2023-09-26T12:24:23,071 Created temporary directory: /tmp/pip-build-tracker-7mi3jxto 2023-09-26T12:24:23,072 Initialized build tracking at /tmp/pip-build-tracker-7mi3jxto 2023-09-26T12:24:23,072 Created build tracker: /tmp/pip-build-tracker-7mi3jxto 2023-09-26T12:24:23,073 Entered build tracker: /tmp/pip-build-tracker-7mi3jxto 2023-09-26T12:24:23,074 Created temporary directory: /tmp/pip-wheel-87hsi3ky 2023-09-26T12:24:23,077 Created temporary directory: /tmp/pip-ephem-wheel-cache-iru0qbdj 2023-09-26T12:24:23,104 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T12:24:23,108 2 location(s) to search for versions of mistree: 2023-09-26T12:24:23,108 * https://pypi.org/simple/mistree/ 2023-09-26T12:24:23,108 * https://www.piwheels.org/simple/mistree/ 2023-09-26T12:24:23,109 Fetching project page and analyzing links: https://pypi.org/simple/mistree/ 2023-09-26T12:24:23,109 Getting page https://pypi.org/simple/mistree/ 2023-09-26T12:24:23,111 Found index url https://pypi.org/simple/ 2023-09-26T12:24:23,326 Fetched page https://pypi.org/simple/mistree/ as application/vnd.pypi.simple.v1+json 2023-09-26T12:24:23,330 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/ab/66/1e59aff05619ae91ce6b59ce15fce6a24dcc7f62d867818c97f184253935/mistree-1.1-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,331 Found link https://files.pythonhosted.org/packages/55/4a/9144e1356cd1ecaa1994c0ad22ea3f6eeed22c0bb8b77e60191df834ce28/mistree-1.1.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.1 2023-09-26T12:24:23,331 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/02/70/1c8a91db8280758851a0d44a858d3a2434aa9518aa02b6d536e0ac5f4706/mistree-1.1.2-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,332 Found link https://files.pythonhosted.org/packages/96/14/bcb33d735a45e106576788adc24f129523c288db9f1aa22a2bbe7fec6367/mistree-1.1.2.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.1.2 2023-09-26T12:24:23,333 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/0f/fc/03154bbb9e6f5c37ef8768e6761fb823a2ab36ea7ab4dfaf51c3843176b0/mistree-1.1.3-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,334 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4a/33/7bb18d864f56104a1dc3cbd5242604dc7c4ed731f37a9d833c9c338c049f/mistree-1.1.3-py2.7-macosx-10.6-x86_64.egg (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,335 Found link https://files.pythonhosted.org/packages/40/98/daefe7cf574d1c4e3a0740648871ccde4152f23876d9061480371f08531b/mistree-1.1.3.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.1.3 2023-09-26T12:24:23,336 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/a3/eb/bc77b791f9dd0be590b55ff3af0490d574af16daf35121760ae6668a8181/mistree-1.2.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,336 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f1/dc/490ec30408f663a9bb9141661f7bb0db396397733638bd0a0ef366d78be8/mistree-1.2.0-py2.7-macosx-10.6-x86_64.egg (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,337 Found link https://files.pythonhosted.org/packages/aa/73/e9b3cfe2214d23ebb1ce050c49d32298d8c2717288240325b0e4406ede46/mistree-1.2.0.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.2.0 2023-09-26T12:24:23,338 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/5d/2e/c315193151f272d06705c0045ae99b581cdedb89ab362f33cef1688cf53f/mistree-1.2.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,339 Found link https://files.pythonhosted.org/packages/d9/a2/0d21148bc7792f4189992afb4e297e2a4f1bbc393a1ae3650f221f4026d0/mistree-1.2.1.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.2.1 2023-09-26T12:24:23,340 Skipping link: No binaries permitted for mistree: https://files.pythonhosted.org/packages/a1/eb/6979dd6d6811cef14d77bca13bcd1775cbab28643628e6833ecadfbf5d9d/mistree-1.2.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,341 Found link https://files.pythonhosted.org/packages/65/98/a2c29e47150eaf9ca5f86ed82bcea19696bdb11aa276b3d1e33223343826/mistree-1.2.2.tar.gz (from https://pypi.org/simple/mistree/) (requires-python:>=2.7), version: 1.2.2 2023-09-26T12:24:23,341 Fetching project page and analyzing links: https://www.piwheels.org/simple/mistree/ 2023-09-26T12:24:23,342 Getting page https://www.piwheels.org/simple/mistree/ 2023-09-26T12:24:23,343 Found index url https://www.piwheels.org/simple/ 2023-09-26T12:24:23,499 Fetched page https://www.piwheels.org/simple/mistree/ as text/html 2023-09-26T12:24:23,507 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=9cee450dd333504df5bb5ffd0a87f0f6181704897e7a4868ecbdb5264cfd82d9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,508 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=9cee450dd333504df5bb5ffd0a87f0f6181704897e7a4868ecbdb5264cfd82d9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,509 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.1-cp39-cp39-linux_armv7l.whl#sha256=8a8d5f87984f3a0566c29345a8e3bbfcc24965c39ccec80dcab59463c756fd21 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,509 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.1-cp39-cp39-linux_armv6l.whl#sha256=8a8d5f87984f3a0566c29345a8e3bbfcc24965c39ccec80dcab59463c756fd21 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,510 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=fd2cff7630bde1e132ff823dbe57de10a65f2659e79e6453055848654eefbd9d (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,510 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=fd2cff7630bde1e132ff823dbe57de10a65f2659e79e6453055848654eefbd9d (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,511 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=0a9a663f43aa848725fe3fae3b2d3cc5048f260f378bdd3a939dbbb2d73b0a95 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,512 