2023-09-27T00:36:58,865 Created temporary directory: /tmp/pip-build-tracker-c1t94aqq 2023-09-27T00:36:58,866 Initialized build tracking at /tmp/pip-build-tracker-c1t94aqq 2023-09-27T00:36:58,867 Created build tracker: /tmp/pip-build-tracker-c1t94aqq 2023-09-27T00:36:58,867 Entered build tracker: /tmp/pip-build-tracker-c1t94aqq 2023-09-27T00:36:58,868 Created temporary directory: /tmp/pip-wheel-7cnwb2bw 2023-09-27T00:36:58,871 Created temporary directory: /tmp/pip-ephem-wheel-cache-q7uz4fpb 2023-09-27T00:36:58,895 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-27T00:36:58,899 2 location(s) to search for versions of seldompy: 2023-09-27T00:36:58,899 * https://pypi.org/simple/seldompy/ 2023-09-27T00:36:58,899 * https://www.piwheels.org/simple/seldompy/ 2023-09-27T00:36:58,900 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-09-27T00:36:58,901 Getting page https://pypi.org/simple/seldompy/ 2023-09-27T00:36:58,902 Found index url https://pypi.org/simple/ 2023-09-27T00:36:59,163 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-09-27T00:36:59,165 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T00:36:59,166 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-09-27T00:36:59,166 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T00:36:59,167 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2023-09-27T00:36:59,167 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T00:36:59,168 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2023-09-27T00:36:59,169 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-09-27T00:36:59,169 Getting page https://www.piwheels.org/simple/seldompy/ 2023-09-27T00:36:59,171 Found index url https://www.piwheels.org/simple/ 2023-09-27T00:36:59,326 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-09-27T00:36:59,327 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-09-27T00:36:59,328 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-09-27T00:36:59,346 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-09-27T00:36:59,365 Collecting seldompy==0.9.9 2023-09-27T00:36:59,367 Created temporary directory: /tmp/pip-unpack-f7jflvtj 2023-09-27T00:36:59,502 Downloading SELDOMpy-0.9.9.tar.gz (260 kB) 2023-09-27T00:36:59,826 Added seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz to build tracker '/tmp/pip-build-tracker-c1t94aqq' 2023-09-27T00:36:59,827 Running setup.py (path:/tmp/pip-wheel-7cnwb2bw/seldompy_8fb38a82c1914f98b1b2349cab65d728/setup.py) egg_info for package seldompy 2023-09-27T00:36:59,828 Created temporary directory: /tmp/pip-pip-egg-info-8kj59avr 2023-09-27T00:36:59,829 Preparing metadata (setup.py): started 2023-09-27T00:36:59,830 Running command python setup.py egg_info 2023-09-27T00:37:00,548 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:00,549 !! 2023-09-27T00:37:00,550 ******************************************************************************** 2023-09-27T00:37:00,550 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:00,550 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:00,551 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:00,552 calls to avoid build errors in the future. 2023-09-27T00:37:00,553 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:00,553 ******************************************************************************** 2023-09-27T00:37:00,554 !! 2023-09-27T00:37:00,555 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:01,053 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:01,053 !! 2023-09-27T00:37:01,054 ******************************************************************************** 2023-09-27T00:37:01,055 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:01,055 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:01,056 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:01,057 calls to avoid build errors in the future. 2023-09-27T00:37:01,058 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:01,058 ******************************************************************************** 2023-09-27T00:37:01,059 !! 2023-09-27T00:37:01,060 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:01,092 running egg_info 2023-09-27T00:37:01,094 creating /tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info 2023-09-27T00:37:01,119 writing /tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/PKG-INFO 2023-09-27T00:37:01,123 writing dependency_links to /tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/dependency_links.txt 2023-09-27T00:37:01,125 writing requirements to /tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/requires.txt 2023-09-27T00:37:01,126 writing top-level names to /tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/top_level.txt 2023-09-27T00:37:01,127 writing manifest file '/tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T00:37:01,227 reading manifest file '/tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T00:37:01,229 reading manifest template 'MANIFEST.in' 2023-09-27T00:37:01,236 adding license file 'LICENSE.txt' 2023-09-27T00:37:01,240 writing manifest file '/tmp/pip-pip-egg-info-8kj59avr/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T00:37:01,387 Preparing metadata (setup.py): finished with status 'done' 2023-09-27T00:37:01,392 Source in /tmp/pip-wheel-7cnwb2bw/seldompy_8fb38a82c1914f98b1b2349cab65d728 has version 0.9.9, which satisfies requirement seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz 2023-09-27T00:37:01,393 Removed seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz from build tracker '/tmp/pip-build-tracker-c1t94aqq' 2023-09-27T00:37:01,397 Created temporary directory: /tmp/pip-unpack-bcgd0e6n 2023-09-27T00:37:01,398 Created temporary directory: /tmp/pip-unpack-50f3wm5i 2023-09-27T00:37:01,409 Building wheels for collected packages: seldompy 2023-09-27T00:37:01,413 Created temporary directory: /tmp/pip-wheel-5l48nlti 2023-09-27T00:37:01,414 Building wheel for seldompy (setup.py): started 2023-09-27T00:37:01,415 Destination directory: /tmp/pip-wheel-5l48nlti 2023-09-27T00:37:01,416 Running command python setup.py bdist_wheel 2023-09-27T00:37:02,111 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:02,111 !! 2023-09-27T00:37:02,112 ******************************************************************************** 2023-09-27T00:37:02,112 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:02,113 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:02,114 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:02,114 calls to avoid build errors in the future. 