2023-09-26T20:59:31,680 Created temporary directory: /tmp/pip-build-tracker-xg729j9k
2023-09-26T20:59:31,681 Initialized build tracking at /tmp/pip-build-tracker-xg729j9k
2023-09-26T20:59:31,682 Created build tracker: /tmp/pip-build-tracker-xg729j9k
2023-09-26T20:59:31,682 Entered build tracker: /tmp/pip-build-tracker-xg729j9k
2023-09-26T20:59:31,684 Created temporary directory: /tmp/pip-wheel-dxrl3qtm
2023-09-26T20:59:31,687 Created temporary directory: /tmp/pip-ephem-wheel-cache-i74vl3bf
2023-09-26T20:59:31,709 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-26T20:59:31,713 2 location(s) to search for versions of mdanalysis:
2023-09-26T20:59:31,713 * https://pypi.org/simple/mdanalysis/
2023-09-26T20:59:31,713 * https://www.piwheels.org/simple/mdanalysis/
2023-09-26T20:59:31,713 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/
2023-09-26T20:59:31,714 Getting page https://pypi.org/simple/mdanalysis/
2023-09-26T20:59:31,715 Found index url https://pypi.org/simple/
2023-09-26T20:59:32,028 Fetched page https://pypi.org/simple/mdanalysis/ as application/vnd.pypi.simple.v1+json
2023-09-26T20:59:32,056   Found link https://files.pythonhosted.org/packages/97/94/fd5a74e25fba58cfb514dc39ef4717baa392057503d6c38897f886b2c0c6/MDAnalysis-0.7.6.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.7.6
2023-09-26T20:59:32,057   Found link https://files.pythonhosted.org/packages/9d/32/36e44fd1b946331bd72c7cc8806dd2b37f597a49ac7ccfe2a64ad91e59f7/MDAnalysis-0.8.0rc2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc2
2023-09-26T20:59:32,058   Found link https://files.pythonhosted.org/packages/d9/c4/27ff9dcd35aeef52f41f01a6eff0328eda8a5fa6dfa8097daa9ff70dcdf8/MDAnalysis-0.8.0rc4.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc4
2023-09-26T20:59:32,058   Found link https://files.pythonhosted.org/packages/35/04/425a87220983514ef06f87cd98f54db0a84eed5bec9dfd4b27b6799ae99e/MDAnalysis-0.8.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0
2023-09-26T20:59:32,059   Found link https://files.pythonhosted.org/packages/7d/39/0afea6f9c2cb10259479800c3b8496c59ecdab8019d5c0cf868729db4c91/MDAnalysis-0.8.1rc1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1rc1
2023-09-26T20:59:32,060   Found link https://files.pythonhosted.org/packages/9b/45/5cfc731f70af562c860d5b79329980b8b380dd8e283847c950c1f7af8d4c/MDAnalysis-0.8.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1
2023-09-26T20:59:32,060   Found link https://files.pythonhosted.org/packages/b5/f0/a3d1acd3fedafd4b56f3cc8f880acb7f7f0f1c68c46121b4c180975435bb/MDAnalysis-0.9.0-dev.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0-dev
2023-09-26T20:59:32,061   Found link https://files.pythonhosted.org/packages/3b/1a/3bd08be00e453a29b6bcbb3320bb91619539eef69ab5ddef46e4b477b34d/MDAnalysis-0.9.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0
2023-09-26T20:59:32,062   Found link https://files.pythonhosted.org/packages/e5/28/dcafeb58175edede7e4393d5ccfeafc77c3ca8eac6dd2f14d3919e9d4c0c/MDAnalysis-0.9.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.1
2023-09-26T20:59:32,063   Found link https://files.pythonhosted.org/packages/4e/59/72545bc442ee0f6a45cafbd3b0e99add0aca51cbbbe3a882cc930f993306/MDAnalysis-0.9.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.2
2023-09-26T20:59:32,063   Found link https://files.pythonhosted.org/packages/82/db/8d468530d1a4834031166fcd9fb754a13e3fd5cc65ee09970ec57c9948cb/MDAnalysis-0.10.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.10.0
2023-09-26T20:59:32,064   Found link https://files.pythonhosted.org/packages/18/80/e6a5502a43f2ce2c432e08a9b404febc46fd403fb5e4b13ddc429f676fd7/MDAnalysis-0.11.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.11.0
2023-09-26T20:59:32,065   Found link https://files.pythonhosted.org/packages/66/77/d666034a559dc75a0cc485345f3058b45b8b067a858adb009b6fae0bcefc/MDAnalysis-0.12.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.12.1
2023-09-26T20:59:32,066   Found link https://files.pythonhosted.org/packages/78/33/704a708797267b35bfe27cc40e83eedabad62c7bb143babbc728ee285082/MDAnalysis-0.13.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.13.0
2023-09-26T20:59:32,067   Found link https://files.pythonhosted.org/packages/11/4c/1b683b1448f14e73f8a45981e27689ca694d5f1106e0453145f8619ffc0c/MDAnalysis-0.14.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.14.0
2023-09-26T20:59:32,067   Found link https://files.pythonhosted.org/packages/9f/56/a4cae14e45aa893a3578905a97e17a325d663e424736366adbc134e72dce/MDAnalysis-0.15.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.15.0
2023-09-26T20:59:32,068   Found link https://files.pythonhosted.org/packages/55/bb/32c3dbd8e92b661a98839a50bd3185d29949afe4618fc1a846e42bad0ebf/MDAnalysis-0.16.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.0
2023-09-26T20:59:32,068   Found link https://files.pythonhosted.org/packages/5f/68/7e7ce717700411e25821100a3bc3d31866ef7abee7e282736f9e0635fef7/MDAnalysis-0.16.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.1
2023-09-26T20:59:32,069   Found link https://files.pythonhosted.org/packages/ae/d5/07c38db64a6bd9bcec03caea8e07137bb2e571ce2bd145f9804727dfc2a5/MDAnalysis-0.16.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.2
2023-09-26T20:59:32,070   Found link https://files.pythonhosted.org/packages/91/e0/b12ee57016dffcf8da1f5651745ab981a09bc9e51519b6fa752a1a9a6d0f/MDAnalysis-0.17.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.17.0
2023-09-26T20:59:32,070   Found link https://files.pythonhosted.org/packages/17/44/e9aff78fc88f6b8ac56b7626f3c83ed3c53f723b3f756d4c211ebd5add74/MDAnalysis-0.18.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.18.0
2023-09-26T20:59:32,071   Found link https://files.pythonhosted.org/packages/6e/30/a2b4339369e252bf22dc8d1e732870bf88c33a73e4f5e73788c1a65b25a3/MDAnalysis-0.19.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.0
2023-09-26T20:59:32,072   Found link https://files.pythonhosted.org/packages/1c/24/b03a9bf48a1703b1ec31c34585aab123ca73e7778155ac3d5301a564fde6/MDAnalysis-0.19.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.1
2023-09-26T20:59:32,072   Found link https://files.pythonhosted.org/packages/be/72/6c2f9fcd842c9a50315ac93c4079b3f70735c6125fe903d04fb68a6e616a/MDAnalysis-0.19.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.2
2023-09-26T20:59:32,073   Found link https://files.pythonhosted.org/packages/b8/49/a0470dda3837aa4c42a7d2e69a4aaa1646ce2aeffe686f6887666f265b43/MDAnalysis-0.20.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.0
2023-09-26T20:59:32,074   Found link https://files.pythonhosted.org/packages/83/4b/97c2df212f1eee47144648aa0e0da1a9022eab74d3fc1fbaf2767734de3d/MDAnalysis-0.20.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.1
2023-09-26T20:59:32,075   Found link https://files.pythonhosted.org/packages/c9/ae/11905971cc6cdb436bff040270f58fb3fc54ef77aea2ce2dfc269129f74e/MDAnalysis-1.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 1.0.0
2023-09-26T20:59:32,076   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-26T20:59:32,077   Skipping link: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-26T20:59:32,079   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,079   Skipping link: 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,081   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,082   Skipping link: 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,082   Found link https://files.pythonhosted.org/packages/55/d1/9e302a51bdf6b3d0b7045c20b42203ad8ad20bf2103e8c19db2da868c6e7/MDAnalysis-2.0.0b0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 2.0.0b0
2023-09-26T20:59:32,083   Found link https://files.pythonhosted.org/packages/bf/a2/5371b04ff9009b7c33e2e211bd622f961d30ccc47cb45b579f314572dfee/MDAnalysis-2.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.6), version: 2.0.0
2023-09-26T20:59:32,084   Found link https://files.pythonhosted.org/packages/fd/5a/ff83875f292645f916cc3df339ce45b9f23a06183da51638efb6c593d2e6/MDAnalysis-2.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.7), version: 2.1.0
2023-09-26T20:59:32,085   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/e6/70ff5c7854cde5b6506cfd017f1b8271cb58f1d23f0d2e92b2119a5a2ab8/MDAnalysis-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,085   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/dd/91/227cddc28727e6d5ba1671f46657c9affe449d4259f9e598af74d1e878ae/MDAnalysis-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,086   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1d/e7355508ddd8254f4d67cae78675b48cf1fb0d91480b1ef6f836afb8d7fa/MDAnalysis-2.2.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,087   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/d7/e97e9ddf0dbc048765a02f2d16d09f62814ff12ab26d78ca00ee5ca5e21f/MDAnalysis-2.2.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,087   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/07/a888f3fe052fb83ef68491a4f9e818bcf37e499492a206a3bd8e74f713bc/MDAnalysis-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,088   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bc/c2/e8ba8d35609854287ec30cdb80a79e8de33f1cd88fd05efd40bdb705b142/MDAnalysis-2.2.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,088   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/17/0f/c96e22c0487dc4758d6cb895c0707c12e359b9e48d5022f7316df42f8c84/MDAnalysis-2.2.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,089   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/50/d9/af23d161bc9c50678f955d802b8cb1ab624e715ed7d86e8e14f86e4b8f80/MDAnalysis-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,090   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/5c/464d58a27ce0e2b0f010b1c65d0b4149256a7c470f5076beee1928e5e9a9/MDAnalysis-2.2.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,091   Found link https://files.pythonhosted.org/packages/5b/73/a077ff42d0cd88c5d3d6320fb156811cf67b28b5ea09a3c800e31af84b9b/MDAnalysis-2.2.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.2.0
2023-09-26T20:59:32,092   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/2f/b256ebf5f841f7db75f882fcd40a4260fe5b0f58a005ec80b5b6a06d00eb/MDAnalysis-2.3.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,092   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bd/3f/a2671e82dd0cce8ba6989ab7a2ca7b41caf030c060826e51f755db342ba7/MDAnalysis-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,093   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/ee/ec90cb066842d53783b8ee5b64ff6e53516072c248e175959d0a8fc7bf22/MDAnalysis-2.3.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,093   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/34/53/4b049681653aff30fa7f071a2aef6a842efe5c1f17d5852c0650517779c9/MDAnalysis-2.3.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,094   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/92/13/6e132a997503ecc40413196317a6bd8698ba503a7fc0af766af94b441da7/MDAnalysis-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,094   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/87/89/cf077bb830fecea88bafb1496dce463292195e957560f50853010ff30337/MDAnalysis-2.3.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,095   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/13/f2f10cb68c696fe39700c6efc44ac3d4e3e0700dcf53e38057f4a659183b/MDAnalysis-2.3.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,096   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/df/01/07823d486611f6ab2a71b6a378554e95b4e804eb59f00f196db0f54a014d/MDAnalysis-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,096   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/12/1ca45a5c081c74219a3de9d0886a164cbcd22205f628eb7c9dd6cf2b83e8/MDAnalysis-2.3.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,097   Found link https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.3.0
2023-09-26T20:59:32,098   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/eb/37ec700b4b4ab96f9e7e2e4d6e00fc5eac5ca4a93108ae372b68a7400e36/MDAnalysis-2.4.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,098   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/21/f8/975a66519b62a477edcc5478f9e13cba80b360e274f70c74c808f52dcacb/MDAnalysis-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,099   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/6e/f8361e40f161ea078c3a0d8f14e7934c02ddb2e6bb22d6645f927ccb2b0a/MDAnalysis-2.4.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,099   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/42/61/dcfeec3752842e387baf268ba2ac21d3b7af30a2fd79cc133d34d545f84d/MDAnalysis-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,100   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7e/b8/d37658555ff36a7bb6e934d017d6892be5f244d1b978b4b3afe78b7ce70c/MDAnalysis-2.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,100   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/33/71/89f035c3610952f590e833c06e95ebc951ee8b38ec15fa3a9b16dbf03ac5/MDAnalysis-2.4.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,101   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/75/26/21dbc3d45af119b4f62a26a6da01d26974bfff38d31ce28fda1c4dafd2e1/MDAnalysis-2.4.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,101   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c0/ea/59497208df61454b914456144adad561b8a2949b62dfc7016f979661556c/MDAnalysis-2.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,102   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/14/7d169a6807b2a80430e56df3d8a365fd77472666eca2699a406229e31a30/MDAnalysis-2.4.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,103   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/96/9d/08c32ba004d58c9c9b9113cb5026ec4f4787b5cbe909b35ac7fedde50582/MDAnalysis-2.4.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,103   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/98/8d/27b01addb197cd266414763403e88bbaaf2c4f3afa457a5d0f223d2cabbc/MDAnalysis-2.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,104   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ac/19/a4a8d5000be7bcadf20b6150731d2aab5e0842e6313c7b2c7b4d121e7ca6/MDAnalysis-2.4.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,105   Found link https://files.pythonhosted.org/packages/a9/b0/67c19de6f80f4d0b2b465b3d5f94d347ce0d200d7da6ed7d9d91b712db4d/MDAnalysis-2.4.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.0
2023-09-26T20:59:32,105   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/59/cd13f05e4a4dba1a96f818ab99619cf45dd4980086a69326ef9d973073cd/MDAnalysis-2.4.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,106   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9b/91/59b0303d555fe946144daeeb3484f8dae716ae78c4105d40647d83bda678/MDAnalysis-2.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,107   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ba/9d/5f2429ee496079a2969b9b03850ab5fd5f5be242119b088855fd49f6f6e6/MDAnalysis-2.4.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,108   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9d/ae/3ae3b51a0adb99099572052b05e6202efc2f1a02795ed8f9de5b2b0ef154/MDAnalysis-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,108   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/6e/b396db627091d47b6f224f02cb08739c8a8ef697ee9949f3d4be81cc8ddf/MDAnalysis-2.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,109   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/1e/a7dcf4f55b7dd624edaa4fa6b47d202fd3884c5b73ce13ac81fdaee0339b/MDAnalysis-2.4.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,109   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c8/e5/1f68f743a1ad1b9a09d2047cc55c6565e5c835c2a444686e8458f5dac831/MDAnalysis-2.4.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,109   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8a/3d/34bc8f592d832ec464e427ecf09c62898a128a41c3f1ae142a1d9f9f2646/MDAnalysis-2.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,110   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/3f/c3961c791f4ab6128fbde66d5829b53d8e89a67ac3d4c23850b58c267206/MDAnalysis-2.4.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,111   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3d/59/1a669cb57701c883c0b2e36742fd5d7a250a71fc24e369c57db71496481f/MDAnalysis-2.4.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,112   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/64/3f/4a0d22c2b5bad72be6c07c31c6e9e870e6b3a50142edc97962830bbe22ad/MDAnalysis-2.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,112   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/d8/e99fcc0339181b0ffe3fac620f884241bd502bb392696e2429984c3ea81d/MDAnalysis-2.4.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,113   Found link https://files.pythonhosted.org/packages/8f/c0/eba86324ca52fe66db629a4d805729ad8ac3364e3adad532c063b52b7051/MDAnalysis-2.4.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.1
2023-09-26T20:59:32,114   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/39/ae/52d836a64c4094794580daf0d2692fa95d244be6321fa17e6d45fe35f621/MDAnalysis-2.4.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,114   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/69/c7/3dfe97658982390bbf93cf97f4aabb22025d2956bcd82b410e8c1831dfac/MDAnalysis-2.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,115   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/73/74/abcb7c91e47f350db0268c2058f079c937bb2f337d73b62ca3b8dea4642e/MDAnalysis-2.4.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,116   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/34/7eedce6129f71fa38fbf9d7fe3a8f366ddee3142afb07113598bf2b66d81/MDAnalysis-2.4.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,116   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ee/40/20322a888419cc4aeaafa552c51c97c666a46e69c0d130dc5744ec04ae58/MDAnalysis-2.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,117   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/65/c72765a2a6c73b8e03e114cf7e1661c28df3049adc42e8c75838b48ca083/MDAnalysis-2.4.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,117   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/57/eb/504c7f70f9d10d54ce9227df3c71b128b7a15945c525ad1604a99e654973/MDAnalysis-2.4.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,118   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/84/1fa84dc9f427b8200444b1921eaf6739d9309203ffe8851a0c0e9236acb7/MDAnalysis-2.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,118   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/44/7f/4e2ae6b5207f9782cfff053f3939433c62ef97e624bf8a71c07411d015e9/MDAnalysis-2.4.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,119   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/9a/8e6cdd8c6da04926bbaea76877b9b17082b77db742a82074b2c6dfb85e99/MDAnalysis-2.4.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/19/cc/840974bc7109839cdef50cc049336cefb2a4acc44f68913eec5f0d4db458/MDAnalysis-2.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/37/ee29c83d622e3d55a2e2936d70cf3f3d74beaf28d5d5747385e2f9149ec8/MDAnalysis-2.4.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,121   Found link https://files.pythonhosted.org/packages/7d/6b/f0ea2ab44ed0a2448737d779e02d3ae719c186dc9e3ce4cd0d75b4026dcc/MDAnalysis-2.4.2.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.2
2023-09-26T20:59:32,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/80/b5/bd5da798ba3dc191d9c4bfe3c130db1c93b917dd85b398fb3cafabeefffe/MDAnalysis-2.4.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/e3/5c3f39b1d9eb8d583d9c1e6284283895e0cd530bf444512a462637f65918/MDAnalysis-2.4.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/23/33758010c6a4a39f1d7548da0760e89447a67a52f65ca44fe8c61739f2ec/MDAnalysis-2.4.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0a/ea/4d2009e7a20642050da1bfbb61b96153961087c71cb41f60c0d0309a0e9f/MDAnalysis-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/bf/5e26758e34fd7573d1f1437664009c4940fbe62e89b372640576b7c00edc/MDAnalysis-2.4.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/af/b3/b906d3a800e414049e88d84819ac93fb790ee3d9ef7b9561a1fec97910f4/MDAnalysis-2.4.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4c/37/fbd81452243dffbda76b234e5830cd44be85efe97d0b1839b0a7378a36d2/MDAnalysis-2.4.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,126   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/75/05c14b9784df8b7e06d270089ea9438323cd781d6897d870e13347a1d497/MDAnalysis-2.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/eb/74/ab6867e602e5fc30f21ee6fe8669f42c4f47b8b7cc0b5686cad60a2ed7be/MDAnalysis-2.4.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/be/9896583934126d2207d79c9fd1bd19918b1652fafb2d09489e7306c5cbc6/MDAnalysis-2.4.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/5c/17e47fa60624834e70c34f4625cd6105d621fc055bc59339173e71450a6e/MDAnalysis-2.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/a9/1851961fb6f7a64d837de8ecbd4548c42e4066b303ac095498169f8c64e9/MDAnalysis-2.4.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,129   Found link https://files.pythonhosted.org/packages/6b/21/c8e7b9655e7819e6e12fd45b35175a13b73262626aefa0a2d1c6766708bc/MDAnalysis-2.4.3.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.3
2023-09-26T20:59:32,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/dd/509c38c5a9bf1097c38d83833b3e31c1d567bb2eeec7aec24b774e07fdbf/MDAnalysis-2.5.0.dev0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b5/df/cbec71441c70e7e56ad669dbfca766803579251324c1588543ca3c5c60c9/MDAnalysis-2.5.0.dev0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/90/52cc55304d6cad9b26e4b4866e2f1d5b369a61f3f5f7f35628d637218d02/MDAnalysis-2.5.0.dev0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,132   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ca/a8/c17eff9a6ddc6cf00823750a64787b0b4cce4d3e638e5bbbe05cfeaef483/MDAnalysis-2.5.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,132   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e4/71/c597d18fa401a7335a4c809384468df34fafd44db206dbd575aadca22c5c/MDAnalysis-2.5.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/73/b385fbed9e3200647586572be9acd0b9ff860d6422d4679a34405a632818/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/b4/64e0f3cf5dd47884163c67dc45156878e0740c6b48c646821d259d004372/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/21/4eff28643878504f800d87898d0e0d2f2719a1e3e5aa9b8a82985c889a41/MDAnalysis-2.5.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,135   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4f/a1/af895e16f737ddec418f1b3da2a27868111eee59bef5816209531e3cae81/MDAnalysis-2.5.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,135   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f2/8b/c6f3db1e022b3716322528bcfdf3e806c56cdcf7713e9db70b75343db384/MDAnalysis-2.5.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,136   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/bc/ec355c860ef217518041358c33cf8d2905d0580daaa2946405deec5ea7f4/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,136   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5c/e6/0a150fec191ba3d421ae2ac183fc51bfddb0031fc4190e1832605158a845/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,137   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,137   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5e/35/c174ccad552dd6ddbcd907b3ed000344e4ea4da82cd960d0e20a7c221c25/MDAnalysis-2.5.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/03/7ae1477a01aa3b3b38cf87988316846fd65ba3a6572d00dfe83ea0d8f27f/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,139   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,140   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,141   Found link https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.5.0
2023-09-26T20:59:32,141   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/79/45/b10fcce619623269182392859c7d4de1df939aa6e0a58bf18e01e66e9a0b/MDAnalysis-2.6.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ce/3a/500da42d4396e3a6e05cdd8aa9fcb4f1642ffded3e3e1bc1920804eb1969/MDAnalysis-2.6.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8f/0b/a941f3e533117111e546b611aa234b6cf208dd209a0f58115b0861cd44af/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,143   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/91/f997fe2ee6f6eda73cdbc97c3dc266ab8ea661bae1136e784e01ec2187e7/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,144   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3f/51/7c5790085f4d61211b38872cce7217bdfb46fa28f7247d7e565f67521645/MDAnalysis-2.6.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,144   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ea/0f/6dc7ec68db8c42b0703fb7bb15885ac607e1f0f09f5a9c134035353629fe/MDAnalysis-2.6.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,145   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e3/58/d738cb229e6e908f37bd5b2d2cd9e947dff78b18178f971a9803c367b140/MDAnalysis-2.6.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,146   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/56/07/c51e53ba655c3996993ed048b27b2ad472098ff111e140beddfa0f87a664/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,146   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1f/662db1dc5887f1c7c0ed9022bb22c3dff8106efd74c7a589597260da3dcd/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,147   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/05/65e89dac4c27984d8c2b555e104aed258db02f8141ecea64422771c63a75/MDAnalysis-2.6.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,147   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1f/19/fe06d9d3a491eec7615d1a6b9804fd2b2f4f262a22cd1229eced619deb72/MDAnalysis-2.6.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,148   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ad/22/7fbf313b9bcb3fe390da1eaaeecb542f52a8abdd09dc94c106a8a30ac505/MDAnalysis-2.6.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,149   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4b/0e/8064c23b5cfab15a07c5669d72fb94bcf73b69ac36018073b9521760e21c/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,149   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/40/c86f37f0bc281f1002e7f800acd1747c50b1b0cfe25beaba543e3a9f0104/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,149   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a6/35/cf1c6a669eabb4e6b9c66e5f60214eef0d111c82dca16c265afd9a1f61e5/MDAnalysis-2.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,150   Found link https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.0
2023-09-26T20:59:32,151   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/d3/17/9f60da41a30036dce229edf049995eec74aa62713b0d9648ed5f9aec3bad/MDAnalysis-2.6.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,152   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b3/e3/07df8ad49734110f5fde7698259ae1e9469b54f5e5f81f7a1ce217b61a5f/MDAnalysis-2.6.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,152   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/fe/0a/bf186c0bc8332962a4e9085eafc5dd7672289453bf49c8daba95523e1e94/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,153   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/c6/c2ec55f7ef4a7fe1120ded656bdc8cbac9172c242d440d0cf4e3aac956ca/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,154   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/23/48/8f3d9538d15909542fa6db82eff31fc29da0a11978dcb92dcb49c315e2f6/MDAnalysis-2.6.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,154   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c5/03/259de57764f65bba1e380628a2db0c5b4983d7644a3a294e31bd3d346792/MDAnalysis-2.6.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,155   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c1/34/7542d1f4ff58828d33500c4b7f93948131797a8fa193e1943090ef21157e/MDAnalysis-2.6.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,155   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/c2/a7a75fa0aad84a812a79c75f043c2f866c3b976403516aebccc8bfac4df0/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,157   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bf/5d/f07ae9f2294615f400bf49bd77efa0c0a44c653b50983cdf5e560f0e6da5/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,157   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c4/09/f583d8a7cca23c493d89f85c4e82608c4ab20e47be9932c0ae508104d52d/MDAnalysis-2.6.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,158   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/72/8c70e522431b5ecefd01c6c652004836ff41310e901db9f4671604f2a59d/MDAnalysis-2.6.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,158   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/06/0b/61f82278421c83499ca33e31d59b033c9302e32f99b9bf5cb6aa9acf9e54/MDAnalysis-2.6.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,159   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f0/36/8d4a1d03188661563696e0c666a9bb3d1907c0acae4e518f495143380f8e/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,159   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a7/48/c66fa9381aa89165f6d732f71103f39bfd42f8b6bfc7c901b9973b435344/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,160   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/cd/f4/9ad2217466d523c3285bae9610041e407c8d5ad7582b2783a553a38d07d6/MDAnalysis-2.6.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,160   Found link https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.1
2023-09-26T20:59:32,161 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/
