2023-09-27T05:57:58,780 Created temporary directory: /tmp/pip-build-tracker-oigygkzm
2023-09-27T05:57:58,781 Initialized build tracking at /tmp/pip-build-tracker-oigygkzm
2023-09-27T05:57:58,782 Created build tracker: /tmp/pip-build-tracker-oigygkzm
2023-09-27T05:57:58,782 Entered build tracker: /tmp/pip-build-tracker-oigygkzm
2023-09-27T05:57:58,783 Created temporary directory: /tmp/pip-wheel-6x55smw3
2023-09-27T05:57:58,786 Created temporary directory: /tmp/pip-ephem-wheel-cache-_7w719px
2023-09-27T05:57:58,807 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T05:57:58,811 2 location(s) to search for versions of mdanalysis:
2023-09-27T05:57:58,811 * https://pypi.org/simple/mdanalysis/
2023-09-27T05:57:58,811 * https://www.piwheels.org/simple/mdanalysis/
2023-09-27T05:57:58,811 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/
2023-09-27T05:57:58,812 Getting page https://pypi.org/simple/mdanalysis/
2023-09-27T05:57:58,814 Found index url https://pypi.org/simple/
2023-09-27T05:57:59,031 Fetched page https://pypi.org/simple/mdanalysis/ as application/vnd.pypi.simple.v1+json
2023-09-27T05:57:59,059   Found link https://files.pythonhosted.org/packages/97/94/fd5a74e25fba58cfb514dc39ef4717baa392057503d6c38897f886b2c0c6/MDAnalysis-0.7.6.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.7.6
2023-09-27T05:57:59,059   Found link https://files.pythonhosted.org/packages/9d/32/36e44fd1b946331bd72c7cc8806dd2b37f597a49ac7ccfe2a64ad91e59f7/MDAnalysis-0.8.0rc2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc2
2023-09-27T05:57:59,060   Found link https://files.pythonhosted.org/packages/d9/c4/27ff9dcd35aeef52f41f01a6eff0328eda8a5fa6dfa8097daa9ff70dcdf8/MDAnalysis-0.8.0rc4.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc4
2023-09-27T05:57:59,061   Found link https://files.pythonhosted.org/packages/35/04/425a87220983514ef06f87cd98f54db0a84eed5bec9dfd4b27b6799ae99e/MDAnalysis-0.8.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0
2023-09-27T05:57:59,061   Found link https://files.pythonhosted.org/packages/7d/39/0afea6f9c2cb10259479800c3b8496c59ecdab8019d5c0cf868729db4c91/MDAnalysis-0.8.1rc1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1rc1
2023-09-27T05:57:59,062   Found link https://files.pythonhosted.org/packages/9b/45/5cfc731f70af562c860d5b79329980b8b380dd8e283847c950c1f7af8d4c/MDAnalysis-0.8.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1
2023-09-27T05:57:59,063   Found link https://files.pythonhosted.org/packages/b5/f0/a3d1acd3fedafd4b56f3cc8f880acb7f7f0f1c68c46121b4c180975435bb/MDAnalysis-0.9.0-dev.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0-dev
2023-09-27T05:57:59,064   Found link https://files.pythonhosted.org/packages/3b/1a/3bd08be00e453a29b6bcbb3320bb91619539eef69ab5ddef46e4b477b34d/MDAnalysis-0.9.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0
2023-09-27T05:57:59,065   Found link https://files.pythonhosted.org/packages/e5/28/dcafeb58175edede7e4393d5ccfeafc77c3ca8eac6dd2f14d3919e9d4c0c/MDAnalysis-0.9.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.1
2023-09-27T05:57:59,066   Found link https://files.pythonhosted.org/packages/4e/59/72545bc442ee0f6a45cafbd3b0e99add0aca51cbbbe3a882cc930f993306/MDAnalysis-0.9.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.2
2023-09-27T05:57:59,066   Found link https://files.pythonhosted.org/packages/82/db/8d468530d1a4834031166fcd9fb754a13e3fd5cc65ee09970ec57c9948cb/MDAnalysis-0.10.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.10.0
2023-09-27T05:57:59,067   Found link https://files.pythonhosted.org/packages/18/80/e6a5502a43f2ce2c432e08a9b404febc46fd403fb5e4b13ddc429f676fd7/MDAnalysis-0.11.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.11.0
2023-09-27T05:57:59,068   Found link https://files.pythonhosted.org/packages/66/77/d666034a559dc75a0cc485345f3058b45b8b067a858adb009b6fae0bcefc/MDAnalysis-0.12.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.12.1
2023-09-27T05:57:59,069   Found link https://files.pythonhosted.org/packages/78/33/704a708797267b35bfe27cc40e83eedabad62c7bb143babbc728ee285082/MDAnalysis-0.13.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.13.0
2023-09-27T05:57:59,070   Found link https://files.pythonhosted.org/packages/11/4c/1b683b1448f14e73f8a45981e27689ca694d5f1106e0453145f8619ffc0c/MDAnalysis-0.14.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.14.0
2023-09-27T05:57:59,070   Found link https://files.pythonhosted.org/packages/9f/56/a4cae14e45aa893a3578905a97e17a325d663e424736366adbc134e72dce/MDAnalysis-0.15.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.15.0
2023-09-27T05:57:59,071   Found link https://files.pythonhosted.org/packages/55/bb/32c3dbd8e92b661a98839a50bd3185d29949afe4618fc1a846e42bad0ebf/MDAnalysis-0.16.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.0
2023-09-27T05:57:59,071   Found link https://files.pythonhosted.org/packages/5f/68/7e7ce717700411e25821100a3bc3d31866ef7abee7e282736f9e0635fef7/MDAnalysis-0.16.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.1
2023-09-27T05:57:59,072   Found link https://files.pythonhosted.org/packages/ae/d5/07c38db64a6bd9bcec03caea8e07137bb2e571ce2bd145f9804727dfc2a5/MDAnalysis-0.16.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.2
2023-09-27T05:57:59,073   Found link https://files.pythonhosted.org/packages/91/e0/b12ee57016dffcf8da1f5651745ab981a09bc9e51519b6fa752a1a9a6d0f/MDAnalysis-0.17.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.17.0
2023-09-27T05:57:59,073   Found link https://files.pythonhosted.org/packages/17/44/e9aff78fc88f6b8ac56b7626f3c83ed3c53f723b3f756d4c211ebd5add74/MDAnalysis-0.18.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.18.0
2023-09-27T05:57:59,074   Found link https://files.pythonhosted.org/packages/6e/30/a2b4339369e252bf22dc8d1e732870bf88c33a73e4f5e73788c1a65b25a3/MDAnalysis-0.19.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.0
2023-09-27T05:57:59,074   Found link https://files.pythonhosted.org/packages/1c/24/b03a9bf48a1703b1ec31c34585aab123ca73e7778155ac3d5301a564fde6/MDAnalysis-0.19.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.1
2023-09-27T05:57:59,075   Found link https://files.pythonhosted.org/packages/be/72/6c2f9fcd842c9a50315ac93c4079b3f70735c6125fe903d04fb68a6e616a/MDAnalysis-0.19.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.2
2023-09-27T05:57:59,076   Found link https://files.pythonhosted.org/packages/b8/49/a0470dda3837aa4c42a7d2e69a4aaa1646ce2aeffe686f6887666f265b43/MDAnalysis-0.20.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.0
2023-09-27T05:57:59,077   Found link https://files.pythonhosted.org/packages/83/4b/97c2df212f1eee47144648aa0e0da1a9022eab74d3fc1fbaf2767734de3d/MDAnalysis-0.20.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.1
2023-09-27T05:57:59,078   Found link https://files.pythonhosted.org/packages/c9/ae/11905971cc6cdb436bff040270f58fb3fc54ef77aea2ce2dfc269129f74e/MDAnalysis-1.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 1.0.0
2023-09-27T05:57:59,079   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-27T05:57:59,080   Skipping link: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-27T05:57:59,081   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,082   Skipping link: 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,083   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,084   Skipping link: 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,084   Found link https://files.pythonhosted.org/packages/55/d1/9e302a51bdf6b3d0b7045c20b42203ad8ad20bf2103e8c19db2da868c6e7/MDAnalysis-2.0.0b0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 2.0.0b0
2023-09-27T05:57:59,085   Found link https://files.pythonhosted.org/packages/bf/a2/5371b04ff9009b7c33e2e211bd622f961d30ccc47cb45b579f314572dfee/MDAnalysis-2.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.6), version: 2.0.0
2023-09-27T05:57:59,086   Found link https://files.pythonhosted.org/packages/fd/5a/ff83875f292645f916cc3df339ce45b9f23a06183da51638efb6c593d2e6/MDAnalysis-2.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.7), version: 2.1.0
2023-09-27T05:57:59,086   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/e6/70ff5c7854cde5b6506cfd017f1b8271cb58f1d23f0d2e92b2119a5a2ab8/MDAnalysis-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,087   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/dd/91/227cddc28727e6d5ba1671f46657c9affe449d4259f9e598af74d1e878ae/MDAnalysis-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,088   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1d/e7355508ddd8254f4d67cae78675b48cf1fb0d91480b1ef6f836afb8d7fa/MDAnalysis-2.2.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,089   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/d7/e97e9ddf0dbc048765a02f2d16d09f62814ff12ab26d78ca00ee5ca5e21f/MDAnalysis-2.2.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,089   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/07/a888f3fe052fb83ef68491a4f9e818bcf37e499492a206a3bd8e74f713bc/MDAnalysis-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,090   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bc/c2/e8ba8d35609854287ec30cdb80a79e8de33f1cd88fd05efd40bdb705b142/MDAnalysis-2.2.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,090   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/17/0f/c96e22c0487dc4758d6cb895c0707c12e359b9e48d5022f7316df42f8c84/MDAnalysis-2.2.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,091   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/50/d9/af23d161bc9c50678f955d802b8cb1ab624e715ed7d86e8e14f86e4b8f80/MDAnalysis-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,092   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/5c/464d58a27ce0e2b0f010b1c65d0b4149256a7c470f5076beee1928e5e9a9/MDAnalysis-2.2.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,093   Found link https://files.pythonhosted.org/packages/5b/73/a077ff42d0cd88c5d3d6320fb156811cf67b28b5ea09a3c800e31af84b9b/MDAnalysis-2.2.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.2.0
2023-09-27T05:57:59,094   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/2f/b256ebf5f841f7db75f882fcd40a4260fe5b0f58a005ec80b5b6a06d00eb/MDAnalysis-2.3.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,094   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bd/3f/a2671e82dd0cce8ba6989ab7a2ca7b41caf030c060826e51f755db342ba7/MDAnalysis-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,095   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/ee/ec90cb066842d53783b8ee5b64ff6e53516072c248e175959d0a8fc7bf22/MDAnalysis-2.3.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,095   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/34/53/4b049681653aff30fa7f071a2aef6a842efe5c1f17d5852c0650517779c9/MDAnalysis-2.3.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,096   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/92/13/6e132a997503ecc40413196317a6bd8698ba503a7fc0af766af94b441da7/MDAnalysis-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,096   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/87/89/cf077bb830fecea88bafb1496dce463292195e957560f50853010ff30337/MDAnalysis-2.3.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,097   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/13/f2f10cb68c696fe39700c6efc44ac3d4e3e0700dcf53e38057f4a659183b/MDAnalysis-2.3.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,098   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/df/01/07823d486611f6ab2a71b6a378554e95b4e804eb59f00f196db0f54a014d/MDAnalysis-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,099   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/12/1ca45a5c081c74219a3de9d0886a164cbcd22205f628eb7c9dd6cf2b83e8/MDAnalysis-2.3.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,099   Found link https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.3.0
2023-09-27T05:57:59,100   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/eb/37ec700b4b4ab96f9e7e2e4d6e00fc5eac5ca4a93108ae372b68a7400e36/MDAnalysis-2.4.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,101   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/21/f8/975a66519b62a477edcc5478f9e13cba80b360e274f70c74c808f52dcacb/MDAnalysis-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,102   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/6e/f8361e40f161ea078c3a0d8f14e7934c02ddb2e6bb22d6645f927ccb2b0a/MDAnalysis-2.4.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,102   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/42/61/dcfeec3752842e387baf268ba2ac21d3b7af30a2fd79cc133d34d545f84d/MDAnalysis-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,103   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7e/b8/d37658555ff36a7bb6e934d017d6892be5f244d1b978b4b3afe78b7ce70c/MDAnalysis-2.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,103   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/33/71/89f035c3610952f590e833c06e95ebc951ee8b38ec15fa3a9b16dbf03ac5/MDAnalysis-2.4.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,104   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/75/26/21dbc3d45af119b4f62a26a6da01d26974bfff38d31ce28fda1c4dafd2e1/MDAnalysis-2.4.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,104   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c0/ea/59497208df61454b914456144adad561b8a2949b62dfc7016f979661556c/MDAnalysis-2.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,105   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/14/7d169a6807b2a80430e56df3d8a365fd77472666eca2699a406229e31a30/MDAnalysis-2.4.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,106   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/96/9d/08c32ba004d58c9c9b9113cb5026ec4f4787b5cbe909b35ac7fedde50582/MDAnalysis-2.4.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,106   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/98/8d/27b01addb197cd266414763403e88bbaaf2c4f3afa457a5d0f223d2cabbc/MDAnalysis-2.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,107   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ac/19/a4a8d5000be7bcadf20b6150731d2aab5e0842e6313c7b2c7b4d121e7ca6/MDAnalysis-2.4.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,108   Found link https://files.pythonhosted.org/packages/a9/b0/67c19de6f80f4d0b2b465b3d5f94d347ce0d200d7da6ed7d9d91b712db4d/MDAnalysis-2.4.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.0
2023-09-27T05:57:59,109   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/59/cd13f05e4a4dba1a96f818ab99619cf45dd4980086a69326ef9d973073cd/MDAnalysis-2.4.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,110   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9b/91/59b0303d555fe946144daeeb3484f8dae716ae78c4105d40647d83bda678/MDAnalysis-2.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,110   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ba/9d/5f2429ee496079a2969b9b03850ab5fd5f5be242119b088855fd49f6f6e6/MDAnalysis-2.4.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,111   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9d/ae/3ae3b51a0adb99099572052b05e6202efc2f1a02795ed8f9de5b2b0ef154/MDAnalysis-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,111   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/6e/b396db627091d47b6f224f02cb08739c8a8ef697ee9949f3d4be81cc8ddf/MDAnalysis-2.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,112   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/1e/a7dcf4f55b7dd624edaa4fa6b47d202fd3884c5b73ce13ac81fdaee0339b/MDAnalysis-2.4.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,112   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c8/e5/1f68f743a1ad1b9a09d2047cc55c6565e5c835c2a444686e8458f5dac831/MDAnalysis-2.4.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,113   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8a/3d/34bc8f592d832ec464e427ecf09c62898a128a41c3f1ae142a1d9f9f2646/MDAnalysis-2.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,113   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/3f/c3961c791f4ab6128fbde66d5829b53d8e89a67ac3d4c23850b58c267206/MDAnalysis-2.4.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,114   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3d/59/1a669cb57701c883c0b2e36742fd5d7a250a71fc24e369c57db71496481f/MDAnalysis-2.4.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,115   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/64/3f/4a0d22c2b5bad72be6c07c31c6e9e870e6b3a50142edc97962830bbe22ad/MDAnalysis-2.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,115   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/d8/e99fcc0339181b0ffe3fac620f884241bd502bb392696e2429984c3ea81d/MDAnalysis-2.4.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,116   Found link https://files.pythonhosted.org/packages/8f/c0/eba86324ca52fe66db629a4d805729ad8ac3364e3adad532c063b52b7051/MDAnalysis-2.4.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.1
2023-09-27T05:57:59,117   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/39/ae/52d836a64c4094794580daf0d2692fa95d244be6321fa17e6d45fe35f621/MDAnalysis-2.4.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,117   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/69/c7/3dfe97658982390bbf93cf97f4aabb22025d2956bcd82b410e8c1831dfac/MDAnalysis-2.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,118   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/73/74/abcb7c91e47f350db0268c2058f079c937bb2f337d73b62ca3b8dea4642e/MDAnalysis-2.4.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/34/7eedce6129f71fa38fbf9d7fe3a8f366ddee3142afb07113598bf2b66d81/MDAnalysis-2.4.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,121   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ee/40/20322a888419cc4aeaafa552c51c97c666a46e69c0d130dc5744ec04ae58/MDAnalysis-2.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,121   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/65/c72765a2a6c73b8e03e114cf7e1661c28df3049adc42e8c75838b48ca083/MDAnalysis-2.4.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/57/eb/504c7f70f9d10d54ce9227df3c71b128b7a15945c525ad1604a99e654973/MDAnalysis-2.4.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/84/1fa84dc9f427b8200444b1921eaf6739d9309203ffe8851a0c0e9236acb7/MDAnalysis-2.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/44/7f/4e2ae6b5207f9782cfff053f3939433c62ef97e624bf8a71c07411d015e9/MDAnalysis-2.4.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/9a/8e6cdd8c6da04926bbaea76877b9b17082b77db742a82074b2c6dfb85e99/MDAnalysis-2.4.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/19/cc/840974bc7109839cdef50cc049336cefb2a4acc44f68913eec5f0d4db458/MDAnalysis-2.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/37/ee29c83d622e3d55a2e2936d70cf3f3d74beaf28d5d5747385e2f9149ec8/MDAnalysis-2.4.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,126   Found link https://files.pythonhosted.org/packages/7d/6b/f0ea2ab44ed0a2448737d779e02d3ae719c186dc9e3ce4cd0d75b4026dcc/MDAnalysis-2.4.2.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.2