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=0a9a663f43aa848725fe3fae3b2d3cc5048f260f378bdd3a939dbbb2d73b0a95 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,512 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=f768ffcb171d61a26351445765df0bf9115a7b690fca3e3a442d1c3ef2f4e15f (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,513 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=f768ffcb171d61a26351445765df0bf9115a7b690fca3e3a442d1c3ef2f4e15f (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,513 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp34-cp34m-linux_armv6l.whl#sha256=d1d8d997bbb7f7fc5ccb37a57a41c8459ed61eb07fb5c7b35813065e87739079 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,514 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.2.0-cp34-cp34m-linux_armv7l.whl#sha256=d1d8d997bbb7f7fc5ccb37a57a41c8459ed61eb07fb5c7b35813065e87739079 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,514 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=feb4a1af9897a970df30905e236ae4aea8f761f7d400298502cb5144cb13d02b (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,515 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=feb4a1af9897a970df30905e236ae4aea8f761f7d400298502cb5144cb13d02b (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,515 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp34-cp34m-linux_armv7l.whl#sha256=93dfc80a23dc7e892dbd293194fe5298fe7ae8a648ff509357e7ebef898d4698 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,516 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp34-cp34m-linux_armv6l.whl#sha256=93dfc80a23dc7e892dbd293194fe5298fe7ae8a648ff509357e7ebef898d4698 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,516 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d69e5a109c150ad147dd44170b39aa2563a597eeb265e718940172a2d71128c1 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,517 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d69e5a109c150ad147dd44170b39aa2563a597eeb265e718940172a2d71128c1 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,517 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=19ccb05fa70c1432a581c33b05e2bd3fcb47ecfc607fce92fc8d640e4d3241d9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,518 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=19ccb05fa70c1432a581c33b05e2bd3fcb47ecfc607fce92fc8d640e4d3241d9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,519 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp34-cp34m-linux_armv6l.whl#sha256=663f9280d23cd5ca85be3dfdb1e239520758dd1d36d938e99fa639461c4f6178 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,519 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp34-cp34m-linux_armv7l.whl#sha256=663f9280d23cd5ca85be3dfdb1e239520758dd1d36d938e99fa639461c4f6178 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,520 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=e908806a41e6c9a67f5b9da60c9ea52d738f728381d53ece77b2e3ef5d7b5d4a (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,520 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=e908806a41e6c9a67f5b9da60c9ea52d738f728381d53ece77b2e3ef5d7b5d4a (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,521 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp39-cp39-linux_armv7l.whl#sha256=1301907a9fc2ed180d9230975f9863067a61d1a9989ffbc208578c1f9cb52655 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,522 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp39-cp39-linux_armv6l.whl#sha256=1301907a9fc2ed180d9230975f9863067a61d1a9989ffbc208578c1f9cb52655 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,522 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp34-cp34m-linux_armv7l.whl#sha256=534c2c008b4af65b21e6a7f5725e34e0abdf928e364bd4c49b203967a5c289b9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,522 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp34-cp34m-linux_armv6l.whl#sha256=534c2c008b4af65b21e6a7f5725e34e0abdf928e364bd4c49b203967a5c289b9 (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,523 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp37-cp37m-linux_armv6l.whl#sha256=34ad60747a4a56661297728b9897ca508d413693ae5f729dce9ece601c7db64a (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,523 Skipping link: No binaries permitted for mistree: https://www.piwheels.org/simple/mistree/mistree-1.1-cp37-cp37m-linux_armv7l.whl#sha256=34ad60747a4a56661297728b9897ca508d413693ae5f729dce9ece601c7db64a (from https://www.piwheels.org/simple/mistree/) (requires-python:>=2.7) 2023-09-26T12:24:23,524 Skipping link: not a file: https://www.piwheels.org/simple/mistree/ 2023-09-26T12:24:23,524 Skipping link: not a file: https://pypi.org/simple/mistree/ 2023-09-26T12:24:23,543 Given no hashes to check 1 links for project 'mistree': discarding no candidates 2023-09-26T12:24:23,561 Collecting mistree==1.2.2 2023-09-26T12:24:23,563 Created temporary directory: /tmp/pip-unpack-y6qunfl6 2023-09-26T12:24:23,775 Downloading mistree-1.2.2.tar.gz (29 kB) 2023-09-26T12:24:23,845 Added mistree==1.2.2 from https://files.pythonhosted.org/packages/65/98/a2c29e47150eaf9ca5f86ed82bcea19696bdb11aa276b3d1e33223343826/mistree-1.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-7mi3jxto' 2023-09-26T12:24:23,846 Running setup.py (path:/tmp/pip-wheel-87hsi3ky/mistree_774efa057b834ab2af33d6c09e0ec5e3/setup.py) egg_info for package mistree 2023-09-26T12:24:23,848 Created temporary directory: /tmp/pip-pip-egg-info-y0rg5n1x 2023-09-26T12:24:23,848 Preparing metadata (setup.py): started 2023-09-26T12:24:23,850 Running command python setup.py egg_info 2023-09-26T12:24:24,533 /tmp/pip-wheel-87hsi3ky/mistree_774efa057b834ab2af33d6c09e0ec5e3/setup.py:4: DeprecationWarning: 2023-09-26T12:24:24,534 `numpy.distutils` is deprecated since NumPy 1.23.0, as a result 2023-09-26T12:24:24,534 of the deprecation of `distutils` itself. It will be removed for 2023-09-26T12:24:24,535 Python >= 3.12. For older Python versions it will remain present. 