2023-09-26T23:42:27,876 Created temporary directory: /tmp/pip-build-tracker-xdrghx63
2023-09-26T23:42:27,877 Initialized build tracking at /tmp/pip-build-tracker-xdrghx63
2023-09-26T23:42:27,878 Created build tracker: /tmp/pip-build-tracker-xdrghx63
2023-09-26T23:42:27,878 Entered build tracker: /tmp/pip-build-tracker-xdrghx63
2023-09-26T23:42:27,879 Created temporary directory: /tmp/pip-wheel-cmejb12f
2023-09-26T23:42:27,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-fo8je229
2023-09-26T23:42:27,907 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-26T23:42:27,911 2 location(s) to search for versions of crispr-hmm:
2023-09-26T23:42:27,911 * https://pypi.org/simple/crispr-hmm/
2023-09-26T23:42:27,911 * https://www.piwheels.org/simple/crispr-hmm/
2023-09-26T23:42:27,912 Fetching project page and analyzing links: https://pypi.org/simple/crispr-hmm/
2023-09-26T23:42:27,913 Getting page https://pypi.org/simple/crispr-hmm/
2023-09-26T23:42:27,914 Found index url https://pypi.org/simple/
2023-09-26T23:42:28,144 Fetched page https://pypi.org/simple/crispr-hmm/ as application/vnd.pypi.simple.v1+json
2023-09-26T23:42:28,146   Found link https://files.pythonhosted.org/packages/28/c1/971d3cc4234d92fc85b2f580b83a2da7769f2f3166a431bdf9d4308b727e/CRISPR_HMM-0.0.3.tar.gz (from https://pypi.org/simple/crispr-hmm/), version: 0.0.3
2023-09-26T23:42:28,147   Found link https://files.pythonhosted.org/packages/71/b5/1a1818b8e23478bbb452131db15189de00cf581a099efab6eb58f786b193/CRISPR_HMM-1.0.0.tar.gz (from https://pypi.org/simple/crispr-hmm/), version: 1.0.0
2023-09-26T23:42:28,147 Fetching project page and analyzing links: https://www.piwheels.org/simple/crispr-hmm/
2023-09-26T23:42:28,148 Getting page https://www.piwheels.org/simple/crispr-hmm/
2023-09-26T23:42:28,149 Found index url https://www.piwheels.org/simple/
2023-09-26T23:42:28,317 Fetched page https://www.piwheels.org/simple/crispr-hmm/ as text/html
2023-09-26T23:42:28,320   Skipping link: No binaries permitted for crispr-hmm: https://www.piwheels.org/simple/crispr-hmm/CRISPR_HMM-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=6de9df15a72591cefb0134b0d2129834671c467fdb76e253f69c2ced324847ed (from https://www.piwheels.org/simple/crispr-hmm/)
2023-09-26T23:42:28,320   Skipping link: No binaries permitted for crispr-hmm: https://www.piwheels.org/simple/crispr-hmm/CRISPR_HMM-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=6de9df15a72591cefb0134b0d2129834671c467fdb76e253f69c2ced324847ed (from https://www.piwheels.org/simple/crispr-hmm/)
2023-09-26T23:42:28,321   Skipping link: No binaries permitted for crispr-hmm: https://www.piwheels.org/simple/crispr-hmm/CRISPR_HMM-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=93491fb32aba98c5aceebad02242efdb4481b968b638e153569d8bbdd3ce2fbd (from https://www.piwheels.org/simple/crispr-hmm/)
2023-09-26T23:42:28,322   Skipping link: No binaries permitted for crispr-hmm: https://www.piwheels.org/simple/crispr-hmm/CRISPR_HMM-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=93491fb32aba98c5aceebad02242efdb4481b968b638e153569d8bbdd3ce2fbd (from https://www.piwheels.org/simple/crispr-hmm/)
2023-09-26T23:42:28,322 Skipping link: not a file: https://www.piwheels.org/simple/crispr-hmm/
2023-09-26T23:42:28,323 Skipping link: not a file: https://pypi.org/simple/crispr-hmm/
2023-09-26T23:42:28,341 Given no hashes to check 1 links for project 'crispr-hmm': discarding no candidates
2023-09-26T23:42:28,360 Collecting crispr-hmm==1.0.0
2023-09-26T23:42:28,362   Created temporary directory: /tmp/pip-unpack-dr6y8s93
2023-09-26T23:42:28,573   Downloading CRISPR_HMM-1.0.0.tar.gz (134 kB)
2023-09-26T23:42:28,699   Added crispr-hmm==1.0.0 from https://files.pythonhosted.org/packages/71/b5/1a1818b8e23478bbb452131db15189de00cf581a099efab6eb58f786b193/CRISPR_HMM-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-xdrghx63'
2023-09-26T23:42:28,706   Created temporary directory: /tmp/pip-build-env-e5kmepq2
2023-09-26T23:42:28,710   Installing build dependencies: started
2023-09-26T23:42:28,712   Running command pip subprocess to install build dependencies
2023-09-26T23:42:29,883   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-26T23:42:30,375   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-26T23:42:31,946   Collecting setuptools
2023-09-26T23:42:31,947     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-26T23:42:31,953     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-26T23:42:32,165   Collecting wheel
2023-09-26T23:42:32,181     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-26T23:42:33,567   Collecting Cython
