2023-09-26T19:05:44,840 Created temporary directory: /tmp/pip-build-tracker-7l3esmmk 2023-09-26T19:05:44,842 Initialized build tracking at /tmp/pip-build-tracker-7l3esmmk 2023-09-26T19:05:44,842 Created build tracker: /tmp/pip-build-tracker-7l3esmmk 2023-09-26T19:05:44,843 Entered build tracker: /tmp/pip-build-tracker-7l3esmmk 2023-09-26T19:05:44,843 Created temporary directory: /tmp/pip-wheel-_yjypp2n 2023-09-26T19:05:44,846 Created temporary directory: /tmp/pip-ephem-wheel-cache-pdwnhcm9 2023-09-26T19:05:44,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-26T19:05:44,873 2 location(s) to search for versions of pybedtools: 2023-09-26T19:05:44,873 * https://pypi.org/simple/pybedtools/ 2023-09-26T19:05:44,873 * https://www.piwheels.org/simple/pybedtools/ 2023-09-26T19:05:44,874 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2023-09-26T19:05:44,874 Getting page https://pypi.org/simple/pybedtools/ 2023-09-26T19:05:44,876 Found index url https://pypi.org/simple/ 2023-09-26T19:05:45,094 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2023-09-26T19:05:45,100 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2023-09-26T19:05:45,100 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2023-09-26T19:05:45,101 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2023-09-26T19:05:45,102 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2023-09-26T19:05:45,102 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2023-09-26T19:05:45,103 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2023-09-26T19:05:45,104 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2023-09-26T19:05:45,105 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2023-09-26T19:05:45,105 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2023-09-26T19:05:45,106 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2023-09-26T19:05:45,107 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2023-09-26T19:05:45,108 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2023-09-26T19:05:45,108 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2023-09-26T19:05:45,109 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2023-09-26T19:05:45,110 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2023-09-26T19:05:45,111 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2023-09-26T19:05:45,111 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2023-09-26T19:05:45,112 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2023-09-26T19:05:45,112 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2023-09-26T19:05:45,113 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2023-09-26T19:05:45,113 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2023-09-26T19:05:45,114 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2023-09-26T19:05:45,114 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2023-09-26T19:05:45,115 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2023-09-26T19:05:45,116 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2023-09-26T19:05:45,116 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2023-09-26T19:05:45,117 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2023-09-26T19:05:45,118 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2023-09-26T19:05:45,118 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2023-09-26T19:05:45,119 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2023-09-26T19:05:45,120 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2023-09-26T19:05:45,120 Getting page https://www.piwheels.org/simple/pybedtools/ 2023-09-26T19:05:45,122 Found index url https://www.piwheels.org/simple/ 2023-09-26T19:05:45,282 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2023-09-26T19:05:45,300 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,306 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,307 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,307 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,308 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,309 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,309 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,310 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,311 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,311 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,312 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,312 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,313 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,314 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,314 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,315 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,316 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,316 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,317 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,317 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,318 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,318 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,319 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,319 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,320 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,321 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,321 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv7l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,322 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv6l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,323 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,324 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,324 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv6l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,325 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv7l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,325 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv6l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,326 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv7l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,326 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv7l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,327 