2023-09-27T05:37:35,852 Created temporary directory: /tmp/pip-build-tracker-28gu7o7j 2023-09-27T05:37:35,853 Initialized build tracking at /tmp/pip-build-tracker-28gu7o7j 2023-09-27T05:37:35,854 Created build tracker: /tmp/pip-build-tracker-28gu7o7j 2023-09-27T05:37:35,854 Entered build tracker: /tmp/pip-build-tracker-28gu7o7j 2023-09-27T05:37:35,855 Created temporary directory: /tmp/pip-wheel-5lpmwp44 2023-09-27T05:37:35,858 Created temporary directory: /tmp/pip-ephem-wheel-cache-pu6ywh07 2023-09-27T05:37:35,881 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-27T05:37:35,885 2 location(s) to search for versions of seldompy: 2023-09-27T05:37:35,885 * https://pypi.org/simple/seldompy/ 2023-09-27T05:37:35,885 * https://www.piwheels.org/simple/seldompy/ 2023-09-27T05:37:35,886 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-09-27T05:37:35,886 Getting page https://pypi.org/simple/seldompy/ 2023-09-27T05:37:35,888 Found index url https://pypi.org/simple/ 2023-09-27T05:37:36,105 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-09-27T05:37:36,404 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T05:37:36,466 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-09-27T05:37:36,513 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T05:37:36,514 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2023-09-27T05:37:36,516 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-09-27T05:37:36,517 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2023-09-27T05:37:36,518 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-09-27T05:37:36,519 Getting page https://www.piwheels.org/simple/seldompy/ 2023-09-27T05:37:36,522 Found index url https://www.piwheels.org/simple/ 2023-09-27T05:37:36,713 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-09-27T05:37:36,715 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-09-27T05:37:36,715 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-09-27T05:37:36,734 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-09-27T05:37:36,752 Collecting seldompy==1.0 2023-09-27T05:37:36,755 Created temporary directory: /tmp/pip-unpack-ceqg4n9g 2023-09-27T05:37:36,892 Downloading SELDOMpy-1.0.tar.gz (260 kB) 2023-09-27T05:37:37,349 Added seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-28gu7o7j' 2023-09-27T05:37:37,351 Running setup.py (path:/tmp/pip-wheel-5lpmwp44/seldompy_bdd17a5e17014bb1b07c3e28a3fe2f05/setup.py) egg_info for package seldompy 2023-09-27T05:37:37,352 Created temporary directory: /tmp/pip-pip-egg-info-yiq35fcu 2023-09-27T05:37:37,354 Preparing metadata (setup.py): started 2023-09-27T05:37:37,356 Running command python setup.py egg_info 2023-09-27T05:37:38,102 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:38,102 !! 2023-09-27T05:37:38,104 ******************************************************************************** 2023-09-27T05:37:38,104 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:38,105 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:38,106 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:38,107 calls to avoid build errors in the future. 2023-09-27T05:37:38,107 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:38,108 ******************************************************************************** 2023-09-27T05:37:38,109 !! 2023-09-27T05:37:38,110 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:38,907 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:38,907 !! 2023-09-27T05:37:38,909 ******************************************************************************** 2023-09-27T05:37:38,910 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:38,911 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:38,917 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:38,918 calls to avoid build errors in the future. 2023-09-27T05:37:38,919 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:38,920 ******************************************************************************** 2023-09-27T05:37:38,921 !! 2023-09-27T05:37:38,924 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:39,187 running egg_info 2023-09-27T05:37:39,245 creating /tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info 2023-09-27T05:37:41,437 writing /tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/PKG-INFO 2023-09-27T05:37:41,452 writing dependency_links to /tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/dependency_links.txt 2023-09-27T05:37:41,460 writing requirements to /tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/requires.txt 2023-09-27T05:37:41,464 writing top-level names to /tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/top_level.txt 2023-09-27T05:37:41,471 writing manifest file '/tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T05:37:41,659 reading manifest file '/tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T05:37:41,661 reading manifest template 'MANIFEST.in' 2023-09-27T05:37:41,670 adding license file 'LICENSE.txt' 2023-09-27T05:37:41,675 writing manifest file '/tmp/pip-pip-egg-info-yiq35fcu/SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T05:37:41,816 Preparing metadata (setup.py): finished with status 'done' 2023-09-27T05:37:41,821 Source in /tmp/pip-wheel-5lpmwp44/seldompy_bdd17a5e17014bb1b07c3e28a3fe2f05 has version 1.0, which satisfies requirement seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz 2023-09-27T05:37:41,822 Removed seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-28gu7o7j' 2023-09-27T05:37:41,827 Created temporary directory: /tmp/pip-unpack-u8niub0t 2023-09-27T05:37:41,828 Created temporary directory: /tmp/pip-unpack-iq4_6675 2023-09-27T05:37:41,839 Building wheels for collected packages: seldompy 2023-09-27T05:37:41,843 Created temporary directory: /tmp/pip-wheel-ybxy32id 2023-09-27T05:37:41,844 Building wheel for seldompy (setup.py): started 2023-09-27T05:37:41,845 Destination directory: /tmp/pip-wheel-ybxy32id 2023-09-27T05:37:41,846 Running command python setup.py bdist_wheel 2023-09-27T05:37:42,525 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:42,525 !! 2023-09-27T05:37:42,526 ******************************************************************************** 2023-09-27T05:37:42,526 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:42,527 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:42,528 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:42,528 calls to avoid build errors in the future. 2023-09-27T05:37:42,529 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:42,530 ******************************************************************************** 2023-09-27T05:37:42,531 !! 