ******************************************************************************** 2023-09-26T05:46:50,138 ############################ 2023-09-26T05:46:50,139 # Package would be ignored # 2023-09-26T05:46:50,139 ############################ 2023-09-26T05:46:50,139 Python recognizes 'moleculekit.wrapping' as an importable package[^1], 2023-09-26T05:46:50,140 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,141 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,141 package, please make sure that 'moleculekit.wrapping' is explicitly added 2023-09-26T05:46:50,142 to the `packages` configuration field. 2023-09-26T05:46:50,142 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,143 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,144 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,146 If you don't want 'moleculekit.wrapping' to be distributed and are 2023-09-26T05:46:50,147 already explicitly excluding 'moleculekit.wrapping' via 2023-09-26T05:46:50,147 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,147 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,148 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,149 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,150 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,151 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,152 even if it does not contain any `.py` files. 2023-09-26T05:46:50,152 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,153 directory, all directories are treated like packages. 2023-09-26T05:46:50,153 ******************************************************************************** 2023-09-26T05:46:50,154 !! 2023-09-26T05:46:50,155 check.warn(importable) 2023-09-26T05:46:50,155 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration. 2023-09-26T05:46:50,156 !! 2023-09-26T05:46:50,157 ******************************************************************************** 2023-09-26T05:46:50,157 ############################ 2023-09-26T05:46:50,158 # Package would be ignored # 2023-09-26T05:46:50,158 ############################ 2023-09-26T05:46:50,158 Python recognizes 'moleculekit.xtc_utils' as an importable package[^1], 2023-09-26T05:46:50,159 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,160 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,161 package, please make sure that 'moleculekit.xtc_utils' is explicitly added 2023-09-26T05:46:50,161 to the `packages` configuration field. 2023-09-26T05:46:50,162 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,163 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,164 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,165 If you don't want 'moleculekit.xtc_utils' to be distributed and are 2023-09-26T05:46:50,166 already explicitly excluding 'moleculekit.xtc_utils' via 2023-09-26T05:46:50,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,167 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,168 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,170 even if it does not contain any `.py` files. 2023-09-26T05:46:50,171 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,171 directory, all directories are treated like packages. 2023-09-26T05:46:50,172 ******************************************************************************** 2023-09-26T05:46:50,173 !! 2023-09-26T05:46:50,173 check.warn(importable) 2023-09-26T05:46:50,174 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration. 2023-09-26T05:46:50,174 !! 2023-09-26T05:46:50,175 ******************************************************************************** 2023-09-26T05:46:50,175 ############################ 2023-09-26T05:46:50,176 # Package would be ignored # 2023-09-26T05:46:50,176 ############################ 2023-09-26T05:46:50,177 Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1], 2023-09-26T05:46:50,177 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,178 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,178 package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added 2023-09-26T05:46:50,179 to the `packages` configuration field. 2023-09-26T05:46:50,180 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,181 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,182 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,184 If you don't want 'moleculekit.xtc_utils.include' to be distributed and are 2023-09-26T05:46:50,184 already explicitly excluding 'moleculekit.xtc_utils.include' via 2023-09-26T05:46:50,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,186 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,187 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,188 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,189 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,190 even if it does not contain any `.py` files. 2023-09-26T05:46:50,190 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,190 directory, all directories are treated like packages. 2023-09-26T05:46:50,191 ******************************************************************************** 2023-09-26T05:46:50,192 !! 2023-09-26T05:46:50,192 check.warn(importable) 2023-09-26T05:46:50,193 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration. 2023-09-26T05:46:50,193 !! 2023-09-26T05:46:50,194 ******************************************************************************** 2023-09-26T05:46:50,194 ############################ 2023-09-26T05:46:50,194 # Package would be ignored # 2023-09-26T05:46:50,195 ############################ 2023-09-26T05:46:50,196 Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1], 2023-09-26T05:46:50,196 but it is absent from setuptools' `packages` configuration. 2023-09-26T05:46:50,197 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T05:46:50,197 package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added 2023-09-26T05:46:50,198 to the `packages` configuration field. 2023-09-26T05:46:50,199 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T05:46:50,199 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T05:46:50,199 instead of `find_packages(...)`/`find:`). 2023-09-26T05:46:50,200 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T05:46:50,201 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T05:46:50,202 If you don't want 'moleculekit.xtc_utils.src' to be distributed and are 2023-09-26T05:46:50,202 already explicitly excluding 'moleculekit.xtc_utils.src' via 2023-09-26T05:46:50,203 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T05:46:50,204 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T05:46:50,204 combination with a more fine grained `package-data` configuration. 2023-09-26T05:46:50,205 You can read more about "package data files" on setuptools documentation page: 2023-09-26T05:46:50,206 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T05:46:50,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T05:46:50,208 even if it does not contain any `.py` files. 2023-09-26T05:46:50,208 On the other hand, currently there is no concept of package data 2023-09-26T05:46:50,209 directory, all directories are treated like packages. 2023-09-26T05:46:50,209 ******************************************************************************** 2023-09-26T05:46:50,210 !! 2023-09-26T05:46:50,211 check.warn(importable) 2023-09-26T05:46:50,211 copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:50,212 copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:50,212 creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-09-26T05:46:50,213 copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-09-26T05:46:50,213 copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-09-26T05:46:50,214 creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-09-26T05:46:50,214 copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-09-26T05:46:50,214 copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-09-26T05:46:50,215 creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-09-26T05:46:50,215 copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-09-26T05:46:50,216 copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-09-26T05:46:50,216 creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-09-26T05:46:50,216 copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-09-26T05:46:50,217 copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-09-26T05:46:50,217 creating build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-09-26T05:46:50,218 copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-09-26T05:46:50,218 copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-09-26T05:46:50,219 copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-09-26T05:46:50,219 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect 2023-09-26T05:46:50,220 copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect 2023-09-26T05:46:50,220 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr 2023-09-26T05:46:50,221 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,221 copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,222 copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,222 copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,222 copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,223 copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,223 copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,224 copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,224 copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,225 copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,225 copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,226 copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,226 copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,227 copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,227 copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,228 copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,228 copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,228 copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,229 copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,229 copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,230 copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,230 copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,230 copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,231 copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,231 copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,232 copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,232 copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,233 copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,233 copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,234 copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,234 copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,234 copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,235 copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,235 copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,236 copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,236 copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,237 copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,238 copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,238 copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,239 copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,239 copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,240 copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,240 copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,240 copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,241 copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,241 copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,242 copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,242 copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,242 copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,243 copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,243 copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,244 copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,244 copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,245 copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,245 copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,246 copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,246 copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,246 copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,247 copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,247 copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,248 copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,248 copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,249 copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,249 copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,250 copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,250 copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,251 copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,251 copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,252 copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,253 copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,253 copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,253 copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,254 copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,254 copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,254 copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,255 copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,255 copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,256 copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,256 copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,257 copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,257 copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,258 copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,258 copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,258 copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,259 copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,260 copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,260 copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,260 copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,261 copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,261 copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,262 copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,262 copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,263 copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,263 copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,264 copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,265 copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,265 copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,265 copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,266 copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,266 copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,267 copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,267 copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,267 copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,269 copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,271 copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,273 copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,275 copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,276 copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,278 copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,280 copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,282 copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,284 copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,286 copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,288 copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,290 copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,292 copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,294 copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,297 copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,299 copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,300 copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,302 copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,305 copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,307 copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,308 copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,310 copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,312 copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,314 copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,316 copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,318 copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,319 copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,321 copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,323 copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,325 copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,326 copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,328 copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,330 copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,332 copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,334 copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,336 copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,338 copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,340 copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,342 copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,344 copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,345 copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,347 copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,349 copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,351 copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,353 copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,355 copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,357 copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,359 copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,361 copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,363 copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,364 copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,366 copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,368 copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,370 copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,372 copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,374 copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,376 copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,378 copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,379 copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,381 copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,383 copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,385 copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,387 copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,389 copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,390 copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,392 copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,394 copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,396 copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,398 copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,400 copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,402 copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,404 copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,406 copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-09-26T05:46:50,408 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-09-26T05:46:50,409 copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-09-26T05:46:50,427 copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-09-26T05:46:50,429 copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-09-26T05:46:50,430 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include 2023-09-26T05:46:50,431 copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include 2023-09-26T05:46:50,433 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src 2023-09-26T05:46:50,434 copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src 2023-09-26T05:46:50,439 creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-09-26T05:46:50,440 copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-09-26T05:46:50,458 copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-09-26T05:46:50,460 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-09-26T05:46:50,461 copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-09-26T05:46:50,489 copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-09-26T05:46:50,491 copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-09-26T05:46:50,493 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-09-26T05:46:50,493 copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-09-26T05:46:50,496 copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-09-26T05:46:50,498 copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-09-26T05:46:50,500 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-09-26T05:46:50,501 copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-09-26T05:46:50,505 copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-09-26T05:46:50,507 copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-09-26T05:46:50,509 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-09-26T05:46:50,510 copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-09-26T05:46:50,531 copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-09-26T05:46:50,533 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-09-26T05:46:50,534 copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-09-26T05:46:50,555 copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-09-26T05:46:50,557 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-09-26T05:46:50,558 copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-09-26T05:46:50,577 copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-09-26T05:46:50,579 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-09-26T05:46:50,580 copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-09-26T05:46:50,607 copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-09-26T05:46:50,617 UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py 2023-09-26T05:46:50,618 