2023-09-26T20:59:32,162 Getting page https://www.piwheels.org/simple/mdanalysis/
2023-09-26T20:59:32,163 Found index url https://www.piwheels.org/simple/
2023-09-26T20:59:32,364 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html
2023-09-26T20:59:32,394   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv7l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,395   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv6l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,395   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,396   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv6l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,397   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,397   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv6l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-26T20:59:32,398   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv7l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,398   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv6l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,399   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv7l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,399   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv6l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,400   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv7l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,400   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv6l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,401   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv7l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,402   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv6l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,402   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,403   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,403   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,404   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-26T20:59:32,405   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-26T20:59:32,405   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-26T20:59:32,406   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-26T20:59:32,406   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-26T20:59:32,407   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-26T20:59:32,407   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-26T20:59:32,408   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-26T20:59:32,408   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-26T20:59:32,409   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv7l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,410   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv6l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,410   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,411   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,411   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,412   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,413   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,413   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-26T20:59:32,414   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-26T20:59:32,414   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-26T20:59:32,415   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,415   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,416   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,417   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,417   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,418   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,418   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,419   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,420   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv7l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,420   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv6l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,421   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,421   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,422   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,422   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv7l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,423   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,424   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,424   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,425   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,425   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,426   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,427   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,427   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,428   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,428   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,429   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,429   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,430   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,430   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,431   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,432   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,432   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,433   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,434   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,434   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,435   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,435   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,436   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,437   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,437   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,437   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,438   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,439   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,439   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,440   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,440   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,441   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,442   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,442   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,443   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,444   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,445   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,445   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,445   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,446   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,446   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,447   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,448   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,448   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,449   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,450   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,450   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,451   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,452   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,452   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,453   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,453   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,454   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,454   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,455   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,456   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,456   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,457   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,458   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,459   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,459   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,460   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,461   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,461   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,462   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,462   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,463   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,463   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,464   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,464   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-26T20:59:32,465 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/
2023-09-26T20:59:32,466 Skipping link: not a file: https://pypi.org/simple/mdanalysis/
2023-09-26T20:59:32,488 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates
2023-09-26T20:59:32,506 Collecting mdanalysis==2.6.0
2023-09-26T20:59:32,509   Created temporary directory: /tmp/pip-unpack-8lame6mm
2023-09-26T20:59:33,213   Downloading MDAnalysis-2.6.0.tar.gz (4.1 MB)
2023-09-26T20:59:35,893   Added mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-xg729j9k'
2023-09-26T20:59:35,904   Created temporary directory: /tmp/pip-build-env-lujaxgkr
2023-09-26T20:59:35,908   Installing build dependencies: started
2023-09-26T20:59:35,909   Running command pip subprocess to install build dependencies
2023-09-26T20:59:37,060   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-26T20:59:37,563   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-26T20:59:39,251   Collecting Cython>=0.28
2023-09-26T20:59:39,253     Obtaining dependency information for Cython>=0.28 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-26T20:59:39,259     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-26T20:59:39,413   Collecting packaging
2023-09-26T20:59:39,428     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-09-26T20:59:40,155     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T20:59:40,163     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T20:59:40,170     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T20:59:40,178     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T20:59:40,185     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T20:59:40,561   Collecting numpy<2.0,>=1.25
2023-09-26T20:59:41,435     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB)
2023-09-26T20:59:43,048   Collecting setuptools
2023-09-26T20:59:43,049     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-26T20:59:43,053     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-26T20:59:43,264   Collecting wheel
2023-09-26T20:59:43,278     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-26T20:59:43,536   Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB)
2023-09-26T20:59:43,579   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-26T20:59:46,041   Installing collected packages: wheel, setuptools, packaging, numpy, Cython
2023-09-26T20:59:46,310     Creating /tmp/pip-build-env-lujaxgkr/overlay/local/bin
2023-09-26T20:59:46,312     changing mode of /tmp/pip-build-env-lujaxgkr/overlay/local/bin/wheel to 755
2023-09-26T21:00:15,073     changing mode of /tmp/pip-build-env-lujaxgkr/overlay/local/bin/f2py to 755
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2023-09-26T21:00:31,581   Successfully installed Cython-3.0.2 numpy-1.25.2 packaging-23.1 setuptools-68.2.2 wheel-0.41.2
2023-09-26T21:00:32,656   Installing build dependencies: finished with status 'done'
2023-09-26T21:00:32,671   Getting requirements to build wheel: started
2023-09-26T21:00:32,673   Running command Getting requirements to build wheel
2023-09-26T21:02:04,778   warning: MDAnalysis/lib/nsgrid.pyx:86:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:04,781   warning: MDAnalysis/lib/nsgrid.pyx:88:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:04,783   warning: MDAnalysis/lib/nsgrid.pyx:89:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:04,784   warning: MDAnalysis/lib/nsgrid.pyx:90:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:05,007   warning: MDAnalysis/lib/nsgrid.pyx:91:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:05,008   warning: MDAnalysis/lib/nsgrid.pyx:92:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:05,008   warning: MDAnalysis/lib/nsgrid.pyx:93:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:05,009   warning: MDAnalysis/lib/nsgrid.pyx:97:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-26T21:02:12,724   Attempting to autodetect OpenMP support... Compiler supports OpenMP
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2023-09-26T21:02:13,506   Getting requirements to build wheel: finished with status 'done'
2023-09-26T21:02:13,536   Created temporary directory: /tmp/pip-modern-metadata-qb5elc8b
2023-09-26T21:02:13,539   Preparing metadata (pyproject.toml): started
2023-09-26T21:02:13,541   Running command Preparing metadata (pyproject.toml)
2023-09-26T21:02:21,888   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2023-09-26T21:02:21,888   Will attempt to use Cython.
2023-09-26T21:02:22,018   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2023-09-26T21:02:22,019     corresp(dist, value, root_dir)
2023-09-26T21:02:22,350   running dist_info
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2023-09-26T21:02:23,466   adding license file 'LICENSE'
2023-09-26T21:02:23,467   adding license file 'AUTHORS'
2023-09-26T21:02:23,487   writing manifest file '/tmp/pip-modern-metadata-qb5elc8b/MDAnalysis.egg-info/SOURCES.txt'
2023-09-26T21:02:23,490   creating '/tmp/pip-modern-metadata-qb5elc8b/MDAnalysis-2.6.0.dist-info'
2023-09-26T21:02:23,767   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-26T21:02:23,778   Source in /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced has version 2.6.0, which satisfies requirement mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz
2023-09-26T21:02:23,781   Removed mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-xg729j9k'
2023-09-26T21:02:23,799 Created temporary directory: /tmp/pip-unpack-ypid0_c5
2023-09-26T21:02:23,800 Created temporary directory: /tmp/pip-unpack-36zf2_jk
2023-09-26T21:02:23,876 Building wheels for collected packages: mdanalysis
2023-09-26T21:02:23,882   Created temporary directory: /tmp/pip-wheel-oyyr5aip
2023-09-26T21:02:23,883   Destination directory: /tmp/pip-wheel-oyyr5aip
2023-09-26T21:02:23,886   Building wheel for mdanalysis (pyproject.toml): started
2023-09-26T21:02:23,888   Running command Building wheel for mdanalysis (pyproject.toml)
2023-09-26T21:02:30,435   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2023-09-26T21:02:30,435   Will attempt to use Cython.
2023-09-26T21:02:30,545   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2023-09-26T21:02:30,546     corresp(dist, value, root_dir)
2023-09-26T21:02:30,846   running bdist_wheel
2023-09-26T21:02:30,945   running build
2023-09-26T21:02:30,946   running build_py
2023-09-26T21:02:30,977   creating build
2023-09-26T21:02:30,978   creating build/lib.linux-armv7l-cpython-311
2023-09-26T21:02:30,979   creating build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:30,981   copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,004   copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,007   copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,010   copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,104   copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,107   copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:31,144   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,146   copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,201   copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,205   copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,351   copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,361   copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,494   copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,625   copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-26T21:02:31,789   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,798   copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,855   copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,904   copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,953   copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,991   copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:31,996   copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:32,037   copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:32,044   copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:32,070   copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:32,876   copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:33,896   copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,667   copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,673   copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,677   copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,682   copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,689   copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,694   copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,700   copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,704   copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,709   copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,714   copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,721   copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,728   copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,732   copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,740   copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,745   copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,751   copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,755   copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,761   copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,766   copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,773   copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,777   copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,779   copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:34,785   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,787   copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,792   copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,795   copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,799   copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,802   copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,805   copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,809   copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,812   copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,816   copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-26T21:02:34,822   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,824   copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,833   copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,837   copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,841   copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,845   copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,849   copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,854   copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,860   copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,864   copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,868   copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,872   copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,876   copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,880   copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,883   copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,888   copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,892   copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,895   copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,899   copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,904   copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,907   copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,911   copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,916   copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,920   copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,923   copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:02:34,928   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,930   copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,933   copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,937   copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,940   copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,944   copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,947   copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,950   copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-26T21:02:34,954   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,956   copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,960   copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,965   copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,969   copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,973   copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-26T21:02:34,978   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:34,979   copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:34,983   copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:34,989   copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:34,992   copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:34,996   copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,000   copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,003   copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,007   copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,013   copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,019   copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,022   copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:35,028   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,029   copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,033   copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,036   copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,042   copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,045   copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,049   copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,053   copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,057   copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,061   copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,065   copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,069   copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,073   copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,077   copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,081   copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,084   copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,087   copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,090   copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,093   copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,097   copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,100   copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,103   copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,106   copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,110   copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,113   copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,117   copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,121   copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,125   copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,129   copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-26T21:02:35,133   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,135   copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,146   copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,152   copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,156   copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,161   copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,166   copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,169   copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,172   copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,176   copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-26T21:02:35,183   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-26T21:02:35,185   copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-26T21:02:35,188   copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-26T21:02:35,193   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-26T21:02:35,194   copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-26T21:02:35,199   copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-26T21:02:35,204   copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-26T21:02:35,207   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,209   copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,213   copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,217   copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,221   copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,224   copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,230   copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:35,234   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-26T21:02:35,236   copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-26T21:02:35,240   copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-26T21:02:35,243   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2023-09-26T21:02:35,245   copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2023-09-26T21:02:35,250   copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2023-09-26T21:02:35,254   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
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2023-09-26T21:02:35,259   copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
2023-09-26T21:02:35,263   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
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2023-09-26T21:02:35,279   copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:02:35,285   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
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2023-09-26T21:02:35,301   copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
2023-09-26T21:02:35,304   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:35,306   copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:35,309   copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:35,311   copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:35,315   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:35,316   copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:35,320   copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:35,323   copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:35,325   copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:35,329   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:35,330   copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:35,334   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-26T21:02:35,335   copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-26T21:02:35,339   copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-26T21:02:35,343   copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-26T21:02:35,346   copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-26T21:02:35,349   running egg_info
2023-09-26T21:02:35,357   writing MDAnalysis.egg-info/PKG-INFO
2023-09-26T21:02:35,369   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
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2023-09-26T21:02:35,400   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-26T21:02:35,401   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,402   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,408   dependency /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,411   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,415   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,434   dependency /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
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2023-09-26T21:02:35,448   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-26T21:02:35,449   dependency /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-26T21:02:35,449   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2023-09-26T21:02:35,488   reading manifest template 'MANIFEST.in'
2023-09-26T21:02:35,692   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2023-09-26T21:02:35,695   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-09-26T21:02:35,697   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2023-09-26T21:02:35,700   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2023-09-26T21:02:35,702   warning: no previously-included files matching '*~' found anywhere in distribution
2023-09-26T21:02:35,704   warning: no previously-included files matching '.git' found anywhere in distribution
2023-09-26T21:02:35,705   adding license file 'LICENSE'
2023-09-26T21:02:35,706   adding license file 'AUTHORS'
2023-09-26T21:02:35,725   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2023-09-26T21:02:35,729   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.include' is absent from the `packages` configuration.
2023-09-26T21:02:35,729   !!