2023-09-27T05:37:42,531 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:43,026 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:43,026 !! 2023-09-27T05:37:43,027 ******************************************************************************** 2023-09-27T05:37:43,028 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:43,028 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:43,029 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:43,030 calls to avoid build errors in the future. 2023-09-27T05:37:43,031 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:43,032 ******************************************************************************** 2023-09-27T05:37:43,033 !! 2023-09-27T05:37:43,033 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:43,057 running bdist_wheel 2023-09-27T05:37:43,149 running build 2023-09-27T05:37:43,150 running build_py 2023-09-27T05:37:43,177 creating build 2023-09-27T05:37:43,178 creating build/lib.linux-armv7l-cpython-311 2023-09-27T05:37:43,178 creating build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T05:37:43,180 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T05:37:43,183 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,184 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,185 running egg_info 2023-09-27T05:37:43,242 writing SELDOMpy.egg-info/PKG-INFO 2023-09-27T05:37:43,245 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-09-27T05:37:43,247 writing requirements to SELDOMpy.egg-info/requires.txt 2023-09-27T05:37:43,248 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-09-27T05:37:43,276 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T05:37:43,281 reading manifest template 'MANIFEST.in' 2023-09-27T05:37:43,286 adding license file 'LICENSE.txt' 2023-09-27T05:37:43,293 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-09-27T05:37:43,295 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-09-27T05:37:43,296 !! 2023-09-27T05:37:43,297 ******************************************************************************** 2023-09-27T05:37:43,298 ############################ 2023-09-27T05:37:43,299 # Package would be ignored # 2023-09-27T05:37:43,299 ############################ 2023-09-27T05:37:43,300 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-09-27T05:37:43,300 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,302 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,302 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-09-27T05:37:43,303 to the `packages` configuration field. 2023-09-27T05:37:43,304 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,304 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,304 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,305 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,307 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-09-27T05:37:43,307 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-09-27T05:37:43,308 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,308 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,309 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,310 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,311 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,312 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,313 even if it does not contain any `.py` files. 2023-09-27T05:37:43,313 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,314 directory, all directories are treated like packages. 2023-09-27T05:37:43,314 ******************************************************************************** 2023-09-27T05:37:43,316 !! 2023-09-27T05:37:43,316 check.warn(importable) 2023-09-27T05:37:43,317 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-09-27T05:37:43,318 !! 2023-09-27T05:37:43,319 ******************************************************************************** 2023-09-27T05:37:43,320 ############################ 2023-09-27T05:37:43,321 # Package would be ignored # 2023-09-27T05:37:43,322 ############################ 2023-09-27T05:37:43,323 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-09-27T05:37:43,324 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,327 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,328 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-09-27T05:37:43,329 to the `packages` configuration field. 2023-09-27T05:37:43,332 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,334 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,337 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,340 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,342 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-09-27T05:37:43,344 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-09-27T05:37:43,345 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,346 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,348 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,351 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,357 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,357 even if it does not contain any `.py` files. 2023-09-27T05:37:43,357 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,358 directory, all directories are treated like packages. 2023-09-27T05:37:43,359 ******************************************************************************** 2023-09-27T05:37:43,360 !! 2023-09-27T05:37:43,360 check.warn(importable) 2023-09-27T05:37:43,361 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-09-27T05:37:43,361 !! 2023-09-27T05:37:43,362 ******************************************************************************** 2023-09-27T05:37:43,363 ############################ 2023-09-27T05:37:43,363 # Package would be ignored # 2023-09-27T05:37:43,364 ############################ 2023-09-27T05:37:43,364 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-09-27T05:37:43,365 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,366 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,366 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-09-27T05:37:43,367 to the `packages` configuration field. 2023-09-27T05:37:43,368 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,369 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,370 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,371 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,372 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-09-27T05:37:43,372 already explicitly excluding 'SELDOMpy.functions' via 2023-09-27T05:37:43,373 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,374 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,375 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,376 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,377 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,378 even if it does not contain any `.py` files. 