2023-09-26T23:42:33,568     Obtaining dependency information for Cython from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-26T23:42:33,573     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-26T23:42:34,293     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T23:42:34,300     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T23:42:34,307     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T23:42:34,314     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T23:42:34,321     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-26T23:42:34,693   Collecting numpy
2023-09-26T23:42:35,630     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB)
2023-09-26T23:42:36,140   Collecting pathos
2023-09-26T23:42:36,153     Downloading https://www.piwheels.org/simple/pathos/pathos-0.3.1-py3-none-any.whl (82 kB)
2023-09-26T23:42:36,174        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.1/82.1 kB 6.2 MB/s eta 0:00:00
2023-09-26T23:42:36,575   Collecting ppft>=1.7.6.7 (from pathos)
2023-09-26T23:42:36,587     Downloading https://www.piwheels.org/simple/ppft/ppft-1.7.6.7-py3-none-any.whl (56 kB)
2023-09-26T23:42:36,605        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.8/56.8 kB 4.6 MB/s eta 0:00:00
2023-09-26T23:42:36,703   Collecting dill>=0.3.7 (from pathos)
2023-09-26T23:42:36,716     Downloading https://www.piwheels.org/simple/dill/dill-0.3.7-py3-none-any.whl (115 kB)
2023-09-26T23:42:36,738        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 115.3/115.3 kB 7.6 MB/s eta 0:00:00
2023-09-26T23:42:36,897   Collecting pox>=0.3.3 (from pathos)
2023-09-26T23:42:36,913     Downloading https://www.piwheels.org/simple/pox/pox-0.3.3-py3-none-any.whl (29 kB)
2023-09-26T23:42:37,135   Collecting multiprocess>=0.70.15 (from pathos)
2023-09-26T23:42:37,136     Obtaining dependency information for multiprocess>=0.70.15 from https://files.pythonhosted.org/packages/e7/41/96ac938770ba6e7d5ae1d8c9cafebac54b413549042c6260f0d0a6ec6622/multiprocess-0.70.15-py311-none-any.whl.metadata
2023-09-26T23:42:37,277     Downloading multiprocess-0.70.15-py311-none-any.whl.metadata (7.2 kB)
2023-09-26T23:42:37,349   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-26T23:42:37,385   Using cached Cython-3.0.2-py2.py3-none-any.whl (1.2 MB)
2023-09-26T23:42:37,416   Downloading multiprocess-0.70.15-py311-none-any.whl (135 kB)
2023-09-26T23:42:37,473      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 135.4/135.4 kB 2.5 MB/s eta 0:00:00
2023-09-26T23:42:40,522   Installing collected packages: wheel, setuptools, ppft, pox, numpy, dill, Cython, multiprocess, pathos
2023-09-26T23:42:40,739     Creating /tmp/pip-build-env-e5kmepq2/overlay/local/bin
2023-09-26T23:42:40,741     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/wheel to 755
2023-09-26T23:42:52,359     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/f2py to 755
2023-09-26T23:42:52,362     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/f2py3 to 755
2023-09-26T23:42:52,365     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/f2py3.11 to 755
2023-09-26T23:42:55,605     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/cygdb to 755
2023-09-26T23:42:55,607     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/cython to 755
2023-09-26T23:42:55,610     changing mode of /tmp/pip-build-env-e5kmepq2/overlay/local/bin/cythonize to 755
2023-09-26T23:42:56,539   Successfully installed Cython-3.0.2 dill-0.3.7 multiprocess-0.70.15 numpy-1.25.2 pathos-0.3.1 pox-0.3.3 ppft-1.7.6.7 setuptools-68.2.2 wheel-0.41.2
2023-09-26T23:42:57,179   Installing build dependencies: finished with status 'done'
2023-09-26T23:42:57,182   Getting requirements to build wheel: started
2023-09-26T23:42:57,184   Running command Getting requirements to build wheel
2023-09-26T23:42:59,732   /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-cmejb12f/crispr-hmm_e6b816c93e14476385433627cfca898d/crispr_hmm/fast_viterbi.pyx
2023-09-26T23:42:59,733     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-26T23:43:04,054   Compiling crispr_hmm/fast_viterbi.pyx because it changed.
2023-09-26T23:43:04,054   [1/1] Cythonizing crispr_hmm/fast_viterbi.pyx
2023-09-26T23:43:04,471   Getting requirements to build wheel: finished with status 'done'
2023-09-26T23:43:04,513   Created temporary directory: /tmp/pip-modern-metadata-avyhqc9z
2023-09-26T23:43:04,515   Preparing metadata (pyproject.toml): started
2023-09-26T23:43:04,516   Running command Preparing metadata (pyproject.toml)
2023-09-26T23:43:06,017   /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored.
2023-09-26T23:43:06,017   !!