2023-09-26T12:24:24,535 It is recommended to use `setuptools < 60.0` for those Python versions. 2023-09-26T12:24:24,536 For more details, see: 2023-09-26T12:24:24,537 https://numpy.org/devdocs/reference/distutils_status_migration.html 2023-09-26T12:24:24,538 from numpy.distutils.core import setup, Extension 2023-09-26T12:24:25,302 running egg_info 2023-09-26T12:24:25,303 running build_src 2023-09-26T12:24:25,304 INFO: build_src 2023-09-26T12:24:25,305 INFO: building extension "mistree.levy_flight.utility_random_walk" sources 2023-09-26T12:24:25,306 INFO: f2py options: [] 2023-09-26T12:24:25,306 INFO: f2py:> build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walkmodule.c 2023-09-26T12:24:25,307 creating build 2023-09-26T12:24:25,307 creating build/src.linux-armv7l-3.11 2023-09-26T12:24:25,308 creating build/src.linux-armv7l-3.11/mistree 2023-09-26T12:24:25,308 creating build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:25,639 Reading fortran codes... 2023-09-26T12:24:25,639 Reading file 'mistree/levy_flight/utility_random_walk.f90' (format:free) 2023-09-26T12:24:25,640 Post-processing... 2023-09-26T12:24:25,640 Block: utility_random_walk 2023-09-26T12:24:25,641 Block: random_walk_fast_2d 2023-09-26T12:24:25,641 Block: random_walk_fast_3d 2023-09-26T12:24:25,641 Applying post-processing hooks... 2023-09-26T12:24:25,642 character_backward_compatibility_hook 2023-09-26T12:24:25,642 Post-processing (stage 2)... 2023-09-26T12:24:25,643 Building modules... 2023-09-26T12:24:25,643 Building module "utility_random_walk"... 2023-09-26T12:24:25,644 Generating possibly empty wrappers" 2023-09-26T12:24:25,645 Maybe empty "utility_random_walk-f2pywrappers.f" 2023-09-26T12:24:25,645 Constructing wrapper function "random_walk_fast_2d"... 2023-09-26T12:24:25,646 x,y = random_walk_fast_2d(step_size,phi,box_size,x_start,y_start,periodic,[length]) 2023-09-26T12:24:25,646 Generating possibly empty wrappers" 2023-09-26T12:24:25,646 Maybe empty "utility_random_walk-f2pywrappers.f" 2023-09-26T12:24:25,647 Constructing wrapper function "random_walk_fast_3d"... 2023-09-26T12:24:25,647 x,y,z = random_walk_fast_3d(step_size,phi,theta,box_size,x_start,y_start,z_start,periodic,[length]) 2023-09-26T12:24:25,648 Wrote C/API module "utility_random_walk" to file "build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walkmodule.c" 2023-09-26T12:24:25,648 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight/fortranobject.c' to sources. 2023-09-26T12:24:25,649 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight' to include_dirs. 2023-09-26T12:24:25,649 creating build/src.linux-armv7l-3.11/build 2023-09-26T12:24:25,650 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11 2023-09-26T12:24:25,650 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree 2023-09-26T12:24:25,651 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:25,652 copying /usr/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:25,652 copying /usr/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:25,653 INFO: adding 'build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walk-f2pywrappers.f' to sources. 2023-09-26T12:24:25,653 INFO: building extension "mistree.mst.utility_density" sources 2023-09-26T12:24:25,654 INFO: f2py options: [] 2023-09-26T12:24:25,654 INFO: f2py:> build/src.linux-armv7l-3.11/mistree/mst/utility_densitymodule.c 2023-09-26T12:24:25,655 creating build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:25,691 rmbadname1: Replacing "index" with "index_bn". 2023-09-26T12:24:25,699 rmbadname1: Replacing "index" with "index_bn". 2023-09-26T12:24:25,708 rmbadname1: Replacing "index" with "index_bn". 2023-09-26T12:24:25,718 rmbadname1: Replacing "index" with "index_bn". 2023-09-26T12:24:25,924 Reading fortran codes... 2023-09-26T12:24:25,924 Reading file 'mistree/mst/utility_density.f90' (format:free) 2023-09-26T12:24:25,925 Post-processing... 2023-09-26T12:24:25,925 Block: utility_density 2023-09-26T12:24:25,926 Block: get_counts_2d 2023-09-26T12:24:25,926 Block: get_counts_3d 2023-09-26T12:24:25,927 Block: get_param_2d 2023-09-26T12:24:25,928 Block: get_param_3d 2023-09-26T12:24:25,929 Applying post-processing hooks... 2023-09-26T12:24:25,929 character_backward_compatibility_hook 2023-09-26T12:24:25,929 Post-processing (stage 2)... 2023-09-26T12:24:25,930 Building modules... 2023-09-26T12:24:25,930 Building module "utility_density"... 2023-09-26T12:24:25,931 Generating possibly empty wrappers" 2023-09-26T12:24:25,931 Maybe empty "utility_density-f2pywrappers.f" 2023-09-26T12:24:25,931 Constructing wrapper function "get_counts_2d"... 2023-09-26T12:24:25,932 counts = get_counts_2d(x,y,dx,length,length_of_grid,[length_of_points]) 2023-09-26T12:24:25,932 Generating possibly empty wrappers" 2023-09-26T12:24:25,933 Maybe empty "utility_density-f2pywrappers.f" 2023-09-26T12:24:25,933 Constructing wrapper function "get_counts_3d"... 2023-09-26T12:24:25,934 counts = get_counts_3d(x,y,z,dx,length,length_of_grid,[length_of_points]) 2023-09-26T12:24:25,934 Generating possibly empty wrappers" 2023-09-26T12:24:25,935 Maybe empty "utility_density-f2pywrappers.f" 2023-09-26T12:24:25,935 Constructing wrapper function "get_param_2d"... 2023-09-26T12:24:25,935 mean_param = get_param_2d(x_param,y_param,param,dx,length,length_of_grid,[length_of_param]) 2023-09-26T12:24:25,936 Generating possibly empty wrappers" 2023-09-26T12:24:25,936 Maybe empty "utility_density-f2pywrappers.f" 2023-09-26T12:24:25,937 Constructing wrapper function "get_param_3d"... 