set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.7' 2023-09-26T05:46:50,618 running build_ext 2023-09-26T05:46:50,627 building 'moleculekit.interactions.hbonds' extension 2023-09-26T05:46:50,627 creating build/temp.linux-armv7l-cpython-311 2023-09-26T05:46:50,628 creating build/temp.linux-armv7l-cpython-311/moleculekit 2023-09-26T05:46:50,629 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions 2023-09-26T05:46:50,629 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-09-26T05:46:50,630 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3 2023-09-26T05:46:50,945 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:46:50,946 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:46:50,946 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:46:50,947 from moleculekit/interactions/hbonds/hbonds.cpp:1192: 2023-09-26T05:46:50,947 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:46:50,948 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:46:50,949 | ^~~~~~~ 2023-09-26T05:47:21,427 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:47:21,715 building 'moleculekit.interactions.pipi' extension 2023-09-26T05:47:21,715 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-09-26T05:47:21,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3 2023-09-26T05:47:22,016 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:47:22,017 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:47:22,018 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:47:22,018 from moleculekit/interactions/pipi/pipi.cpp:1192: 2023-09-26T05:47:22,019 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:47:22,020 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:47:22,020 | ^~~~~~~ 2023-09-26T05:47:54,723 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:47:55,002 building 'moleculekit.interactions.cationpi' extension 2023-09-26T05:47:55,003 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-09-26T05:47:55,004 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3 2023-09-26T05:47:55,309 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:47:55,310 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:47:55,310 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:47:55,311 from moleculekit/interactions/cationpi/cationpi.cpp:1192: 2023-09-26T05:47:55,311 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:47:55,312 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:47:55,312 | ^~~~~~~ 2023-09-26T05:48:27,900 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:48:28,191 building 'moleculekit.interactions.sigmahole' extension 2023-09-26T05:48:28,192 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-09-26T05:48:28,193 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3 2023-09-26T05:48:28,536 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:48:28,537 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:48:28,537 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:48:28,538 from moleculekit/interactions/sigmahole/sigmahole.cpp:1192: 2023-09-26T05:48:28,538 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:48:28,539 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:48:28,539 | ^~~~~~~ 2023-09-26T05:49:00,344 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:49:00,623 building 'moleculekit.wrapping' extension 2023-09-26T05:49:00,624 creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping 2023-09-26T05:49:00,624 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3 2023-09-26T05:49:00,925 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:49:00,925 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:49:00,926 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:49:00,926 from moleculekit/wrapping/wrapping.cpp:1192: 2023-09-26T05:49:00,927 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:49:00,927 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:49:00,928 | ^~~~~~~ 2023-09-26T05:49:28,999 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:49:29,184 building 'moleculekit.bondguesser_utils' extension 2023-09-26T05:49:29,185 creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-09-26T05:49:29,185 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3 2023-09-26T05:49:29,496 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:49:29,496 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:49:29,497 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:49:29,498 from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192: 2023-09-26T05:49:29,499 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:49:29,499 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:49:29,500 | ^~~~~~~ 2023-09-26T05:49:31,820 moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’: 2023-09-26T05:49:31,821 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-26T05:49:31,822 19831 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { 2023-09-26T05:49:31,822 | ~~~~~~~~~~^~~~~~~~~~~ 2023-09-26T05:49:31,823 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-26T05:49:31,824 19843 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { 2023-09-26T05:49:31,824 | ~~~~~~~~~~^~~~~~~~~~~ 2023-09-26T05:49:31,825 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-26T05:49:31,825 19855 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-09-26T05:49:31,826 | ~~~~~~~~~~^~~~~~~~~~~ 2023-09-26T05:49:31,826 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,827 19894 | __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,827 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,828 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,829 19933 | __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-09-26T05:49:31,829 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,830 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,831 19972 | __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,831 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,832 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,833 20011 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,834 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,834 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,835 20017 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-09-26T05:49:31,835 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,836 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,837 20058 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,837 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,838 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,839 20064 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,839 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,840 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,841 20105 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-09-26T05:49:31,841 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,842 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,842 20111 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,843 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,843 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,844 20152 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,844 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,845 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,845 20205 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,846 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,846 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,847 20252 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,847 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,848 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,849 20293 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,850 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,850 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,851 20299 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-09-26T05:49:31,852 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,853 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,853 20305 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,854 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,855 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,855 20352 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-09-26T05:49:31,856 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,857 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,857 20358 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,858 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,859 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,859 20399 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-09-26T05:49:31,860 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,861 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,861 20411 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,862 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,862 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-09-26T05:49:31,863 20464 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-09-26T05:49:31,863 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,865 moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’: 2023-09-26T05:49:31,865 moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-26T05:49:31,866 21089 | __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes); 2023-09-26T05:49:31,866 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2023-09-26T05:49:31,867 moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-26T05:49:31,868 21126 | __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx); 2023-09-26T05:49:31,868 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-26T05:49:58,243 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:49:58,562 building 'moleculekit.atomselect_utils' extension 2023-09-26T05:49:58,563 creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-09-26T05:49:58,564 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3 2023-09-26T05:49:58,893 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:49:58,894 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:49:58,894 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:49:58,895 from moleculekit/atomselect_utils/atomselect_utils.cpp:1209: 2023-09-26T05:49:58,896 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:49:58,896 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:49:58,897 | ^~~~~~~ 2023-09-26T05:50:01,421 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&, std::vector >&, std::vector >&)’: 2023-09-26T05:50:01,421 moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-26T05:50:01,422 23820 | __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum); 2023-09-26T05:50:01,422 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-09-26T05:50:01,429 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector >&, std::vector >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&)’: 2023-09-26T05:50:01,430 moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-26T05:50:01,431 24075 | __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i); 2023-09-26T05:50:01,431 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-26T05:50:01,438 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector >&, std::vector >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&)’: 