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv6l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,327 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv6l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,328 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv7l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,328 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv6l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,329 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv7l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,330 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,330 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,331 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,332 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,332 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv6l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,332 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv7l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,333 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,333 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,334 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv6l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,335 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv7l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,335 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv6l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,336 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv7l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,336 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv6l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,337 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv7l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,337 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv7l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,338 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv6l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,339 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv6l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,339 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv7l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,340 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv6l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,340 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv7l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,341 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv7l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,341 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv6l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,342 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv6l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,342 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv7l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,343 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,343 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv6l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,344 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-26T19:05:45,345 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2023-09-26T19:05:45,345 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2023-09-26T19:05:45,367 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2023-09-26T19:05:45,386 Collecting pybedtools==0.9.1 2023-09-26T19:05:45,388 Created temporary directory: /tmp/pip-unpack-87o48xqn 2023-09-26T19:05:45,539 Downloading pybedtools-0.9.1.tar.gz (12.5 MB) 2023-09-26T19:05:52,338 Added pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-7l3esmmk' 2023-09-26T19:05:52,342 Running setup.py (path:/tmp/pip-wheel-_yjypp2n/pybedtools_b0c1cbdd2a9f4d219d7a2f8a550ea819/setup.py) egg_info for package pybedtools 2023-09-26T19:05:52,343 Created temporary directory: /tmp/pip-pip-egg-info-d1kpnho7 2023-09-26T19:05:52,344 Preparing metadata (setup.py): started 2023-09-26T19:05:52,346 Running command python setup.py egg_info 2023-09-26T19:05:53,017 /tmp/pip-wheel-_yjypp2n/pybedtools_b0c1cbdd2a9f4d219d7a2f8a550ea819/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-26T19:05:53,018 import pkg_resources 2023-09-26T19:05:53,300 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2023-09-26T19:05:53,301 warnings.warn(msg) 2023-09-26T19:05:53,470 running egg_info 2023-09-26T19:05:53,472 creating /tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info 2023-09-26T19:05:53,496 writing /tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/PKG-INFO 2023-09-26T19:05:53,501 writing dependency_links to /tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/dependency_links.txt 2023-09-26T19:05:53,503 writing requirements to /tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/requires.txt 2023-09-26T19:05:53,504 writing top-level names to /tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/top_level.txt 2023-09-26T19:05:53,506 writing manifest file '/tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:53,574 reading manifest file '/tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:53,576 adding license file 'LICENSE.txt' 2023-09-26T19:05:53,581 writing manifest file '/tmp/pip-pip-egg-info-d1kpnho7/pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:53,697 Preparing metadata (setup.py): finished with status 'done' 2023-09-26T19:05:53,701 Source in /tmp/pip-wheel-_yjypp2n/pybedtools_b0c1cbdd2a9f4d219d7a2f8a550ea819 has version 0.9.1, which satisfies requirement pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz 2023-09-26T19:05:53,702 Removed pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-7l3esmmk' 2023-09-26T19:05:53,707 Created temporary directory: /tmp/pip-unpack-7lbs8uci 2023-09-26T19:05:53,708 Created temporary directory: /tmp/pip-unpack-qd1v2fhj 2023-09-26T19:05:53,713 Building wheels for collected packages: pybedtools 2023-09-26T19:05:53,718 Created temporary directory: /tmp/pip-wheel-8cdu0svr 2023-09-26T19:05:53,718 Building wheel for pybedtools (setup.py): started 2023-09-26T19:05:53,719 Destination directory: /tmp/pip-wheel-8cdu0svr 2023-09-26T19:05:53,720 Running command python setup.py bdist_wheel 