2023-09-26T21:02:35,731           ********************************************************************************
2023-09-26T21:02:35,731           ############################
2023-09-26T21:02:35,732           # Package would be ignored #
2023-09-26T21:02:35,733           ############################
2023-09-26T21:02:35,733           Python recognizes 'MDAnalysis.analysis.encore.clustering.include' as an importable package[^1],
2023-09-26T21:02:35,734           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:35,735           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:35,736           package, please make sure that 'MDAnalysis.analysis.encore.clustering.include' is explicitly added
2023-09-26T21:02:35,737           to the `packages` configuration field.

2023-09-26T21:02:35,738           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:35,739           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:35,739           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:35,741           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:35,742           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:35,743           If you don't want 'MDAnalysis.analysis.encore.clustering.include' to be distributed and are
2023-09-26T21:02:35,744           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.include' via
2023-09-26T21:02:35,745           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:35,745           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:35,746           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:35,746           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:35,748           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:35,749           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:35,749                 even if it does not contain any `.py` files.
2023-09-26T21:02:35,750                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:35,750                 directory, all directories are treated like packages.
2023-09-26T21:02:35,751           ********************************************************************************

2023-09-26T21:02:35,753   !!
2023-09-26T21:02:35,753     check.warn(importable)
2023-09-26T21:02:35,754   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.src' is absent from the `packages` configuration.
2023-09-26T21:02:35,754   !!

2023-09-26T21:02:35,757           ********************************************************************************
2023-09-26T21:02:35,757           ############################
2023-09-26T21:02:35,758           # Package would be ignored #
2023-09-26T21:02:35,759           ############################
2023-09-26T21:02:35,759           Python recognizes 'MDAnalysis.analysis.encore.clustering.src' as an importable package[^1],
2023-09-26T21:02:35,760           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:35,761           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:35,762           package, please make sure that 'MDAnalysis.analysis.encore.clustering.src' is explicitly added
2023-09-26T21:02:35,763           to the `packages` configuration field.