2023-09-27T05:37:43,378 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,379 directory, all directories are treated like packages. 2023-09-27T05:37:43,380 ******************************************************************************** 2023-09-27T05:37:43,381 !! 2023-09-27T05:37:43,381 check.warn(importable) 2023-09-27T05:37:43,382 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-09-27T05:37:43,383 !! 2023-09-27T05:37:43,384 ******************************************************************************** 2023-09-27T05:37:43,385 ############################ 2023-09-27T05:37:43,387 # Package would be ignored # 2023-09-27T05:37:43,387 ############################ 2023-09-27T05:37:43,387 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-09-27T05:37:43,388 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,389 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,389 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-09-27T05:37:43,390 to the `packages` configuration field. 2023-09-27T05:37:43,391 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,392 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,393 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,394 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,398 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-09-27T05:37:43,399 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-09-27T05:37:43,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,402 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,404 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,413 even if it does not contain any `.py` files. 2023-09-27T05:37:43,414 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,416 directory, all directories are treated like packages. 2023-09-27T05:37:43,418 ******************************************************************************** 2023-09-27T05:37:43,421 !! 2023-09-27T05:37:43,423 check.warn(importable) 2023-09-27T05:37:43,425 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-09-27T05:37:43,427 !! 2023-09-27T05:37:43,430 ******************************************************************************** 2023-09-27T05:37:43,430 ############################ 2023-09-27T05:37:43,431 # Package would be ignored # 2023-09-27T05:37:43,431 ############################ 2023-09-27T05:37:43,432 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-09-27T05:37:43,433 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,435 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,435 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-09-27T05:37:43,436 to the `packages` configuration field. 2023-09-27T05:37:43,437 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,438 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,440 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,441 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,443 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-09-27T05:37:43,444 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-09-27T05:37:43,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,445 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,446 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,447 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,449 even if it does not contain any `.py` files. 2023-09-27T05:37:43,450 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,450 directory, all directories are treated like packages. 2023-09-27T05:37:43,451 ******************************************************************************** 2023-09-27T05:37:43,451 !! 2023-09-27T05:37:43,452 check.warn(importable) 2023-09-27T05:37:43,452 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-09-27T05:37:43,453 !! 2023-09-27T05:37:43,454 ******************************************************************************** 2023-09-27T05:37:43,454 ############################ 2023-09-27T05:37:43,455 # Package would be ignored # 2023-09-27T05:37:43,455 ############################ 2023-09-27T05:37:43,456 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-09-27T05:37:43,456 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,458 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,458 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-09-27T05:37:43,459 to the `packages` configuration field. 2023-09-27T05:37:43,460 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,461 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,462 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,463 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,464 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-09-27T05:37:43,464 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-09-27T05:37:43,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,465 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,466 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,467 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,468 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,469 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,470 even if it does not contain any `.py` files. 2023-09-27T05:37:43,471 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,471 directory, all directories are treated like packages. 2023-09-27T05:37:43,472 ******************************************************************************** 2023-09-27T05:37:43,473 !! 2023-09-27T05:37:43,473 check.warn(importable) 2023-09-27T05:37:43,474 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-09-27T05:37:43,474 !! 2023-09-27T05:37:43,475 ******************************************************************************** 2023-09-27T05:37:43,475 ############################ 2023-09-27T05:37:43,476 # Package would be ignored # 2023-09-27T05:37:43,476 ############################ 2023-09-27T05:37:43,477 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-09-27T05:37:43,477 but it is absent from setuptools' `packages` configuration. 2023-09-27T05:37:43,478 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-27T05:37:43,479 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-09-27T05:37:43,479 to the `packages` configuration field. 