2023-09-26T19:05:54,335 /tmp/pip-wheel-_yjypp2n/pybedtools_b0c1cbdd2a9f4d219d7a2f8a550ea819/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-26T19:05:54,336 import pkg_resources 2023-09-26T19:05:54,601 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2023-09-26T19:05:54,601 warnings.warn(msg) 2023-09-26T19:05:54,754 running bdist_wheel 2023-09-26T19:05:54,777 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-26T19:05:54,802 running build 2023-09-26T19:05:54,803 running build_py 2023-09-26T19:05:54,829 creating build 2023-09-26T19:05:54,830 creating build/lib.linux-armv7l-cpython-311 2023-09-26T19:05:54,831 creating build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,832 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,834 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,835 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,838 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,840 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,842 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,843 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,847 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,848 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,850 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,852 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:54,857 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,858 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,860 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,862 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,864 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,866 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,868 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,869 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,871 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,872 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,875 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,877 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,879 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,880 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-26T19:05:54,883 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,884 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,887 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,889 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,891 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,892 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,895 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,897 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-26T19:05:54,899 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:54,900 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:54,902 running egg_info 2023-09-26T19:05:54,933 creating pybedtools.egg-info 2023-09-26T19:05:54,960 writing pybedtools.egg-info/PKG-INFO 2023-09-26T19:05:54,963 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2023-09-26T19:05:54,965 writing requirements to pybedtools.egg-info/requires.txt 2023-09-26T19:05:54,966 writing top-level names to pybedtools.egg-info/top_level.txt 2023-09-26T19:05:54,967 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:55,006 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:55,007 adding license file 'LICENSE.txt' 2023-09-26T19:05:55,012 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-26T19:05:55,015 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2023-09-26T19:05:55,015 !! 2023-09-26T19:05:55,016 ******************************************************************************** 2023-09-26T19:05:55,016 ############################ 2023-09-26T19:05:55,017 # Package would be ignored # 2023-09-26T19:05:55,017 ############################ 2023-09-26T19:05:55,018 Python recognizes 'pybedtools.include' as an importable package[^1], 2023-09-26T19:05:55,018 but it is absent from setuptools' `packages` configuration. 2023-09-26T19:05:55,019 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-26T19:05:55,020 package, please make sure that 'pybedtools.include' is explicitly added 2023-09-26T19:05:55,020 to the `packages` configuration field. 2023-09-26T19:05:55,021 Alternatively, you can also rely on setuptools' discovery methods 2023-09-26T19:05:55,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-26T19:05:55,022 instead of `find_packages(...)`/`find:`). 2023-09-26T19:05:55,023 You can read more about "package discovery" on setuptools documentation page: 2023-09-26T19:05:55,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-26T19:05:55,024 If you don't want 'pybedtools.include' to be distributed and are 2023-09-26T19:05:55,025 already explicitly excluding 'pybedtools.include' via 2023-09-26T19:05:55,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-26T19:05:55,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-26T19:05:55,026 combination with a more fine grained `package-data` configuration. 2023-09-26T19:05:55,027 You can read more about "package data files" on setuptools documentation page: 2023-09-26T19:05:55,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-26T19:05:55,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-26T19:05:55,030 even if it does not contain any `.py` files. 2023-09-26T19:05:55,031 On the other hand, currently there is no concept of package data 2023-09-26T19:05:55,031 directory, all directories are treated like packages. 2023-09-26T19:05:55,032 ******************************************************************************** 2023-09-26T19:05:55,033 !! 