2023-09-27T05:57:59,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/80/b5/bd5da798ba3dc191d9c4bfe3c130db1c93b917dd85b398fb3cafabeefffe/MDAnalysis-2.4.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/e3/5c3f39b1d9eb8d583d9c1e6284283895e0cd530bf444512a462637f65918/MDAnalysis-2.4.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/23/33758010c6a4a39f1d7548da0760e89447a67a52f65ca44fe8c61739f2ec/MDAnalysis-2.4.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,129   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0a/ea/4d2009e7a20642050da1bfbb61b96153961087c71cb41f60c0d0309a0e9f/MDAnalysis-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,129   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/bf/5e26758e34fd7573d1f1437664009c4940fbe62e89b372640576b7c00edc/MDAnalysis-2.4.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/af/b3/b906d3a800e414049e88d84819ac93fb790ee3d9ef7b9561a1fec97910f4/MDAnalysis-2.4.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4c/37/fbd81452243dffbda76b234e5830cd44be85efe97d0b1839b0a7378a36d2/MDAnalysis-2.4.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/75/05c14b9784df8b7e06d270089ea9438323cd781d6897d870e13347a1d497/MDAnalysis-2.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/eb/74/ab6867e602e5fc30f21ee6fe8669f42c4f47b8b7cc0b5686cad60a2ed7be/MDAnalysis-2.4.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/be/9896583934126d2207d79c9fd1bd19918b1652fafb2d09489e7306c5cbc6/MDAnalysis-2.4.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,132   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/5c/17e47fa60624834e70c34f4625cd6105d621fc055bc59339173e71450a6e/MDAnalysis-2.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/a9/1851961fb6f7a64d837de8ecbd4548c42e4066b303ac095498169f8c64e9/MDAnalysis-2.4.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,134   Found link https://files.pythonhosted.org/packages/6b/21/c8e7b9655e7819e6e12fd45b35175a13b73262626aefa0a2d1c6766708bc/MDAnalysis-2.4.3.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.3
2023-09-27T05:57:59,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/dd/509c38c5a9bf1097c38d83833b3e31c1d567bb2eeec7aec24b774e07fdbf/MDAnalysis-2.5.0.dev0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,135   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b5/df/cbec71441c70e7e56ad669dbfca766803579251324c1588543ca3c5c60c9/MDAnalysis-2.5.0.dev0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,136   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/90/52cc55304d6cad9b26e4b4866e2f1d5b369a61f3f5f7f35628d637218d02/MDAnalysis-2.5.0.dev0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,137   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ca/a8/c17eff9a6ddc6cf00823750a64787b0b4cce4d3e638e5bbbe05cfeaef483/MDAnalysis-2.5.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,137   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e4/71/c597d18fa401a7335a4c809384468df34fafd44db206dbd575aadca22c5c/MDAnalysis-2.5.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/73/b385fbed9e3200647586572be9acd0b9ff860d6422d4679a34405a632818/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/b4/64e0f3cf5dd47884163c67dc45156878e0740c6b48c646821d259d004372/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/21/4eff28643878504f800d87898d0e0d2f2719a1e3e5aa9b8a82985c889a41/MDAnalysis-2.5.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,139   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4f/a1/af895e16f737ddec418f1b3da2a27868111eee59bef5816209531e3cae81/MDAnalysis-2.5.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,139   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f2/8b/c6f3db1e022b3716322528bcfdf3e806c56cdcf7713e9db70b75343db384/MDAnalysis-2.5.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,140   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/bc/ec355c860ef217518041358c33cf8d2905d0580daaa2946405deec5ea7f4/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,141   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5c/e6/0a150fec191ba3d421ae2ac183fc51bfddb0031fc4190e1832605158a845/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,141   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,143   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5e/35/c174ccad552dd6ddbcd907b3ed000344e4ea4da82cd960d0e20a7c221c25/MDAnalysis-2.5.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,143   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/03/7ae1477a01aa3b3b38cf87988316846fd65ba3a6572d00dfe83ea0d8f27f/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,144   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,145   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,145   Found link https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.5.0
2023-09-27T05:57:59,146   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/79/45/b10fcce619623269182392859c7d4de1df939aa6e0a58bf18e01e66e9a0b/MDAnalysis-2.6.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,146   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ce/3a/500da42d4396e3a6e05cdd8aa9fcb4f1642ffded3e3e1bc1920804eb1969/MDAnalysis-2.6.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,147   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8f/0b/a941f3e533117111e546b611aa234b6cf208dd209a0f58115b0861cd44af/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,147   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/91/f997fe2ee6f6eda73cdbc97c3dc266ab8ea661bae1136e784e01ec2187e7/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,148   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3f/51/7c5790085f4d61211b38872cce7217bdfb46fa28f7247d7e565f67521645/MDAnalysis-2.6.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,149   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ea/0f/6dc7ec68db8c42b0703fb7bb15885ac607e1f0f09f5a9c134035353629fe/MDAnalysis-2.6.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,149   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e3/58/d738cb229e6e908f37bd5b2d2cd9e947dff78b18178f971a9803c367b140/MDAnalysis-2.6.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/56/07/c51e53ba655c3996993ed048b27b2ad472098ff111e140beddfa0f87a664/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1f/662db1dc5887f1c7c0ed9022bb22c3dff8106efd74c7a589597260da3dcd/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,151   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/05/65e89dac4c27984d8c2b555e104aed258db02f8141ecea64422771c63a75/MDAnalysis-2.6.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,152   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1f/19/fe06d9d3a491eec7615d1a6b9804fd2b2f4f262a22cd1229eced619deb72/MDAnalysis-2.6.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,152   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ad/22/7fbf313b9bcb3fe390da1eaaeecb542f52a8abdd09dc94c106a8a30ac505/MDAnalysis-2.6.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,153   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4b/0e/8064c23b5cfab15a07c5669d72fb94bcf73b69ac36018073b9521760e21c/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,153   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/40/c86f37f0bc281f1002e7f800acd1747c50b1b0cfe25beaba543e3a9f0104/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,154   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a6/35/cf1c6a669eabb4e6b9c66e5f60214eef0d111c82dca16c265afd9a1f61e5/MDAnalysis-2.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,155   Found link https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.0
2023-09-27T05:57:59,155   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/d3/17/9f60da41a30036dce229edf049995eec74aa62713b0d9648ed5f9aec3bad/MDAnalysis-2.6.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,156   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b3/e3/07df8ad49734110f5fde7698259ae1e9469b54f5e5f81f7a1ce217b61a5f/MDAnalysis-2.6.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,156   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/fe/0a/bf186c0bc8332962a4e9085eafc5dd7672289453bf49c8daba95523e1e94/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,157   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/c6/c2ec55f7ef4a7fe1120ded656bdc8cbac9172c242d440d0cf4e3aac956ca/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,158   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/23/48/8f3d9538d15909542fa6db82eff31fc29da0a11978dcb92dcb49c315e2f6/MDAnalysis-2.6.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,158   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c5/03/259de57764f65bba1e380628a2db0c5b4983d7644a3a294e31bd3d346792/MDAnalysis-2.6.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,159   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c1/34/7542d1f4ff58828d33500c4b7f93948131797a8fa193e1943090ef21157e/MDAnalysis-2.6.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,159   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/c2/a7a75fa0aad84a812a79c75f043c2f866c3b976403516aebccc8bfac4df0/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,161   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bf/5d/f07ae9f2294615f400bf49bd77efa0c0a44c653b50983cdf5e560f0e6da5/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,161   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c4/09/f583d8a7cca23c493d89f85c4e82608c4ab20e47be9932c0ae508104d52d/MDAnalysis-2.6.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,161   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/72/8c70e522431b5ecefd01c6c652004836ff41310e901db9f4671604f2a59d/MDAnalysis-2.6.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,162   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/06/0b/61f82278421c83499ca33e31d59b033c9302e32f99b9bf5cb6aa9acf9e54/MDAnalysis-2.6.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,162   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f0/36/8d4a1d03188661563696e0c666a9bb3d1907c0acae4e518f495143380f8e/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,163   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a7/48/c66fa9381aa89165f6d732f71103f39bfd42f8b6bfc7c901b9973b435344/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,163   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/cd/f4/9ad2217466d523c3285bae9610041e407c8d5ad7582b2783a553a38d07d6/MDAnalysis-2.6.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,164   Found link https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.1
2023-09-27T05:57:59,165 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/
2023-09-27T05:57:59,166 Getting page https://www.piwheels.org/simple/mdanalysis/
2023-09-27T05:57:59,167 Found index url https://www.piwheels.org/simple/
2023-09-27T05:57:59,343 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html
2023-09-27T05:57:59,373   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv7l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,374   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv6l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,375   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv7l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,376   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv6l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,377   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,377   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv6l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,378   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,379   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv6l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2023-09-27T05:57:59,379   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv7l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,380   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv6l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,381   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv7l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,381   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv6l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,382   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv7l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,383   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv6l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,384   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv7l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,384   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv6l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,385   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,386   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,387   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,388   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2023-09-27T05:57:59,388   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-27T05:57:59,389   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-27T05:57:59,390   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-27T05:57:59,390   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2023-09-27T05:57:59,391   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-27T05:57:59,392   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-27T05:57:59,393   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-27T05:57:59,393   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2023-09-27T05:57:59,394   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv7l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,395   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv6l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,395   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,397   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,398   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,398   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,399   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,400   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2023-09-27T05:57:59,400   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-27T05:57:59,401   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2023-09-27T05:57:59,402   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,402   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,403   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,404   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,405   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,406   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,406   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,407   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,407   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv7l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,408   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv6l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,409   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,409   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,410   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,410   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv7l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,411   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,412   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,413   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,414   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,414   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,415   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,417   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,417   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,418   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,418   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,419   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,419   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,420   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,421   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,422   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,422   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,423   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,424   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,424   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,427   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,427   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,428   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,428   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,429   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,430   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,430   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,431   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,431   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,432   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,433   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,434   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,434   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,435   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,436   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,437   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,438   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,438   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,439   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,439   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,440   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,440   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,441   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,442   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,443   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,443   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,444   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,445   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,445   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,447   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,448   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,448   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,449   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,449   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,450   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,451   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,452   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,453   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,454   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,454   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,455   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,455   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,456   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,458   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,458   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,459   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,459   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,460   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,460   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,461   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,462   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2023-09-27T05:57:59,463 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/
2023-09-27T05:57:59,463 Skipping link: not a file: https://pypi.org/simple/mdanalysis/
2023-09-27T05:57:59,486 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates
2023-09-27T05:57:59,504 Collecting mdanalysis==2.6.1
2023-09-27T05:57:59,507   Created temporary directory: /tmp/pip-unpack-8gsvv2pj
2023-09-27T05:57:59,735   Downloading MDAnalysis-2.6.1.tar.gz (4.2 MB)
2023-09-27T05:58:01,722   Added mdanalysis==2.6.1 from https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-oigygkzm'
2023-09-27T05:58:01,744   Created temporary directory: /tmp/pip-build-env-7jk2hc4h
2023-09-27T05:58:01,748   Installing build dependencies: started
2023-09-27T05:58:01,750   Running command pip subprocess to install build dependencies