2023-09-27T00:37:02,115 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:02,115 ******************************************************************************** 2023-09-27T00:37:02,116 !! 2023-09-27T00:37:02,117 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:02,616 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:02,616 !! 2023-09-27T00:37:02,617 ******************************************************************************** 2023-09-27T00:37:02,618 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:02,618 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:02,619 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:02,619 calls to avoid build errors in the future. 2023-09-27T00:37:02,621 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:02,621 ******************************************************************************** 2023-09-27T00:37:02,622 !! 2023-09-27T00:37:02,623 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:02,653 running bdist_wheel 2023-09-27T00:37:02,776 running build 2023-09-27T00:37:02,777 running build_py 2023-09-27T00:37:02,823 creating build 2023-09-27T00:37:02,826 creating build/lib.linux-armv7l-cpython-311 2023-09-27T00:37:02,831 creating build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T00:37:02,837 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T00:37:02,847 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:02,851 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:02,858 running egg_info 2023-09-27T00:37:02,982 writing SELDOMpy.egg-info/PKG-INFO 2023-09-27T00:37:03,191 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-09-27T00:37:03,193 writing requirements to SELDOMpy.egg-info/requires.txt 2023-09-27T00:37:03,194 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-09-27T00:37:03,226 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T00:37:03,234 reading manifest template 'MANIFEST.in' 2023-09-27T00:37:03,242 adding license file 'LICENSE.txt' 2023-09-27T00:37:03,252 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T00:37:03,256 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-09-27T00:37:03,257 !! 2023-09-27T00:37:03,260 ******************************************************************************** 2023-09-27T00:37:03,261 ############################ 2023-09-27T00:37:03,262 # Package would be ignored # 2023-09-27T00:37:03,263 ############################ 2023-09-27T00:37:03,265 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-09-27T00:37:03,266 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,270 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,271 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-09-27T00:37:03,272 to the `packages` configuration field. 2023-09-27T00:37:03,274 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,276 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,278 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,282 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-09-27T00:37:03,284 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-09-27T00:37:03,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,288 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,291 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,299 even if it does not contain any `.py` files. 2023-09-27T00:37:03,301 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,302 directory, all directories are treated like packages. 2023-09-27T00:37:03,302 ******************************************************************************** 2023-09-27T00:37:03,304 !! 2023-09-27T00:37:03,304 check.warn(importable) 2023-09-27T00:37:03,305 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-09-27T00:37:03,306 !! 2023-09-27T00:37:03,307 ******************************************************************************** 2023-09-27T00:37:03,307 ############################ 2023-09-27T00:37:03,308 # Package would be ignored # 2023-09-27T00:37:03,309 ############################ 2023-09-27T00:37:03,310 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-09-27T00:37:03,312 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,315 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,316 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-09-27T00:37:03,318 to the `packages` configuration field. 2023-09-27T00:37:03,322 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,325 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,328 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,331 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,334 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-09-27T00:37:03,335 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-09-27T00:37:03,337 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,338 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,339 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,340 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,342 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,342 even if it does not contain any `.py` files. 2023-09-27T00:37:03,342 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,343 directory, all directories are treated like packages. 2023-09-27T00:37:03,343 ******************************************************************************** 2023-09-27T00:37:03,344 !! 2023-09-27T00:37:03,345 check.warn(importable) 2023-09-27T00:37:03,345 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-09-27T00:37:03,346 !! 2023-09-27T00:37:03,346 ******************************************************************************** 2023-09-27T00:37:03,347 ############################ 2023-09-27T00:37:03,347 # Package would be ignored # 2023-09-27T00:37:03,348 ############################ 2023-09-27T00:37:03,348 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-09-27T00:37:03,349 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,350 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,350 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-09-27T00:37:03,351 to the `packages` configuration field. 2023-09-27T00:37:03,351 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,352 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,352 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,353 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,354 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,355 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-09-27T00:37:03,356 already explicitly excluding 'SELDOMpy.functions' via 2023-09-27T00:37:03,356 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,357 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,357 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,358 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,359 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,361 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,361 even if it does not contain any `.py` files. 