2023-09-26T19:05:55,041 check.warn(importable) 2023-09-26T19:05:55,044 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,046 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,048 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,050 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,053 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,065 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,068 creating build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-26T19:05:55,069 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-26T19:05:55,072 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-26T19:05:55,074 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-26T19:05:55,076 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,117 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,119 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,123 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,125 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,130 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,141 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,144 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,146 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,148 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,150 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,153 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,157 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,160 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,162 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,164 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,166 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,169 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,171 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,173 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,176 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,178 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,180 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,184 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,187 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,193 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,195 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,198 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,200 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,204 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,209 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,212 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,216 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,218 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,220 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,223 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,225 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,227 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,229 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,232 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,234 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,236 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,241 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,243 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,246 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,248 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,250 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,253 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,255 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,258 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,260 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,263 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,314 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,316 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,319 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,322 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,325 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,467 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,470 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,474 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,477 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,483 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,486 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,488 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,490 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,493 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,495 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,506 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,509 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,511 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,513 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-26T19:05:55,543 running build_ext 2023-09-26T19:05:55,548 building 'pybedtools.cbedtools' extension 2023-09-26T19:05:55,549 creating build/temp.linux-armv7l-cpython-311 2023-09-26T19:05:55,549 creating build/temp.linux-armv7l-cpython-311/pybedtools 2023-09-26T19:05:55,550 creating build/temp.linux-armv7l-cpython-311/pybedtools/include 2023-09-26T19:05:55,551 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2023-09-26T19:05:58,044 In file included from pybedtools/cbedtools.cpp:802: 2023-09-26T19:05:58,045 pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2023-09-26T19:05:58,046 pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2023-09-26T19:05:58,047 92 | for (register short i = 0; i < _binLevels; ++i) { 2023-09-26T19:05:58,048 | ^ 2023-09-26T19:06:22,170 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2023-09-26T19:06:23,939 In file included from pybedtools/include/bedFile.cpp:12: 2023-09-26T19:06:23,939 pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2023-09-26T19:06:23,940 pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2023-09-26T19:06:23,941 92 | for (register short i = 0; i < _binLevels; ++i) { 2023-09-26T19:06:23,942 | ^ 2023-09-26T19:06:30,339 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2023-09-26T19:06:32,031 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2023-09-26T19:06:33,824 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so 2023-09-26T19:06:34,186 building 'pybedtools.featurefuncs' extension 2023-09-26T19:06:34,186 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o 2023-09-26T19:06:36,572 In file included from pybedtools/featurefuncs.cpp:802: 2023-09-26T19:06:36,572 pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2023-09-26T19:06:36,573 pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2023-09-26T19:06:36,574 92 | for (register short i = 0; i < _binLevels; ++i) { 2023-09-26T19:06:36,574 | ^ 2023-09-26T19:06:46,506 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o 2023-09-26T19:06:48,285 In file included from pybedtools/include/bedFile.cpp:12: 2023-09-26T19:06:48,285 pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2023-09-26T19:06:48,286 pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2023-09-26T19:06:48,287 92 | for (register short i = 0; i < _binLevels; ++i) { 2023-09-26T19:06:48,287 | ^ 2023-09-26T19:06:54,689 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o 2023-09-26T19:06:56,382 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o 2023-09-26T19:06:58,190 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-311/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-311/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lz -o build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so 2023-09-26T19:06:58,542 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-26T19:06:58,543 !! 