2023-09-26T05:50:01,439 moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-26T05:50:01,440 24345 | __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i); 2023-09-26T05:50:01,441 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-26T05:50:35,924 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:50:36,232 building 'moleculekit.distance_utils' extension 2023-09-26T05:50:36,233 creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-09-26T05:50:36,233 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3 2023-09-26T05:50:36,580 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:50:36,581 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:50:36,582 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:50:36,582 from moleculekit/distance_utils/distance_utils.cpp:1192: 2023-09-26T05:50:36,583 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:50:36,583 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:50:36,584 | ^~~~~~~ 2023-09-26T05:51:13,453 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:51:13,736 building 'moleculekit.occupancy_utils' extension 2023-09-26T05:51:13,737 creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-09-26T05:51:13,737 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3 2023-09-26T05:51:14,038 In file included from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-09-26T05:51:14,039 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-26T05:51:14,039 from /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-26T05:51:14,040 from moleculekit/occupancy_utils/occupancy_utils.cpp:1192: 2023-09-26T05:51:14,041 /tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-26T05:51:14,041 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-26T05:51:14,042 | ^~~~~~~ 2023-09-26T05:51:41,178 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:51:41,362 building 'moleculekit.xtc' extension 2023-09-26T05:51:41,362 creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-09-26T05:51:41,363 creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-09-26T05:51:41,364 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-mgkdq4mm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o 2023-09-26T05:51:42,002 moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,003 66 | "OK", 2023-09-26T05:51:42,003 | ^~~~ 2023-09-26T05:51:42,004 moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,005 67 | "Header", 2023-09-26T05:51:42,005 | ^~~~~~~~ 2023-09-26T05:51:42,006 moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,006 68 | "String", 2023-09-26T05:51:42,007 | ^~~~~~~~ 2023-09-26T05:51:42,007 moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,008 69 | "Double", 2023-09-26T05:51:42,009 | ^~~~~~~~ 2023-09-26T05:51:42,009 moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,010 70 | "Integer", 2023-09-26T05:51:42,010 | ^~~~~~~~~ 2023-09-26T05:51:42,011 moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,011 71 | "Float", 2023-09-26T05:51:42,012 | ^~~~~~~ 2023-09-26T05:51:42,013 moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,013 72 | "Unsigned integer", 2023-09-26T05:51:42,014 | ^~~~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,015 moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,016 73 | "Compressed 3D coordinate", 2023-09-26T05:51:42,016 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,017 moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,018 74 | "Closing file", 2023-09-26T05:51:42,019 | ^~~~~~~~~~~~~~ 2023-09-26T05:51:42,020 moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,020 75 | "Magic number", 2023-09-26T05:51:42,021 | ^~~~~~~~~~~~~~ 2023-09-26T05:51:42,022 moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,022 76 | "Not enough memory", 2023-09-26T05:51:42,023 | ^~~~~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,024 moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,025 77 | "End of file", 2023-09-26T05:51:42,025 | ^~~~~~~~~~~~~ 2023-09-26T05:51:42,026 moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-09-26T05:51:42,027 78 | "File not found" 2023-09-26T05:51:42,027 | ^~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,028 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’: 2023-09-26T05:51:42,029 moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,029 459 | while (size >= num && num_of_bits < 32) 2023-09-26T05:51:42,030 | ~~~~~^~~~~~ 2023-09-26T05:51:42,031 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’: 2023-09-26T05:51:42,032 moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,032 505 | while (bytes[num_of_bytes] >= num) 2023-09-26T05:51:42,033 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2023-09-26T05:51:42,033 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’: 2023-09-26T05:51:42,034 moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,034 614 | if (num_of_bits >= num_of_bytes * 8) 2023-09-26T05:51:42,035 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,035 moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,036 616 | for (i = 0; i < num_of_bytes; i++) 2023-09-26T05:51:42,036 | ~~^~~~~~~~~~~~~~ 2023-09-26T05:51:42,037 moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,037 624 | for (i = 0; i < num_of_bytes-1; i++) 2023-09-26T05:51:42,038 | ~~^~~~~~~~~~~~~~~~ 2023-09-26T05:51:42,039 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’: 2023-09-26T05:51:42,039 moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,040 664 | if (lastbits < num_of_bits) 2023-09-26T05:51:42,041 | ~~~~~~~~~^~~~~~~~~~~~~ 2023-09-26T05:51:42,041 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’: 2023-09-26T05:51:42,042 moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,043 785 | if(size3>xfp->buf1size) 2023-09-26T05:51:42,044 | ~~~~~^~~~~~~~~~~~~~ 2023-09-26T05:51:42,044 moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,045 842 | maxidx = (LASTIDX= size3 ) { return -1; } 2023-09-26T05:51:42,048 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,049 moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,049 935 | if(countmjh >= size3 ) { return -1; } 2023-09-26T05:51:42,050 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,051 moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,051 938 | if(countmjh >= size3 ) { return -1; } 2023-09-26T05:51:42,052 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,053 moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,054 945 | if(countmjh >= size3 ) { return -1; } 2023-09-26T05:51:42,055 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,055 moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,056 948 | if(countmjh >= size3 ) { return -1; } 2023-09-26T05:51:42,056 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,057 moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,057 951 | if(countmjh >= size3 ) { return -1; } 2023-09-26T05:51:42,058 | ~~~~~~~~~^~~~~~~~ 2023-09-26T05:51:42,058 moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] 2023-09-26T05:51:42,059 756 | int smallidx, minidx, maxidx; 2023-09-26T05:51:42,059 | ^~~~~~ 2023-09-26T05:51:42,060 moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] 2023-09-26T05:51:42,060 759 | int smallnum, smaller, larger, i, is_smaller, run; 2023-09-26T05:51:42,061 | ^~~~~~ 2023-09-26T05:51:42,062 moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable] 2023-09-26T05:51:42,062 763 | int errval=1; 2023-09-26T05:51:42,063 | ^~~~~~ 2023-09-26T05:51:42,064 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’: 2023-09-26T05:51:42,065 moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,065 1011 | if(size3>xfp->buf1size) 2023-09-26T05:51:42,066 | ~~~~~^~~~~~~~~~~~~~ 2023-09-26T05:51:42,067 moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,067 1068 | countmjh++; if( countmjh> size3) { return -1; } 2023-09-26T05:51:42,068 | ~~~~~~~~^~~~~~~ 2023-09-26T05:51:42,069 moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,069 1084 | countmjh++; if( countmjh> size3) { return -1; } 2023-09-26T05:51:42,070 | ~~~~~~~~^~~~~~~ 2023-09-26T05:51:42,071 moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,071 1098 | countmjh++; if( countmjh> size3) { return -1; } 2023-09-26T05:51:42,078 | ~~~~~~~~^~~~~~~ 2023-09-26T05:51:42,078 moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,079 1137 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-09-26T05:51:42,080 | ^ 2023-09-26T05:51:42,081 moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,082 1143 | maxidx = (LASTIDXxfp->buf1size) 2023-09-26T05:51:42,088 | ~~~~~^~~~~~~~~~~~~~ 2023-09-26T05:51:42,088 moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,089 1377 | maxidx = (LASTIDXxfp->buf1size) { 2023-09-26T05:51:42,099 | ~~~~~^~~~~~~~~~~~~~ 2023-09-26T05:51:42,099 moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-26T05:51:42,100 1628 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-09-26T05:51:42,101 | ^ 2023-09-26T05:51:42,101 moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-26T05:51:42,102 1633 | maxidx = (LASTIDX::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-09-26T05:53:07,754 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-26T05:53:07,755 439 | vector<_Tp, _Alloc>:: 2023-09-26T05:53:07,755 | ^~~~~~~~~~~~~~~~~~~ 2023-09-26T05:53:08,561 In file included from /usr/include/c++/12/vector:64: 2023-09-26T05:53:08,561 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-26T05:53:08,562 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20812:32, 2023-09-26T05:53:08,563 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52: 2023-09-26T05:53:08,564 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-26T05:53:08,564 1287 | _M_realloc_insert(end(), __x); 2023-09-26T05:53:08,565 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-26T05:53:08,566 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-26T05:53:08,566 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20826:33, 2023-09-26T05:53:08,567 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52: 2023-09-26T05:53:08,568 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-26T05:53:08,568 1287 | _M_realloc_insert(end(), __x); 2023-09-26T05:53:08,569 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-26T05:53:08,570 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-09-26T05:53:08,571 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20911:34, 2023-09-26T05:53:08,571 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52: 2023-09-26T05:53:08,572 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-26T05:53:08,572 1287 | _M_realloc_insert(end(), __x); 2023-09-26T05:53:08,572 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-26T05:53:10,899 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so 2023-09-26T05:53:11,293 UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py 2023-09-26T05:53:11,294 set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.7' 2023-09-26T05:53:11,294 installing to build/bdist.linux-armv7l/wheel 2023-09-26T05:53:11,295 running install 2023-09-26T05:53:11,320 running install_lib 2023-09-26T05:53:11,328 creating build/bdist.linux-armv7l 2023-09-26T05:53:11,329 creating build/bdist.linux-armv7l/wheel 2023-09-26T05:53:11,332 creating build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,334 