2023-09-27T00:37:03,362 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,362 directory, all directories are treated like packages. 2023-09-27T00:37:03,363 ******************************************************************************** 2023-09-27T00:37:03,364 !! 2023-09-27T00:37:03,364 check.warn(importable) 2023-09-27T00:37:03,365 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-09-27T00:37:03,365 !! 2023-09-27T00:37:03,367 ******************************************************************************** 2023-09-27T00:37:03,367 ############################ 2023-09-27T00:37:03,368 # Package would be ignored # 2023-09-27T00:37:03,368 ############################ 2023-09-27T00:37:03,369 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-09-27T00:37:03,369 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,370 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,371 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-09-27T00:37:03,371 to the `packages` configuration field. 2023-09-27T00:37:03,372 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,373 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,373 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,374 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,375 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,376 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-09-27T00:37:03,377 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-09-27T00:37:03,377 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,378 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,379 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,380 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,383 even if it does not contain any `.py` files. 2023-09-27T00:37:03,383 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,384 directory, all directories are treated like packages. 2023-09-27T00:37:03,384 ******************************************************************************** 2023-09-27T00:37:03,385 !! 2023-09-27T00:37:03,385 check.warn(importable) 2023-09-27T00:37:03,386 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-09-27T00:37:03,387 !! 2023-09-27T00:37:03,388 ******************************************************************************** 2023-09-27T00:37:03,388 ############################ 2023-09-27T00:37:03,389 # Package would be ignored # 2023-09-27T00:37:03,389 ############################ 2023-09-27T00:37:03,390 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-09-27T00:37:03,390 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,391 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,392 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-09-27T00:37:03,392 to the `packages` configuration field. 2023-09-27T00:37:03,394 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,395 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,396 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,398 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-09-27T00:37:03,398 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-09-27T00:37:03,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,399 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,400 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,400 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,401 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,403 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,403 even if it does not contain any `.py` files. 2023-09-27T00:37:03,404 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,404 directory, all directories are treated like packages. 2023-09-27T00:37:03,404 ******************************************************************************** 2023-09-27T00:37:03,405 !! 2023-09-27T00:37:03,406 check.warn(importable) 2023-09-27T00:37:03,406 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-09-27T00:37:03,407 !! 2023-09-27T00:37:03,407 ******************************************************************************** 2023-09-27T00:37:03,408 ############################ 2023-09-27T00:37:03,408 # Package would be ignored # 2023-09-27T00:37:03,409 ############################ 2023-09-27T00:37:03,409 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-09-27T00:37:03,410 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,411 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,411 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-09-27T00:37:03,412 to the `packages` configuration field. 2023-09-27T00:37:03,413 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,413 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,414 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,415 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,416 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,417 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-09-27T00:37:03,417 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-09-27T00:37:03,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,418 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,419 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,420 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,422 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,422 even if it does not contain any `.py` files. 2023-09-27T00:37:03,423 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,423 directory, all directories are treated like packages. 2023-09-27T00:37:03,424 ******************************************************************************** 2023-09-27T00:37:03,425 !! 2023-09-27T00:37:03,425 check.warn(importable) 2023-09-27T00:37:03,426 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-09-27T00:37:03,426 !! 2023-09-27T00:37:03,427 ******************************************************************************** 2023-09-27T00:37:03,427 ############################ 2023-09-27T00:37:03,428 # Package would be ignored # 2023-09-27T00:37:03,428 ############################ 2023-09-27T00:37:03,429 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-09-27T00:37:03,429 but it is absent from setuptools' `packages` configuration. 