2023-09-26T19:06:58,544 ******************************************************************************** 2023-09-26T19:06:58,545 Please avoid running ``setup.py`` directly. 2023-09-26T19:06:58,545 Instead, use pypa/build, pypa/installer or other 2023-09-26T19:06:58,546 standards-based tools. 2023-09-26T19:06:58,547 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-26T19:06:58,548 ******************************************************************************** 2023-09-26T19:06:58,549 !! 2023-09-26T19:06:58,549 self.initialize_options() 2023-09-26T19:06:58,567 installing to build/bdist.linux-armv7l/wheel 2023-09-26T19:06:58,567 running install 2023-09-26T19:06:58,591 running install_lib 2023-09-26T19:06:58,615 creating build/bdist.linux-armv7l 2023-09-26T19:06:58,616 creating build/bdist.linux-armv7l/wheel 2023-09-26T19:06:58,618 creating build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,619 copying build/lib.linux-armv7l-cpython-311/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,621 copying build/lib.linux-armv7l-cpython-311/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,624 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2023-09-26T19:06:58,624 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-09-26T19:06:58,627 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-09-26T19:06:58,629 copying build/lib.linux-armv7l-cpython-311/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-09-26T19:06:58,631 copying build/lib.linux-armv7l-cpython-311/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,634 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,643 copying build/lib.linux-armv7l-cpython-311/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,645 copying build/lib.linux-armv7l-cpython-311/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,647 copying build/lib.linux-armv7l-cpython-311/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,649 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,651 copying build/lib.linux-armv7l-cpython-311/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:58,654 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,655 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,658 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,661 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,663 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,665 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,667 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,669 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,672 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,674 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,677 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:58,681 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,682 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,715 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,717 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,720 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,722 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,726 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,734 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,736 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,738 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,740 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,741 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,743 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,746 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,749 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,751 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,753 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,754 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,756 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,758 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,760 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,762 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,764 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/1000genomes-example.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,766 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,769 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,772 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,777 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,779 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,781 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,783 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,785 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,790 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,793 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,796 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,798 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,799 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,801 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,804 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,805 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,807 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,809 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,811 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,813 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,816 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,818 