2023-09-26T12:24:25,937 mean_param = get_param_3d(x_param,y_param,z_param,param,dx,length,length_of_grid,[length_of_param]) 2023-09-26T12:24:25,937 Wrote C/API module "utility_density" to file "build/src.linux-armv7l-3.11/mistree/mst/utility_densitymodule.c" 2023-09-26T12:24:25,938 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.c' to sources. 2023-09-26T12:24:25,939 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst' to include_dirs. 2023-09-26T12:24:25,939 creating build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:25,940 copying /usr/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:25,940 copying /usr/local/lib/python3.11/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:25,941 INFO: adding 'build/src.linux-armv7l-3.11/mistree/mst/utility_density-f2pywrappers.f' to sources. 2023-09-26T12:24:25,941 INFO: building extension "mistree.mst.utility_mst" sources 2023-09-26T12:24:25,942 INFO: f2py options: [] 2023-09-26T12:24:25,943 INFO: f2py:> build/src.linux-armv7l-3.11/mistree/mst/utility_mstmodule.c 2023-09-26T12:24:26,015 Reading fortran codes... 2023-09-26T12:24:26,015 Reading file 'mistree/mst/utility_mst.f90' (format:free) 2023-09-26T12:24:26,016 Post-processing... 2023-09-26T12:24:26,016 Block: utility_mst 2023-09-26T12:24:26,017 Block: get_degree_for_index 2023-09-26T12:24:26,017 Applying post-processing hooks... 2023-09-26T12:24:26,018 character_backward_compatibility_hook 2023-09-26T12:24:26,019 Post-processing (stage 2)... 2023-09-26T12:24:26,019 Building modules... 2023-09-26T12:24:26,020 Building module "utility_mst"... 2023-09-26T12:24:26,020 Generating possibly empty wrappers" 2023-09-26T12:24:26,021 Maybe empty "utility_mst-f2pywrappers.f" 2023-09-26T12:24:26,021 Constructing wrapper function "get_degree_for_index"... 2023-09-26T12:24:26,022 degree = get_degree_for_index(index1,index2,number_of_nodes,[number_of_edges]) 2023-09-26T12:24:26,022 Wrote C/API module "utility_mst" to file "build/src.linux-armv7l-3.11/mistree/mst/utility_mstmodule.c" 2023-09-26T12:24:26,023 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.c' to sources. 2023-09-26T12:24:26,024 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst' to include_dirs. 2023-09-26T12:24:26,024 INFO: adding 'build/src.linux-armv7l-3.11/mistree/mst/utility_mst-f2pywrappers.f' to sources. 2023-09-26T12:24:26,025 INFO: build_src: building npy-pkg config files 2023-09-26T12:24:26,025 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T12:24:26,026 !! 2023-09-26T12:24:26,026 ******************************************************************************** 2023-09-26T12:24:26,027 Please avoid running ``setup.py`` directly. 2023-09-26T12:24:26,027 Instead, use pypa/build, pypa/installer or other 2023-09-26T12:24:26,027 standards-based tools. 2023-09-26T12:24:26,028 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T12:24:26,029 ******************************************************************************** 2023-09-26T12:24:26,029 !! 2023-09-26T12:24:26,030 self.initialize_options() 2023-09-26T12:24:26,044 creating /tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info 2023-09-26T12:24:26,068 writing /tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/PKG-INFO 2023-09-26T12:24:26,071 writing dependency_links to /tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/dependency_links.txt 2023-09-26T12:24:26,073 writing requirements to /tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/requires.txt 2023-09-26T12:24:26,074 writing top-level names to /tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/top_level.txt 2023-09-26T12:24:26,075 writing manifest file '/tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/SOURCES.txt' 2023-09-26T12:24:26,081 /usr/local/lib/python3.11/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2023-09-26T12:24:26,082 !! 2023-09-26T12:24:26,083 ******************************************************************************** 2023-09-26T12:24:26,083 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2023-09-26T12:24:26,084 Please extend command classes from setuptools instead of distutils. 2023-09-26T12:24:26,085 See https://peps.python.org/pep-0632/ for details. 2023-09-26T12:24:26,088 ******************************************************************************** 2023-09-26T12:24:26,089 !! 2023-09-26T12:24:26,090 self._add_data_files(self._safe_data_files(build_py)) 2023-09-26T12:24:26,090 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2023-09-26T12:24:26,091 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2023-09-26T12:24:26,118 reading manifest file '/tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/SOURCES.txt' 2023-09-26T12:24:26,119 adding license file 'LICENSE.txt' 2023-09-26T12:24:26,122 writing manifest file '/tmp/pip-pip-egg-info-y0rg5n1x/mistree.egg-info/SOURCES.txt' 2023-09-26T12:24:26,296 Preparing metadata (setup.py): finished with status 'done' 2023-09-26T12:24:26,300 Source in /tmp/pip-wheel-87hsi3ky/mistree_774efa057b834ab2af33d6c09e0ec5e3 has version 1.2.2, which satisfies requirement mistree==1.2.2 from https://files.pythonhosted.org/packages/65/98/a2c29e47150eaf9ca5f86ed82bcea19696bdb11aa276b3d1e33223343826/mistree-1.2.2.tar.gz 2023-09-26T12:24:26,301 Removed mistree==1.2.2 from https://files.pythonhosted.org/packages/65/98/a2c29e47150eaf9ca5f86ed82bcea19696bdb11aa276b3d1e33223343826/mistree-1.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-7mi3jxto' 2023-09-26T12:24:26,307 Created temporary directory: /tmp/pip-unpack-_f9xttfz 2023-09-26T12:24:26,308 Created temporary directory: /tmp/pip-unpack-wzqhnx32 2023-09-26T12:24:26,316 Building wheels for collected packages: mistree 2023-09-26T12:24:26,319 Created temporary directory: /tmp/pip-wheel-vm1podh_ 2023-09-26T12:24:26,320 Building wheel for mistree (setup.py): started 2023-09-26T12:24:26,322 Destination directory: /tmp/pip-wheel-vm1podh_ 2023-09-26T12:24:26,322 Running command python setup.py bdist_wheel 2023-09-26T12:24:26,966 /tmp/pip-wheel-87hsi3ky/mistree_774efa057b834ab2af33d6c09e0ec5e3/setup.py:4: DeprecationWarning: 2023-09-26T12:24:26,966 `numpy.distutils` is deprecated since NumPy 1.23.0, as a result 2023-09-26T12:24:26,967 of the deprecation of `distutils` itself. It will be removed for 2023-09-26T12:24:26,967 Python >= 3.12. For older Python versions it will remain present. 