2023-09-26T21:02:35,764           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:35,767           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:35,793           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:35,796           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:35,797           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:35,798           If you don't want 'MDAnalysis.analysis.encore.clustering.src' to be distributed and are
2023-09-26T21:02:35,799           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.src' via
2023-09-26T21:02:35,800           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:35,800           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:35,801           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:35,802           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:35,804           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:35,805           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:35,806                 even if it does not contain any `.py` files.
2023-09-26T21:02:35,807                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:35,808                 directory, all directories are treated like packages.
2023-09-26T21:02:35,809           ********************************************************************************

2023-09-26T21:02:35,810   !!
2023-09-26T21:02:35,811     check.warn(importable)
2023-09-26T21:02:35,811   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is absent from the `packages` configuration.
2023-09-26T21:02:35,812   !!

2023-09-26T21:02:35,819           ********************************************************************************
2023-09-26T21:02:35,831           ############################
2023-09-26T21:02:35,843           # Package would be ignored #
2023-09-26T21:02:35,843           ############################
2023-09-26T21:02:35,844           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.include' as an importable package[^1],
2023-09-26T21:02:35,844           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:35,846           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:35,846           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is explicitly added
2023-09-26T21:02:35,847           to the `packages` configuration field.

2023-09-26T21:02:35,848           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:35,848           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:35,849           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:35,850           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:35,851           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:35,852           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.include' to be distributed and are
2023-09-26T21:02:35,853           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.include' via
2023-09-26T21:02:35,854           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:35,854           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:35,855           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:35,859           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:35,887           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:35,891           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:35,892                 even if it does not contain any `.py` files.
2023-09-26T21:02:35,892                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:35,893                 directory, all directories are treated like packages.
2023-09-26T21:02:35,893           ********************************************************************************

2023-09-26T21:02:35,894   !!
2023-09-26T21:02:35,895     check.warn(importable)
2023-09-26T21:02:35,896   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is absent from the `packages` configuration.
2023-09-26T21:02:35,896   !!

2023-09-26T21:02:35,898           ********************************************************************************
2023-09-26T21:02:35,899           ############################
2023-09-26T21:02:35,899           # Package would be ignored #
2023-09-26T21:02:35,900           ############################
2023-09-26T21:02:35,900           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.src' as an importable package[^1],
2023-09-26T21:02:35,901           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:35,908           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:35,908           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is explicitly added
2023-09-26T21:02:35,909           to the `packages` configuration field.

2023-09-26T21:02:35,921           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:35,947           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:35,948           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:35,949           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:35,951           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:35,952           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.src' to be distributed and are
2023-09-26T21:02:35,953           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.src' via
2023-09-26T21:02:35,958           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:35,961           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:35,971           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:35,972           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:35,973           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:35,975           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:35,976                 even if it does not contain any `.py` files.
2023-09-26T21:02:35,977                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:35,977                 directory, all directories are treated like packages.
2023-09-26T21:02:35,978           ********************************************************************************

2023-09-26T21:02:35,979   !!
2023-09-26T21:02:35,980     check.warn(importable)
2023-09-26T21:02:35,981   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.include' is absent from the `packages` configuration.
2023-09-26T21:02:35,982   !!

2023-09-26T21:02:35,983           ********************************************************************************
2023-09-26T21:02:35,983           ############################
2023-09-26T21:02:35,984           # Package would be ignored #
2023-09-26T21:02:35,985           ############################
2023-09-26T21:02:35,985           Python recognizes 'MDAnalysis.lib.formats.include' as an importable package[^1],
2023-09-26T21:02:35,987           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:36,007           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:36,017           package, please make sure that 'MDAnalysis.lib.formats.include' is explicitly added
2023-09-26T21:02:36,018           to the `packages` configuration field.

2023-09-26T21:02:36,019           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:36,020           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:36,020           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:36,022           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:36,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:36,026           If you don't want 'MDAnalysis.lib.formats.include' to be distributed and are
2023-09-26T21:02:36,027           already explicitly excluding 'MDAnalysis.lib.formats.include' via
2023-09-26T21:02:36,028           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:36,029           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:36,029           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:36,030           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:36,032           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:36,044           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:36,045                 even if it does not contain any `.py` files.
2023-09-26T21:02:36,045                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:36,046                 directory, all directories are treated like packages.
2023-09-26T21:02:36,047           ********************************************************************************

2023-09-26T21:02:36,048   !!
2023-09-26T21:02:36,049     check.warn(importable)
2023-09-26T21:02:36,050   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.src' is absent from the `packages` configuration.
2023-09-26T21:02:36,051   !!

2023-09-26T21:02:36,052           ********************************************************************************
2023-09-26T21:02:36,053           ############################
2023-09-26T21:02:36,053           # Package would be ignored #
2023-09-26T21:02:36,054           ############################
2023-09-26T21:02:36,055           Python recognizes 'MDAnalysis.lib.formats.src' as an importable package[^1],
2023-09-26T21:02:36,056           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:36,057           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:36,058           package, please make sure that 'MDAnalysis.lib.formats.src' is explicitly added
2023-09-26T21:02:36,065           to the `packages` configuration field.

2023-09-26T21:02:36,067           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:36,067           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:36,068           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:36,070           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:36,071           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:36,072           If you don't want 'MDAnalysis.lib.formats.src' to be distributed and are
2023-09-26T21:02:36,073           already explicitly excluding 'MDAnalysis.lib.formats.src' via
2023-09-26T21:02:36,074           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:36,075           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:36,075           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:36,077           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:36,078           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:36,081           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:36,081                 even if it does not contain any `.py` files.
2023-09-26T21:02:36,082                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:36,083                 directory, all directories are treated like packages.
2023-09-26T21:02:36,084           ********************************************************************************

2023-09-26T21:02:36,085   !!
2023-09-26T21:02:36,087     check.warn(importable)
2023-09-26T21:02:36,087   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.include' is absent from the `packages` configuration.
2023-09-26T21:02:36,088   !!

2023-09-26T21:02:36,090           ********************************************************************************
2023-09-26T21:02:36,091           ############################
2023-09-26T21:02:36,092           # Package would be ignored #
2023-09-26T21:02:36,092           ############################
2023-09-26T21:02:36,093           Python recognizes 'MDAnalysis.lib.include' as an importable package[^1],
2023-09-26T21:02:36,094           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:36,096           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:36,097           package, please make sure that 'MDAnalysis.lib.include' is explicitly added
2023-09-26T21:02:36,098           to the `packages` configuration field.

2023-09-26T21:02:36,100           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:36,101           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:36,103           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:36,105           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:36,106           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:36,108           If you don't want 'MDAnalysis.lib.include' to be distributed and are
2023-09-26T21:02:36,108           already explicitly excluding 'MDAnalysis.lib.include' via
2023-09-26T21:02:36,109           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:36,109           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:36,110           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:36,111           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:36,113           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:36,115           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:36,116                 even if it does not contain any `.py` files.
2023-09-26T21:02:36,117                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:36,122                 directory, all directories are treated like packages.
2023-09-26T21:02:36,122           ********************************************************************************

2023-09-26T21:02:36,124   !!
2023-09-26T21:02:36,124     check.warn(importable)
2023-09-26T21:02:36,125   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.libmdanalysis' is absent from the `packages` configuration.
2023-09-26T21:02:36,125   !!

2023-09-26T21:02:36,126           ********************************************************************************
2023-09-26T21:02:36,127           ############################
2023-09-26T21:02:36,128           # Package would be ignored #
2023-09-26T21:02:36,128           ############################
2023-09-26T21:02:36,129           Python recognizes 'MDAnalysis.lib.libmdanalysis' as an importable package[^1],
2023-09-26T21:02:36,129           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:36,131           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:36,131           package, please make sure that 'MDAnalysis.lib.libmdanalysis' is explicitly added
2023-09-26T21:02:36,132           to the `packages` configuration field.

2023-09-26T21:02:36,133           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:36,134           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:36,134           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:36,136           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:36,137           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:36,137           If you don't want 'MDAnalysis.lib.libmdanalysis' to be distributed and are
2023-09-26T21:02:36,138           already explicitly excluding 'MDAnalysis.lib.libmdanalysis' via
2023-09-26T21:02:36,139           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:36,139           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:36,142           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:36,150           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:36,152           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:36,154           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:36,155                 even if it does not contain any `.py` files.
2023-09-26T21:02:36,156                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:36,156                 directory, all directories are treated like packages.
2023-09-26T21:02:36,157           ********************************************************************************

2023-09-26T21:02:36,159   !!
2023-09-26T21:02:36,159     check.warn(importable)
2023-09-26T21:02:36,160   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.src.transformations' is absent from the `packages` configuration.
2023-09-26T21:02:36,161   !!

2023-09-26T21:02:36,162           ********************************************************************************
2023-09-26T21:02:36,163           ############################
2023-09-26T21:02:36,164           # Package would be ignored #
2023-09-26T21:02:36,166           ############################
2023-09-26T21:02:36,166           Python recognizes 'MDAnalysis.lib.src.transformations' as an importable package[^1],
2023-09-26T21:02:36,167           but it is absent from setuptools' `packages` configuration.

2023-09-26T21:02:36,168           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-26T21:02:36,169           package, please make sure that 'MDAnalysis.lib.src.transformations' is explicitly added
2023-09-26T21:02:36,169           to the `packages` configuration field.

2023-09-26T21:02:36,171           Alternatively, you can also rely on setuptools' discovery methods
2023-09-26T21:02:36,172           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-26T21:02:36,173           instead of `find_packages(...)`/`find:`).

2023-09-26T21:02:36,174           You can read more about "package discovery" on setuptools documentation page:

2023-09-26T21:02:36,176           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-26T21:02:36,181           If you don't want 'MDAnalysis.lib.src.transformations' to be distributed and are
2023-09-26T21:02:36,183           already explicitly excluding 'MDAnalysis.lib.src.transformations' via
2023-09-26T21:02:36,184           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-26T21:02:36,185           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-26T21:02:36,187           combination with a more fine grained `package-data` configuration.

2023-09-26T21:02:36,192           You can read more about "package data files" on setuptools documentation page:

2023-09-26T21:02:36,194           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-26T21:02:36,195           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-26T21:02:36,196                 even if it does not contain any `.py` files.
2023-09-26T21:02:36,197                 On the other hand, currently there is no concept of package data
2023-09-26T21:02:36,197                 directory, all directories are treated like packages.
2023-09-26T21:02:36,198           ********************************************************************************