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,819 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,821 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,823 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,825 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,827 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,830 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,832 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,834 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,881 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,883 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,886 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,888 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,891 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:58,893 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,046 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,049 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,052 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,054 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,059 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,061 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,063 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,065 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,067 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,069 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,078 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,080 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,083 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,085 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-09-26T19:06:59,090 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:59,093 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:59,095 copying build/lib.linux-armv7l-cpython-311/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-09-26T19:06:59,097 copying build/lib.linux-armv7l-cpython-311/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,105 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,106 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,109 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,112 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,114 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,117 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,120 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,123 copying build/lib.linux-armv7l-cpython-311/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-09-26T19:06:59,125 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,173 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,189 copying build/lib.linux-armv7l-cpython-311/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,192 copying build/lib.linux-armv7l-cpython-311/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,194 copying build/lib.linux-armv7l-cpython-311/pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,219 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,221 copying build/lib.linux-armv7l-cpython-311/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,224 copying build/lib.linux-armv7l-cpython-311/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,228 copying build/lib.linux-armv7l-cpython-311/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-09-26T19:06:59,230 running install_egg_info 2023-09-26T19:06:59,262 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/pybedtools-0.9.1-py3.11.egg-info 2023-09-26T19:06:59,275 running install_scripts 2023-09-26T19:06:59,325 creating build/bdist.linux-armv7l/wheel/pybedtools-0.9.1.dist-info/WHEEL 2023-09-26T19:06:59,327 creating '/tmp/pip-wheel-8cdu0svr/pybedtools-0.9.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-26T19:06:59,330 adding 'pybedtools/_Window.pyx' 2023-09-26T19:06:59,332 adding 'pybedtools/__init__.py' 2023-09-26T19:06:59,350 adding 'pybedtools/bedtool.py' 2023-09-26T19:06:59,420 adding 'pybedtools/cbedtools.cpp' 2023-09-26T19:06:59,907 adding 'pybedtools/cbedtools.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T19:06:59,927 adding 'pybedtools/cbedtools.pxd' 2023-09-26T19:06:59,931 adding 'pybedtools/cbedtools.pyx' 2023-09-26T19:06:59,967 adding 'pybedtools/featurefuncs.cpp' 2023-09-26T19:07:00,250 adding 'pybedtools/featurefuncs.cpython-311-arm-linux-gnueabihf.so' 2023-09-26T19:07:00,263 adding 'pybedtools/featurefuncs.pyx' 2023-09-26T19:07:00,264 adding 'pybedtools/filenames.py' 2023-09-26T19:07:00,273 adding 'pybedtools/genome_registry.py' 2023-09-26T19:07:00,277 adding 'pybedtools/helpers.py' 2023-09-26T19:07:00,278 adding 'pybedtools/logger.py' 2023-09-26T19:07:00,280 adding 'pybedtools/parallel.py' 2023-09-26T19:07:00,281 adding 'pybedtools/paths.py' 2023-09-26T19:07:00,283 adding 'pybedtools/settings.py' 2023-09-26T19:07:00,284 adding 'pybedtools/stats.py' 2023-09-26T19:07:00,285 adding 'pybedtools/version.py' 2023-09-26T19:07:00,287 adding 'pybedtools/contrib/__init__.py' 2023-09-26T19:07:00,288 adding 'pybedtools/contrib/bigbed.py' 2023-09-26T19:07:00,290 adding 'pybedtools/contrib/bigwig.py' 2023-09-26T19:07:00,291 adding 'pybedtools/contrib/intersection_matrix.py' 2023-09-26T19:07:00,294 adding 'pybedtools/contrib/long_range_interaction.py' 2023-09-26T19:07:00,297 adding 'pybedtools/contrib/plotting.py' 2023-09-26T19:07:00,299 adding 'pybedtools/contrib/venn_maker.py' 2023-09-26T19:07:00,301 adding 'pybedtools/include/bedFile.cpp' 2023-09-26T19:07:00,303 adding 'pybedtools/include/fileType.cpp' 2023-09-26T19:07:00,304 adding 'pybedtools/include/gzstream.cpp' 2023-09-26T19:07:00,306 adding 'pybedtools/test/__init__.py' 2023-09-26T19:07:00,308 adding 'pybedtools/test/genomepy_integration.py' 2023-09-26T19:07:00,309 adding 'pybedtools/test/regression_tests.py' 2023-09-26T19:07:00,315 adding 'pybedtools/test/test_1.py' 2023-09-26T19:07:00,317 adding 'pybedtools/test/test_cbedtools.py' 2023-09-26T19:07:00,319 adding 'pybedtools/test/test_contrib.py' 2023-09-26T19:07:00,320 adding 'pybedtools/test/test_gzip_support.py' 2023-09-26T19:07:00,321 adding 'pybedtools/test/test_helpers.py' 2023-09-26T19:07:00,325 adding 'pybedtools/test/test_issues.py' 