2023-09-26T12:24:26,968 It is recommended to use `setuptools < 60.0` for those Python versions. 2023-09-26T12:24:26,968 For more details, see: 2023-09-26T12:24:26,969 https://numpy.org/devdocs/reference/distutils_status_migration.html 2023-09-26T12:24:26,971 from numpy.distutils.core import setup, Extension 2023-09-26T12:24:27,929 running bdist_wheel 2023-09-26T12:24:27,952 running build 2023-09-26T12:24:27,952 running config_cc 2023-09-26T12:24:27,953 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2023-09-26T12:24:27,953 running config_fc 2023-09-26T12:24:27,954 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2023-09-26T12:24:27,954 running build_src 2023-09-26T12:24:27,955 INFO: build_src 2023-09-26T12:24:27,955 INFO: building extension "mistree.levy_flight.utility_random_walk" sources 2023-09-26T12:24:27,956 INFO: f2py options: [] 2023-09-26T12:24:27,956 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight/fortranobject.c' to sources. 2023-09-26T12:24:27,957 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight' to include_dirs. 2023-09-26T12:24:28,053 INFO: adding 'build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walk-f2pywrappers.f' to sources. 2023-09-26T12:24:28,054 INFO: building extension "mistree.mst.utility_density" sources 2023-09-26T12:24:28,055 INFO: f2py options: [] 2023-09-26T12:24:28,055 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.c' to sources. 2023-09-26T12:24:28,056 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst' to include_dirs. 2023-09-26T12:24:28,057 INFO: adding 'build/src.linux-armv7l-3.11/mistree/mst/utility_density-f2pywrappers.f' to sources. 2023-09-26T12:24:28,057 INFO: building extension "mistree.mst.utility_mst" sources 2023-09-26T12:24:28,058 INFO: f2py options: [] 2023-09-26T12:24:28,058 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.c' to sources. 2023-09-26T12:24:28,059 INFO: adding 'build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst' to include_dirs. 2023-09-26T12:24:28,060 INFO: adding 'build/src.linux-armv7l-3.11/mistree/mst/utility_mst-f2pywrappers.f' to sources. 2023-09-26T12:24:28,060 INFO: build_src: building npy-pkg config files 2023-09-26T12:24:28,061 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T12:24:28,061 !! 2023-09-26T12:24:28,062 ******************************************************************************** 2023-09-26T12:24:28,063 Please avoid running ``setup.py`` directly. 2023-09-26T12:24:28,063 Instead, use pypa/build, pypa/installer or other 2023-09-26T12:24:28,064 standards-based tools. 2023-09-26T12:24:28,065 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T12:24:28,066 ******************************************************************************** 2023-09-26T12:24:28,067 !! 2023-09-26T12:24:28,067 self.initialize_options() 2023-09-26T12:24:28,078 running build_py 2023-09-26T12:24:28,080 creating build/lib.linux-armv7l-cpython-311 2023-09-26T12:24:28,080 creating build/lib.linux-armv7l-cpython-311/mistree 2023-09-26T12:24:28,081 copying mistree/__init__.py -> build/lib.linux-armv7l-cpython-311/mistree 2023-09-26T12:24:28,084 creating build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,085 copying mistree/mst/__init__.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,086 copying mistree/mst/scale_cut.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,088 copying mistree/mst/get_mst_class.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,090 copying mistree/mst/tomo.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,092 copying mistree/mst/plot_mst.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,095 copying mistree/mst/construct.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,096 copying mistree/mst/partition.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,098 copying mistree/mst/branches.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,100 copying mistree/mst/stats.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,102 copying mistree/mst/graph.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,104 copying mistree/mst/hist_mst.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,106 copying mistree/mst/density.py -> build/lib.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:28,108 creating build/lib.linux-armv7l-cpython-311/mistree/coordinates 2023-09-26T12:24:28,109 copying mistree/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-311/mistree/coordinates 2023-09-26T12:24:28,111 copying mistree/coordinates/coordinate_utility.py -> build/lib.linux-armv7l-cpython-311/mistree/coordinates 2023-09-26T12:24:28,113 creating build/lib.linux-armv7l-cpython-311/mistree/levy_flight 2023-09-26T12:24:28,114 copying mistree/levy_flight/levy_flight.py -> build/lib.linux-armv7l-cpython-311/mistree/levy_flight 2023-09-26T12:24:28,116 copying mistree/levy_flight/__init__.py -> build/lib.linux-armv7l-cpython-311/mistree/levy_flight 2023-09-26T12:24:28,120 running build_ext 2023-09-26T12:24:28,125 INFO: customize UnixCCompiler 2023-09-26T12:24:28,126 INFO: customize UnixCCompiler using build_ext 2023-09-26T12:24:28,240 INFO: CCompilerOpt.cc_test_cexpr[1097] : testing compiler expression defined(__ARM_ARCH_7__) || defined(__ARM_ARCH_7A__) 2023-09-26T12:24:28,242 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:28,243 creating /tmp/tmp2odq2q55/tmp 2023-09-26T12:24:28,243 creating /tmp/tmp2odq2q55/tmp/tmp2odq2q55 2023-09-26T12:24:28,244 INFO: compile options: '-I/usr/include/python3.11 -c' 2023-09-26T12:24:28,313 WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c /tmp/tmp2odq2q55/npy_dist_test_cexpr.c -o /tmp/tmp2odq2q55/tmp/tmp2odq2q55/npy_dist_test_cexpr.o -MMD -MF /tmp/tmp2odq2q55/tmp/tmp2odq2q55/npy_dist_test_cexpr.o.d) failed with exit status 1 output -> 2023-09-26T12:24:28,314 /tmp/tmp2odq2q55/npy_dist_test_cexpr.c:2:6: error: #error "unsupported expression" 2023-09-26T12:24:28,314 2 | #error "unsupported expression" 2023-09-26T12:24:28,315 | ^~~~~ 2023-09-26T12:24:28,324 WARN: CCompilerOpt.cc_test_cexpr[1108] : testing failed 2023-09-26T12:24:28,336 WARN: CCompilerOpt.