2023-09-26T21:02:36,199   !!
2023-09-26T21:02:36,200     check.warn(importable)
2023-09-26T21:02:36,200   copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-26T21:02:36,207   copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-26T21:02:36,208   copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:36,209   copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:36,210   copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:02:36,211   copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,213   copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,214   copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,220   copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,229   copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,231   copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,232   copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,232   copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,233   copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,233   copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,234   copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,234   copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,235   copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,235   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2023-09-26T21:02:36,236   copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2023-09-26T21:02:36,237   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2023-09-26T21:02:36,238   copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2023-09-26T21:02:36,238   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src
2023-09-26T21:02:36,239   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-26T21:02:36,240   copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-26T21:02:36,240   copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-26T21:02:36,241   copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-26T21:02:36,241   copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:36,242   copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:02:36,243   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:36,244   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:02:36,244   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-26T21:02:36,245   copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-26T21:02:36,245   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-26T21:02:36,246   copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-26T21:02:36,246   copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:36,247   copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:02:36,251   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2023-09-26T21:02:36,252   copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2023-09-26T21:02:36,259   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-26T21:02:36,271   copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-26T21:02:36,271   copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,272   copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,273   copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,273   copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,274   copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,275   copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,275   copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,276   copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,276   copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,278   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,279   copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,283   copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,286   copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,289   copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,292   copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,295   copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,298   copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,300   copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-26T21:02:36,303   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,304   copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,306   copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,310   copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,313   copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,315   copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:02:36,331   running build_ext
2023-09-26T21:02:36,333   building 'MDAnalysis.lib.formats.libdcd' extension
2023-09-26T21:02:36,334   creating build/temp.linux-armv7l-cpython-311
2023-09-26T21:02:36,335   creating build/temp.linux-armv7l-cpython-311/MDAnalysis
2023-09-26T21:02:36,336   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-26T21:02:36,336   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-26T21:02:36,338   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:02:36,765   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:02:36,766                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:02:36,766                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:02:36,767                    from MDAnalysis/lib/formats/libdcd.c:1188:
2023-09-26T21:02:36,768   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:02:36,768      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:02:36,769         |  ^~~~~~~
2023-09-26T21:02:36,841   In file included from MDAnalysis/lib/formats/libdcd.c:1195:
2023-09-26T21:02:36,841   MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’:
2023-09-26T21:02:36,842   MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:02:36,843     562 |       if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
2023-09-26T21:02:36,844         |                     ^~
2023-09-26T21:02:36,846   MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’:
2023-09-26T21:02:36,847   MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable]
2023-09-26T21:02:36,848     698 |   struct tm *tmbuf;
2023-09-26T21:02:36,848         |              ^~~~~
2023-09-26T21:02:36,849   MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable]
2023-09-26T21:02:36,850     697 |   time_t cur_time;
2023-09-26T21:02:36,851         |          ^~~~~~~~
2023-09-26T21:02:40,375   In file included from MDAnalysis/lib/formats/include/readdcd.h:25:
2023-09-26T21:02:40,375   MDAnalysis/lib/formats/include/endianswap.h: At top level:
2023-09-26T21:02:40,376   MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2023-09-26T21:02:40,377      96 | static void swap2_aligned(void *v, long ndata) {
2023-09-26T21:02:40,377         |             ^~~~~~~~~~~~~
2023-09-26T21:02:40,378   MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2023-09-26T21:02:40,378      32 | static void swap2_unaligned(void *v, long ndata) {
2023-09-26T21:02:40,379         |             ^~~~~~~~~~~~~~~
2023-09-26T21:02:40,379   In file included from MDAnalysis/lib/formats/libdcd.c:1194:
2023-09-26T21:02:40,380   MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-09-26T21:02:40,380     453 | static int fio_write_str(fio_fd fd, const char *str) {
2023-09-26T21:02:40,381         |            ^~~~~~~~~~~~~
2023-09-26T21:02:40,382   MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-09-26T21:02:40,382     449 | static int fio_read_int32(fio_fd fd, int *i) {
2023-09-26T21:02:40,383         |            ^~~~~~~~~~~~~~
2023-09-26T21:03:38,300   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:03:38,504   building 'MDAnalysis.lib.c_distances' extension
2023-09-26T21:03:38,505   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:03:38,952   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:03:38,953                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:03:38,953                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:03:38,954                    from MDAnalysis/lib/c_distances.c:1188:
2023-09-26T21:03:38,955   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:03:38,955      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:03:38,956         |  ^~~~~~~
2023-09-26T21:04:39,184   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:04:39,465   building 'MDAnalysis.lib.c_distances_openmp' extension
2023-09-26T21:04:39,466   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:04:39,889   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:04:39,890                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:04:39,891                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:04:39,892                    from MDAnalysis/lib/c_distances_openmp.c:1199:
2023-09-26T21:04:39,892   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:04:39,893      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:04:39,893         |  ^~~~~~~
2023-09-26T21:04:55,768   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib/arm-linux-gnueabihf -lm -lgomp -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -fopenmp
2023-09-26T21:04:55,924   building 'MDAnalysis.lib.qcprot' extension
2023-09-26T21:04:55,924   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:04:56,317   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:04:56,318                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:04:56,318                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:04:56,319                    from MDAnalysis/lib/qcprot.c:1182:
2023-09-26T21:04:56,320   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:04:56,320      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:04:56,321         |  ^~~~~~~
2023-09-26T21:04:56,400   MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2023-09-26T21:04:56,404   MDAnalysis/lib/qcprot.c:5090:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:04:56,405    5090 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2023-09-26T21:04:56,406         |                                   ^
2023-09-26T21:04:56,412   MDAnalysis/lib/qcprot.c:5298:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:04:56,412    5298 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2023-09-26T21:04:56,413         |                                   ^
2023-09-26T21:05:13,157   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:05:13,271   building 'MDAnalysis.lib._transformations' extension
2023-09-26T21:05:13,272   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src
2023-09-26T21:05:13,272   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-26T21:05:13,273   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:05:13,651   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:05:13,651                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:05:13,652                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:05:13,652                    from MDAnalysis/lib/src/transformations/transformations.c:73:
2023-09-26T21:05:13,653   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:05:13,653      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:05:13,654         |  ^~~~~~~
2023-09-26T21:05:13,726   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’:
2023-09-26T21:05:13,727   MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,727    1845 |                 #pragma vector always
2023-09-26T21:05:13,728         |
2023-09-26T21:05:13,730   MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,731    1962 |                     #pragma vector always
2023-09-26T21:05:13,731         |
2023-09-26T21:05:13,732   MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,733    1986 |                     #pragma vector always
2023-09-26T21:05:13,734         |
2023-09-26T21:05:13,736   MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’:
2023-09-26T21:05:13,738   MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations]
2023-09-26T21:05:13,739    2122 |     if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) {
2023-09-26T21:05:13,739         |     ^~
2023-09-26T21:05:13,740   In file included from /usr/include/python3.11/Python.h:51,
2023-09-26T21:05:13,740                    from MDAnalysis/lib/src/transformations/transformations.c:68:
2023-09-26T21:05:13,741   /usr/include/python3.11/unicodeobject.h:177:43: note: declared here
2023-09-26T21:05:13,742     177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize(
2023-09-26T21:05:13,742         |                                           ^~~~~~~~~~~~~~~~~
2023-09-26T21:05:13,784   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’:
2023-09-26T21:05:13,785   MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,786    3427 |             #pragma vector always
2023-09-26T21:05:13,786         |
2023-09-26T21:05:13,788   MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,789    3508 |                 #pragma vector always
2023-09-26T21:05:13,790         |
2023-09-26T21:05:13,795   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’:
2023-09-26T21:05:13,796   MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,797    3610 |             #pragma vector always
2023-09-26T21:05:13,797         |
2023-09-26T21:05:13,798   MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,798    3615 |             #pragma vector always
2023-09-26T21:05:13,799         |
2023-09-26T21:05:13,802   MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,802    3679 |                 #pragma vector always
2023-09-26T21:05:13,803         |
2023-09-26T21:05:13,803   MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-26T21:05:13,804    3684 |                 #pragma vector always
2023-09-26T21:05:13,804         |
2023-09-26T21:05:13,888   MDAnalysis/lib/src/transformations/transformations.c: At top level:
2023-09-26T21:05:13,889   MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function]
2023-09-26T21:05:13,889     910 | PyConverter_DoubleVector4Copy(
2023-09-26T21:05:13,890         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:05:13,890   MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function]
2023-09-26T21:05:13,891     804 | PyConverter_DoubleArrayOrNone(
2023-09-26T21:05:13,892         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:05:13,893   MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function]
2023-09-26T21:05:13,893     774 | PyConverter_DoubleArray(
2023-09-26T21:05:13,894         | ^~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:05:20,424   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:05:20,545   building 'MDAnalysis.lib.formats.libmdaxdr' extension
2023-09-26T21:05:20,546   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-26T21:05:20,547   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:05:20,940   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:05:20,941                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:05:20,942                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:05:20,942                    from MDAnalysis/lib/formats/libmdaxdr.c:1209:
2023-09-26T21:05:20,943   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:05:20,944      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:05:20,944         |  ^~~~~~~
2023-09-26T21:05:20,979   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1215:
2023-09-26T21:05:20,980   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:05:20,980       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:05:20,980         |
2023-09-26T21:05:20,981   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1216:
2023-09-26T21:05:20,981   MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:05:20,982       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:05:20,982         |
2023-09-26T21:05:20,983   In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-26T21:05:20,983   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:05:20,984       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:05:20,984         |
2023-09-26T21:05:20,985   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1217:
2023-09-26T21:05:20,986   MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:05:20,986       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:05:20,987         |
2023-09-26T21:06:22,385   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:22,460   In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
2023-09-26T21:06:22,461   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:22,462       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:22,462         |
2023-09-26T21:06:22,466   In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
2023-09-26T21:06:22,467   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:22,467       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:22,468         |
2023-09-26T21:06:22,468   In file included from /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2023-09-26T21:06:22,469   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:22,469       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:22,470         |
2023-09-26T21:06:22,471   MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’:
2023-09-26T21:06:22,472   MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable]
2023-09-26T21:06:22,473      39 |   int result, framebytes, totalframebytes;
2023-09-26T21:06:22,474         |                           ^~~~~~~~~~~~~~~
2023-09-26T21:06:22,474   MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable]
2023-09-26T21:06:22,475      38 |   float time, lambda;
2023-09-26T21:06:22,475         |               ^~~~~~
2023-09-26T21:06:22,476   MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable]
2023-09-26T21:06:22,476      38 |   float time, lambda;
2023-09-26T21:06:22,477         |         ^~~~
2023-09-26T21:06:22,579   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:22,692   In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
2023-09-26T21:06:22,693   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:22,693       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:22,694         |
2023-09-26T21:06:22,704   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’:
2023-09-26T21:06:22,704   MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,705     501 |     while (size >= num && num_of_bits < 32)
2023-09-26T21:06:22,706         |                 ^~
2023-09-26T21:06:22,707   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’:
2023-09-26T21:06:22,707   MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,708     547 |     while (bytes[num_of_bytes] >= num)
2023-09-26T21:06:22,709         |                                ^~
2023-09-26T21:06:22,710   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’:
2023-09-26T21:06:22,710   MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,711     656 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-26T21:06:22,711         |                     ^~
2023-09-26T21:06:22,712   MDAnalysis/lib/formats/src/xdrfile.c:658:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,713     658 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-26T21:06:22,713         |                               ^
2023-09-26T21:06:22,714   MDAnalysis/lib/formats/src/xdrfile.c:666:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,715     666 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-26T21:06:22,715         |                               ^
2023-09-26T21:06:22,716   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’:
2023-09-26T21:06:22,717   MDAnalysis/lib/formats/src/xdrfile.c:706:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,718     706 |                 if (lastbits < num_of_bits)
2023-09-26T21:06:22,718         |                              ^
2023-09-26T21:06:22,720   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-26T21:06:22,720   MDAnalysis/lib/formats/src/xdrfile.c:816:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,721     816 |         if(size3>xfp->buf1size)
2023-09-26T21:06:22,721         |                 ^
2023-09-26T21:06:22,724   MDAnalysis/lib/formats/src/xdrfile.c:868:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,724     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,725         |                          ^
2023-09-26T21:06:22,725   MDAnalysis/lib/formats/src/xdrfile.c:868:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-26T21:06:22,726     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,726         |                                            ^~~
2023-09-26T21:06:22,729   MDAnalysis/lib/formats/src/xdrfile.c:794:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,730     794 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-26T21:06:22,730         |                                ^~~~~~
2023-09-26T21:06:22,731   MDAnalysis/lib/formats/src/xdrfile.c:791:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,732     791 |         int smallidx, minidx, maxidx;
2023-09-26T21:06:22,732         |                       ^~~~~~