2023-09-27T05:37:43,480 Alternatively, you can also rely on setuptools' discovery methods 2023-09-27T05:37:43,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-27T05:37:43,481 instead of `find_packages(...)`/`find:`). 2023-09-27T05:37:43,482 You can read more about "package discovery" on setuptools documentation page: 2023-09-27T05:37:43,483 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-27T05:37:43,484 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-09-27T05:37:43,484 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-09-27T05:37:43,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-27T05:37:43,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-27T05:37:43,486 combination with a more fine grained `package-data` configuration. 2023-09-27T05:37:43,487 You can read more about "package data files" on setuptools documentation page: 2023-09-27T05:37:43,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-27T05:37:43,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-27T05:37:43,490 even if it does not contain any `.py` files. 2023-09-27T05:37:43,490 On the other hand, currently there is no concept of package data 2023-09-27T05:37:43,491 directory, all directories are treated like packages. 2023-09-27T05:37:43,491 ******************************************************************************** 2023-09-27T05:37:43,492 !! 2023-09-27T05:37:43,493 check.warn(importable) 2023-09-27T05:37:43,493 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples 2023-09-27T05:37:43,494 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T05:37:43,494 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T05:37:43,495 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T05:37:43,495 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/MAPK 2023-09-27T05:37:43,496 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T05:37:43,496 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T05:37:43,497 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T05:37:43,497 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/examples/SP 2023-09-27T05:37:43,498 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,498 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,498 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,499 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,499 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,500 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,500 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,500 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,501 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,501 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,502 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-311/SELDOMpy/functions 2023-09-27T05:37:43,502 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,502 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,503 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,503 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,504 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,504 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,505 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,505 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,506 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,506 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,507 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,507 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,508 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,508 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,509 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,509 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,510 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,510 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,511 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,512 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,512 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,513 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,513 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,514 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,514 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,515 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,515 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,516 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,516 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,517 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,517 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,517 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,518 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,518 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,519 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,519 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,519 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,520 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,521 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,523 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,525 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,527 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,529 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,532 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,534 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,536 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,538 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,540 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,542 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,545 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,547 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,549 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,552 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,554 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,556 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,559 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,561 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,564 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:43,567 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include 2023-09-27T05:37:43,568 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,569 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,571 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,573 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,575 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,577 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,578 