__init__[1024] : unable to detect CPU architecture which lead to disable the optimization. check dist_info:<< 2023-09-26T12:24:28,336 ('linux-armv7l', 'arm-linux-gnueabihf-gcc', '-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2') 2023-09-26T12:24:28,337 >> 2023-09-26T12:24:28,347 INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-march=native) 2023-09-26T12:24:28,347 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:28,348 creating /tmp/tmp2odq2q55/usr 2023-09-26T12:24:28,349 creating /tmp/tmp2odq2q55/usr/local 2023-09-26T12:24:28,349 creating /tmp/tmp2odq2q55/usr/local/lib 2023-09-26T12:24:28,350 creating /tmp/tmp2odq2q55/usr/local/lib/python3.11 2023-09-26T12:24:28,350 creating /tmp/tmp2odq2q55/usr/local/lib/python3.11/dist-packages 2023-09-26T12:24:28,351 creating /tmp/tmp2odq2q55/usr/local/lib/python3.11/dist-packages/numpy 2023-09-26T12:24:28,351 creating /tmp/tmp2odq2q55/usr/local/lib/python3.11/dist-packages/numpy/distutils 2023-09-26T12:24:28,351 creating /tmp/tmp2odq2q55/usr/local/lib/python3.11/dist-packages/numpy/distutils/checks 2023-09-26T12:24:28,352 INFO: compile options: '-I/usr/include/python3.11 -c' 2023-09-26T12:24:28,352 extra options: '-march=native' 2023-09-26T12:24:28,418 INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-O3) 2023-09-26T12:24:28,419 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:28,420 INFO: compile options: '-I/usr/include/python3.11 -c' 2023-09-26T12:24:28,420 extra options: '-O3' 2023-09-26T12:24:28,484 INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-Werror) 2023-09-26T12:24:28,484 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:28,486 INFO: compile options: '-I/usr/include/python3.11 -c' 2023-09-26T12:24:28,486 extra options: '-Werror' 2023-09-26T12:24:28,549 INFO: CCompilerOpt.__init__[1794] : check requested baseline 2023-09-26T12:24:28,559 INFO: CCompilerOpt.__init__[1803] : check requested dispatch-able features 2023-09-26T12:24:28,569 INFO: CCompilerOpt.__init__[1819] : initialize targets groups 2023-09-26T12:24:28,579 INFO: CCompilerOpt.__init__[1821] : parse target group simd_test 2023-09-26T12:24:28,589 INFO: CCompilerOpt._parse_target_tokens[2032] : skip targets (AVX512_SKX VSX4 SSE2 VSX VX (AVX2 FMA3) VSX2 AVX512F FMA4 XOP ASIMD NEON SSE42 VSX3 VXE VXE2) not part of baseline or dispatch-able features 2023-09-26T12:24:28,599 INFO: CCompilerOpt.generate_dispatch_header[2365] : generate CPU dispatch header: (build/src.linux-armv7l-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) 2023-09-26T12:24:28,609 WARN: CCompilerOpt.generate_dispatch_header[2374] : dispatch header dir build/src.linux-armv7l-3.11/numpy/distutils/include does not exist, creating it 2023-09-26T12:24:28,679 INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2023-09-26T12:24:28,680 INFO: customize ArmFlangCompiler 2023-09-26T12:24:28,680 WARN: Could not locate executable armflang 2023-09-26T12:24:28,681 INFO: customize Gnu95FCompiler 2023-09-26T12:24:28,682 INFO: Found executable /usr/bin/gfortran 2023-09-26T12:24:28,701 INFO: customize Gnu95FCompiler 2023-09-26T12:24:28,720 INFO: customize Gnu95FCompiler using build_ext 2023-09-26T12:24:28,721 INFO: building 'mistree.levy_flight.utility_random_walk' extension 2023-09-26T12:24:28,722 INFO: compiling C sources 2023-09-26T12:24:28,722 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:28,723 creating build/temp.linux-armv7l-cpython-311/build 2023-09-26T12:24:28,724 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11 2023-09-26T12:24:28,724 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree 2023-09-26T12:24:28,725 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:28,726 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build 2023-09-26T12:24:28,726 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11 2023-09-26T12:24:28,726 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree 2023-09-26T12:24:28,727 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight 2023-09-26T12:24:28,727 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:28,734 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walkmodule.c 2023-09-26T12:24:28,735 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight/fortranobject.c 2023-09-26T12:24:30,880 INFO: compiling Fortran sources 2023-09-26T12:24:30,881 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:30,881 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:30,882 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:30,882 creating build/temp.linux-armv7l-cpython-311/mistree 2023-09-26T12:24:30,883 creating build/temp.linux-armv7l-cpython-311/mistree/levy_flight 2023-09-26T12:24:30,883 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:30,885 INFO: gfortran:f90: mistree/levy_flight/utility_random_walk.f90 2023-09-26T12:24:31,057 INFO: gfortran:f77: build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walk-f2pywrappers.f 2023-09-26T12:24:31,106 INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walkmodule.