2023-09-27T05:58:02,878   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-27T05:58:03,405   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T05:58:03,406   Ignoring numpy: markers 'python_version == "3.9" and platform_python_implementation != "PyPy"' don't match your environment
2023-09-27T05:58:03,407   Ignoring numpy: markers 'python_version == "3.10" and platform_python_implementation != "PyPy"' don't match your environment
2023-09-27T05:58:03,409   Ignoring numpy: markers 'python_version >= "3.12"' don't match your environment
2023-09-27T05:58:05,107   Collecting Cython>=0.28
2023-09-27T05:58:05,117     Downloading https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-09-27T05:58:06,098        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.7/11.7 MB 11.6 MB/s eta 0:00:00
2023-09-27T05:58:06,588   Collecting packaging
2023-09-27T05:58:06,606     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-09-27T05:58:07,337     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T05:58:07,345     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T05:58:07,352     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T05:58:07,359     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T05:58:07,366     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T05:58:07,753   Collecting numpy==1.23.2
2023-09-27T05:58:08,893     Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB)
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2023-09-27T05:59:05,055   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:05,056   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:05,056   reading manifest file '/tmp/pip-modern-metadata-04z1eonk/MDAnalysis.egg-info/SOURCES.txt'
2023-09-27T05:59:05,057   reading manifest template 'MANIFEST.in'
2023-09-27T05:59:05,195   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2023-09-27T05:59:05,197   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-09-27T05:59:05,199   warning: no previously-included files matching '*.pyo' found anywhere in distribution
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2023-09-27T05:59:05,204   warning: no previously-included files matching '.git' found anywhere in distribution
2023-09-27T05:59:05,204   adding license file 'LICENSE'
2023-09-27T05:59:05,204   adding license file 'AUTHORS'
2023-09-27T05:59:05,219   writing manifest file '/tmp/pip-modern-metadata-04z1eonk/MDAnalysis.egg-info/SOURCES.txt'
2023-09-27T05:59:05,220   creating '/tmp/pip-modern-metadata-04z1eonk/MDAnalysis-2.6.1.dist-info'
2023-09-27T05:59:05,470   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-27T05:59:05,481   Source in /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c has version 2.6.1, which satisfies requirement mdanalysis==2.6.1 from https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz
2023-09-27T05:59:05,482   Removed mdanalysis==2.6.1 from https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-oigygkzm'
2023-09-27T05:59:05,500 Created temporary directory: /tmp/pip-unpack-wptpe2tf
2023-09-27T05:59:05,501 Created temporary directory: /tmp/pip-unpack-coo9_ywz
2023-09-27T05:59:05,576 Building wheels for collected packages: mdanalysis
2023-09-27T05:59:05,580   Created temporary directory: /tmp/pip-wheel-yz6en676
2023-09-27T05:59:05,581   Destination directory: /tmp/pip-wheel-yz6en676
2023-09-27T05:59:05,583   Building wheel for mdanalysis (pyproject.toml): started
2023-09-27T05:59:05,584   Running command Building wheel for mdanalysis (pyproject.toml)
2023-09-27T05:59:07,869   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2023-09-27T05:59:07,869   Will attempt to use Cython.
2023-09-27T05:59:07,970   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2023-09-27T05:59:07,971     corresp(dist, value, root_dir)
2023-09-27T05:59:08,188   running bdist_wheel
2023-09-27T05:59:08,210   running build
2023-09-27T05:59:08,211   running build_py
2023-09-27T05:59:08,216   creating build
2023-09-27T05:59:08,217   creating build/lib.linux-armv7l-cpython-311
2023-09-27T05:59:08,217   creating build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,219   copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,221   copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,222   copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,224   copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,226   copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,228   copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:08,231   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,232   copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,234   copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,237   copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,239   copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,241   copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,244   copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,246   copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2023-09-27T05:59:08,249   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,250   copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,252   copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,254   copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,256   copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,258   copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,260   copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,262   copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,264   copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,266   copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,268   copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,270   copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,273   copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,275   copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,277   copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,279   copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,282   copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,284   copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,286   copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,288   copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,291   copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,293   copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,296   copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,299   copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,301   copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,304   copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,306   copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,309   copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,311   copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,314   copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,317   copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,319   copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,321   copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,322   copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:08,325   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,326   copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,328   copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,330   copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,332   copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,334   copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,336   copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,338   copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,340   copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,343   copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2023-09-27T05:59:08,346   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,347   copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,350   copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,357   copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,361   copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,364   copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,366   copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,368   copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,372   copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,374   copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,377   copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,380   copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,382   copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,385   copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,388   copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,392   copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,394   copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,397   copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,400   copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,403   copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,405   copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,408   copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,410   copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,412   copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,414   copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T05:59:08,417   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,418   copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,420   copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,422   copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,423   copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,425   copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,428   copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,430   copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2023-09-27T05:59:08,432   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,433   copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,435   copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,438   copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,440   copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,443   copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2023-09-27T05:59:08,446   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,447   copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,450   copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,453   copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,455   copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,458   copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,460   copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,462   copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,464   copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,468   copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,471   copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,473   copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:08,477   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,478   copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,480   copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,482   copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,485   copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,486   copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,489   copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,491   copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,493   copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,495   copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,497   copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,499   copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,502   copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,504   copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,506   copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,508   copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,510   copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,512   copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,514   copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,517   copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,519   copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,520   copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,523   copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,525   copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,527   copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,530   copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,532   copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,534   copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,537   copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2023-09-27T05:59:08,539   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,540   copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,546   copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,549   copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,552   copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,555   copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,558   copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,561   copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,563   copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,565   copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2023-09-27T05:59:08,570   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-27T05:59:08,571   copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-27T05:59:08,572   copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2023-09-27T05:59:08,574   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-27T05:59:08,575   copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-27T05:59:08,578   copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-27T05:59:08,581   copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2023-09-27T05:59:08,583   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,584   copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,586   copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,588   copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,590   copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,592   copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,595   copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:08,598   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
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2023-09-27T05:59:08,601   copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-27T05:59:08,602   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
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2023-09-27T05:59:08,608   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
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2023-09-27T05:59:08,614   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
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2023-09-27T05:59:08,626   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
2023-09-27T05:59:08,627   copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
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2023-09-27T05:59:08,635   copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
2023-09-27T05:59:08,638   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:08,638   copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:08,641   copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:08,643   copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:08,645   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:08,646   copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:08,648   copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:08,650   copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:08,652   copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:08,655   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:08,655   copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:08,658   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-27T05:59:08,659   copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-27T05:59:08,661   copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-27T05:59:08,664   copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-27T05:59:08,666   copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2023-09-27T05:59:08,668   running egg_info
2023-09-27T05:59:08,673   writing MDAnalysis.egg-info/PKG-INFO
2023-09-27T05:59:08,684   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
2023-09-27T05:59:08,690   writing requirements to MDAnalysis.egg-info/requires.txt
2023-09-27T05:59:08,691   writing top-level names to MDAnalysis.egg-info/top_level.txt
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2023-09-27T05:59:08,710   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,710   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,712   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,715   dependency /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,716   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,718   dependency /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,720   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,721   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,726   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,729   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,731   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,732   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,733   dependency /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,733   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,735   dependency /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,736   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-27T05:59:08,739   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,739   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,740   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,740   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,741   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,742   dependency /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,742   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,742   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,743   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,743   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,744   dependency /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T05:59:08,744   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2023-09-27T05:59:08,745   reading manifest template 'MANIFEST.in'
2023-09-27T05:59:08,884   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2023-09-27T05:59:08,886   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2023-09-27T05:59:08,889   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2023-09-27T05:59:08,892   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2023-09-27T05:59:08,895   warning: no previously-included files matching '*~' found anywhere in distribution
2023-09-27T05:59:08,897   warning: no previously-included files matching '.git' found anywhere in distribution
2023-09-27T05:59:08,897   adding license file 'LICENSE'
2023-09-27T05:59:08,898   adding license file 'AUTHORS'
2023-09-27T05:59:08,917   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2023-09-27T05:59:08,921   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.include' is absent from the `packages` configuration.
2023-09-27T05:59:08,921   !!