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,410 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,412 copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,416 creating build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-09-26T05:53:11,417 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-09-26T05:53:11,421 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-09-26T05:53:11,423 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-09-26T05:53:11,426 copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,429 creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-09-26T05:53:11,430 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-09-26T05:53:11,433 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-09-26T05:53:11,455 creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,456 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,459 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,461 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,464 creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-09-26T05:53:11,466 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-09-26T05:53:11,468 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-09-26T05:53:11,470 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-09-26T05:53:11,472 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-09-26T05:53:11,475 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,478 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,480 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-09-26T05:53:11,483 copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,485 copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,487 copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,491 copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,493 copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:11,495 creating build/bdist.linux-armv7l/wheel/moleculekit/share 2023-09-26T05:53:11,496 creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect 2023-09-26T05:53:11,497 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect 2023-09-26T05:53:11,500 creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr 2023-09-26T05:53:11,503 creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,504 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,506 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,508 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,510 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,511 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,513 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,515 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,517 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,520 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,522 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,524 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,525 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,527 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,528 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,530 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,532 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,533 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,535 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,537 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,538 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,540 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,542 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,544 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,546 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,548 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,550 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,551 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,553 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,555 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,557 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,559 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,561 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,562 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,564 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,566 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,568 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,570 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,571 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,573 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,575 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,577 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,579 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,581 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,582 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,584 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,586 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,587 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,589 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,591 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,593 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,595 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,596 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,598 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,600 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,602 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,604 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,605 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,607 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,609 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,610 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,612 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,614 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,615 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,617 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,619 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,621 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,622 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,624 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,626 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,628 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,630 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,631 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,634 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,635 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,637 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,639 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,641 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,642 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,645 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,646 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,648 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,649 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,651 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,653 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,655 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,656 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,658 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,660 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,662 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,663 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,665 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,667 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,669 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,671 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,672 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,674 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,676 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,678 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,680 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,681 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,683 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,686 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,688 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,690 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,691 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,693 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,694 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,696 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,698 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,700 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,701 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,703 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,706 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,707 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,709 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,711 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,712 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,714 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,716 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,717 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,719 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,721 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,723 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,724 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,726 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,728 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,729 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,731 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,732 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,734 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,736 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,738 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,740 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,741 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,743 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,745 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,747 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,748 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,750 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,752 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,754 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,755 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,757 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,759 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,761 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,763 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,764 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,766 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,768 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,769 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,771 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,773 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,774 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,776 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,778 