2023-09-26T19:07:00,326 adding 'pybedtools/test/test_iter.py' 2023-09-26T19:07:00,328 adding 'pybedtools/test/test_len_leak.py' 2023-09-26T19:07:00,329 adding 'pybedtools/test/test_pathlib.py' 2023-09-26T19:07:00,330 adding 'pybedtools/test/tfuncs.py' 2023-09-26T19:07:00,332 adding 'pybedtools/test/data/1000genomes-example.vcf' 2023-09-26T19:07:00,334 adding 'pybedtools/test/data/1000genomes-example.vcf.gz' 2023-09-26T19:07:00,335 adding 'pybedtools/test/data/164.gtf' 2023-09-26T19:07:00,348 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2023-09-26T19:07:00,361 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2023-09-26T19:07:00,371 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2023-09-26T19:07:00,383 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2023-09-26T19:07:00,405 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2023-09-26T19:07:00,428 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2023-09-26T19:07:00,445 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2023-09-26T19:07:00,461 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2023-09-26T19:07:00,463 adding 'pybedtools/test/data/__init__.py' 2023-09-26T19:07:00,464 adding 'pybedtools/test/data/a.bed' 2023-09-26T19:07:00,465 adding 'pybedtools/test/data/a.bed.gz' 2023-09-26T19:07:00,466 adding 'pybedtools/test/data/a.bed.gz.tbi' 2023-09-26T19:07:00,467 adding 'pybedtools/test/data/a.igv_script' 2023-09-26T19:07:00,468 adding 'pybedtools/test/data/a.links.html' 2023-09-26T19:07:00,469 adding 'pybedtools/test/data/b.bed' 2023-09-26T19:07:00,471 adding 'pybedtools/test/data/bedpe.bed' 2023-09-26T19:07:00,472 adding 'pybedtools/test/data/bedpe2.bed' 2023-09-26T19:07:00,473 adding 'pybedtools/test/data/c.gff' 2023-09-26T19:07:00,474 adding 'pybedtools/test/data/d.gff' 2023-09-26T19:07:00,475 adding 'pybedtools/test/data/democonfig.yaml' 2023-09-26T19:07:00,524 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2023-09-26T19:07:00,576 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2023-09-26T19:07:00,580 adding 'pybedtools/test/data/example.narrowPeak' 2023-09-26T19:07:00,581 adding 'pybedtools/test/data/exons.gff' 2023-09-26T19:07:00,582 adding 'pybedtools/test/data/expand_test.bed' 2023-09-26T19:07:00,584 adding 'pybedtools/test/data/gdc.1.100.bam' 2023-09-26T19:07:00,585 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2023-09-26T19:07:00,586 adding 'pybedtools/test/data/gdc.50.200.bam' 2023-09-26T19:07:00,587 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2023-09-26T19:07:00,588 adding 'pybedtools/test/data/gdc.bam' 2023-09-26T19:07:00,590 adding 'pybedtools/test/data/gdc.bed' 2023-09-26T19:07:00,591 adding 'pybedtools/test/data/gdc.cram' 2023-09-26T19:07:00,593 adding 'pybedtools/test/data/gdc.gff' 2023-09-26T19:07:00,594 adding 'pybedtools/test/data/gdc.gff.gz' 2023-09-26T19:07:00,596 adding 'pybedtools/test/data/gdc.othersort.bam' 2023-09-26T19:07:00,597 adding 'pybedtools/test/data/gdc.sorted.bam' 2023-09-26T19:07:00,598 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2023-09-26T19:07:00,599 adding 'pybedtools/test/data/genome.fa' 2023-09-26T19:07:00,623 adding 'pybedtools/test/data/hg19.gff' 2023-09-26T19:07:00,626 adding 'pybedtools/test/data/hg38-base.bed' 2023-09-26T19:07:00,627 adding 'pybedtools/test/data/hg38-problem.bed' 2023-09-26T19:07:00,628 adding 'pybedtools/test/data/issue319.bed' 2023-09-26T19:07:00,638 adding 'pybedtools/test/data/issue319.out.bed' 2023-09-26T19:07:00,643 adding 'pybedtools/test/data/issue319.vcf.gz' 2023-09-26T19:07:00,644 adding 'pybedtools/test/data/issue_121.bam' 2023-09-26T19:07:00,645 adding 'pybedtools/test/data/m1.bed' 2023-09-26T19:07:00,646 adding 'pybedtools/test/data/mm9.bed12' 2023-09-26T19:07:00,648 adding 'pybedtools/test/data/multibamcov_test.bed' 2023-09-26T19:07:00,649 adding 'pybedtools/test/data/reads.bam' 2023-09-26T19:07:00,655 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2023-09-26T19:07:00,657 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2023-09-26T19:07:00,658 adding 'pybedtools/test/data/small.bam' 2023-09-26T19:07:00,659 adding 'pybedtools/test/data/small.fastq' 2023-09-26T19:07:01,635 adding 'pybedtools/test/data/snps.bed.gz' 2023-09-26T19:07:01,707 adding 'pybedtools/test/data/tag_test1.bed' 2023-09-26T19:07:01,708 adding 'pybedtools/test/data/tag_test2.bed' 2023-09-26T19:07:01,709 adding 'pybedtools/test/data/test.fa' 2023-09-26T19:07:01,710 adding 'pybedtools/test/data/test.fa.fai' 2023-09-26T19:07:01,711 adding 'pybedtools/test/data/test_bedpe.bed' 2023-09-26T19:07:01,712 adding 'pybedtools/test/data/test_peaks.bed' 2023-09-26T19:07:01,713 adding 'pybedtools/test/data/test_tsses.bed' 2023-09-26T19:07:01,714 adding 'pybedtools/test/data/v.vcf' 2023-09-26T19:07:01,715 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2023-09-26T19:07:01,717 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2023-09-26T19:07:01,718 adding 'pybedtools/test/data/venn.b.bed' 2023-09-26T19:07:01,720 adding 'pybedtools/test/data/venn.c.bed' 2023-09-26T19:07:01,937 adding 'pybedtools/test/data/x.bam' 2023-09-26T19:07:02,290 adding 'pybedtools/test/data/x.bed' 2023-09-26T19:07:02,312 adding 'pybedtools/test/data/y.bam' 2023-09-26T19:07:02,314 adding 'pybedtools-0.9.1.dist-info/LICENSE.txt' 2023-09-26T19:07:02,315 adding 'pybedtools-0.9.1.dist-info/METADATA' 2023-09-26T19:07:02,316 adding 'pybedtools-0.9.1.dist-info/WHEEL' 2023-09-26T19:07:02,317 adding 'pybedtools-0.9.1.dist-info/top_level.txt' 2023-09-26T19:07:02,319 adding 'pybedtools-0.9.1.dist-info/RECORD' 2023-09-26T19:07:02,490 removing build/bdist.linux-armv7l/wheel 2023-09-26T19:07:02,655 Building wheel for pybedtools (setup.py): finished with status 'done' 2023-09-26T19:07:03,012 Created wheel for pybedtools: filename=pybedtools-0.9.1-cp311-cp311-linux_armv7l.whl size=13980720 sha256=6538238784fb5e67037b2fcfeae6f149c2018eaa26666a77006bfa51eceffc4d 2023-09-26T19:07:03,013 Stored in directory: /tmp/pip-ephem-wheel-cache-pdwnhcm9/wheels/c4/f4/19/26c8d60799f04c0cd0167e9e823203eb4c8d16c41afe60f6d6 2023-09-26T19:07:03,031 Successfully built pybedtools 2023-09-26T19:07:03,349 Removed build tracker: '/tmp/pip-build-tracker-7l3esmmk'