2023-09-27T05:59:08,922           ********************************************************************************
2023-09-27T05:59:08,923           ############################
2023-09-27T05:59:08,923           # Package would be ignored #
2023-09-27T05:59:08,924           ############################
2023-09-27T05:59:08,924           Python recognizes 'MDAnalysis.analysis.encore.clustering.include' as an importable package[^1],
2023-09-27T05:59:08,925           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:08,926           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:08,926           package, please make sure that 'MDAnalysis.analysis.encore.clustering.include' is explicitly added
2023-09-27T05:59:08,927           to the `packages` configuration field.

2023-09-27T05:59:08,928           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:08,929           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:08,929           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:08,930           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:08,931           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:08,932           If you don't want 'MDAnalysis.analysis.encore.clustering.include' to be distributed and are
2023-09-27T05:59:08,932           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.include' via
2023-09-27T05:59:08,933           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:08,933           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:08,933           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:08,934           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:08,935           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:08,936           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:08,936                 even if it does not contain any `.py` files.
2023-09-27T05:59:08,937                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:08,937                 directory, all directories are treated like packages.
2023-09-27T05:59:08,937           ********************************************************************************

2023-09-27T05:59:08,938   !!
2023-09-27T05:59:08,939     check.warn(importable)
2023-09-27T05:59:08,939   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.src' is absent from the `packages` configuration.
2023-09-27T05:59:08,940   !!

2023-09-27T05:59:08,941           ********************************************************************************
2023-09-27T05:59:08,941           ############################
2023-09-27T05:59:08,941           # Package would be ignored #
2023-09-27T05:59:08,942           ############################
2023-09-27T05:59:08,942           Python recognizes 'MDAnalysis.analysis.encore.clustering.src' as an importable package[^1],
2023-09-27T05:59:08,943           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:08,944           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:08,944           package, please make sure that 'MDAnalysis.analysis.encore.clustering.src' is explicitly added
2023-09-27T05:59:08,946           to the `packages` configuration field.

2023-09-27T05:59:08,947           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:08,947           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:08,948           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:08,949           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:08,950           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:08,951           If you don't want 'MDAnalysis.analysis.encore.clustering.src' to be distributed and are
2023-09-27T05:59:08,952           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.src' via
2023-09-27T05:59:08,952           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:08,957           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:08,959           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:08,960           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:08,966           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:08,969           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:08,970                 even if it does not contain any `.py` files.
2023-09-27T05:59:08,970                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:08,971                 directory, all directories are treated like packages.
2023-09-27T05:59:08,971           ********************************************************************************

2023-09-27T05:59:08,972   !!
2023-09-27T05:59:08,972     check.warn(importable)
2023-09-27T05:59:08,973   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is absent from the `packages` configuration.
2023-09-27T05:59:08,973   !!

2023-09-27T05:59:08,974           ********************************************************************************
2023-09-27T05:59:08,974           ############################
2023-09-27T05:59:08,975           # Package would be ignored #
2023-09-27T05:59:08,975           ############################
2023-09-27T05:59:08,976           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.include' as an importable package[^1],
2023-09-27T05:59:08,976           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:08,977           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:08,977           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is explicitly added
2023-09-27T05:59:08,978           to the `packages` configuration field.

2023-09-27T05:59:08,979           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:08,979           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:08,980           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:08,981           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:08,982           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:08,983           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.include' to be distributed and are
2023-09-27T05:59:08,983           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.include' via
2023-09-27T05:59:08,983           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:08,984           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:08,984           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:08,985           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:08,987           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,000           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,001                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,001                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,002                 directory, all directories are treated like packages.
2023-09-27T05:59:09,002           ********************************************************************************

2023-09-27T05:59:09,003   !!
2023-09-27T05:59:09,004     check.warn(importable)
2023-09-27T05:59:09,004   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is absent from the `packages` configuration.
2023-09-27T05:59:09,005   !!