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/levy_flight/fortranobject.o build/temp.linux-armv7l-cpython-311/mistree/levy_flight/utility_random_walk.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/levy_flight/utility_random_walk-f2pywrappers.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o build/lib.linux-armv7l-cpython-311/mistree/levy_flight/utility_random_walk.cpython-311-arm-linux-gnueabihf.so 2023-09-26T12:24:31,240 INFO: building 'mistree.mst.utility_density' extension 2023-09-26T12:24:31,241 INFO: compiling C sources 2023-09-26T12:24:31,241 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:31,242 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:31,243 creating build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst 2023-09-26T12:24:31,244 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:31,244 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.cINFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/mistree/mst/utility_densitymodule.c 2023-09-26T12:24:33,323 INFO: compiling Fortran sources 2023-09-26T12:24:33,324 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:33,324 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:33,325 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:33,325 creating build/temp.linux-armv7l-cpython-311/mistree/mst 2023-09-26T12:24:33,326 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:33,326 INFO: gfortran:f90: mistree/mst/utility_density.f90 2023-09-26T12:24:33,820 INFO: gfortran:f77: build/src.linux-armv7l-3.11/mistree/mst/utility_density-f2pywrappers.f 2023-09-26T12:24:33,871 INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/mst/utility_densitymodule.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.o build/temp.linux-armv7l-cpython-311/mistree/mst/utility_density.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/mst/utility_density-f2pywrappers.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o build/lib.linux-armv7l-cpython-311/mistree/mst/utility_density.cpython-311-arm-linux-gnueabihf.so 2023-09-26T12:24:33,999 INFO: building 'mistree.mst.utility_mst' extension 2023-09-26T12:24:34,000 INFO: compiling C sources 2023-09-26T12:24:34,000 INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-09-26T12:24:34,002 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:34,002 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.11/mistree/mst/utility_mstmodule.c 2023-09-26T12:24:34,708 INFO: compiling Fortran sources 2023-09-26T12:24:34,708 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:34,709 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:34,710 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2023-09-26T12:24:34,710 INFO: compile options: '-Ibuild/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' 2023-09-26T12:24:34,711 INFO: gfortran:f90: mistree/mst/utility_mst.f90 2023-09-26T12:24:34,819 INFO: gfortran:f77: build/src.linux-armv7l-3.11/mistree/mst/utility_mst-f2pywrappers.f 2023-09-26T12:24:34,868 INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/mst/utility_mstmodule.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/build/src.linux-armv7l-3.11/mistree/mst/fortranobject.o build/temp.linux-armv7l-cpython-311/mistree/mst/utility_mst.o build/temp.linux-armv7l-cpython-311/build/src.linux-armv7l-3.11/mistree/mst/utility_mst-f2pywrappers.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o build/lib.linux-armv7l-cpython-311/mistree/mst/utility_mst.cpython-311-arm-linux-gnueabihf.so 2023-09-26T12:24:35,019 installing to build/bdist.linux-armv7l/wheel 2023-09-26T12:24:35,019 running install 2023-09-26T12:24:35,042 running install_lib 2023-09-26T12:24:35,069 creating build/bdist.linux-armv7l 2023-09-26T12:24:35,069 creating build/bdist.linux-armv7l/wheel 2023-09-26T12:24:35,070 creating build/bdist.linux-armv7l/wheel/mistree 2023-09-26T12:24:35,072 creating build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,073 copying build/lib.linux-armv7l-cpython-311/mistree/mst/__init__.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,074 copying build/lib.linux-armv7l-cpython-311/mistree/mst/scale_cut.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,076 copying build/lib.linux-armv7l-cpython-311/mistree/mst/get_mst_class.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,080 copying build/lib.linux-armv7l-cpython-311/mistree/mst/utility_mst.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,084 copying build/lib.linux-armv7l-cpython-311/mistree/mst/tomo.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,085 copying build/lib.linux-armv7l-cpython-311/mistree/mst/plot_mst.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,088 copying build/lib.linux-armv7l-cpython-311/mistree/mst/construct.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,090 copying build/lib.linux-armv7l-cpython-311/mistree/mst/partition.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,091 copying build/lib.linux-armv7l-cpython-311/mistree/mst/branches.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,094 copying build/lib.linux-armv7l-cpython-311/mistree/mst/stats.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,096 copying build/lib.linux-armv7l-cpython-311/mistree/mst/graph.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,097 copying build/lib.linux-armv7l-cpython-311/mistree/mst/utility_density.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,102 copying build/lib.linux-armv7l-cpython-311/mistree/mst/hist_mst.