2023-09-26T23:43:06,018           ********************************************************************************
2023-09-26T23:43:06,019           ##########################################################################
2023-09-26T23:43:06,020           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-09-26T23:43:06,020           ##########################################################################

2023-09-26T23:43:06,021           The following seems to be defined outside of `pyproject.toml`:

2023-09-26T23:43:06,023           `dependencies = ['numpy', 'cython', 'pathos']`

2023-09-26T23:43:06,024           According to the spec (see the link below), however, setuptools CANNOT
2023-09-26T23:43:06,024           consider this value unless `dependencies` is listed as `dynamic`.

2023-09-26T23:43:06,026           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-09-26T23:43:06,027           For the time being, `setuptools` will still consider the given value (as a
2023-09-26T23:43:06,027           **transitional** measure), but please note that future releases of setuptools will
2023-09-26T23:43:06,028           follow strictly the standard.

2023-09-26T23:43:06,029           To prevent this warning, you can list `dependencies` under `dynamic` or alternatively
2023-09-26T23:43:06,029           remove the `[project]` table from your file and rely entirely on other means of
2023-09-26T23:43:06,030           configuration.

2023-09-26T23:43:06,031           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-09-26T23:43:06,031           or your builds will no longer be supported.
2023-09-26T23:43:06,032           ********************************************************************************

2023-09-26T23:43:06,033   !!
2023-09-26T23:43:06,033     _handle_missing_dynamic(dist, project_table)
2023-09-26T23:43:06,271   running dist_info
2023-09-26T23:43:06,279   creating /tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info
2023-09-26T23:43:06,285   writing /tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/PKG-INFO
2023-09-26T23:43:06,290   writing dependency_links to /tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/dependency_links.txt
2023-09-26T23:43:06,292   writing requirements to /tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/requires.txt
2023-09-26T23:43:06,293   writing top-level names to /tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/top_level.txt
2023-09-26T23:43:06,294   writing manifest file '/tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/SOURCES.txt'
2023-09-26T23:43:06,321   reading manifest file '/tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/SOURCES.txt'
2023-09-26T23:43:06,323   reading manifest template 'MANIFEST.in'
2023-09-26T23:43:06,324   adding license file 'LICENSE'
2023-09-26T23:43:06,326   writing manifest file '/tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM.egg-info/SOURCES.txt'
2023-09-26T23:43:06,327   creating '/tmp/pip-modern-metadata-avyhqc9z/CRISPR_HMM-1.0.0.dist-info'
2023-09-26T23:43:06,540   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-26T23:43:06,545   Source in /tmp/pip-wheel-cmejb12f/crispr-hmm_e6b816c93e14476385433627cfca898d has version 1.0.0, which satisfies requirement crispr-hmm==1.0.0 from https://files.pythonhosted.org/packages/71/b5/1a1818b8e23478bbb452131db15189de00cf581a099efab6eb58f786b193/CRISPR_HMM-1.0.0.tar.gz
2023-09-26T23:43:06,546   Removed crispr-hmm==1.0.0 from https://files.pythonhosted.org/packages/71/b5/1a1818b8e23478bbb452131db15189de00cf581a099efab6eb58f786b193/CRISPR_HMM-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-xdrghx63'
2023-09-26T23:43:06,549 Created temporary directory: /tmp/pip-unpack-octfmohq
2023-09-26T23:43:06,550 Created temporary directory: /tmp/pip-unpack-dufe07de
2023-09-26T23:43:06,555 Building wheels for collected packages: crispr-hmm
2023-09-26T23:43:06,559   Created temporary directory: /tmp/pip-wheel-7m8ysjx1
2023-09-26T23:43:06,560   Destination directory: /tmp/pip-wheel-7m8ysjx1
2023-09-26T23:43:06,562   Building wheel for crispr-hmm (pyproject.toml): started
2023-09-26T23:43:06,563   Running command Building wheel for crispr-hmm (pyproject.toml)
2023-09-26T23:43:07,998   /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored.
2023-09-26T23:43:07,998   !!