2023-09-27T05:59:09,006           ********************************************************************************
2023-09-27T05:59:09,006           ############################
2023-09-27T05:59:09,007           # Package would be ignored #
2023-09-27T05:59:09,007           ############################
2023-09-27T05:59:09,008           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.src' as an importable package[^1],
2023-09-27T05:59:09,009           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,009           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,010           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is explicitly added
2023-09-27T05:59:09,010           to the `packages` configuration field.

2023-09-27T05:59:09,011           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,012           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,012           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,013           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,014           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,015           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.src' to be distributed and are
2023-09-27T05:59:09,015           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.src' via
2023-09-27T05:59:09,016           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,016           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,017           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,018           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,019           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,021           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,021                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,022                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,023                 directory, all directories are treated like packages.
2023-09-27T05:59:09,023           ********************************************************************************

2023-09-27T05:59:09,024   !!
2023-09-27T05:59:09,025     check.warn(importable)
2023-09-27T05:59:09,025   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.include' is absent from the `packages` configuration.
2023-09-27T05:59:09,026   !!

2023-09-27T05:59:09,027           ********************************************************************************
2023-09-27T05:59:09,029           ############################
2023-09-27T05:59:09,030           # Package would be ignored #
2023-09-27T05:59:09,031           ############################
2023-09-27T05:59:09,032           Python recognizes 'MDAnalysis.lib.formats.include' as an importable package[^1],
2023-09-27T05:59:09,033           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,039           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,040           package, please make sure that 'MDAnalysis.lib.formats.include' is explicitly added
2023-09-27T05:59:09,041           to the `packages` configuration field.

2023-09-27T05:59:09,042           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,043           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,044           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,045           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,046           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,054           If you don't want 'MDAnalysis.lib.formats.include' to be distributed and are
2023-09-27T05:59:09,055           already explicitly excluding 'MDAnalysis.lib.formats.include' via
2023-09-27T05:59:09,057           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,059           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,065           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,072           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,073           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,074           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,074                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,075                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,075                 directory, all directories are treated like packages.
2023-09-27T05:59:09,075           ********************************************************************************

2023-09-27T05:59:09,076   !!
2023-09-27T05:59:09,077     check.warn(importable)
2023-09-27T05:59:09,077   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.src' is absent from the `packages` configuration.
2023-09-27T05:59:09,078   !!

2023-09-27T05:59:09,079           ********************************************************************************
2023-09-27T05:59:09,079           ############################
2023-09-27T05:59:09,080           # Package would be ignored #
2023-09-27T05:59:09,080           ############################
2023-09-27T05:59:09,081           Python recognizes 'MDAnalysis.lib.formats.src' as an importable package[^1],
2023-09-27T05:59:09,081           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,082           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,083           package, please make sure that 'MDAnalysis.lib.formats.src' is explicitly added
2023-09-27T05:59:09,083           to the `packages` configuration field.

2023-09-27T05:59:09,084           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,086           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,087           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,088           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,089           If you don't want 'MDAnalysis.lib.formats.src' to be distributed and are
2023-09-27T05:59:09,090           already explicitly excluding 'MDAnalysis.lib.formats.src' via
2023-09-27T05:59:09,091           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,091           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,092           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,093           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,094           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,095           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,096                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,096                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,097                 directory, all directories are treated like packages.
2023-09-27T05:59:09,097           ********************************************************************************

2023-09-27T05:59:09,098   !!
2023-09-27T05:59:09,099     check.warn(importable)
2023-09-27T05:59:09,099   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.include' is absent from the `packages` configuration.
2023-09-27T05:59:09,100   !!

2023-09-27T05:59:09,101           ********************************************************************************
2023-09-27T05:59:09,101           ############################
2023-09-27T05:59:09,101           # Package would be ignored #
2023-09-27T05:59:09,102           ############################
2023-09-27T05:59:09,102           Python recognizes 'MDAnalysis.lib.include' as an importable package[^1],
2023-09-27T05:59:09,103           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,104           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,104           package, please make sure that 'MDAnalysis.lib.include' is explicitly added
2023-09-27T05:59:09,104           to the `packages` configuration field.

2023-09-27T05:59:09,105           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,106           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,106           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,107           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,109           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,110           If you don't want 'MDAnalysis.lib.include' to be distributed and are
2023-09-27T05:59:09,110           already explicitly excluding 'MDAnalysis.lib.include' via
2023-09-27T05:59:09,111           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,111           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,112           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,113           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,114           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,116           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,116                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,117                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,118                 directory, all directories are treated like packages.
2023-09-27T05:59:09,118           ********************************************************************************

2023-09-27T05:59:09,119   !!
2023-09-27T05:59:09,120     check.warn(importable)
2023-09-27T05:59:09,120   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.libmdanalysis' is absent from the `packages` configuration.
2023-09-27T05:59:09,121   !!

2023-09-27T05:59:09,122           ********************************************************************************
2023-09-27T05:59:09,122           ############################
2023-09-27T05:59:09,123           # Package would be ignored #
2023-09-27T05:59:09,123           ############################
2023-09-27T05:59:09,124           Python recognizes 'MDAnalysis.lib.libmdanalysis' as an importable package[^1],
2023-09-27T05:59:09,125           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,126           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,128           package, please make sure that 'MDAnalysis.lib.libmdanalysis' is explicitly added
2023-09-27T05:59:09,133           to the `packages` configuration field.

2023-09-27T05:59:09,136           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,137           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,137           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,138           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,139           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,140           If you don't want 'MDAnalysis.lib.libmdanalysis' to be distributed and are
2023-09-27T05:59:09,141           already explicitly excluding 'MDAnalysis.lib.libmdanalysis' via
2023-09-27T05:59:09,141           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,142           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,142           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,151           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,155           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,157           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,158                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,159                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,159                 directory, all directories are treated like packages.
2023-09-27T05:59:09,160           ********************************************************************************

2023-09-27T05:59:09,162   !!
2023-09-27T05:59:09,162     check.warn(importable)
2023-09-27T05:59:09,163   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.src.transformations' is absent from the `packages` configuration.
2023-09-27T05:59:09,164   !!

2023-09-27T05:59:09,165           ********************************************************************************
2023-09-27T05:59:09,166           ############################
2023-09-27T05:59:09,166           # Package would be ignored #
2023-09-27T05:59:09,167           ############################
2023-09-27T05:59:09,168           Python recognizes 'MDAnalysis.lib.src.transformations' as an importable package[^1],
2023-09-27T05:59:09,168           but it is absent from setuptools' `packages` configuration.

2023-09-27T05:59:09,169           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T05:59:09,170           package, please make sure that 'MDAnalysis.lib.src.transformations' is explicitly added
2023-09-27T05:59:09,171           to the `packages` configuration field.

2023-09-27T05:59:09,172           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T05:59:09,173           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T05:59:09,174           instead of `find_packages(...)`/`find:`).

2023-09-27T05:59:09,176           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T05:59:09,177           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T05:59:09,179           If you don't want 'MDAnalysis.lib.src.transformations' to be distributed and are
2023-09-27T05:59:09,179           already explicitly excluding 'MDAnalysis.lib.src.transformations' via
2023-09-27T05:59:09,180           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T05:59:09,180           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T05:59:09,181           combination with a more fine grained `package-data` configuration.

2023-09-27T05:59:09,182           You can read more about "package data files" on setuptools documentation page:

2023-09-27T05:59:09,186           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T05:59:09,188           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T05:59:09,189                 even if it does not contain any `.py` files.
2023-09-27T05:59:09,189                 On the other hand, currently there is no concept of package data
2023-09-27T05:59:09,189                 directory, all directories are treated like packages.
2023-09-27T05:59:09,190           ********************************************************************************