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,779 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,781 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,783 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,785 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,787 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,788 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,790 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,792 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,794 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,796 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,798 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,800 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,801 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,803 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,805 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,806 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,808 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,810 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,811 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,813 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-09-26T05:53:11,814 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-09-26T05:53:11,816 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-09-26T05:53:11,818 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-09-26T05:53:12,022 copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,024 creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-09-26T05:53:12,025 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-09-26T05:53:12,027 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-09-26T05:53:12,029 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-09-26T05:53:12,031 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-09-26T05:53:12,034 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx 2023-09-26T05:53:12,035 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-09-26T05:53:12,036 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-09-26T05:53:12,038 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-09-26T05:53:12,040 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-09-26T05:53:12,042 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-09-26T05:53:12,044 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx 2023-09-26T05:53:12,046 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-09-26T05:53:12,047 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-09-26T05:53:12,049 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-09-26T05:53:12,052 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-09-26T05:53:12,053 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-09-26T05:53:12,056 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-09-26T05:53:12,058 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-09-26T05:53:12,060 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-09-26T05:53:12,062 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,065 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,087 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,089 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-09-26T05:53:12,090 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-09-26T05:53:12,093 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src 2023-09-26T05:53:12,094 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src 2023-09-26T05:53:12,101 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-09-26T05:53:12,103 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include 2023-09-26T05:53:12,105 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include 2023-09-26T05:53:12,107 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-09-26T05:53:12,136 creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-09-26T05:53:12,137 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-09-26T05:53:12,172 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-09-26T05:53:12,176 creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-09-26T05:53:12,177 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-09-26T05:53:12,180 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-09-26T05:53:12,206 copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,209 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,234 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-09-26T05:53:12,235 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-09-26T05:53:12,237 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-09-26T05:53:12,240 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-09-26T05:53:12,242 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-09-26T05:53:12,244 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-09-26T05:53:12,262 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-09-26T05:53:12,265 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-09-26T05:53:12,265 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-09-26T05:53:12,268 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-09-26T05:53:12,270 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-09-26T05:53:12,271 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-09-26T05:53:12,273 creating build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,274 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,277 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,279 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,281 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,284 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,286 creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-09-26T05:53:12,287 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-09-26T05:53:12,289 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-09-26T05:53:12,291 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,293 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,295 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,298 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,300 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,302 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,305 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,307 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-09-26T05:53:12,309 creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-09-26T05:53:12,310 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-09-26T05:53:12,312 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-09-26T05:53:12,331 copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,333 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,335 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,336 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,358 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-09-26T05:53:12,359 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-09-26T05:53:12,379 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-09-26T05:53:12,381 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,383 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-09-26T05:53:12,384 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-09-26T05:53:12,386 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-09-26T05:53:12,412 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-09-26T05:53:12,413 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-09-26T05:53:12,416 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-09-26T05:53:12,435 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-09-26T05:53:12,436 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-09-26T05:53:12,459 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-09-26T05:53:12,461 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,483 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,505 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,508 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-09-26T05:53:12,527 creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-09-26T05:53:12,528 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-09-26T05:53:12,531 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-09-26T05:53:12,551 copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,553 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,574 copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,577 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,579 copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,580 copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,585 creating build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,586 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,588 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,590 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,592 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,594 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,597 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,599 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,601 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,603 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,605 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,608 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,610 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,612 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,614 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,617 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-09-26T05:53:12,619 copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,621 copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,623 copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,624 copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,627 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,645 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,664 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-09-26T05:53:12,692 running install_egg_info 2023-09-26T05:53:12,697 Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.7-py3.11.egg-info 2023-09-26T05:53:12,709 running install_scripts 2023-09-26T05:53:12,759 creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.7.dist-info/WHEEL 2023-09-26T05:53:12,761 creating '/tmp/pip-wheel-693atsjo/.tmp-v_442xl_/moleculekit-1.7.7-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T05:53:12,764 adding 'moleculekit/__init__.py' 2023-09-26T05:53:12,765 adding 'moleculekit/_version.py' 2023-09-26T05:53:12,767 adding 'moleculekit/align.py' 2023-09-26T05:53:13,092 adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:13,107 adding 'moleculekit/bondguesser.py' 2023-09-26T05:53:13,352 adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:13,363 adding 'moleculekit/config.py' 2023-09-26T05:53:13,364 adding 'moleculekit/dihedral.py' 2023-09-26T05:53:13,365 adding 'moleculekit/distance.py' 2023-09-26T05:53:13,663 adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:13,676 adding 'moleculekit/home.py' 2023-09-26T05:53:13,677 adding 'moleculekit/logging.ini' 2023-09-26T05:53:13,690 adding 'moleculekit/molecule.py' 2023-09-26T05:53:13,918 adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:13,929 adding 'moleculekit/opm.py' 2023-09-26T05:53:13,931 adding 