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,580 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,582 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_amigo 2023-09-27T05:37:43,584 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes 2023-09-27T05:37:43,585 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,586 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,589 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,591 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,594 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,597 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,599 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,601 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,604 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,606 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,608 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,610 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,614 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/cvodes 2023-09-27T05:37:43,616 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-27T05:37:43,617 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/nvector 2023-09-27T05:37:43,620 creating build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,621 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,624 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,626 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,629 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,631 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,634 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,637 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,639 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,641 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,645 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,647 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,650 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,653 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-311/SELDOMpy/src/include/include_cvodes/sundials 2023-09-27T05:37:43,656 running build_ext 2023-09-27T05:37:44,235 building 'hello' extension 2023-09-27T05:37:44,237 creating build/temp.linux-armv7l-cpython-311 2023-09-27T05:37:44,237 creating build/temp.linux-armv7l-cpython-311/SELDOMpy 2023-09-27T05:37:44,238 creating build/temp.linux-armv7l-cpython-311/SELDOMpy/src 2023-09-27T05:37:44,240 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model.o 2023-09-27T05:37:44,400 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-09-27T05:37:44,400 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-09-27T05:37:44,401 225 | }; 2023-09-27T05:37:44,402 | ^ 2023-09-27T05:37:44,889 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_model_stats.o 2023-09-27T05:37:44,930 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-09-27T05:37:44,931 1 | #pragma once 2023-09-27T05:37:44,932 | ^~~~ 2023-09-27T05:37:44,998 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/AMIGO_problem.o 2023-09-27T05:37:45,142 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-09-27T05:37:45,143 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-27T05:37:45,143 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-27T05:37:45,144 | 2023-09-27T05:37:45,145 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-27T05:37:45,145 134 | #pragma omp for schedule(dynamic,1) private(i) 2023-09-27T05:37:45,146 | 2023-09-27T05:37:45,146 SELDOMpy/src/AMIGO_problem.c:127:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-27T05:37:45,147 127 | int counter=0; 2023-09-27T05:37:45,147 | ^~~~~~~ 2023-09-27T05:37:45,148 SELDOMpy/src/AMIGO_problem.c:126:22: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-27T05:37:45,149 126 | int i, j, k, n_exps, n_times, n_obs; 2023-09-27T05:37:45,150 | ^~~~~~ 2023-09-27T05:37:45,150 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-09-27T05:37:45,151 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-09-27T05:37:45,152 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-09-27T05:37:45,153 | 2023-09-27T05:37:45,153 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-09-27T05:37:45,154 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2023-09-27T05:37:45,155 | 2023-09-27T05:37:45,156 SELDOMpy/src/AMIGO_problem.c:182:13: warning: unused variable ‘counter’ [-Wunused-variable] 2023-09-27T05:37:45,156 182 | int counter=0; 2023-09-27T05:37:45,157 | ^~~~~~~ 2023-09-27T05:37:45,158 SELDOMpy/src/AMIGO_problem.c:181:53: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-27T05:37:45,159 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-27T05:37:45,159 | ^~~~ 2023-09-27T05:37:45,160 SELDOMpy/src/AMIGO_problem.c:181:30: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-09-27T05:37:45,161 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-09-27T05:37:45,162 | ^~~~~~ 2023-09-27T05:37:45,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/anODEModel.o 2023-09-27T05:37:45,723 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-09-27T05:37:45,724 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-09-27T05:37:45,725 23 | int countBin=0; 2023-09-27T05:37:45,726 | ^~~~~~~~ 2023-09-27T05:37:45,726 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-09-27T05:37:45,727 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-09-27T05:37:45,728 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-09-27T05:37:45,729 | ^~~~~~~~~~~ 2023-09-27T05:37:45,881 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea.o 2023-09-27T05:37:46,046 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-09-27T05:37:46,049 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-09-27T05:37:46,049 2461 | int is, retval; 2023-09-27T05:37:46,050 | ^~~~~~ 2023-09-27T05:37:46,062 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-09-27T05:37:46,064 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-09-27T05:37:46,066 2957 | int flag, retval; 2023-09-27T05:37:46,066 | ^~~~ 2023-09-27T05:37:46,633 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-09-27T05:37:46,635 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T05:37:46,636 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-27T05:37:46,637 | ^~~~ 2023-09-27T05:37:46,638 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T05:37:46,638 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-09-27T05:37:46,639 | ^~~ 2023-09-27T05:37:48,029 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-09-27T05:37:48,030 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized [-Wmaybe-uninitialized] 2023-09-27T05:37:48,031 1263 | int sign, flag; 2023-09-27T05:37:48,032 | ^~~~ 2023-09-27T05:37:48,428 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodea_io.o 2023-09-27T05:37:48,935 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-311/SELDOMpy/src/cvodes.o 2023-09-27T05:37:49,135 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-09-27T05:37:49,138 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-09-27T05:37:49,139 4328 | if (count1 <= 2) 2023-09-27T05:37:49,139 | ^~ 2023-09-27T05:37:49,142 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-09-27T05:37:49,142 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-09-27T05:37:49,143 | ^~ 2023-09-27T05:37:49,451 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-09-27T05:37:49,459 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-09-27T05:37:49,459 8850 | realtype Deltap, rDeltap; 2023-09-27T05:37:49,460 | ^~~~~~~ 2023-09-27T05:37:49,461 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-09-27T05:37:49,467 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-09-27T05:37:49,468 8961 | fprintf(stderr, msg); 2023-09-27T05:37:49,469 | ^~~ 2023-09-27T05:37:56,248 cc1: some warnings being treated as errors 2023-09-27T05:37:56,260 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-27T05:37:56,432 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-27T05:37:56,445 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-27T05:37:56,445 exec(compile('"'"''"'"''"'"' 2023-09-27T05:37:56,445 # This is -- a caller that pip uses to run setup.py 2023-09-27T05:37:56,445 # 2023-09-27T05:37:56,445 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-27T05:37:56,445 # import from `distutils.core` to work with newer packaging standards. 2023-09-27T05:37:56,445 # - It provides a clear error message when setuptools is not installed. 2023-09-27T05:37:56,445 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-27T05:37:56,445 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-27T05:37:56,445 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-27T05:37:56,445 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-27T05:37:56,445 import os, sys, tokenize 2023-09-27T05:37:56,445 2023-09-27T05:37:56,445 try: 2023-09-27T05:37:56,445 import setuptools 2023-09-27T05:37:56,445 except ImportError as error: 2023-09-27T05:37:56,445 print( 2023-09-27T05:37:56,445 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-27T05:37:56,445 "the build environment.", 2023-09-27T05:37:56,445 file=sys.stderr, 2023-09-27T05:37:56,445 ) 2023-09-27T05:37:56,445 sys.exit(1) 2023-09-27T05:37:56,445 2023-09-27T05:37:56,445 __file__ = %r 2023-09-27T05:37:56,445 sys.argv[0] = __file__ 2023-09-27T05:37:56,445 2023-09-27T05:37:56,445 if os.path.exists(__file__): 2023-09-27T05:37:56,445 filename = __file__ 2023-09-27T05:37:56,445 with tokenize.open(__file__) as f: 2023-09-27T05:37:56,445 setup_py_code = f.read() 2023-09-27T05:37:56,445 else: 2023-09-27T05:37:56,445 filename = "" 2023-09-27T05:37:56,445 setup_py_code = "from setuptools import setup; setup()" 2023-09-27T05:37:56,445 2023-09-27T05:37:56,445 exec(compile(setup_py_code, filename, "exec")) 2023-09-27T05:37:56,445 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-5lpmwp44/seldompy_bdd17a5e17014bb1b07c3e28a3fe2f05/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ybxy32id[/] 2023-09-27T05:37:56,446 [bold magenta]cwd[/]: /tmp/pip-wheel-5lpmwp44/seldompy_bdd17a5e17014bb1b07c3e28a3fe2f05/ 2023-09-27T05:37:56,446 Building wheel for seldompy (setup.py): finished with status 'error' 2023-09-27T05:37:56,448 ERROR: Failed building wheel for seldompy 2023-09-27T05:37:56,449 Running setup.py clean for seldompy 2023-09-27T05:37:56,450 Running command python setup.py clean 2023-09-27T05:37:57,132 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:57,132 !! 2023-09-27T05:37:57,134 ******************************************************************************** 2023-09-27T05:37:57,134 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:57,135 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:57,136 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:57,137 calls to avoid build errors in the future. 2023-09-27T05:37:57,138 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:57,138 ******************************************************************************** 2023-09-27T05:37:57,140 !! 2023-09-27T05:37:57,140 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:57,636 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-27T05:37:57,636 !! 2023-09-27T05:37:57,637 ******************************************************************************** 2023-09-27T05:37:57,638 Usage of dash-separated 'description-file' will not be supported in future 2023-09-27T05:37:57,638 versions. Please use the underscore name 'description_file' instead. 2023-09-27T05:37:57,639 This deprecation is overdue, please update your project and remove deprecated 2023-09-27T05:37:57,639 calls to avoid build errors in the future. 2023-09-27T05:37:57,640 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-27T05:37:57,641 ******************************************************************************** 2023-09-27T05:37:57,641 !! 2023-09-27T05:37:57,642 opt = self.warn_dash_deprecation(opt, section) 2023-09-27T05:37:57,668 running clean 2023-09-27T05:37:57,713 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-27T05:37:57,717 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-27T05:37:57,750 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-27T05:37:57,751 'build/scripts-3.11' does not exist -- can't clean it 2023-09-27T05:37:57,751 removing 'build' 2023-09-27T05:37:57,891 Failed to build seldompy 2023-09-27T05:37:57,892 ERROR: Failed to build one or more wheels 2023-09-27T05:37:57,893 Exception information: 2023-09-27T05:37:57,893 Traceback (most recent call last): 2023-09-27T05:37:57,893 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-27T05:37:57,893 status = run_func(*args) 2023-09-27T05:37:57,893 ^^^^^^^^^^^^^^^ 2023-09-27T05:37:57,893 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-27T05:37:57,893 return func(self, options, args) 2023-09-27T05:37:57,893 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-27T05:37:57,893 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-27T05:37:57,893 raise CommandError("Failed to build one or more wheels") 2023-09-27T05:37:57,893 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-27T05:37:57,896 Removed build tracker: '/tmp/pip-build-tracker-28gu7o7j'