2023-09-27T05:59:09,190   !!
2023-09-27T05:59:09,191     check.warn(importable)
2023-09-27T05:59:09,191   copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-27T05:59:09,192   copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2023-09-27T05:59:09,192   copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:09,193   copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:09,193   copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T05:59:09,198   copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,198   copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,199   copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,199   copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,200   copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,200   copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,201   copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,201   copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,202   copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,202   copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,203   copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,203   copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,204   copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,204   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2023-09-27T05:59:09,205   copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2023-09-27T05:59:09,205   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2023-09-27T05:59:09,206   copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2023-09-27T05:59:09,206   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src
2023-09-27T05:59:09,207   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-27T05:59:09,207   copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-27T05:59:09,208   copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-27T05:59:09,208   copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-27T05:59:09,209   copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:09,210   copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T05:59:09,210   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:09,211   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T05:59:09,211   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-27T05:59:09,212   copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-27T05:59:09,216   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-27T05:59:09,218   copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-27T05:59:09,218   copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:09,219   copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T05:59:09,221   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2023-09-27T05:59:09,222   copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2023-09-27T05:59:09,224   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-27T05:59:09,225   copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-27T05:59:09,228   copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,253   copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,254   copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,257   copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,285   copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,287   copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,290   copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,317   copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,319   copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,322   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,323   copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,325   copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,328   copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,331   copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,333   copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,335   copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,338   copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,340   copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2023-09-27T05:59:09,342   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,343   copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,345   copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,349   copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,352   copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,354   copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T05:59:09,368   running build_ext
2023-09-27T05:59:09,371   building 'MDAnalysis.lib.formats.libdcd' extension
2023-09-27T05:59:09,372   creating build/temp.linux-armv7l-cpython-311
2023-09-27T05:59:09,372   creating build/temp.linux-armv7l-cpython-311/MDAnalysis
2023-09-27T05:59:09,373   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib
2023-09-27T05:59:09,373   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2023-09-27T05:59:09,374   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T05:59:09,815   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T05:59:09,815                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T05:59:09,816                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T05:59:09,816                    from MDAnalysis/lib/formats/libdcd.c:1188:
2023-09-27T05:59:09,817   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T05:59:09,818      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T05:59:09,818         |  ^~~~~~~
2023-09-27T05:59:09,883   In file included from MDAnalysis/lib/formats/libdcd.c:1195:
2023-09-27T05:59:09,883   MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’:
2023-09-27T05:59:09,884   MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T05:59:09,885     562 |       if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
2023-09-27T05:59:09,885         |                     ^~
2023-09-27T05:59:09,888   MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’:
2023-09-27T05:59:09,889   MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable]
2023-09-27T05:59:09,889     698 |   struct tm *tmbuf;
2023-09-27T05:59:09,890         |              ^~~~~
2023-09-27T05:59:09,891   MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable]
2023-09-27T05:59:09,891     697 |   time_t cur_time;
2023-09-27T05:59:09,892         |          ^~~~~~~~
2023-09-27T05:59:13,296   In file included from MDAnalysis/lib/formats/include/readdcd.h:25:
2023-09-27T05:59:13,297   MDAnalysis/lib/formats/include/endianswap.h: At top level:
2023-09-27T05:59:13,298   MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2023-09-27T05:59:13,298      96 | static void swap2_aligned(void *v, long ndata) {
2023-09-27T05:59:13,299         |             ^~~~~~~~~~~~~
2023-09-27T05:59:13,299   MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2023-09-27T05:59:13,300      32 | static void swap2_unaligned(void *v, long ndata) {
2023-09-27T05:59:13,300         |             ^~~~~~~~~~~~~~~
2023-09-27T05:59:13,301   In file included from MDAnalysis/lib/formats/libdcd.c:1194:
2023-09-27T05:59:13,301   MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-09-27T05:59:13,302     453 | static int fio_write_str(fio_fd fd, const char *str) {
2023-09-27T05:59:13,302         |            ^~~~~~~~~~~~~
2023-09-27T05:59:13,303   MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-09-27T05:59:13,303     449 | static int fio_read_int32(fio_fd fd, int *i) {
2023-09-27T05:59:13,304         |            ^~~~~~~~~~~~~~
2023-09-27T06:00:12,071   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:00:12,310   building 'MDAnalysis.lib.c_distances' extension
2023-09-27T06:00:12,311   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:00:12,727   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:00:12,728                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:00:12,729                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:00:12,729                    from MDAnalysis/lib/c_distances.c:1188:
2023-09-27T06:00:12,730   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:00:12,731      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:00:12,731         |  ^~~~~~~
2023-09-27T06:01:10,612   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:01:10,798   building 'MDAnalysis.lib.c_distances_openmp' extension
2023-09-27T06:01:10,798   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:01:11,183   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:01:11,184                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:01:11,185                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:01:11,185                    from MDAnalysis/lib/c_distances_openmp.c:1199:
2023-09-27T06:01:11,186   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:01:11,186      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:01:11,187         |  ^~~~~~~
2023-09-27T06:01:27,089   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib/arm-linux-gnueabihf -lm -lgomp -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -fopenmp
2023-09-27T06:01:27,268   building 'MDAnalysis.lib.qcprot' extension
2023-09-27T06:01:27,269   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:01:27,685   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:01:27,686                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:01:27,686                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:01:27,687                    from MDAnalysis/lib/qcprot.c:1182:
2023-09-27T06:01:27,687   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:01:27,688      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:01:27,688         |  ^~~~~~~
2023-09-27T06:01:27,770   MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2023-09-27T06:01:27,775   MDAnalysis/lib/qcprot.c:5100:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:01:27,775    5100 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2023-09-27T06:01:27,776         |                                   ^
2023-09-27T06:01:27,784   MDAnalysis/lib/qcprot.c:5308:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:01:27,785    5308 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2023-09-27T06:01:27,786         |                                   ^
2023-09-27T06:01:44,470   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:01:44,586   building 'MDAnalysis.lib._transformations' extension
2023-09-27T06:01:44,586   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src
2023-09-27T06:01:44,587   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2023-09-27T06:01:44,588   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:01:44,957   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:01:44,958                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:01:44,958                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:01:44,959                    from MDAnalysis/lib/src/transformations/transformations.c:73:
2023-09-27T06:01:44,959   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:01:44,960      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:01:44,960         |  ^~~~~~~
2023-09-27T06:01:45,032   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’:
2023-09-27T06:01:45,033   MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,034    1845 |                 #pragma vector always
2023-09-27T06:01:45,034         |
2023-09-27T06:01:45,036   MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,038    1962 |                     #pragma vector always
2023-09-27T06:01:45,038         |
2023-09-27T06:01:45,039   MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,040    1986 |                     #pragma vector always
2023-09-27T06:01:45,040         |
2023-09-27T06:01:45,042   MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’:
2023-09-27T06:01:45,043   MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations]
2023-09-27T06:01:45,044    2122 |     if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) {
2023-09-27T06:01:45,045         |     ^~
2023-09-27T06:01:45,045   In file included from /usr/include/python3.11/Python.h:51,
2023-09-27T06:01:45,046                    from MDAnalysis/lib/src/transformations/transformations.c:68:
2023-09-27T06:01:45,046   /usr/include/python3.11/unicodeobject.h:177:43: note: declared here
2023-09-27T06:01:45,047     177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize(
2023-09-27T06:01:45,048         |                                           ^~~~~~~~~~~~~~~~~
2023-09-27T06:01:45,089   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’:
2023-09-27T06:01:45,090   MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,090    3427 |             #pragma vector always
2023-09-27T06:01:45,091         |
2023-09-27T06:01:45,093   MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,094    3508 |                 #pragma vector always
2023-09-27T06:01:45,094         |
2023-09-27T06:01:45,100   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’:
2023-09-27T06:01:45,101   MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,101    3610 |             #pragma vector always
2023-09-27T06:01:45,102         |
2023-09-27T06:01:45,103   MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,103    3615 |             #pragma vector always
2023-09-27T06:01:45,104         |
2023-09-27T06:01:45,107   MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,108    3679 |                 #pragma vector always
2023-09-27T06:01:45,108         |
2023-09-27T06:01:45,109   MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2023-09-27T06:01:45,109    3684 |                 #pragma vector always
2023-09-27T06:01:45,110         |
2023-09-27T06:01:45,195   MDAnalysis/lib/src/transformations/transformations.c: At top level:
2023-09-27T06:01:45,195   MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function]
2023-09-27T06:01:45,196     910 | PyConverter_DoubleVector4Copy(
2023-09-27T06:01:45,196         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:01:45,197   MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function]
2023-09-27T06:01:45,198     804 | PyConverter_DoubleArrayOrNone(
2023-09-27T06:01:45,198         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:01:45,199   MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function]
2023-09-27T06:01:45,199     774 | PyConverter_DoubleArray(
2023-09-27T06:01:45,200         | ^~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:01:51,701   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:01:51,818   building 'MDAnalysis.lib.formats.libmdaxdr' extension
2023-09-27T06:01:51,819   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2023-09-27T06:01:51,820   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:01:52,207   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:01:52,208                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:01:52,208                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:01:52,209                    from MDAnalysis/lib/formats/libmdaxdr.c:1209:
2023-09-27T06:01:52,210   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:01:52,210      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:01:52,210         |  ^~~~~~~
2023-09-27T06:01:52,246   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1215:
2023-09-27T06:01:52,247   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:01:52,247       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:01:52,248         |
2023-09-27T06:01:52,248   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1216:
2023-09-27T06:01:52,249   MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:01:52,250       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:01:52,250         |
2023-09-27T06:01:52,251   In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-27T06:01:52,251   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:01:52,252       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:01:52,252         |
2023-09-27T06:01:52,253   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1217:
2023-09-27T06:01:52,253   MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:01:52,254       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:01:52,254         |
2023-09-27T06:02:53,568   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:02:53,643   In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
2023-09-27T06:02:53,644   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:53,644       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:53,645         |
2023-09-27T06:02:53,650   In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
2023-09-27T06:02:53,650   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:53,651       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:53,651         |
2023-09-27T06:02:53,652   In file included from /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2023-09-27T06:02:53,653   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:53,653       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:53,654         |
2023-09-27T06:02:53,657   MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’:
2023-09-27T06:02:53,657   MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable]
2023-09-27T06:02:53,658      39 |   int result, framebytes, totalframebytes;
2023-09-27T06:02:53,658         |                           ^~~~~~~~~~~~~~~
2023-09-27T06:02:53,659   MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable]
2023-09-27T06:02:53,660      38 |   float time, lambda;
2023-09-27T06:02:53,660         |               ^~~~~~
2023-09-27T06:02:53,661   MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable]
2023-09-27T06:02:53,661      38 |   float time, lambda;
2023-09-27T06:02:53,662         |         ^~~~
2023-09-27T06:02:53,767   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:02:53,880   In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
2023-09-27T06:02:53,881   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:53,881       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:53,882         |
2023-09-27T06:02:53,891   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’:
2023-09-27T06:02:53,892   MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,892     501 |     while (size >= num && num_of_bits < 32)
2023-09-27T06:02:53,893         |                 ^~
2023-09-27T06:02:53,894   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’:
2023-09-27T06:02:53,894   MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,895     547 |     while (bytes[num_of_bytes] >= num)
2023-09-27T06:02:53,895         |                                ^~
2023-09-27T06:02:53,896   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’:
2023-09-27T06:02:53,896   MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,897     656 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-27T06:02:53,898         |                     ^~
2023-09-27T06:02:53,898   MDAnalysis/lib/formats/src/xdrfile.c:658:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,899     658 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-27T06:02:53,899         |                               ^
2023-09-27T06:02:53,900   MDAnalysis/lib/formats/src/xdrfile.c:666:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,901     666 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-27T06:02:53,901         |                               ^
2023-09-27T06:02:53,902   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’:
2023-09-27T06:02:53,903   MDAnalysis/lib/formats/src/xdrfile.c:706:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,903     706 |                 if (lastbits < num_of_bits)
2023-09-27T06:02:53,904         |                              ^
2023-09-27T06:02:53,904   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2023-09-27T06:02:53,905   MDAnalysis/lib/formats/src/xdrfile.c:816:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,905     816 |         if(size3>xfp->buf1size)
2023-09-27T06:02:53,906         |                 ^
2023-09-27T06:02:53,906   MDAnalysis/lib/formats/src/xdrfile.c:868:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,907     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,907         |                          ^
2023-09-27T06:02:53,908   MDAnalysis/lib/formats/src/xdrfile.c:868:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-27T06:02:53,908     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,908         |                                            ^~~
2023-09-27T06:02:53,909   MDAnalysis/lib/formats/src/xdrfile.c:794:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,910     794 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-27T06:02:53,910         |                                ^~~~~~
2023-09-27T06:02:53,911   MDAnalysis/lib/formats/src/xdrfile.c:791:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,912     791 |         int smallidx, minidx, maxidx;
2023-09-27T06:02:53,912         |                       ^~~~~~
2023-09-27T06:02:53,913   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-27T06:02:53,913   MDAnalysis/lib/formats/src/xdrfile.c:1012:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,914    1012 |         if(size3>xfp->buf1size)
2023-09-27T06:02:53,914         |                 ^
2023-09-27T06:02:53,915   MDAnalysis/lib/formats/src/xdrfile.c:1135:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,916    1135 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-27T06:02:53,916         |                         ^
2023-09-27T06:02:53,917   MDAnalysis/lib/formats/src/xdrfile.c:1141:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,917    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,918         |                          ^