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,104 copying build/lib.linux-armv7l-cpython-311/mistree/mst/density.py -> build/bdist.linux-armv7l/wheel/mistree/mst 2023-09-26T12:24:35,105 copying build/lib.linux-armv7l-cpython-311/mistree/__init__.py -> build/bdist.linux-armv7l/wheel/mistree 2023-09-26T12:24:35,108 creating build/bdist.linux-armv7l/wheel/mistree/coordinates 2023-09-26T12:24:35,108 copying build/lib.linux-armv7l-cpython-311/mistree/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/mistree/coordinates 2023-09-26T12:24:35,110 copying build/lib.linux-armv7l-cpython-311/mistree/coordinates/coordinate_utility.py -> build/bdist.linux-armv7l/wheel/mistree/coordinates 2023-09-26T12:24:35,112 creating build/bdist.linux-armv7l/wheel/mistree/levy_flight 2023-09-26T12:24:35,113 copying build/lib.linux-armv7l-cpython-311/mistree/levy_flight/levy_flight.py -> build/bdist.linux-armv7l/wheel/mistree/levy_flight 2023-09-26T12:24:35,115 copying build/lib.linux-armv7l-cpython-311/mistree/levy_flight/__init__.py -> build/bdist.linux-armv7l/wheel/mistree/levy_flight 2023-09-26T12:24:35,117 copying build/lib.linux-armv7l-cpython-311/mistree/levy_flight/utility_random_walk.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/mistree/levy_flight 2023-09-26T12:24:35,121 running install_egg_info 2023-09-26T12:24:35,146 running egg_info 2023-09-26T12:24:35,169 writing mistree.egg-info/PKG-INFO 2023-09-26T12:24:35,172 writing dependency_links to mistree.egg-info/dependency_links.txt 2023-09-26T12:24:35,174 writing requirements to mistree.egg-info/requires.txt 2023-09-26T12:24:35,175 writing top-level names to mistree.egg-info/top_level.txt 2023-09-26T12:24:35,182 /usr/local/lib/python3.11/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. 2023-09-26T12:24:35,183 !! 2023-09-26T12:24:35,184 ******************************************************************************** 2023-09-26T12:24:35,184 Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2023-09-26T12:24:35,185 Please extend command classes from setuptools instead of distutils. 2023-09-26T12:24:35,186 See https://peps.python.org/pep-0632/ for details. 2023-09-26T12:24:35,186 ******************************************************************************** 2023-09-26T12:24:35,187 !! 2023-09-26T12:24:35,187 self._add_data_files(self._safe_data_files(build_py)) 2023-09-26T12:24:35,210 reading manifest file 'mistree.egg-info/SOURCES.txt' 2023-09-26T12:24:35,213 adding license file 'LICENSE.txt' 2023-09-26T12:24:35,215 writing manifest file 'mistree.egg-info/SOURCES.txt' 2023-09-26T12:24:35,217 Copying mistree.egg-info to build/bdist.linux-armv7l/wheel/mistree-1.2.2-py3.11.egg-info 2023-09-26T12:24:35,227 running install_scripts 2023-09-26T12:24:35,227 running install_clib 2023-09-26T12:24:35,228 INFO: customize UnixCCompiler 2023-09-26T12:24:35,279 creating build/bdist.linux-armv7l/wheel/mistree-1.2.2.dist-info/WHEEL 2023-09-26T12:24:35,281 creating '/tmp/pip-wheel-vm1podh_/mistree-1.2.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T12:24:35,284 adding 'mistree/__init__.py' 2023-09-26T12:24:35,285 adding 'mistree/coordinates/__init__.py' 2023-09-26T12:24:35,287 adding 'mistree/coordinates/coordinate_utility.py' 2023-09-26T12:24:35,289 adding 'mistree/levy_flight/__init__.py' 2023-09-26T12:24:35,290 adding 'mistree/levy_flight/levy_flight.py' 2023-09-26T12:24:35,315 adding 'mistree/levy_flight/utility_random_walk.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T12:24:35,318 adding 'mistree/mst/__init__.py' 2023-09-26T12:24:35,320 adding 'mistree/mst/branches.py' 2023-09-26T12:24:35,322 adding 'mistree/mst/construct.py' 2023-09-26T12:24:35,323 adding 'mistree/mst/density.py' 2023-09-26T12:24:35,326 adding 'mistree/mst/get_mst_class.py' 2023-09-26T12:24:35,327 adding 'mistree/mst/graph.py' 2023-09-26T12:24:35,329 adding 'mistree/mst/hist_mst.py' 2023-09-26T12:24:35,330 adding 'mistree/mst/partition.py' 2023-09-26T12:24:35,333 adding 'mistree/mst/plot_mst.py' 2023-09-26T12:24:35,335 adding 'mistree/mst/scale_cut.py' 2023-09-26T12:24:35,336 adding 'mistree/mst/stats.py' 2023-09-26T12:24:35,337 adding 'mistree/mst/tomo.py' 2023-09-26T12:24:35,366 adding 'mistree/mst/utility_density.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T12:24:35,389 adding 'mistree/mst/utility_mst.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T12:24:35,392 adding 'mistree-1.2.2.dist-info/LICENSE.txt' 2023-09-26T12:24:35,393 adding 'mistree-1.2.2.dist-info/METADATA' 2023-09-26T12:24:35,394 adding 'mistree-1.2.2.dist-info/WHEEL' 2023-09-26T12:24:35,395 adding 'mistree-1.2.2.dist-info/top_level.txt' 2023-09-26T12:24:35,396 adding 'mistree-1.2.2.dist-info/RECORD' 2023-09-26T12:24:35,400 removing build/bdist.linux-armv7l/wheel 2023-09-26T12:24:35,407 INFO: 2023-09-26T12:24:35,408 ########### EXT COMPILER OPTIMIZATION ########### 2023-09-26T12:24:35,408 INFO: Platform : 2023-09-26T12:24:35,409 Architecture: unsupported 2023-09-26T12:24:35,410 Compiler : gcc 2023-09-26T12:24:35,411 CPU baseline : 2023-09-26T12:24:35,411 Requested : optimization disabled 2023-09-26T12:24:35,412 Enabled : none 2023-09-26T12:24:35,412 Flags : none 2023-09-26T12:24:35,413 Extra checks: none 2023-09-26T12:24:35,413 Requested : optimization disabled 2023-09-26T12:24:35,414 CPU dispatch : 2023-09-26T12:24:35,415 Enabled : none 2023-09-26T12:24:35,415 Generated : none 2023-09-26T12:24:35,416 INFO: CCompilerOpt.cache_flush[863] : write cache to path -> /tmp/pip-wheel-87hsi3ky/mistree_774efa057b834ab2af33d6c09e0ec5e3/build/temp.linux-armv7l-cpython-311/ccompiler_opt_cache_ext.py 2023-09-26T12:24:35,600 Building wheel for mistree (setup.py): finished with status 'done' 2023-09-26T12:24:35,605 Created wheel for mistree: filename=mistree-1.2.2-cp311-cp311-linux_armv7l.whl size=211992 sha256=2a68c97d0b6d608370ffa86ef1e031f8c1ec85ce8eb8b0a70c1f586b4918f8b2 2023-09-26T12:24:35,606 Stored in directory: /tmp/pip-ephem-wheel-cache-iru0qbdj/wheels/c5/e2/48/6b355f4be19c66d65122fc2d5b3145525c61bad6175ee54e81 2023-09-26T12:24:35,617 Successfully built mistree 2023-09-26T12:24:35,628 Removed build tracker: '/tmp/pip-build-tracker-7mi3jxto'