2023-09-27T00:37:03,430 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T00:37:03,431 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-09-27T00:37:03,431 to the `packages` configuration field. 2023-09-27T00:37:03,432 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T00:37:03,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T00:37:03,433 instead of `find_packages(...)`/`find:`). 2023-09-27T00:37:03,434 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T00:37:03,435 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T00:37:03,436 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-09-27T00:37:03,436 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-09-27T00:37:03,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T00:37:03,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T00:37:03,438 combination with a more fine grained `package-data` configuration. 2023-09-27T00:37:03,438 You can read more about "package data files" on setuptools documentation page: 2023-09-27T00:37:03,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T00:37:03,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T00:37:03,441 even if it does not contain any `.py` files. 2023-09-27T00:37:03,442 On the other hand, currently there is no concept of package data 2023-09-27T00:37:03,443 directory, all directories are treated like packages. 2023-09-27T00:37:03,443 ******************************************************************************** 2023-09-27T00:37:03,444 !! 2023-09-27T00:37:03,445 check.warn(importable) 2023-09-27T00:37:03,445 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples 2023-09-27T00:37:03,446 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T00:37:03,446 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T00:37:03,447 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T00:37:03,447 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T00:37:03,448 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T00:37:03,448 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T00:37:03,449 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T00:37:03,449 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T00:37:03,450 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,450 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,451 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,451 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,452 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,452 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,452 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,453 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,454 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,454 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,454 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T00:37:03,455 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,455 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,456 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,456 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,457 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,457 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,457 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,458 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,459 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,459 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,460 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,460 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,461 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,461 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,462 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,462 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,463 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,464 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,464 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,465 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,465 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,466 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,466 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,467 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,468 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,468 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,469 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,469 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,469 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,470 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,470 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,471 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,472 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,472 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,473 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,473 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,475 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,477 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,479 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,480 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,482 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,485 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,487 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,489 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,491 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,493 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,495 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,497 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,499 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,502 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,504 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,507 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,509 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,512 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,514 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,519 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,522 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,524 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:03,527 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include 2023-09-27T00:37:03,528 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,528 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,530 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,532 