2023-09-27T06:02:53,918   MDAnalysis/lib/formats/src/xdrfile.c:1141:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-27T06:02:53,919    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,920         |                                            ^~~
2023-09-27T06:02:53,921   MDAnalysis/lib/formats/src/xdrfile.c:1273:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,922    1273 |         if(tmp==(unsigned int)buf2[0])
2023-09-27T06:02:53,922         |               ^~
2023-09-27T06:02:53,923   MDAnalysis/lib/formats/src/xdrfile.c:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,924    1001 |         int errval=1;
2023-09-27T06:02:53,924         |             ^~~~~~
2023-09-27T06:02:53,925   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2023-09-27T06:02:53,925   MDAnalysis/lib/formats/src/xdrfile.c:1313:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,926    1313 |         if(size3>xfp->buf1size)
2023-09-27T06:02:53,926         |                 ^
2023-09-27T06:02:53,928   MDAnalysis/lib/formats/src/xdrfile.c:1368:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,928    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,929         |                          ^
2023-09-27T06:02:53,929   MDAnalysis/lib/formats/src/xdrfile.c:1368:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-27T06:02:53,930    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,930         |                                            ^~~
2023-09-27T06:02:53,933   MDAnalysis/lib/formats/src/xdrfile.c:1290:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,934    1290 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-27T06:02:53,934         |                                ^~~~~~
2023-09-27T06:02:53,935   MDAnalysis/lib/formats/src/xdrfile.c:1287:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,935    1287 |         int smallidx, minidx, maxidx;
2023-09-27T06:02:53,936         |                       ^~~~~~
2023-09-27T06:02:53,936   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-27T06:02:53,937   MDAnalysis/lib/formats/src/xdrfile.c:1504:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,938    1504 |         if(size3>xfp->buf1size) {
2023-09-27T06:02:53,939         |                 ^
2023-09-27T06:02:53,945   MDAnalysis/lib/formats/src/xdrfile.c:1619:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,946    1619 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-27T06:02:53,946         |                         ^
2023-09-27T06:02:53,947   MDAnalysis/lib/formats/src/xdrfile.c:1624:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T06:02:53,947    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,948         |                          ^
2023-09-27T06:02:53,948   MDAnalysis/lib/formats/src/xdrfile.c:1624:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2023-09-27T06:02:53,949    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T06:02:53,950         |                                            ^~~
2023-09-27T06:02:53,954   MDAnalysis/lib/formats/src/xdrfile.c:1734:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T06:02:53,954    1734 |         if(tmp==(unsigned int)buf2[0])
2023-09-27T06:02:53,955         |               ^~
2023-09-27T06:02:53,956   MDAnalysis/lib/formats/src/xdrfile.c:1494:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-27T06:02:53,956    1494 |         int errval=1;
2023-09-27T06:02:53,957         |             ^~~~~~
2023-09-27T06:02:53,972   MDAnalysis/lib/formats/src/xdrfile.c: At top level:
2023-09-27T06:02:53,974   MDAnalysis/lib/formats/src/xdrfile.c:2535:17: warning: initialization of ‘unsigned int (*)(XDR *)’ from incompatible pointer type ‘int64_t (*)(XDR *)’ {aka ‘long long int (*)(XDR *)’} [-Wincompatible-pointer-types]
2023-09-27T06:02:53,974    2535 |                 xdrstdio_getpos,                /* get offset in the stream */
2023-09-27T06:02:53,975         |                 ^~~~~~~~~~~~~~~
2023-09-27T06:02:53,975   MDAnalysis/lib/formats/src/xdrfile.c:2535:17: note: (near initialization for ‘xdrstdio_ops.x_getpostn’)
2023-09-27T06:02:53,976   MDAnalysis/lib/formats/src/xdrfile.c:2536:17: warning: initialization of ‘int (*)(XDR *, unsigned int)’ from incompatible pointer type ‘int (*)(XDR *, int64_t,  int)’ {aka ‘int (*)(XDR *, long long int,  int)’} [-Wincompatible-pointer-types]
2023-09-27T06:02:53,977    2536 |                 xdrstdio_setpos,                /* set offset in the stream */
2023-09-27T06:02:53,977         |                 ^~~~~~~~~~~~~~~
2023-09-27T06:02:53,978   MDAnalysis/lib/formats/src/xdrfile.c:2536:17: note: (near initialization for ‘xdrstdio_ops.x_setpostn’)
2023-09-27T06:02:56,407   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2023-09-27T06:02:56,408   MDAnalysis/lib/formats/src/xdrfile.c:1157:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:56,408    1157 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2023-09-27T06:02:56,409         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:56,409   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[2]’ was declared here
2023-09-27T06:02:56,410     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:56,410         |                                       ^~~~~~~~~
2023-09-27T06:02:56,411   MDAnalysis/lib/formats/src/xdrfile.c:1156:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:56,411    1156 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2023-09-27T06:02:56,411         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:56,412   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[1]’ was declared here
2023-09-27T06:02:56,412     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:56,413         |                                       ^~~~~~~~~
2023-09-27T06:02:56,414   MDAnalysis/lib/formats/src/xdrfile.c:1155:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:56,414    1155 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2023-09-27T06:02:56,415         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:56,415   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[0]’ was declared here
2023-09-27T06:02:56,416     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:56,417         |                                       ^~~~~~~~~
2023-09-27T06:02:57,383   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2023-09-27T06:02:57,384   MDAnalysis/lib/formats/src/xdrfile.c:1639:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:57,384    1639 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2023-09-27T06:02:57,385         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:57,386   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[2]’ was declared here
2023-09-27T06:02:57,386    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:57,387         |                                       ^~~~~~~~~
2023-09-27T06:02:57,387   MDAnalysis/lib/formats/src/xdrfile.c:1638:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:57,388    1638 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2023-09-27T06:02:57,388         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:57,389   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[1]’ was declared here
2023-09-27T06:02:57,389    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:57,390         |                                       ^~~~~~~~~
2023-09-27T06:02:57,390   MDAnalysis/lib/formats/src/xdrfile.c:1637:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-27T06:02:57,391    1637 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2023-09-27T06:02:57,391         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-27T06:02:57,392   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[0]’ was declared here
2023-09-27T06:02:57,392    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2023-09-27T06:02:57,393         |                                       ^~~~~~~~~
2023-09-27T06:02:58,595   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:02:58,666   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
2023-09-27T06:02:58,666   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:58,667       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:58,668         |
2023-09-27T06:02:58,672   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2023-09-27T06:02:58,672   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:58,673       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:58,673         |
2023-09-27T06:02:58,674   In file included from /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2023-09-27T06:02:58,675   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:02:58,675       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:02:58,676         |
2023-09-27T06:02:58,677   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’:
2023-09-27T06:02:58,678   MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-27T06:02:58,679      78 |     if (slen != strlen(version) + 1)
2023-09-27T06:02:58,679         |              ^~
2023-09-27T06:02:58,680   MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-27T06:02:58,680      86 |     if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
2023-09-27T06:02:58,681         |                                           ^~
2023-09-27T06:02:58,701   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’:
2023-09-27T06:02:58,702   MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized [-Wuninitialized]
2023-09-27T06:02:58,702     408 |   return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder);
2023-09-27T06:02:58,703         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:02:58,704   MDAnalysis/lib/formats/src/xdrfile_trr.c:407:8: note: ‘plcholder’ was declared here
2023-09-27T06:02:58,704     407 |   int *plcholder;
2023-09-27T06:02:58,704         |        ^~~~~~~~~
2023-09-27T06:02:59,928   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:03:00,200   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
2023-09-27T06:03:00,201   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,201       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,202         |
2023-09-27T06:03:00,213   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2023-09-27T06:03:00,214   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,215       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,215         |
2023-09-27T06:03:00,216   In file included from /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-27T06:03:00,216   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,217       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,217         |
2023-09-27T06:03:00,340   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:03:00,381   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
2023-09-27T06:03:00,382   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,382       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,383         |
2023-09-27T06:03:00,395   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2023-09-27T06:03:00,395   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,396       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,397         |
2023-09-27T06:03:00,397   In file included from /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2023-09-27T06:03:00,398   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2023-09-27T06:03:00,398       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2023-09-27T06:03:00,399         |
2023-09-27T06:03:00,559   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:03:00,775   building 'MDAnalysis.lib.formats.cython_util' extension
2023-09-27T06:03:00,776   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2023-09-27T06:03:01,156   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:03:01,157                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:03:01,158                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:03:01,158                    from MDAnalysis/lib/formats/cython_util.c:1199:
2023-09-27T06:03:01,159   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:03:01,159      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:03:01,160         |  ^~~~~~~
2023-09-27T06:03:29,927   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:03:30,059   building 'MDAnalysis.analysis.encore.cutils' extension
2023-09-27T06:03:30,060   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis
2023-09-27T06:03:30,061   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2023-09-27T06:03:30,061   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-27T06:03:30,447   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:03:30,447                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:03:30,448                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:03:30,449                    from MDAnalysis/analysis/encore/cutils.c:1182:
2023-09-27T06:03:30,449   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:03:30,450      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:03:30,450         |  ^~~~~~~
2023-09-27T06:03:36,571   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:03:36,679   building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
2023-09-27T06:03:36,679   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2023-09-27T06:03:36,680   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2023-09-27T06:03:36,682   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-27T06:03:37,094   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:03:37,094                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:03:37,095                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:03:37,096                    from MDAnalysis/analysis/encore/clustering/affinityprop.c:1188:
2023-09-27T06:03:37,096   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:03:37,097      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:03:37,097         |  ^~~~~~~
2023-09-27T06:03:53,170   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-27T06:03:54,167   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:03:54,293   building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
2023-09-27T06:03:54,293   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:03:54,294   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-27T06:03:54,295   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-27T06:03:55,108   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O3
2023-09-27T06:03:55,523   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:03:55,524                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:03:55,526                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:03:55,527                    from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:1188:
2023-09-27T06:03:55,527   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:03:55,528      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:03:55,529         |  ^~~~~~~
2023-09-27T06:04:04,680   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:04:04,808   building 'MDAnalysis.lib._cutil' extension
2023-09-27T06:04:04,809   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-27T06:04:05,072   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:04:05,073                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:04:05,074                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:04:05,074                    from MDAnalysis/lib/_cutil.cpp:1200:
2023-09-27T06:04:05,075   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:04:05,075      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:04:05,076         |  ^~~~~~~
2023-09-27T06:04:08,861   In file included from MDAnalysis/lib/_cutil.cpp:1226:
2023-09-27T06:04:08,862   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,862     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,863         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,864   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,864     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,865         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,866   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,866     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,867         |             ^~~~~~~~~~~~~~
2023-09-27T06:04:08,867   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,868     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,869         |             ^~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,869   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,870     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,871         |             ^~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,871   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,872     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,873         |             ^~~~~~~~~~~
2023-09-27T06:04:08,873   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,874     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,875         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,875   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,876     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,877         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,878   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,878     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2023-09-27T06:04:08,879         |             ^~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,879   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,880     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-27T06:04:08,880         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,881   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,881     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2023-09-27T06:04:08,882         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,883   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,883     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2023-09-27T06:04:08,884         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,884   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,885     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-27T06:04:08,885         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,886   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,886     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-27T06:04:08,887         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,888   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,888     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-27T06:04:08,889         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-27T06:04:08,890   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function]
2023-09-27T06:04:08,890     116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box)
2023-09-27T06:04:08,891         |             ^~~~~~~~~~
2023-09-27T06:04:50,243   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:04:50,544   building 'MDAnalysis.lib._augment' extension
2023-09-27T06:04:50,544   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-27T06:04:50,819   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:04:50,819                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:04:50,820                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:04:50,820                    from MDAnalysis/lib/_augment.cpp:1195:
2023-09-27T06:04:50,821   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:04:50,821      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:04:50,822         |  ^~~~~~~
2023-09-27T06:05:26,486   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:05:26,768   building 'MDAnalysis.lib.nsgrid' extension
2023-09-27T06:05:26,769   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-27T06:05:30,250   In file included from MDAnalysis/lib/nsgrid.cpp:1193:
2023-09-27T06:05:30,250   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,251     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,252         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,253   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,253     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,254         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,254   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,255     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,256         |             ^~~~~~~~~~~~~~
2023-09-27T06:05:30,256   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,257     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,258         |             ^~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,258   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,259     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,260         |             ^~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,260   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,261     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,261         |             ^~~~~~~~~~~