'moleculekit/periodictable.py' 2023-09-26T05:53:13,932 adding 'moleculekit/pymolgraphics.py' 2023-09-26T05:53:13,933 adding 'moleculekit/rcsb.py' 2023-09-26T05:53:13,935 adding 'moleculekit/rdkitintegration.py' 2023-09-26T05:53:13,946 adding 'moleculekit/readers.py' 2023-09-26T05:53:14,542 adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:14,569 adding 'moleculekit/util.py' 2023-09-26T05:53:14,571 adding 'moleculekit/version.py' 2023-09-26T05:53:14,572 adding 'moleculekit/viewer.py' 2023-09-26T05:53:14,574 adding 'moleculekit/vmd_wrapper' 2023-09-26T05:53:14,575 adding 'moleculekit/vmdgraphics.py' 2023-09-26T05:53:14,578 adding 'moleculekit/vmdviewer.py' 2023-09-26T05:53:14,813 adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:14,827 adding 'moleculekit/writers.py' 2023-09-26T05:53:15,087 adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:15,098 adding 'moleculekit/atomselect/__init__.py' 2023-09-26T05:53:15,100 adding 'moleculekit/atomselect/analyze.py' 2023-09-26T05:53:15,102 adding 'moleculekit/atomselect/atomselect.py' 2023-09-26T05:53:15,104 adding 'moleculekit/atomselect/languageparser.py' 2023-09-26T05:53:15,207 adding 'moleculekit/atomselect_utils/atomselect_utils.cpp' 2023-09-26T05:53:15,221 adding 'moleculekit/atomselect_utils/atomselect_utils.pyx' 2023-09-26T05:53:15,311 adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp' 2023-09-26T05:53:15,323 adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx' 2023-09-26T05:53:15,420 adding 'moleculekit/distance_utils/distance_utils.cpp' 2023-09-26T05:53:15,432 adding 'moleculekit/distance_utils/distance_utils.pyx' 2023-09-26T05:53:15,434 adding 'moleculekit/interactions/__init__.py' 2023-09-26T05:53:15,714 adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:15,981 adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:15,994 adding 'moleculekit/interactions/interactions.py' 2023-09-26T05:53:16,270 adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:16,555 adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T05:53:16,657 adding 'moleculekit/interactions/cationpi/cationpi.cpp' 2023-09-26T05:53:16,668 adding 'moleculekit/interactions/cationpi/cationpi.pyx' 2023-09-26T05:53:16,757 adding 'moleculekit/interactions/hbonds/hbonds.cpp' 2023-09-26T05:53:16,768 adding 'moleculekit/interactions/hbonds/hbonds.pyx' 2023-09-26T05:53:16,858 adding 'moleculekit/interactions/pipi/pipi.cpp' 2023-09-26T05:53:16,870 adding 'moleculekit/interactions/pipi/pipi.pyx' 2023-09-26T05:53:16,960 adding 'moleculekit/interactions/sigmahole/sigmahole.cpp' 2023-09-26T05:53:16,971 adding 'moleculekit/interactions/sigmahole/sigmahole.pyx' 2023-09-26T05:53:17,056 adding 'moleculekit/occupancy_utils/occupancy_utils.cpp' 2023-09-26T05:53:17,067 adding 'moleculekit/occupancy_utils/occupancy_utils.pyx' 2023-09-26T05:53:17,068 adding 'moleculekit/pdbx/__init__.py' 2023-09-26T05:53:17,072 adding 'moleculekit/pdbx/reader/PdbxContainers.py' 2023-09-26T05:53:17,074 adding 'moleculekit/pdbx/reader/PdbxParser.py' 2023-09-26T05:53:17,077 adding 'moleculekit/pdbx/reader/PdbxReader.py' 2023-09-26T05:53:17,078 adding 'moleculekit/pdbx/reader/__init__.py' 2023-09-26T05:53:17,080 adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py' 2023-09-26T05:53:17,081 adding 'moleculekit/pdbx/tests/PdbxReaderTests.py' 2023-09-26T05:53:17,083 adding 'moleculekit/pdbx/tests/PdbxWriterTests.py' 2023-09-26T05:53:17,084 adding 'moleculekit/pdbx/tests/__init__.py' 2023-09-26T05:53:17,086 adding 'moleculekit/pdbx/writer/PdbxWriter.py' 2023-09-26T05:53:17,087 adding 'moleculekit/pdbx/writer/__init__.py' 2023-09-26T05:53:17,088 adding 'moleculekit/ply/__init__.py' 2023-09-26T05:53:17,093 adding 'moleculekit/ply/lex.py' 2023-09-26T05:53:17,104 adding 'moleculekit/ply/yacc.py' 2023-09-26T05:53:17,107 adding 'moleculekit/projections/__init__.py' 2023-09-26T05:53:17,109 adding 'moleculekit/projections/metriccoordinate.py' 2023-09-26T05:53:17,112 adding 'moleculekit/projections/metricdihedral.py' 2023-09-26T05:53:17,116 adding 'moleculekit/projections/metricdistance.py' 2023-09-26T05:53:17,118 adding 'moleculekit/projections/metricfluctuation.py' 2023-09-26T05:53:17,120 adding 'moleculekit/projections/metricgyration.py' 2023-09-26T05:53:17,123 adding 'moleculekit/projections/metricplumed2.py' 2023-09-26T05:53:17,125 adding 'moleculekit/projections/metricrmsd.py' 2023-09-26T05:53:17,127 adding 'moleculekit/projections/metricsasa.py' 2023-09-26T05:53:17,129 adding 'moleculekit/projections/metricsecondarystructure.py' 2023-09-26T05:53:17,131 adding 'moleculekit/projections/metricshell.py' 2023-09-26T05:53:17,133 adding 'moleculekit/projections/metricsphericalcoordinate.py' 2023-09-26T05:53:17,135 adding 'moleculekit/projections/metrictmscore.py' 2023-09-26T05:53:17,136 adding 'moleculekit/projections/projection.py' 2023-09-26T05:53:17,138 adding 'moleculekit/projections/util.py' 2023-09-26T05:53:17,140 adding 'moleculekit/share/ALA.cif' 2023-09-26T05:53:17,141 adding 'moleculekit/share/backbone.cif' 2023-09-26T05:53:18,441 adding 'moleculekit/share/opm_sequences.json' 2023-09-26T05:53:18,551 adding 'moleculekit/share/atomselect/atomselect.json' 2023-09-26T05:53:18,556 adding 'moleculekit/share/pdb2pqr/residues/.gitkeep' 2023-09-26T05:53:18,557 adding 'moleculekit/share/pdb2pqr/residues/004.dat' 2023-09-26T05:53:18,558 adding 'moleculekit/share/pdb2pqr/residues/004.xml' 2023-09-26T05:53:18,559 adding 'moleculekit/share/pdb2pqr/residues/03Y.dat' 2023-09-26T05:53:18,561 adding 'moleculekit/share/pdb2pqr/residues/03Y.xml' 2023-09-26T05:53:18,562 adding 'moleculekit/share/pdb2pqr/residues/0A1.dat' 2023-09-26T05:53:18,563 adding 'moleculekit/share/pdb2pqr/residues/0A1.xml' 2023-09-26T05:53:18,565 adding 'moleculekit/share/pdb2pqr/residues/0AF.dat' 2023-09-26T05:53:18,566 adding 'moleculekit/share/pdb2pqr/residues/0AF.xml' 2023-09-26T05:53:18,567 adding 'moleculekit/share/pdb2pqr/residues/0BN.dat' 2023-09-26T05:53:18,569 adding 'moleculekit/share/pdb2pqr/residues/0BN.xml' 2023-09-26T05:53:18,570 adding 'moleculekit/share/pdb2pqr/residues/1MH.dat' 2023-09-26T05:53:18,571 adding 'moleculekit/share/pdb2pqr/residues/1MH.xml' 2023-09-26T05:53:18,572 adding 'moleculekit/share/pdb2pqr/residues/2AS.dat' 2023-09-26T05:53:18,573 adding 'moleculekit/share/pdb2pqr/residues/2AS.xml' 2023-09-26T05:53:18,574 adding 'moleculekit/share/pdb2pqr/residues/2GX.dat' 2023-09-26T05:53:18,576 adding 'moleculekit/share/pdb2pqr/residues/2GX.xml' 2023-09-26T05:53:18,577 adding 'moleculekit/share/pdb2pqr/residues/2ML.dat' 2023-09-26T05:53:18,578 adding 'moleculekit/share/pdb2pqr/residues/2ML.xml' 2023-09-26T05:53:18,579 adding 'moleculekit/share/pdb2pqr/residues/2MR.dat' 2023-09-26T05:53:18,580 adding 'moleculekit/share/pdb2pqr/residues/2MR.xml' 2023-09-26T05:53:18,582 adding 'moleculekit/share/pdb2pqr/residues/4IN.dat' 2023-09-26T05:53:18,583 adding 'moleculekit/share/pdb2pqr/residues/4IN.xml' 2023-09-26T05:53:18,584 adding 'moleculekit/share/pdb2pqr/residues/4PH.dat' 2023-09-26T05:53:18,586 adding 'moleculekit/share/pdb2pqr/residues/4PH.xml' 2023-09-26T05:53:18,587 adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat' 2023-09-26T05:53:18,588 adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml' 2023-09-26T05:53:18,589 adding 'moleculekit/share/pdb2pqr/residues/5JP.dat' 2023-09-26T05:53:18,590 adding 'moleculekit/share/pdb2pqr/residues/5JP.xml' 2023-09-26T05:53:18,591 adding 'moleculekit/share/pdb2pqr/residues/AA4.dat' 2023-09-26T05:53:18,592 adding 'moleculekit/share/pdb2pqr/residues/AA4.xml' 2023-09-26T05:53:18,594 adding 'moleculekit/share/pdb2pqr/residues/ABA.dat' 2023-09-26T05:53:18,595 adding 'moleculekit/share/pdb2pqr/residues/ABA.xml' 2023-09-26T05:53:18,596 adding 'moleculekit/share/pdb2pqr/residues/AHP.dat' 2023-09-26T05:53:18,597 adding 'moleculekit/share/pdb2pqr/residues/AHP.xml' 2023-09-26T05:53:18,598 adding 'moleculekit/share/pdb2pqr/residues/ALC.dat' 2023-09-26T05:53:18,600 adding 'moleculekit/share/pdb2pqr/residues/ALC.xml' 2023-09-26T05:53:18,601 adding 'moleculekit/share/pdb2pqr/residues/ALN.dat' 2023-09-26T05:53:18,602 adding 'moleculekit/share/pdb2pqr/residues/ALN.xml' 2023-09-26T05:53:18,603 adding 'moleculekit/share/pdb2pqr/residues/ALY.dat' 2023-09-26T05:53:18,605 adding 'moleculekit/share/pdb2pqr/residues/ALY.xml' 2023-09-26T05:53:18,606 adding 'moleculekit/share/pdb2pqr/residues/APD.dat' 2023-09-26T05:53:18,607 adding 'moleculekit/share/pdb2pqr/residues/APD.xml' 2023-09-26T05:53:18,608 adding 'moleculekit/share/pdb2pqr/residues/BB8.dat' 2023-09-26T05:53:18,609 adding 'moleculekit/share/pdb2pqr/residues/BB8.xml' 2023-09-26T05:53:18,611 adding 'moleculekit/share/pdb2pqr/residues/BCS.dat' 2023-09-26T05:53:18,612 adding 'moleculekit/share/pdb2pqr/residues/BCS.xml' 2023-09-26T05:53:18,613 adding 'moleculekit/share/pdb2pqr/residues/BTK.dat' 2023-09-26T05:53:18,614 adding 'moleculekit/share/pdb2pqr/residues/BTK.xml' 2023-09-26T05:53:18,616 adding 'moleculekit/share/pdb2pqr/residues/CCS.dat' 2023-09-26T05:53:18,617 adding 'moleculekit/share/pdb2pqr/residues/CCS.xml' 2023-09-26T05:53:18,618 adding 'moleculekit/share/pdb2pqr/residues/CGU.dat' 2023-09-26T05:53:18,619 adding 'moleculekit/share/pdb2pqr/residues/CGU.xml' 2023-09-26T05:53:18,621 adding 'moleculekit/share/pdb2pqr/residues/CSA.dat' 2023-09-26T05:53:18,622 adding 'moleculekit/share/pdb2pqr/residues/CSA.xml' 2023-09-26T05:53:18,623 adding 'moleculekit/share/pdb2pqr/residues/CSO.dat' 2023-09-26T05:53:18,624 adding 'moleculekit/share/pdb2pqr/residues/CSO.xml' 2023-09-26T05:53:18,626 adding 'moleculekit/share/pdb2pqr/residues/CSP.dat' 2023-09-26T05:53:18,627 adding 'moleculekit/share/pdb2pqr/residues/CSP.xml' 2023-09-26T05:53:18,628 adding 'moleculekit/share/pdb2pqr/residues/CSS.dat' 2023-09-26T05:53:18,629 adding 'moleculekit/share/pdb2pqr/residues/CSS.xml' 2023-09-26T05:53:18,630 adding 'moleculekit/share/pdb2pqr/residues/D4P.dat' 2023-09-26T05:53:18,632 adding 'moleculekit/share/pdb2pqr/residues/D4P.xml' 2023-09-26T05:53:18,633 adding 'moleculekit/share/pdb2pqr/residues/DA2.dat' 2023-09-26T05:53:18,634 adding 'moleculekit/share/pdb2pqr/residues/DA2.xml' 2023-09-26T05:53:18,635 adding 'moleculekit/share/pdb2pqr/residues/DAB.dat' 2023-09-26T05:53:18,636 adding 'moleculekit/share/pdb2pqr/residues/DAB.xml' 2023-09-26T05:53:18,637 adding 'moleculekit/share/pdb2pqr/residues/DAH.dat' 2023-09-26T05:53:18,639 adding 'moleculekit/share/pdb2pqr/residues/DAH.xml' 2023-09-26T05:53:18,640 adding 'moleculekit/share/pdb2pqr/residues/DPP.dat' 2023-09-26T05:53:18,641 adding 'moleculekit/share/pdb2pqr/residues/DPP.xml' 2023-09-26T05:53:18,642 adding 'moleculekit/share/pdb2pqr/residues/ESC.dat' 2023-09-26T05:53:18,643 adding 'moleculekit/share/pdb2pqr/residues/ESC.xml' 2023-09-26T05:53:18,644 adding 'moleculekit/share/pdb2pqr/residues/FGL.dat' 2023-09-26T05:53:18,645 adding 'moleculekit/share/pdb2pqr/residues/FGL.xml' 2023-09-26T05:53:18,647 adding 'moleculekit/share/pdb2pqr/residues/GHG.dat' 2023-09-26T05:53:18,648 adding 'moleculekit/share/pdb2pqr/residues/GHG.xml' 2023-09-26T05:53:18,649 adding 'moleculekit/share/pdb2pqr/residues/GME.dat' 2023-09-26T05:53:18,650 adding 'moleculekit/share/pdb2pqr/residues/GME.xml' 2023-09-26T05:53:18,651 adding 