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,535 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,536 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,538 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,540 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,542 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T00:37:03,544 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes 2023-09-27T00:37:03,544 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,545 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,549 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,551 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,553 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,556 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,558 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,560 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,563 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,565 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,567 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,569 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,572 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T00:37:03,574 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-27T00:37:03,575 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-27T00:37:03,578 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,579 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,581 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,583 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,585 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,588 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,590 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,592 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,594 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,597 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,599 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,601 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,604 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,607 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T00:37:03,610 running build_ext 2023-09-27T00:37:04,146 building 'hello' extension 2023-09-27T00:37:04,147 creating build/temp.linux-armv7l-cpython-311 2023-09-27T00:37:04,148 creating build/temp.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T00:37:04,149 creating build/temp.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T00:37:04,151 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model.o 2023-09-27T00:37:04,307 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-09-27T00:37:04,308 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-27T00:37:04,309 225 | }; 2023-09-27T00:37:04,309 | ^ 2023-09-27T00:37:04,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model_stats.o 2023-09-27T00:37:04,834 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-09-27T00:37:04,835 1 | #pragma once 2023-09-27T00:37:04,835 | ^~~~ 2023-09-27T00:37:04,901 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_problem.o 2023-09-27T00:37:05,047 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-09-27T00:37:05,047 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-27T00:37:05,048 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-27T00:37:05,049 | 2023-09-27T00:37:05,049 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-27T00:37:05,050 134 | #pragma omp for schedule(dynamic,1) private(i) 2023-09-27T00:37:05,050 | 2023-09-27T00:37:05,051 SELDOMpy/src/AMIGO_problem.c:127:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-27T00:37:05,051 127 | int counter=0; 2023-09-27T00:37:05,052 | ^~~~~~~ 2023-09-27T00:37:05,052 SELDOMpy/src/AMIGO_problem.c:126:22: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-27T00:37:05,054 126 | int i, j, k, n_exps, n_times, n_obs; 2023-09-27T00:37:05,054 | ^~~~~~ 2023-09-27T00:37:05,055 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-09-27T00:37:05,055 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-27T00:37:05,056 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-27T00:37:05,056 | 2023-09-27T00:37:05,057 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-27T00:37:05,058 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2023-09-27T00:37:05,059 | 2023-09-27T00:37:05,059 SELDOMpy/src/AMIGO_problem.c:182:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-27T00:37:05,060 182 | int counter=0; 2023-09-27T00:37:05,061 | ^~~~~~~ 2023-09-27T00:37:05,062 SELDOMpy/src/AMIGO_problem.c:181:53: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-27T00:37:05,062 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-27T00:37:05,063 | ^~~~ 2023-09-27T00:37:05,064 SELDOMpy/src/AMIGO_problem.c:181:30: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-27T00:37:05,064 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-27T00:37:05,065 | ^~~~~~ 2023-09-27T00:37:05,460 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/anODEModel.o 2023-09-27T00:37:05,597 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-09-27T00:37:05,598 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-09-27T00:37:05,600 23 | int countBin=0; 2023-09-27T00:37:05,600 | ^~~~~~~~ 2023-09-27T00:37:05,601 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-09-27T00:37:05,602 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-09-27T00:37:05,603 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-09-27T00:37:05,603 | ^~~~~~~~~~~ 2023-09-27T00:37:05,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea.o 2023-09-27T00:37:05,909 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-09-27T00:37:05,911 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-09-27T00:37:05,912 2461 | int is, retval; 2023-09-27T00:37:05,912 | ^~~~~~ 2023-09-27T00:37:05,925 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-09-27T00:37:05,928 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-27T00:37:05,928 2957 | int flag, retval; 2023-09-27T00:37:05,929 | ^~~~ 2023-09-27T00:37:06,459 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-09-27T00:37:06,461 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T00:37:06,462 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-27T00:37:06,462 | ^~~~ 2023-09-27T00:37:06,464 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T00:37:06,465 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-27T00:37:06,465 | ^~~ 2023-09-27T00:37:07,846 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-09-27T00:37:07,847 