2023-09-26T21:06:22,733   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-26T21:06:22,733   MDAnalysis/lib/formats/src/xdrfile.c:1012:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,734    1012 |         if(size3>xfp->buf1size)
2023-09-26T21:06:22,735         |                 ^
2023-09-26T21:06:22,740   MDAnalysis/lib/formats/src/xdrfile.c:1135:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,741    1135 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-26T21:06:22,741         |                         ^
2023-09-26T21:06:22,742   MDAnalysis/lib/formats/src/xdrfile.c:1141:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,743    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,743         |                          ^
2023-09-26T21:06:22,744   MDAnalysis/lib/formats/src/xdrfile.c:1141:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-26T21:06:22,744    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,745         |                                            ^~~
2023-09-26T21:06:22,749   MDAnalysis/lib/formats/src/xdrfile.c:1273:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,749    1273 |         if(tmp==(unsigned int)buf2[0])
2023-09-26T21:06:22,750         |               ^~
2023-09-26T21:06:22,751   MDAnalysis/lib/formats/src/xdrfile.c:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,751    1001 |         int errval=1;
2023-09-26T21:06:22,752         |             ^~~~~~
2023-09-26T21:06:22,753   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-26T21:06:22,754   MDAnalysis/lib/formats/src/xdrfile.c:1313:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,755    1313 |         if(size3>xfp->buf1size)
2023-09-26T21:06:22,755         |                 ^
2023-09-26T21:06:22,758   MDAnalysis/lib/formats/src/xdrfile.c:1368:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,759    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,759         |                          ^
2023-09-26T21:06:22,760   MDAnalysis/lib/formats/src/xdrfile.c:1368:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-26T21:06:22,760    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,761         |                                            ^~~
2023-09-26T21:06:22,765   MDAnalysis/lib/formats/src/xdrfile.c:1290:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,765    1290 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-26T21:06:22,766         |                                ^~~~~~
2023-09-26T21:06:22,766   MDAnalysis/lib/formats/src/xdrfile.c:1287:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,767    1287 |         int smallidx, minidx, maxidx;
2023-09-26T21:06:22,767         |                       ^~~~~~
2023-09-26T21:06:22,768   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-26T21:06:22,770   MDAnalysis/lib/formats/src/xdrfile.c:1504:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,771    1504 |         if(size3>xfp->buf1size) {
2023-09-26T21:06:22,771         |                 ^
2023-09-26T21:06:22,778   MDAnalysis/lib/formats/src/xdrfile.c:1619:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,779    1619 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-26T21:06:22,779         |                         ^
2023-09-26T21:06:22,781   MDAnalysis/lib/formats/src/xdrfile.c:1624:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-26T21:06:22,781    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,782         |                          ^
2023-09-26T21:06:22,783   MDAnalysis/lib/formats/src/xdrfile.c:1624:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-26T21:06:22,783    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-26T21:06:22,784         |                                            ^~~
2023-09-26T21:06:22,788   MDAnalysis/lib/formats/src/xdrfile.c:1734:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-26T21:06:22,789    1734 |         if(tmp==(unsigned int)buf2[0])
2023-09-26T21:06:22,790         |               ^~
2023-09-26T21:06:22,791   MDAnalysis/lib/formats/src/xdrfile.c:1494:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-26T21:06:22,791    1494 |         int errval=1;
2023-09-26T21:06:22,792         |             ^~~~~~
2023-09-26T21:06:22,808   MDAnalysis/lib/formats/src/xdrfile.c: At top level:
2023-09-26T21:06:22,810   MDAnalysis/lib/formats/src/xdrfile.c:2535:17: warning: initialization of ‘unsigned int (*)(XDR *)’ from incompatible pointer type ‘int64_t (*)(XDR *)’ {aka ‘long long int (*)(XDR *)’} [-Wincompatible-pointer-types]
2023-09-26T21:06:22,811    2535 |                 xdrstdio_getpos,                /* get offset in the stream */
2023-09-26T21:06:22,811         |                 ^~~~~~~~~~~~~~~
2023-09-26T21:06:22,812   MDAnalysis/lib/formats/src/xdrfile.c:2535:17: note: (near initialization for ‘xdrstdio_ops.x_getpostn’)
2023-09-26T21:06:22,813   MDAnalysis/lib/formats/src/xdrfile.c:2536:17: warning: initialization of ‘int (*)(XDR *, unsigned int)’ from incompatible pointer type ‘int (*)(XDR *, int64_t,  int)’ {aka ‘int (*)(XDR *, long long int,  int)’} [-Wincompatible-pointer-types]
2023-09-26T21:06:22,814    2536 |                 xdrstdio_setpos,                /* set offset in the stream */
2023-09-26T21:06:22,814         |                 ^~~~~~~~~~~~~~~
2023-09-26T21:06:22,815   MDAnalysis/lib/formats/src/xdrfile.c:2536:17: note: (near initialization for ‘xdrstdio_ops.x_setpostn’)
2023-09-26T21:06:25,246   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-26T21:06:25,247   MDAnalysis/lib/formats/src/xdrfile.c:1157:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:25,248    1157 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2023-09-26T21:06:25,248         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:25,249   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[2]’ was declared here
2023-09-26T21:06:25,249     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:25,250         |                                       ^~~~~~~~~
2023-09-26T21:06:25,251   MDAnalysis/lib/formats/src/xdrfile.c:1156:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:25,251    1156 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2023-09-26T21:06:25,252         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:25,252   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[1]’ was declared here
2023-09-26T21:06:25,253     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:25,254         |                                       ^~~~~~~~~
2023-09-26T21:06:25,254   MDAnalysis/lib/formats/src/xdrfile.c:1155:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:25,255    1155 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2023-09-26T21:06:25,256         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:25,256   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[0]’ was declared here
2023-09-26T21:06:25,257     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:25,258         |                                       ^~~~~~~~~
2023-09-26T21:06:26,228   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-26T21:06:26,229   MDAnalysis/lib/formats/src/xdrfile.c:1639:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:26,230    1639 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2023-09-26T21:06:26,231         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:26,231   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[2]’ was declared here
2023-09-26T21:06:26,232    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:26,233         |                                       ^~~~~~~~~
2023-09-26T21:06:26,234   MDAnalysis/lib/formats/src/xdrfile.c:1638:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:26,234    1638 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2023-09-26T21:06:26,235         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:26,235   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[1]’ was declared here
2023-09-26T21:06:26,236    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:26,237         |                                       ^~~~~~~~~
2023-09-26T21:06:26,238   MDAnalysis/lib/formats/src/xdrfile.c:1637:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-26T21:06:26,238    1637 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2023-09-26T21:06:26,238         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-26T21:06:26,239   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[0]’ was declared here
2023-09-26T21:06:26,240    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-26T21:06:26,240         |                                       ^~~~~~~~~
2023-09-26T21:06:27,494   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:27,580   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
2023-09-26T21:06:27,581   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:27,582       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:27,583         |
2023-09-26T21:06:27,589   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2023-09-26T21:06:27,590   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:27,591       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:27,592         |
2023-09-26T21:06:27,594   In file included from /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2023-09-26T21:06:27,595   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:27,597       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:27,598         |
2023-09-26T21:06:27,599   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-26T21:06:27,600   MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-26T21:06:27,600      78 |     if (slen != strlen(version) + 1)
2023-09-26T21:06:27,601         |              ^~
2023-09-26T21:06:27,601   MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-26T21:06:27,603      86 |     if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
2023-09-26T21:06:27,603         |                                           ^~
2023-09-26T21:06:27,614   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’:
2023-09-26T21:06:27,615   MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized [-Wuninitialized]
2023-09-26T21:06:27,616     408 |   return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder);
2023-09-26T21:06:27,616         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:06:27,617   MDAnalysis/lib/formats/src/xdrfile_trr.c:407:8: note: ‘plcholder’ was declared here
2023-09-26T21:06:27,618     407 |   int *plcholder;
2023-09-26T21:06:27,618         |        ^~~~~~~~~
2023-09-26T21:06:28,833   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:28,890   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
2023-09-26T21:06:28,891   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:28,891       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:28,892         |
2023-09-26T21:06:28,903   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2023-09-26T21:06:28,904   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:28,904       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:28,905         |
2023-09-26T21:06:28,905   In file included from /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-26T21:06:28,906   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:28,906       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:28,907         |
2023-09-26T21:06:29,030   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:29,071   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
2023-09-26T21:06:29,072   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:29,072       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:29,073         |
2023-09-26T21:06:29,083   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2023-09-26T21:06:29,084   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:29,085       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:29,085         |
2023-09-26T21:06:29,086   In file included from /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-26T21:06:29,086   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-26T21:06:29,087       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-26T21:06:29,087         |
2023-09-26T21:06:29,245   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:06:29,465   building 'MDAnalysis.lib.formats.cython_util' extension
2023-09-26T21:06:29,467   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-26T21:06:30,323   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:06:30,324                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:06:30,325                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:06:30,325                    from MDAnalysis/lib/formats/cython_util.c:1199:
2023-09-26T21:06:30,326   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:06:30,327      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:06:30,328         |  ^~~~~~~
2023-09-26T21:06:59,161   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:06:59,306   building 'MDAnalysis.analysis.encore.cutils' extension
2023-09-26T21:06:59,306   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-26T21:06:59,307   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-26T21:06:59,307   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-26T21:06:59,682   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:06:59,683                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:06:59,684                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:06:59,685                    from MDAnalysis/analysis/encore/cutils.c:1182:
2023-09-26T21:06:59,685   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:06:59,686      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:06:59,686         |  ^~~~~~~
2023-09-26T21:07:05,810   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:07:05,920   building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
2023-09-26T21:07:05,921   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-26T21:07:05,922   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-26T21:07:05,923   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-26T21:07:06,313   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:07:06,314                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:07:06,314                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:07:06,315                    from MDAnalysis/analysis/encore/clustering/affinityprop.c:1188:
2023-09-26T21:07:06,315   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:07:06,316      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:07:06,316         |  ^~~~~~~
2023-09-26T21:07:22,389   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-26T21:07:23,392   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:07:23,519   building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
2023-09-26T21:07:23,520   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:07:23,520   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-26T21:07:23,522   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-26T21:07:24,546   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-26T21:07:24,924   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:07:24,925                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:07:24,925                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:07:24,926                    from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:1188:
2023-09-26T21:07:24,926   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:07:24,927      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:07:24,928         |  ^~~~~~~
2023-09-26T21:07:34,124   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:07:34,253   building 'MDAnalysis.lib._cutil' extension
2023-09-26T21:07:34,255   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-26T21:07:34,518   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:07:34,519                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:07:34,520                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:07:34,520                    from MDAnalysis/lib/_cutil.cpp:1200:
2023-09-26T21:07:34,521   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:07:34,522      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:07:34,522         |  ^~~~~~~
2023-09-26T21:07:38,298   In file included from MDAnalysis/lib/_cutil.cpp:1226:
2023-09-26T21:07:38,299   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,299     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,300         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,301   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,302     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,302         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,303   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,303     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,304         |             ^~~~~~~~~~~~~~
2023-09-26T21:07:38,304   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,305     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,306         |             ^~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,306   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,307     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,308         |             ^~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,308   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,309     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,310         |             ^~~~~~~~~~~
2023-09-26T21:07:38,310   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,311     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,311         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,312   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,313     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,314         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,314   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,315     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2023-09-26T21:07:38,315         |             ^~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,316   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,316     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-26T21:07:38,317         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,317   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,318     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2023-09-26T21:07:38,318         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,319   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,320     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2023-09-26T21:07:38,320         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,321   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,321     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-26T21:07:38,322         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,322   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,323     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-26T21:07:38,323         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,324   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,325     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-26T21:07:38,325         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-26T21:07:38,326   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function]
2023-09-26T21:07:38,326     116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box)
2023-09-26T21:07:38,327         |             ^~~~~~~~~~
2023-09-26T21:08:19,817   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:08:20,122   building 'MDAnalysis.lib._augment' extension
2023-09-26T21:08:20,123   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-26T21:08:20,385   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:08:20,385                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:08:20,386                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:08:20,387                    from MDAnalysis/lib/_augment.cpp:1195:
2023-09-26T21:08:20,387   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:08:20,388      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:08:20,388         |  ^~~~~~~
2023-09-26T21:08:56,166   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:08:56,449   building 'MDAnalysis.lib.nsgrid' extension
2023-09-26T21:08:56,450   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-26T21:08:59,928   In file included from MDAnalysis/lib/nsgrid.cpp:1193:
2023-09-26T21:08:59,929   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,929     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,931         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,931   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,932     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,933         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,933   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,934     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,935         |             ^~~~~~~~~~~~~~