'moleculekit/share/pdb2pqr/residues/GNC.dat' 2023-09-26T05:53:18,653 adding 'moleculekit/share/pdb2pqr/residues/GNC.xml' 2023-09-26T05:53:18,654 adding 'moleculekit/share/pdb2pqr/residues/HHK.dat' 2023-09-26T05:53:18,655 adding 'moleculekit/share/pdb2pqr/residues/HHK.xml' 2023-09-26T05:53:18,656 adding 'moleculekit/share/pdb2pqr/residues/HLU.dat' 2023-09-26T05:53:18,658 adding 'moleculekit/share/pdb2pqr/residues/HLU.xml' 2023-09-26T05:53:18,659 adding 'moleculekit/share/pdb2pqr/residues/HLX.dat' 2023-09-26T05:53:18,660 adding 'moleculekit/share/pdb2pqr/residues/HLX.xml' 2023-09-26T05:53:18,661 adding 'moleculekit/share/pdb2pqr/residues/HOX.dat' 2023-09-26T05:53:18,662 adding 'moleculekit/share/pdb2pqr/residues/HOX.xml' 2023-09-26T05:53:18,664 adding 'moleculekit/share/pdb2pqr/residues/HPE.dat' 2023-09-26T05:53:18,665 adding 'moleculekit/share/pdb2pqr/residues/HPE.xml' 2023-09-26T05:53:18,666 adding 'moleculekit/share/pdb2pqr/residues/HQA.dat' 2023-09-26T05:53:18,667 adding 'moleculekit/share/pdb2pqr/residues/HQA.xml' 2023-09-26T05:53:18,669 adding 'moleculekit/share/pdb2pqr/residues/HTR.dat' 2023-09-26T05:53:18,670 adding 'moleculekit/share/pdb2pqr/residues/HTR.xml' 2023-09-26T05:53:18,671 adding 'moleculekit/share/pdb2pqr/residues/HYP.dat' 2023-09-26T05:53:18,672 adding 'moleculekit/share/pdb2pqr/residues/HYP.xml' 2023-09-26T05:53:18,673 adding 'moleculekit/share/pdb2pqr/residues/I2M.dat' 2023-09-26T05:53:18,675 adding 'moleculekit/share/pdb2pqr/residues/I2M.xml' 2023-09-26T05:53:18,676 adding 'moleculekit/share/pdb2pqr/residues/IGL.dat' 2023-09-26T05:53:18,677 adding 'moleculekit/share/pdb2pqr/residues/IGL.xml' 2023-09-26T05:53:18,678 adding 'moleculekit/share/pdb2pqr/residues/IIL.dat' 2023-09-26T05:53:18,680 adding 'moleculekit/share/pdb2pqr/residues/IIL.xml' 2023-09-26T05:53:18,681 adding 'moleculekit/share/pdb2pqr/residues/IML.dat' 2023-09-26T05:53:18,682 adding 'moleculekit/share/pdb2pqr/residues/IML.xml' 2023-09-26T05:53:18,683 adding 'moleculekit/share/pdb2pqr/residues/KYN.dat' 2023-09-26T05:53:18,685 adding 'moleculekit/share/pdb2pqr/residues/KYN.xml' 2023-09-26T05:53:18,686 adding 'moleculekit/share/pdb2pqr/residues/LME.dat' 2023-09-26T05:53:18,688 adding 'moleculekit/share/pdb2pqr/residues/LME.xml' 2023-09-26T05:53:18,689 adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat' 2023-09-26T05:53:18,690 adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml' 2023-09-26T05:53:18,692 adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat' 2023-09-26T05:53:18,693 adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml' 2023-09-26T05:53:18,694 adding 'moleculekit/share/pdb2pqr/residues/M3L.dat' 2023-09-26T05:53:18,696 adding 'moleculekit/share/pdb2pqr/residues/M3L.xml' 2023-09-26T05:53:18,697 adding 'moleculekit/share/pdb2pqr/residues/ME0.dat' 2023-09-26T05:53:18,698 adding 'moleculekit/share/pdb2pqr/residues/ME0.xml' 2023-09-26T05:53:18,699 adding 'moleculekit/share/pdb2pqr/residues/MEA.dat' 2023-09-26T05:53:18,701 adding 'moleculekit/share/pdb2pqr/residues/MEA.xml' 2023-09-26T05:53:18,702 adding 'moleculekit/share/pdb2pqr/residues/MEN.dat' 2023-09-26T05:53:18,703 adding 'moleculekit/share/pdb2pqr/residues/MEN.xml' 2023-09-26T05:53:18,704 adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat' 2023-09-26T05:53:18,705 adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml' 2023-09-26T05:53:18,707 adding 'moleculekit/share/pdb2pqr/residues/MLE.dat' 2023-09-26T05:53:18,708 adding 'moleculekit/share/pdb2pqr/residues/MLE.xml' 2023-09-26T05:53:18,709 adding 'moleculekit/share/pdb2pqr/residues/MLY.dat' 2023-09-26T05:53:18,710 adding 'moleculekit/share/pdb2pqr/residues/MLY.xml' 2023-09-26T05:53:18,711 adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat' 2023-09-26T05:53:18,713 adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml' 2023-09-26T05:53:18,714 adding 'moleculekit/share/pdb2pqr/residues/MME.dat' 2023-09-26T05:53:18,715 adding 'moleculekit/share/pdb2pqr/residues/MME.xml' 2023-09-26T05:53:18,716 adding 'moleculekit/share/pdb2pqr/residues/MMO.dat' 2023-09-26T05:53:18,718 adding 'moleculekit/share/pdb2pqr/residues/MMO.xml' 2023-09-26T05:53:18,719 adding 'moleculekit/share/pdb2pqr/residues/MVA.dat' 2023-09-26T05:53:18,720 adding 'moleculekit/share/pdb2pqr/residues/MVA.xml' 2023-09-26T05:53:18,722 adding 'moleculekit/share/pdb2pqr/residues/NAL.dat' 2023-09-26T05:53:18,723 adding 'moleculekit/share/pdb2pqr/residues/NAL.xml' 2023-09-26T05:53:18,724 adding 'moleculekit/share/pdb2pqr/residues/NCY.dat' 2023-09-26T05:53:18,725 adding 'moleculekit/share/pdb2pqr/residues/NCY.xml' 2023-09-26T05:53:18,726 adding 'moleculekit/share/pdb2pqr/residues/NLE.dat' 2023-09-26T05:53:18,728 adding 'moleculekit/share/pdb2pqr/residues/NLE.xml' 2023-09-26T05:53:18,729 adding 'moleculekit/share/pdb2pqr/residues/NVA.dat' 2023-09-26T05:53:18,730 adding 'moleculekit/share/pdb2pqr/residues/NVA.xml' 2023-09-26T05:53:18,731 adding 'moleculekit/share/pdb2pqr/residues/NZC.dat' 2023-09-26T05:53:18,733 adding 'moleculekit/share/pdb2pqr/residues/NZC.xml' 2023-09-26T05:53:18,734 adding 'moleculekit/share/pdb2pqr/residues/OCY.dat' 2023-09-26T05:53:18,735 adding 'moleculekit/share/pdb2pqr/residues/OCY.xml' 2023-09-26T05:53:18,737 adding 'moleculekit/share/pdb2pqr/residues/OMX.dat' 2023-09-26T05:53:18,738 adding 'moleculekit/share/pdb2pqr/residues/OMX.xml' 2023-09-26T05:53:18,739 adding 'moleculekit/share/pdb2pqr/residues/ONL.dat' 2023-09-26T05:53:18,741 adding 'moleculekit/share/pdb2pqr/residues/ONL.xml' 2023-09-26T05:53:18,742 adding 'moleculekit/share/pdb2pqr/residues/ORM.dat' 2023-09-26T05:53:18,743 adding 'moleculekit/share/pdb2pqr/residues/ORM.xml' 2023-09-26T05:53:18,744 adding 'moleculekit/share/pdb2pqr/residues/P1L.dat' 2023-09-26T05:53:18,746 adding 'moleculekit/share/pdb2pqr/residues/P1L.xml' 2023-09-26T05:53:18,747 adding 'moleculekit/share/pdb2pqr/residues/PCA.dat' 2023-09-26T05:53:18,749 adding 'moleculekit/share/pdb2pqr/residues/PCA.xml' 2023-09-26T05:53:18,750 adding 'moleculekit/share/pdb2pqr/residues/PRK.dat' 2023-09-26T05:53:18,752 adding 'moleculekit/share/pdb2pqr/residues/PRK.xml' 2023-09-26T05:53:18,753 adding 'moleculekit/share/pdb2pqr/residues/PTR.dat' 2023-09-26T05:53:18,754 adding 'moleculekit/share/pdb2pqr/residues/PTR.xml' 2023-09-26T05:53:18,756 adding 'moleculekit/share/pdb2pqr/residues/SEP.dat' 2023-09-26T05:53:18,757 adding 'moleculekit/share/pdb2pqr/residues/SEP.xml' 2023-09-26T05:53:18,758 adding 'moleculekit/share/pdb2pqr/residues/TPO.dat' 2023-09-26T05:53:18,760 adding 'moleculekit/share/pdb2pqr/residues/TPO.xml' 2023-09-26T05:53:18,761 adding 'moleculekit/share/pdb2pqr/residues/TRO.dat' 2023-09-26T05:53:18,763 adding 'moleculekit/share/pdb2pqr/residues/TRO.xml' 2023-09-26T05:53:18,764 adding 'moleculekit/share/pdb2pqr/residues/TY2.dat' 2023-09-26T05:53:18,765 adding 'moleculekit/share/pdb2pqr/residues/TY2.xml' 2023-09-26T05:53:18,767 adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat' 2023-09-26T05:53:18,768 adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml' 2023-09-26T05:53:18,769 adding 'moleculekit/share/pdb2pqr/residues/YCM.dat' 2023-09-26T05:53:18,770 adding 'moleculekit/share/pdb2pqr/residues/YCM.xml' 2023-09-26T05:53:18,771 adding 'moleculekit/share/pdb2pqr/residues/YNM.dat' 2023-09-26T05:53:18,773 adding 'moleculekit/share/pdb2pqr/residues/YNM.xml' 2023-09-26T05:53:18,774 adding 'moleculekit/smallmol/__init__.py' 2023-09-26T05:53:18,779 adding 'moleculekit/smallmol/smallmol.py' 2023-09-26T05:53:18,782 adding 'moleculekit/smallmol/smallmollib.py' 2023-09-26T05:53:18,783 adding 'moleculekit/smallmol/test_smallmol.py' 2023-09-26T05:53:18,785 adding 'moleculekit/smallmol/test_smallmollib.py' 2023-09-26T05:53:18,787 adding 'moleculekit/smallmol/util.py' 2023-09-26T05:53:18,789 adding 'moleculekit/smallmol/tools/__init__.py' 2023-09-26T05:53:18,791 adding 'moleculekit/smallmol/tools/clustering.py' 2023-09-26T05:53:18,792 adding 'moleculekit/smallmol/tools/restrainedembed.py' 2023-09-26T05:53:18,794 adding 'moleculekit/smallmol/tools/test_tools.py' 2023-09-26T05:53:18,882 adding 'moleculekit/tmalign/tmalign_util.cpp' 2023-09-26T05:53:18,893 adding 'moleculekit/tmalign/tmalign_util.pyx' 2023-09-26T05:53:18,894 adding 'moleculekit/tmalign/tmalignlib.pxd' 2023-09-26T05:53:18,895 adding 'moleculekit/tmalign/include/TMAlign.h' 2023-09-26T05:53:18,913 adding 'moleculekit/tmalign/src/TMAlign.cpp' 2023-09-26T05:53:18,916 adding 'moleculekit/tools/__init__.py' 2023-09-26T05:53:18,918 adding 'moleculekit/tools/atomtyper.py' 2023-09-26T05:53:18,920 adding 'moleculekit/tools/autosegment.py' 2023-09-26T05:53:18,922 adding 'moleculekit/tools/crystalpacking.py' 2023-09-26T05:53:18,925 adding 'moleculekit/tools/detect.py' 2023-09-26T05:53:18,926 adding 'moleculekit/tools/docking.py' 2023-09-26T05:53:18,928 adding 'moleculekit/tools/graphalignment.py' 2023-09-26T05:53:18,930 adding 'moleculekit/tools/hhblitsprofile.py' 2023-09-26T05:53:18,931 adding 'moleculekit/tools/moleculechecks.py' 2023-09-26T05:53:18,937 adding 'moleculekit/tools/preparation.py' 2023-09-26T05:53:18,946 adding 'moleculekit/tools/preparation_customres.py' 2023-09-26T05:53:18,947 adding 'moleculekit/tools/sequencestructuralalignment.py' 2023-09-26T05:53:18,950 adding 'moleculekit/tools/voxeldescriptors.py' 2023-09-26T05:53:18,952 adding 'moleculekit/tools/obabel_tools/__init__.py' 2023-09-26T05:53:18,954 adding 'moleculekit/tools/obabel_tools/obabel_cli.py' 2023-09-26T05:53:19,041 adding 'moleculekit/wrapping/wrapping.cpp' 2023-09-26T05:53:19,051 adding 'moleculekit/wrapping/wrapping.pyx' 2023-09-26T05:53:19,139 adding 'moleculekit/xtc_utils/xtc.cpp' 2023-09-26T05:53:19,150 adding 'moleculekit/xtc_utils/xtc.pyx' 2023-09-26T05:53:19,151 adding 'moleculekit/xtc_utils/xtclib.pxd' 2023-09-26T05:53:19,154 adding 'moleculekit/xtc_utils/include/xdrfile.h' 2023-09-26T05:53:19,155 adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h' 2023-09-26T05:53:19,157 adding 'moleculekit/xtc_utils/include/xtc.h' 2023-09-26T05:53:19,164 adding 'moleculekit/xtc_utils/src/xdrfile.cpp' 2023-09-26T05:53:19,165 adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp' 2023-09-26T05:53:19,167 adding 'moleculekit/xtc_utils/src/xtc.cpp' 2023-09-26T05:53:19,170 adding 'moleculekit-1.7.7.dist-info/LICENSE' 2023-09-26T05:53:19,171 adding 'moleculekit-1.7.7.dist-info/METADATA' 2023-09-26T05:53:19,172 adding 'moleculekit-1.7.7.dist-info/WHEEL' 2023-09-26T05:53:19,173 adding 'moleculekit-1.7.7.dist-info/top_level.txt' 2023-09-26T05:53:19,178 adding 'moleculekit-1.7.7.dist-info/RECORD' 2023-09-26T05:53:19,331 removing build/bdist.linux-armv7l/wheel 2023-09-26T05:53:19,611 Building wheel for moleculekit (pyproject.toml): finished with status 'done' 2023-09-26T05:53:19,921 Created wheel for moleculekit: filename=moleculekit-1.7.7-cp311-cp311-linux_armv7l.whl size=12836567 sha256=99d446a8f686c6a6b3b321e039b4c0ef6722b3f7c579aa4470096234c6ffa056 2023-09-26T05:53:19,922 Stored in directory: /tmp/pip-ephem-wheel-cache-rkdh4c_d/wheels/89/f8/02/e28f049fe387e4b8cc1eb6b19bcbeeb9af5d6cec7c46cfb44d 2023-09-26T05:53:19,946 Successfully built moleculekit 2023-09-26T05:53:20,265 Removed build tracker: '/tmp/pip-build-tracker-_67s46vu'