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T00:37:07,848 1263 | int sign, flag; 2023-09-27T00:37:07,848 | ^~~~ 2023-09-27T00:37:08,235 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea_io.o 2023-09-27T00:37:08,747 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodes.o 2023-09-27T00:37:08,942 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-09-27T00:37:08,945 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-09-27T00:37:08,946 4328 | if (count1 <= 2) 2023-09-27T00:37:08,946 | ^~ 2023-09-27T00:37:08,949 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-09-27T00:37:08,950 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-09-27T00:37:08,950 | ^~ 2023-09-27T00:37:09,259 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-09-27T00:37:09,266 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-09-27T00:37:09,267 8850 | realtype Deltap, rDeltap; 2023-09-27T00:37:09,268 | ^~~~~~~ 2023-09-27T00:37:09,268 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-09-27T00:37:09,275 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-09-27T00:37:09,276 8961 | fprintf(stderr, msg); 2023-09-27T00:37:09,277 | ^~~ 2023-09-27T00:37:16,050 cc1: some warnings being treated as errors 2023-09-27T00:37:16,061 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-27T00:37:16,234 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-27T00:37:16,247 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-27T00:37:16,247 exec(compile('"'"''"'"''"'"' 2023-09-27T00:37:16,247 # This is -- a caller that pip uses to run setup.py 2023-09-27T00:37:16,247 # 2023-09-27T00:37:16,247 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-27T00:37:16,247 # import from `distutils.core` to work with newer packaging standards. 2023-09-27T00:37:16,247 # - It provides a clear error message when setuptools is not installed. 2023-09-27T00:37:16,247 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-27T00:37:16,247 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-27T00:37:16,247 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-27T00:37:16,247 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-27T00:37:16,247 import os, sys, tokenize 2023-09-27T00:37:16,247 2023-09-27T00:37:16,247 try: 2023-09-27T00:37:16,247 import setuptools 2023-09-27T00:37:16,247 except ImportError as error: 2023-09-27T00:37:16,247 print( 2023-09-27T00:37:16,247 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-27T00:37:16,247 "the build environment.", 2023-09-27T00:37:16,247 file=sys.stderr, 2023-09-27T00:37:16,247 ) 2023-09-27T00:37:16,247 sys.exit(1) 2023-09-27T00:37:16,247 2023-09-27T00:37:16,247 __file__ = %r 2023-09-27T00:37:16,247 sys.argv[0] = __file__ 2023-09-27T00:37:16,247 2023-09-27T00:37:16,247 if os.path.exists(__file__): 2023-09-27T00:37:16,247 filename = __file__ 2023-09-27T00:37:16,247 with tokenize.open(__file__) as f: 2023-09-27T00:37:16,247 setup_py_code = f.read() 2023-09-27T00:37:16,247 else: 2023-09-27T00:37:16,247 filename = "" 2023-09-27T00:37:16,247 setup_py_code = "from setuptools import setup; setup()" 2023-09-27T00:37:16,247 2023-09-27T00:37:16,247 exec(compile(setup_py_code, filename, "exec")) 2023-09-27T00:37:16,247 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-7cnwb2bw/seldompy_8fb38a82c1914f98b1b2349cab65d728/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-5l48nlti[/] 2023-09-27T00:37:16,247 [bold magenta]cwd[/]: /tmp/pip-wheel-7cnwb2bw/seldompy_8fb38a82c1914f98b1b2349cab65d728/ 2023-09-27T00:37:16,248 Building wheel for seldompy (setup.py): finished with status 'error' 2023-09-27T00:37:16,249 ERROR: Failed building wheel for seldompy 2023-09-27T00:37:16,251 Running setup.py clean for seldompy 2023-09-27T00:37:16,252 Running command python setup.py clean 2023-09-27T00:37:16,936 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:16,936 !! 2023-09-27T00:37:16,937 ******************************************************************************** 2023-09-27T00:37:16,938 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:16,938 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:16,939 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:16,940 calls to avoid build errors in the future. 2023-09-27T00:37:16,941 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:16,942 ******************************************************************************** 2023-09-27T00:37:16,943 !! 2023-09-27T00:37:16,944 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:17,482 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T00:37:17,483 !! 2023-09-27T00:37:17,483 ******************************************************************************** 2023-09-27T00:37:17,484 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T00:37:17,484 versions. Please use the underscore name 'description_file' instead. 2023-09-27T00:37:17,485 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T00:37:17,486 calls to avoid build errors in the future. 2023-09-27T00:37:17,486 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T00:37:17,487 ******************************************************************************** 2023-09-27T00:37:17,488 !! 2023-09-27T00:37:17,488 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T00:37:17,516 running clean 2023-09-27T00:37:17,563 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-27T00:37:17,585 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-27T00:37:17,851 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-27T00:37:17,851 'build/scripts-3.11' does not exist -- can't clean it 2023-09-27T00:37:17,852 removing 'build' 2023-09-27T00:37:17,992 Failed to build seldompy 2023-09-27T00:37:17,993 ERROR: Failed to build one or more wheels 2023-09-27T00:37:17,994 Exception information: 2023-09-27T00:37:17,994 Traceback (most recent call last): 2023-09-27T00:37:17,994 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-27T00:37:17,994 status = run_func(*args) 2023-09-27T00:37:17,994 ^^^^^^^^^^^^^^^ 2023-09-27T00:37:17,994 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-27T00:37:17,994 return func(self, options, args) 2023-09-27T00:37:17,994 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-27T00:37:17,994 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-27T00:37:17,994 raise CommandError("Failed to build one or more wheels") 2023-09-27T00:37:17,994 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-27T00:37:17,997 Removed build tracker: '/tmp/pip-build-tracker-c1t94aqq'