2023-09-26T23:43:07,999           ********************************************************************************
2023-09-26T23:43:08,000           ##########################################################################
2023-09-26T23:43:08,001           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-09-26T23:43:08,001           ##########################################################################

2023-09-26T23:43:08,003           The following seems to be defined outside of `pyproject.toml`:

2023-09-26T23:43:08,004           `dependencies = ['numpy', 'cython', 'pathos']`

2023-09-26T23:43:08,005           According to the spec (see the link below), however, setuptools CANNOT
2023-09-26T23:43:08,005           consider this value unless `dependencies` is listed as `dynamic`.

2023-09-26T23:43:08,006           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-09-26T23:43:08,007           For the time being, `setuptools` will still consider the given value (as a
2023-09-26T23:43:08,007           **transitional** measure), but please note that future releases of setuptools will
2023-09-26T23:43:08,008           follow strictly the standard.

2023-09-26T23:43:08,009           To prevent this warning, you can list `dependencies` under `dynamic` or alternatively
2023-09-26T23:43:08,009           remove the `[project]` table from your file and rely entirely on other means of
2023-09-26T23:43:08,010           configuration.

2023-09-26T23:43:08,011           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-09-26T23:43:08,011           or your builds will no longer be supported.
2023-09-26T23:43:08,012           ********************************************************************************