2023-09-26T21:08:59,935   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,936     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,937         |             ^~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,938   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,938     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,939         |             ^~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,939   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,940     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,940         |             ^~~~~~~~~~~
2023-09-26T21:08:59,941   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,941     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,942         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,942   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,943     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,944         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,944   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,945     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2023-09-26T21:08:59,945         |             ^~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,946   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,947     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-26T21:08:59,948         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,948   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,949     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2023-09-26T21:08:59,949         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,950   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,950     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2023-09-26T21:08:59,951         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,952   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,952     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-26T21:08:59,953         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,954   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,954     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-26T21:08:59,955         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:08:59,955   /tmp/pip-wheel-dxrl3qtm/mdanalysis_a5d2c89e66344eaa88bc9492e1e8dced/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-26T21:08:59,955     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-26T21:08:59,956         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-26T21:09:35,909   In file included from /usr/include/c++/12/vector:70,
2023-09-26T21:09:35,909                    from MDAnalysis/lib/nsgrid.cpp:1191:
2023-09-26T21:09:35,910   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-26T21:09:35,912   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-26T21:09:35,913     439 |       vector<_Tp, _Alloc>::
2023-09-26T21:09:35,914         |       ^~~~~~~~~~~~~~~~~~~
2023-09-26T21:09:35,951   In file included from /usr/include/c++/12/vector:64:
2023-09-26T21:09:35,952   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-26T21:09:35,952       inlined from ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’ at MDAnalysis/lib/nsgrid.cpp:21309:39:
2023-09-26T21:09:35,953   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-26T21:09:35,954    1287 |           _M_realloc_insert(end(), __x);
2023-09-26T21:09:35,955         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-26T21:09:36,000   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-26T21:09:36,000   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-26T21:09:36,001     439 |       vector<_Tp, _Alloc>::
2023-09-26T21:09:36,002         |       ^~~~~~~~~~~~~~~~~~~
2023-09-26T21:09:36,336   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-26T21:09:36,360       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2023-09-26T21:09:36,361       inlined from ‘std::vector<double> __pyx_convert_vector_from_py_double(PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:4620:26,
2023-09-26T21:09:36,362       inlined from ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:26411:50:
2023-09-26T21:09:36,363   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-26T21:09:36,364     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-09-26T21:09:36,365         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-26T21:09:39,688   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:09:39,985   building 'MDAnalysis.coordinates.timestep' extension
2023-09-26T21:09:39,986   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-26T21:09:39,987   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-26T21:09:40,258   In file included from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T21:09:40,258                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T21:09:40,259                    from /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T21:09:40,259                    from MDAnalysis/coordinates/timestep.cpp:1196:
2023-09-26T21:09:40,260   /tmp/pip-build-env-lujaxgkr/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T21:09:40,261      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T21:09:40,261         |  ^~~~~~~
2023-09-26T21:10:07,780   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so
2023-09-26T21:10:07,972   installing to build/bdist.linux-armv7l/wheel
2023-09-26T21:10:07,973   running install
2023-09-26T21:10:07,996   running install_lib
2023-09-26T21:10:08,001   creating build/bdist.linux-armv7l
2023-09-26T21:10:08,002   creating build/bdist.linux-armv7l/wheel
2023-09-26T21:10:08,003   creating build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:08,005   creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,006   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,009   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,011   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,014   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,016   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,020   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,024   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-26T21:10:08,026   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:08,028   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:08,030   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:08,032   creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,033   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,036   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,038   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,039   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,042   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,044   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,047   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,049   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,052   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,055   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,057   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,060   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,083   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,087   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,093   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,112   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,115   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,117   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,121   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,123   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,126   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,128   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,131   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,134   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,137   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,140   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,142   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,145   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,148   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,151   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,153   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,156   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,159   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,162   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,164   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,166   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,169   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-26T21:10:08,172   creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,173   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,176   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,178   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,180   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,183   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,186   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,188   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,191   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,194   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-26T21:10:08,196   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,198   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,200   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,207   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,208   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,219   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,220   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,229   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,232   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,234   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-26T21:10:08,236   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-26T21:10:08,237   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-26T21:10:08,239   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-26T21:10:08,240   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-26T21:10:08,242   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,245   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,246   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,258   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,260   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,262   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,265   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,276   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,278   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2023-09-26T21:10:08,279   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2023-09-26T21:10:08,281   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2023-09-26T21:10:08,282   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2023-09-26T21:10:08,284   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-26T21:10:08,286   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,288   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,291   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,299   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,302   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,303   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,306   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-26T21:10:08,309   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,312   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,314   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,317   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,320   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,322   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,325   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,328   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,331   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,333   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,336   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,339   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-26T21:10:08,340   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-26T21:10:08,344   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-26T21:10:08,347   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-26T21:10:08,349   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-26T21:10:08,351   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,353   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,356   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-26T21:10:08,357   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-26T21:10:08,360   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-26T21:10:08,361   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,365   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,368   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-26T21:10:08,369   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-26T21:10:08,370   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-26T21:10:08,372   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,375   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,377   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,380   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,383   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:10:08,384   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:10:08,387   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:10:08,391   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:10:08,395   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-26T21:10:08,399   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,402   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,405   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,408   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,411   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-26T21:10:08,414   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-26T21:10:08,416   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-26T21:10:08,420   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-26T21:10:08,423   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-26T21:10:08,426   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-26T21:10:08,429   creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,430   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,432   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,435   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,437   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,440   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,443   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,445   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-26T21:10:08,448   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:08,451   creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,452   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,455   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,459   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,463   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,466   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-26T21:10:08,470   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,471   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,521   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,523   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,526   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,555   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,569   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,599   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,610   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,637   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,639   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,643   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,645   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,647   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,649   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,652   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,675   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,677   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,681   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,682   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,684   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,686   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,689   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,691   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,694   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,711   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,743   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,744   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,746   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,782   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,802   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,803   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,805   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,807   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,808   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,811   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,813   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,815   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,817   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-26T21:10:08,820   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,821   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,823   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,826   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,828   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,830   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-26T21:10:08,831   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,862   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-26T21:10:08,898   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,901   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,907   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,911   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,914   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,936   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,948   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,950   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,961   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,983   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,988   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:08,990   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:09,015   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2023-09-26T21:10:09,016   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2023-09-26T21:10:09,019   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2023-09-26T21:10:09,020   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2023-09-26T21:10:09,022   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src