2023-09-26T23:43:08,013   !!
2023-09-26T23:43:08,013     _handle_missing_dynamic(dist, project_table)
2023-09-26T23:43:08,219   running bdist_wheel
2023-09-26T23:43:08,246   running build
2023-09-26T23:43:08,247   running build_py
2023-09-26T23:43:08,253   creating build
2023-09-26T23:43:08,253   creating build/lib.linux-armv7l-cpython-311
2023-09-26T23:43:08,254   creating build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,255   copying crispr_hmm/__init__.py -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,257   copying crispr_hmm/hmm_alignment_baum_welch.py -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,260   copying crispr_hmm/util.py -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,262   copying crispr_hmm/hmm_alignment.py -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,265   running egg_info
2023-09-26T23:43:08,270   writing CRISPR_HMM.egg-info/PKG-INFO
2023-09-26T23:43:08,272   writing dependency_links to CRISPR_HMM.egg-info/dependency_links.txt
2023-09-26T23:43:08,274   writing requirements to CRISPR_HMM.egg-info/requires.txt
2023-09-26T23:43:08,275   writing top-level names to CRISPR_HMM.egg-info/top_level.txt
2023-09-26T23:43:08,284   reading manifest file 'CRISPR_HMM.egg-info/SOURCES.txt'
2023-09-26T23:43:08,286   reading manifest template 'MANIFEST.in'
2023-09-26T23:43:08,287   adding license file 'LICENSE'
2023-09-26T23:43:08,289   writing manifest file 'CRISPR_HMM.egg-info/SOURCES.txt'
2023-09-26T23:43:08,290   copying crispr_hmm/fast_viterbi.c -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,311   copying crispr_hmm/fast_viterbi.pyx -> build/lib.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,313   running build_ext
2023-09-26T23:43:08,319   building 'crispr_hmm.fast_viterbi' extension
2023-09-26T23:43:08,320   creating build/temp.linux-armv7l-cpython-311
2023-09-26T23:43:08,320   creating build/temp.linux-armv7l-cpython-311/crispr_hmm
2023-09-26T23:43:08,321   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c crispr_hmm/fast_viterbi.c -o build/temp.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.o
2023-09-26T23:43:08,713   In file included from /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-26T23:43:08,713                    from /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-26T23:43:08,714                    from /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-26T23:43:08,715                    from crispr_hmm/fast_viterbi.c:1167:
2023-09-26T23:43:08,716   /tmp/pip-build-env-e5kmepq2/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-26T23:43:08,716      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-26T23:43:08,717         |  ^~~~~~~
2023-09-26T23:43:35,085   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.cpython-311-arm-linux-gnueabihf.so
2023-09-26T23:43:35,229   installing to build/bdist.linux-armv7l/wheel
2023-09-26T23:43:35,229   running install
2023-09-26T23:43:35,253   running install_lib
2023-09-26T23:43:35,259   creating build/bdist.linux-armv7l
2023-09-26T23:43:35,260   creating build/bdist.linux-armv7l/wheel
2023-09-26T23:43:35,261   creating build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,262   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/__init__.py -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,264   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/hmm_alignment_baum_welch.py -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,266   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.pyx -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,268   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/util.py -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,270   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,287   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/fast_viterbi.c -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,309   copying build/lib.linux-armv7l-cpython-311/crispr_hmm/hmm_alignment.py -> build/bdist.linux-armv7l/wheel/crispr_hmm
2023-09-26T23:43:35,312   running install_egg_info
2023-09-26T23:43:35,317   Copying CRISPR_HMM.egg-info to build/bdist.linux-armv7l/wheel/CRISPR_HMM-1.0.0-py3.11.egg-info
2023-09-26T23:43:35,328   running install_scripts
2023-09-26T23:43:35,372   creating build/bdist.linux-armv7l/wheel/CRISPR_HMM-1.0.0.dist-info/WHEEL
2023-09-26T23:43:35,375   creating '/tmp/pip-wheel-7m8ysjx1/.tmp-woz37fq0/CRISPR_HMM-1.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-26T23:43:35,378   adding 'crispr_hmm/__init__.py'
2023-09-26T23:43:35,470   adding 'crispr_hmm/fast_viterbi.c'
2023-09-26T23:43:35,694   adding 'crispr_hmm/fast_viterbi.cpython-311-arm-linux-gnueabihf.so'
2023-09-26T23:43:35,703   adding 'crispr_hmm/fast_viterbi.pyx'
2023-09-26T23:43:35,706   adding 'crispr_hmm/hmm_alignment.py'
2023-09-26T23:43:35,710   adding 'crispr_hmm/hmm_alignment_baum_welch.py'
2023-09-26T23:43:35,712   adding 'crispr_hmm/util.py'
2023-09-26T23:43:35,713   adding 'CRISPR_HMM-1.0.0.dist-info/LICENSE'
2023-09-26T23:43:35,715   adding 'CRISPR_HMM-1.0.0.dist-info/METADATA'
2023-09-26T23:43:35,716   adding 'CRISPR_HMM-1.0.0.dist-info/WHEEL'
2023-09-26T23:43:35,716   adding 'CRISPR_HMM-1.0.0.dist-info/top_level.txt'
2023-09-26T23:43:35,717   adding 'CRISPR_HMM-1.0.0.dist-info/RECORD'
2023-09-26T23:43:35,725   removing build/bdist.linux-armv7l/wheel
2023-09-26T23:43:35,913   Building wheel for crispr-hmm (pyproject.toml): finished with status 'done'
2023-09-26T23:43:35,935   Created wheel for crispr-hmm: filename=CRISPR_HMM-1.0.0-cp311-cp311-linux_armv7l.whl size=593523 sha256=760dd9927634c67326c52fe428e172208a312f066a81ce264df22f8b2d87c643
2023-09-26T23:43:35,936   Stored in directory: /tmp/pip-ephem-wheel-cache-fo8je229/wheels/56/5b/d1/bb8b302307036b4b8c474c4b74af9cb0a1356e4484c4681982
2023-09-26T23:43:35,945 Successfully built crispr-hmm
2023-09-26T23:43:35,971 Removed build tracker: '/tmp/pip-build-tracker-xdrghx63'