2023-09-26T21:10:09,024   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-26T21:10:09,024   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-26T21:10:09,026   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-26T21:10:09,031   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-26T21:10:09,032   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:09,035   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-26T21:10:09,037   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,039   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,041   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,043   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,045   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,047   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,050   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,053   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,055   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,057   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,060   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,062   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,065   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,067   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,069   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,072   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,074   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,076   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,078   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,081   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,083   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,085   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,087   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,089   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,091   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,093   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,096   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,099   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,101   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-26T21:10:09,104   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-26T21:10:09,104   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-26T21:10:09,107   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-26T21:10:09,110   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-26T21:10:09,112   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-26T21:10:09,114   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:09,116   creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,117   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,122   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,125   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,128   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,131   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,134   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,136   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,138   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,140   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-26T21:10:09,144   creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-26T21:10:09,145   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-26T21:10:09,148   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-26T21:10:09,150   creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-26T21:10:09,151   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-26T21:10:09,154   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-26T21:10:09,156   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-26T21:10:09,158   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-26T21:10:09,160   running install_egg_info
2023-09-26T21:10:09,164   Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.0-py3.11.egg-info
2023-09-26T21:10:09,177   running install_scripts
2023-09-26T21:10:09,258   creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.0.dist-info/WHEEL
2023-09-26T21:10:09,262   creating '/tmp/pip-wheel-oyyr5aip/.tmp-rj9lde0e/MDAnalysis-2.6.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-26T21:10:09,266   adding 'MDAnalysis/__init__.py'
2023-09-26T21:10:09,269   adding 'MDAnalysis/authors.py'
2023-09-26T21:10:09,271   adding 'MDAnalysis/due.py'
2023-09-26T21:10:09,273   adding 'MDAnalysis/exceptions.py'
2023-09-26T21:10:09,277   adding 'MDAnalysis/units.py'
2023-09-26T21:10:09,279   adding 'MDAnalysis/version.py'
2023-09-26T21:10:09,282   adding 'MDAnalysis/analysis/__init__.py'
2023-09-26T21:10:09,294   adding 'MDAnalysis/analysis/align.py'
2023-09-26T21:10:09,298   adding 'MDAnalysis/analysis/atomicdistances.py'
2023-09-26T21:10:09,301   adding 'MDAnalysis/analysis/base.py'
2023-09-26T21:10:09,305   adding 'MDAnalysis/analysis/bat.py'
2023-09-26T21:10:09,308   adding 'MDAnalysis/analysis/contacts.py'
2023-09-26T21:10:09,313   adding 'MDAnalysis/analysis/density.py'
2023-09-26T21:10:09,315   adding 'MDAnalysis/analysis/dielectric.py'
2023-09-26T21:10:09,318   adding 'MDAnalysis/analysis/diffusionmap.py'
2023-09-26T21:10:09,322   adding 'MDAnalysis/analysis/dihedrals.py'
2023-09-26T21:10:09,324   adding 'MDAnalysis/analysis/distances.py'
2023-09-26T21:10:09,327   adding 'MDAnalysis/analysis/gnm.py'
2023-09-26T21:10:09,330   adding 'MDAnalysis/analysis/helix_analysis.py'
2023-09-26T21:10:09,333   adding 'MDAnalysis/analysis/leaflet.py'
2023-09-26T21:10:09,335   adding 'MDAnalysis/analysis/lineardensity.py'
2023-09-26T21:10:09,338   adding 'MDAnalysis/analysis/msd.py'
2023-09-26T21:10:09,340   adding 'MDAnalysis/analysis/nucleicacids.py'
2023-09-26T21:10:09,343   adding 'MDAnalysis/analysis/nuclinfo.py'
2023-09-26T21:10:09,347   adding 'MDAnalysis/analysis/pca.py'
2023-09-26T21:10:09,350   adding 'MDAnalysis/analysis/polymer.py'
2023-09-26T21:10:09,359   adding 'MDAnalysis/analysis/psa.py'
2023-09-26T21:10:09,363   adding 'MDAnalysis/analysis/rdf.py'
2023-09-26T21:10:09,368   adding 'MDAnalysis/analysis/rms.py'
2023-09-26T21:10:09,373   adding 'MDAnalysis/analysis/waterdynamics.py'
2023-09-26T21:10:09,375   adding 'MDAnalysis/analysis/data/__init__.py'
2023-09-26T21:10:09,377   adding 'MDAnalysis/analysis/data/filenames.py'
2023-09-26T21:10:09,381   adding 'MDAnalysis/analysis/data/janin_ref_data.npy'
2023-09-26T21:10:09,386   adding 'MDAnalysis/analysis/data/rama_ref_data.npy'
2023-09-26T21:10:09,389   adding 'MDAnalysis/analysis/encore/__init__.py'
2023-09-26T21:10:09,391   adding 'MDAnalysis/analysis/encore/bootstrap.py'
2023-09-26T21:10:09,393   adding 'MDAnalysis/analysis/encore/confdistmatrix.py'
2023-09-26T21:10:09,395   adding 'MDAnalysis/analysis/encore/covariance.py'
2023-09-26T21:10:09,429   adding 'MDAnalysis/analysis/encore/cutils.c'
2023-09-26T21:10:09,492   adding 'MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:09,496   adding 'MDAnalysis/analysis/encore/cutils.pyx'
2023-09-26T21:10:09,503   adding 'MDAnalysis/analysis/encore/similarity.py'
2023-09-26T21:10:09,505   adding 'MDAnalysis/analysis/encore/utils.py'
2023-09-26T21:10:09,508   adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py'
2023-09-26T21:10:09,511   adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py'
2023-09-26T21:10:09,512   adding 'MDAnalysis/analysis/encore/clustering/__init__.py'
2023-09-26T21:10:09,555   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c'
2023-09-26T21:10:09,685   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:09,692   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx'
2023-09-26T21:10:09,694   adding 'MDAnalysis/analysis/encore/clustering/cluster.py'
2023-09-26T21:10:09,696   adding 'MDAnalysis/analysis/encore/clustering/include/ap.h'
2023-09-26T21:10:09,698   adding 'MDAnalysis/analysis/encore/clustering/src/ap.c'
2023-09-26T21:10:09,701   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py'
2023-09-26T21:10:09,702   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py'
2023-09-26T21:10:09,704   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py'
2023-09-26T21:10:09,739   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c'
2023-09-26T21:10:09,831   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:09,836   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx'
2023-09-26T21:10:09,838   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h'
2023-09-26T21:10:09,840   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c'
2023-09-26T21:10:09,842   adding 'MDAnalysis/analysis/hbonds/__init__.py'
2023-09-26T21:10:09,844   adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py'
2023-09-26T21:10:09,847   adding 'MDAnalysis/analysis/hole2/__init__.py'
2023-09-26T21:10:09,853   adding 'MDAnalysis/analysis/hole2/hole.py'
2023-09-26T21:10:09,855   adding 'MDAnalysis/analysis/hole2/templates.py'
2023-09-26T21:10:09,858   adding 'MDAnalysis/analysis/hole2/utils.py'
2023-09-26T21:10:09,860   adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py'
2023-09-26T21:10:09,865   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py'
2023-09-26T21:10:09,869   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py'
2023-09-26T21:10:09,879   adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py'
2023-09-26T21:10:09,881   adding 'MDAnalysis/analysis/legacy/__init__.py'
2023-09-26T21:10:09,885   adding 'MDAnalysis/analysis/legacy/x3dna.py'
2023-09-26T21:10:09,889   adding 'MDAnalysis/auxiliary/EDR.py'
2023-09-26T21:10:09,892   adding 'MDAnalysis/auxiliary/XVG.py'
2023-09-26T21:10:09,895   adding 'MDAnalysis/auxiliary/__init__.py'
2023-09-26T21:10:09,900   adding 'MDAnalysis/auxiliary/base.py'
2023-09-26T21:10:09,902   adding 'MDAnalysis/auxiliary/core.py'
2023-09-26T21:10:09,905   adding 'MDAnalysis/converters/OpenMM.py'
2023-09-26T21:10:09,907   adding 'MDAnalysis/converters/OpenMMParser.py'
2023-09-26T21:10:09,909   adding 'MDAnalysis/converters/ParmEd.py'
2023-09-26T21:10:09,912   adding 'MDAnalysis/converters/ParmEdParser.py'
2023-09-26T21:10:09,917   adding 'MDAnalysis/converters/RDKit.py'
2023-09-26T21:10:09,920   adding 'MDAnalysis/converters/RDKitParser.py'
2023-09-26T21:10:09,922   adding 'MDAnalysis/converters/__init__.py'
2023-09-26T21:10:09,925   adding 'MDAnalysis/coordinates/CRD.py'
2023-09-26T21:10:09,928   adding 'MDAnalysis/coordinates/DCD.py'
2023-09-26T21:10:09,930   adding 'MDAnalysis/coordinates/DLPoly.py'
2023-09-26T21:10:09,932   adding 'MDAnalysis/coordinates/DMS.py'
2023-09-26T21:10:09,934   adding 'MDAnalysis/coordinates/FHIAIMS.py'
2023-09-26T21:10:09,936   adding 'MDAnalysis/coordinates/GMS.py'
2023-09-26T21:10:09,939   adding 'MDAnalysis/coordinates/GRO.py'
2023-09-26T21:10:09,941   adding 'MDAnalysis/coordinates/GSD.py'
2023-09-26T21:10:09,949   adding 'MDAnalysis/coordinates/H5MD.py'
2023-09-26T21:10:09,951   adding 'MDAnalysis/coordinates/INPCRD.py'
2023-09-26T21:10:09,955   adding 'MDAnalysis/coordinates/LAMMPS.py'
2023-09-26T21:10:09,957   adding 'MDAnalysis/coordinates/MMTF.py'
2023-09-26T21:10:09,959   adding 'MDAnalysis/coordinates/MOL2.py'
2023-09-26T21:10:09,961   adding 'MDAnalysis/coordinates/NAMDBIN.py'
2023-09-26T21:10:09,968   adding 'MDAnalysis/coordinates/PDB.py'
2023-09-26T21:10:09,972   adding 'MDAnalysis/coordinates/PDBQT.py'
2023-09-26T21:10:09,974   adding 'MDAnalysis/coordinates/PQR.py'
2023-09-26T21:10:09,976   adding 'MDAnalysis/coordinates/ParmEd.py'
2023-09-26T21:10:09,978   adding 'MDAnalysis/coordinates/TNG.py'
2023-09-26T21:10:09,985   adding 'MDAnalysis/coordinates/TRJ.py'
2023-09-26T21:10:09,987   adding 'MDAnalysis/coordinates/TRR.py'
2023-09-26T21:10:09,990   adding 'MDAnalysis/coordinates/TRZ.py'
2023-09-26T21:10:09,992   adding 'MDAnalysis/coordinates/TXYZ.py'
2023-09-26T21:10:09,994   adding 'MDAnalysis/coordinates/XDR.py'
2023-09-26T21:10:09,996   adding 'MDAnalysis/coordinates/XTC.py'
2023-09-26T21:10:09,999   adding 'MDAnalysis/coordinates/XYZ.py'
2023-09-26T21:10:10,004   adding 'MDAnalysis/coordinates/__init__.py'
2023-09-26T21:10:10,012   adding 'MDAnalysis/coordinates/base.py'
2023-09-26T21:10:10,016   adding 'MDAnalysis/coordinates/chain.py'
2023-09-26T21:10:10,019   adding 'MDAnalysis/coordinates/chemfiles.py'
2023-09-26T21:10:10,021   adding 'MDAnalysis/coordinates/core.py'
2023-09-26T21:10:10,024   adding 'MDAnalysis/coordinates/memory.py'
2023-09-26T21:10:10,026   adding 'MDAnalysis/coordinates/null.py'
2023-09-26T21:10:10,102   adding 'MDAnalysis/coordinates/timestep.cpp'
2023-09-26T21:10:10,353   adding 'MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:10,364   adding 'MDAnalysis/coordinates/timestep.pxd'
2023-09-26T21:10:10,368   adding 'MDAnalysis/coordinates/timestep.pyx'
2023-09-26T21:10:10,370   adding 'MDAnalysis/core/__init__.py'
2023-09-26T21:10:10,373   adding 'MDAnalysis/core/_get_readers.py'
2023-09-26T21:10:10,375   adding 'MDAnalysis/core/accessors.py'
2023-09-26T21:10:10,396   adding 'MDAnalysis/core/groups.py'
2023-09-26T21:10:10,404   adding 'MDAnalysis/core/selection.py'
2023-09-26T21:10:10,407   adding 'MDAnalysis/core/topology.py'
2023-09-26T21:10:10,419   adding 'MDAnalysis/core/topologyattrs.py'
2023-09-26T21:10:10,424   adding 'MDAnalysis/core/topologyobjects.py'
2023-09-26T21:10:10,432   adding 'MDAnalysis/core/universe.py'
2023-09-26T21:10:10,435   adding 'MDAnalysis/lib/NeighborSearch.py'
2023-09-26T21:10:10,437   adding 'MDAnalysis/lib/__init__.py'
2023-09-26T21:10:10,529   adding 'MDAnalysis/lib/_augment.cpp'
2023-09-26T21:10:10,824   adding 'MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:10,837   adding 'MDAnalysis/lib/_augment.pyx'
2023-09-26T21:10:10,936   adding 'MDAnalysis/lib/_cutil.cpp'
2023-09-26T21:10:11,313   adding 'MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:11,329   adding 'MDAnalysis/lib/_cutil.pxd'
2023-09-26T21:10:11,332   adding 'MDAnalysis/lib/_cutil.pyx'
2023-09-26T21:10:11,334   adding 'MDAnalysis/lib/_distopia.py'
2023-09-26T21:10:11,381   adding 'MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:11,525   adding 'MDAnalysis/lib/c_distances.c'
2023-09-26T21:10:11,929   adding 'MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:11,948   adding 'MDAnalysis/lib/c_distances.pyx'
2023-09-26T21:10:11,985   adding 'MDAnalysis/lib/c_distances_openmp.c'
2023-09-26T21:10:12,107   adding 'MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:12,114   adding 'MDAnalysis/lib/c_distances_openmp.pyx'
2023-09-26T21:10:12,116   adding 'MDAnalysis/lib/correlations.py'
2023-09-26T21:10:12,123   adding 'MDAnalysis/lib/distances.py'
2023-09-26T21:10:12,126   adding 'MDAnalysis/lib/log.py'
2023-09-26T21:10:12,128   adding 'MDAnalysis/lib/mdamath.py'
2023-09-26T21:10:12,233   adding 'MDAnalysis/lib/nsgrid.cpp'
2023-09-26T21:10:12,603   adding 'MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:12,620   adding 'MDAnalysis/lib/nsgrid.pyx'
2023-09-26T21:10:12,622   adding 'MDAnalysis/lib/picklable_file_io.py'
2023-09-26T21:10:12,624   adding 'MDAnalysis/lib/pkdtree.py'
2023-09-26T21:10:12,667   adding 'MDAnalysis/lib/qcprot.c'
2023-09-26T21:10:12,776   adding 'MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:12,783   adding 'MDAnalysis/lib/qcprot.pyx'
2023-09-26T21:10:12,790   adding 'MDAnalysis/lib/transformations.py'
2023-09-26T21:10:12,802   adding 'MDAnalysis/lib/util.py'
2023-09-26T21:10:12,804   adding 'MDAnalysis/lib/formats/__init__.py'
2023-09-26T21:10:12,890   adding 'MDAnalysis/lib/formats/cython_util.c'
2023-09-26T21:10:13,130   adding 'MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:13,140   adding 'MDAnalysis/lib/formats/cython_util.pxd'
2023-09-26T21:10:13,142   adding 'MDAnalysis/lib/formats/cython_util.pyx'
2023-09-26T21:10:13,263   adding 'MDAnalysis/lib/formats/libdcd.c'
2023-09-26T21:10:13,677   adding 'MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:13,694   adding 'MDAnalysis/lib/formats/libdcd.pxd'
2023-09-26T21:10:13,697   adding 'MDAnalysis/lib/formats/libdcd.pyx'
2023-09-26T21:10:13,817   adding 'MDAnalysis/lib/formats/libmdaxdr.c'
2023-09-26T21:10:14,266   adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T21:10:14,284   adding 'MDAnalysis/lib/formats/libmdaxdr.pxd'
2023-09-26T21:10:14,287   adding 'MDAnalysis/lib/formats/libmdaxdr.pyx'
2023-09-26T21:10:14,289   adding 'MDAnalysis/lib/formats/include/endianswap.h'
2023-09-26T21:10:14,291   adding 'MDAnalysis/lib/formats/include/fastio.h'
2023-09-26T21:10:14,294   adding 'MDAnalysis/lib/formats/include/readdcd.h'
2023-09-26T21:10:14,296   adding 'MDAnalysis/lib/formats/include/trr_seek.h'
2023-09-26T21:10:14,298   adding 'MDAnalysis/lib/formats/include/xdrfile.h'
2023-09-26T21:10:14,300   adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h'
2023-09-26T21:10:14,301   adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h'
2023-09-26T21:10:14,302   adding 'MDAnalysis/lib/formats/include/xtc_seek.h'
2023-09-26T21:10:14,304   adding 'MDAnalysis/lib/formats/src/trr_seek.c'
2023-09-26T21:10:14,311   adding 'MDAnalysis/lib/formats/src/xdrfile.c'
2023-09-26T21:10:14,313   adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c'
2023-09-26T21:10:14,314   adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c'
2023-09-26T21:10:14,316   adding 'MDAnalysis/lib/formats/src/xtc_seek.c'
2023-09-26T21:10:14,319   adding 'MDAnalysis/lib/include/calc_distances.h'
2023-09-26T21:10:14,321   adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd'
2023-09-26T21:10:14,323   adding 'MDAnalysis/lib/src/transformations/AUTHOR'
2023-09-26T21:10:14,324   adding 'MDAnalysis/lib/src/transformations/LICENCE'
2023-09-26T21:10:14,334   adding 'MDAnalysis/lib/src/transformations/transformations.c'
2023-09-26T21:10:14,337   adding 'MDAnalysis/selections/__init__.py'
2023-09-26T21:10:14,339   adding 'MDAnalysis/selections/base.py'
2023-09-26T21:10:14,340   adding 'MDAnalysis/selections/charmm.py'
2023-09-26T21:10:14,342   adding 'MDAnalysis/selections/gromacs.py'
2023-09-26T21:10:14,343   adding 'MDAnalysis/selections/jmol.py'
2023-09-26T21:10:14,345   adding 'MDAnalysis/selections/pymol.py'
2023-09-26T21:10:14,346   adding 'MDAnalysis/selections/vmd.py'
2023-09-26T21:10:14,348   adding 'MDAnalysis/tests/__init__.py'
2023-09-26T21:10:14,349   adding 'MDAnalysis/tests/datafiles.py'
2023-09-26T21:10:14,351   adding 'MDAnalysis/topology/CRDParser.py'
2023-09-26T21:10:14,353   adding 'MDAnalysis/topology/DLPolyParser.py'
2023-09-26T21:10:14,355   adding 'MDAnalysis/topology/DMSParser.py'
2023-09-26T21:10:14,356   adding 'MDAnalysis/topology/ExtendedPDBParser.py'
2023-09-26T21:10:14,357   adding 'MDAnalysis/topology/FHIAIMSParser.py'
2023-09-26T21:10:14,359   adding 'MDAnalysis/topology/GMSParser.py'
2023-09-26T21:10:14,360   adding 'MDAnalysis/topology/GROParser.py'
2023-09-26T21:10:14,361   adding 'MDAnalysis/topology/GSDParser.py'
2023-09-26T21:10:14,363   adding 'MDAnalysis/topology/HoomdXMLParser.py'
2023-09-26T21:10:14,366   adding 'MDAnalysis/topology/ITPParser.py'
2023-09-26T21:10:14,369   adding 'MDAnalysis/topology/LAMMPSParser.py'
2023-09-26T21:10:14,370   adding 'MDAnalysis/topology/MMTFParser.py'
2023-09-26T21:10:14,372   adding 'MDAnalysis/topology/MOL2Parser.py'
2023-09-26T21:10:14,373   adding 'MDAnalysis/topology/MinimalParser.py'
2023-09-26T21:10:14,376   adding 'MDAnalysis/topology/PDBParser.py'
2023-09-26T21:10:14,377   adding 'MDAnalysis/topology/PDBQTParser.py'
2023-09-26T21:10:14,379   adding 'MDAnalysis/topology/PQRParser.py'
2023-09-26T21:10:14,381   adding 'MDAnalysis/topology/PSFParser.py'
2023-09-26T21:10:14,382   adding 'MDAnalysis/topology/ParmEdParser.py'
2023-09-26T21:10:14,385   adding 'MDAnalysis/topology/TOPParser.py'
2023-09-26T21:10:14,387   adding 'MDAnalysis/topology/TPRParser.py'
2023-09-26T21:10:14,389   adding 'MDAnalysis/topology/TXYZParser.py'
2023-09-26T21:10:14,390   adding 'MDAnalysis/topology/XYZParser.py'
2023-09-26T21:10:14,392   adding 'MDAnalysis/topology/__init__.py'
2023-09-26T21:10:14,394   adding 'MDAnalysis/topology/base.py'
2023-09-26T21:10:14,395   adding 'MDAnalysis/topology/core.py'
2023-09-26T21:10:14,397   adding 'MDAnalysis/topology/guessers.py'
2023-09-26T21:10:14,400   adding 'MDAnalysis/topology/tables.py'
2023-09-26T21:10:14,401   adding 'MDAnalysis/topology/tpr/__init__.py'
2023-09-26T21:10:14,403   adding 'MDAnalysis/topology/tpr/obj.py'
2023-09-26T21:10:14,405   adding 'MDAnalysis/topology/tpr/setting.py'
2023-09-26T21:10:14,408   adding 'MDAnalysis/topology/tpr/utils.py'
2023-09-26T21:10:14,411   adding 'MDAnalysis/transformations/__init__.py'
2023-09-26T21:10:14,412   adding 'MDAnalysis/transformations/base.py'
2023-09-26T21:10:14,414   adding 'MDAnalysis/transformations/boxdimensions.py'
2023-09-26T21:10:14,415   adding 'MDAnalysis/transformations/fit.py'
2023-09-26T21:10:14,417   adding 'MDAnalysis/transformations/nojump.py'
2023-09-26T21:10:14,419   adding 'MDAnalysis/transformations/positionaveraging.py'
2023-09-26T21:10:14,420   adding 'MDAnalysis/transformations/rotate.py'
2023-09-26T21:10:14,422   adding 'MDAnalysis/transformations/translate.py'
2023-09-26T21:10:14,423   adding 'MDAnalysis/transformations/wrap.py'
2023-09-26T21:10:14,425   adding 'MDAnalysis/visualization/__init__.py'
2023-09-26T21:10:14,428   adding 'MDAnalysis/visualization/streamlines.py'
2023-09-26T21:10:14,431   adding 'MDAnalysis/visualization/streamlines_3D.py'
2023-09-26T21:10:14,434   adding 'MDAnalysis-2.6.0.dist-info/AUTHORS'
2023-09-26T21:10:14,438   adding 'MDAnalysis-2.6.0.dist-info/LICENSE'
2023-09-26T21:10:14,443   adding 'MDAnalysis-2.6.0.dist-info/METADATA'
2023-09-26T21:10:14,444   adding 'MDAnalysis-2.6.0.dist-info/WHEEL'
2023-09-26T21:10:14,445   adding 'MDAnalysis-2.6.0.dist-info/top_level.txt'
2023-09-26T21:10:14,449   adding 'MDAnalysis-2.6.0.dist-info/RECORD'
2023-09-26T21:10:14,554   removing build/bdist.linux-armv7l/wheel
2023-09-26T21:10:14,836   Building wheel for mdanalysis (pyproject.toml): finished with status 'done'
2023-09-26T21:10:15,068   Created wheel for mdanalysis: filename=MDAnalysis-2.6.0-cp311-cp311-linux_armv7l.whl size=9549221 sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371
2023-09-26T21:10:15,069   Stored in directory: /tmp/pip-ephem-wheel-cache-i74vl3bf/wheels/8f/1a/a6/4d29801e9b64c76c6bdbc39fc1900792a36072289f2432529f
2023-09-26T21:10:15,110 Successfully built mdanalysis
2023-09-26T21:10:15,341 Removed build tracker: '/tmp/pip-build-tracker-xg729j9k'