2023-09-27T06:05:30,262   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,262     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,263         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,264   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,264     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,265         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,266   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,266     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2023-09-27T06:05:30,267         |             ^~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,267   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,268     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-27T06:05:30,269         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,269   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,270     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2023-09-27T06:05:30,271         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,271   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,272     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2023-09-27T06:05:30,273         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,274   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,274     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2023-09-27T06:05:30,275         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,276   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,276     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-27T06:05:30,277         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:05:30,277   /tmp/pip-wheel-6x55smw3/mdanalysis_a67db884331f49848ff9e0f13739c97c/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2023-09-27T06:05:30,278     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2023-09-27T06:05:30,278         |             ^~~~~~~~~~~~~~~~~~~~
2023-09-27T06:06:06,237   In file included from /usr/include/c++/12/vector:70,
2023-09-27T06:06:06,237                    from MDAnalysis/lib/nsgrid.cpp:1191:
2023-09-27T06:06:06,237   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-27T06:06:06,238   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-27T06:06:06,239     439 |       vector<_Tp, _Alloc>::
2023-09-27T06:06:06,239         |       ^~~~~~~~~~~~~~~~~~~
2023-09-27T06:06:06,279   In file included from /usr/include/c++/12/vector:64:
2023-09-27T06:06:06,279   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-27T06:06:06,280       inlined from ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’ at MDAnalysis/lib/nsgrid.cpp:21317:39:
2023-09-27T06:06:06,281   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-27T06:06:06,281    1287 |           _M_realloc_insert(end(), __x);
2023-09-27T06:06:06,282         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T06:06:06,327   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-27T06:06:06,328   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-27T06:06:06,329     439 |       vector<_Tp, _Alloc>::
2023-09-27T06:06:06,329         |       ^~~~~~~~~~~~~~~~~~~
2023-09-27T06:06:06,678   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-27T06:06:06,679       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2023-09-27T06:06:06,679       inlined from ‘std::vector<double> __pyx_convert_vector_from_py_double(PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:4628:26,
2023-09-27T06:06:06,680       inlined from ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:26422:50:
2023-09-27T06:06:06,681   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-27T06:06:06,681     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-09-27T06:06:06,682         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T06:06:10,117   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:06:10,415   building 'MDAnalysis.coordinates.timestep' extension
2023-09-27T06:06:10,415   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates
2023-09-27T06:06:10,417   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2023-09-27T06:06:10,674   In file included from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2023-09-27T06:06:10,674                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T06:06:10,675                    from /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T06:06:10,675                    from MDAnalysis/coordinates/timestep.cpp:1196:
2023-09-27T06:06:10,676   /tmp/pip-build-env-7jk2hc4h/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T06:06:10,676      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T06:06:10,677         |  ^~~~~~~
2023-09-27T06:06:38,166   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so
2023-09-27T06:06:38,357   installing to build/bdist.linux-armv7l/wheel
2023-09-27T06:06:38,358   running install
2023-09-27T06:06:38,382   running install_lib
2023-09-27T06:06:38,388   creating build/bdist.linux-armv7l
2023-09-27T06:06:38,391   creating build/bdist.linux-armv7l/wheel
2023-09-27T06:06:38,393   creating build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:38,394   creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,396   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,399   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,401   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,404   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,407   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,411   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,414   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2023-09-27T06:06:38,416   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:38,419   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:38,421   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:38,424   creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,425   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,428   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,430   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,432   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,434   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,437   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,440   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,443   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,445   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,448   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,451   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,453   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,480   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,483   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,486   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,508   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,510   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,513   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,517   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,519   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,522   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,524   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,527   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,530   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,534   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,538   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,541   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,544   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,547   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,550   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,553   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,556   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,559   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,562   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,565   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,567   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,569   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2023-09-27T06:06:38,572   creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,574   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,576   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,579   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,581   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,584   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,587   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,590   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,593   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,595   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2023-09-27T06:06:38,598   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,600   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,601   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,610   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,612   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,622   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,624   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,635   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,638   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,640   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2023-09-27T06:06:38,643   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-27T06:06:38,644   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2023-09-27T06:06:38,648   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-27T06:06:38,649   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2023-09-27T06:06:38,652   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,655   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,656   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,670   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,673   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,675   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,678   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,692   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,695   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2023-09-27T06:06:38,696   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2023-09-27T06:06:38,699   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2023-09-27T06:06:38,700   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2023-09-27T06:06:38,703   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2023-09-27T06:06:38,706   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,708   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,710   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,720   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,722   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,724   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,727   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2023-09-27T06:06:38,730   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,733   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,735   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,738   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,740   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,743   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,745   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,749   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,751   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,753   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,756   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,760   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-27T06:06:38,761   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-27T06:06:38,764   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-27T06:06:38,767   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-27T06:06:38,769   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2023-09-27T06:06:38,770   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,773   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,776   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-27T06:06:38,777   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-27T06:06:38,780   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2023-09-27T06:06:38,782   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,785   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,788   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-27T06:06:38,789   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-27T06:06:38,791   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2023-09-27T06:06:38,793   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,796   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,798   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,801   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,804   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-27T06:06:38,805   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-27T06:06:38,807   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-27T06:06:38,810   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-27T06:06:38,814   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2023-09-27T06:06:38,817   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,820   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,822   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,825   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,827   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2023-09-27T06:06:38,830   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-27T06:06:38,831   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-27T06:06:38,834   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-27T06:06:38,836   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-27T06:06:38,839   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2023-09-27T06:06:38,841   creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,842   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,844   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,846   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,849   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,852   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,854   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,856   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2023-09-27T06:06:38,858   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:38,861   creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,862   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,864   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,868   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,870   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,873   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2023-09-27T06:06:38,876   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:38,877   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:38,935   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:38,941   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:38,946   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:38,990   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,000   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,028   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,039   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,063   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,065   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,069   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,071   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,073   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,075   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,077   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,109   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,111   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,113   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,114   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,116   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,119   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,121   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,123   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,125   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,142   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,186   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,188   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,190   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,217   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,242   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,242   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,245   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,246   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,248   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,251   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,253   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,255   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,258   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2023-09-27T06:06:39,260   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,261   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,263   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,267   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,269   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,271   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2023-09-27T06:06:39,273   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,308   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2023-09-27T06:06:39,334   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,336   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,342   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,345   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,348   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,369   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,380   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,382   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,394   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,415   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,418   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,420   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,447   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2023-09-27T06:06:39,448   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2023-09-27T06:06:39,451   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2023-09-27T06:06:39,452   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2023-09-27T06:06:39,454   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src
2023-09-27T06:06:39,455   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-27T06:06:39,456   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-27T06:06:39,458   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-27T06:06:39,462   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2023-09-27T06:06:39,463   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,465   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2023-09-27T06:06:39,468   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,469   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,472   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,474   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,476   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,478   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,481   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,483   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,485   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,487   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,489   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,492   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,494   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,496   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,499   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,501   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,503   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,505   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,507   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,510   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,512   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,514   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,516   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,518   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,520   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,522   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,524   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,526   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,529   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2023-09-27T06:06:39,531   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-27T06:06:39,532   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-27T06:06:39,535   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-27T06:06:39,538   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-27T06:06:39,540   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2023-09-27T06:06:39,542   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:39,545   creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,545   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,550   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,553   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,556   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,560   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,562   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,565   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,567   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,569   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2023-09-27T06:06:39,573   creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-27T06:06:39,574   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-27T06:06:39,576   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2023-09-27T06:06:39,578   creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-27T06:06:39,579   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-27T06:06:39,582   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-27T06:06:39,584   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2023-09-27T06:06:39,586   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2023-09-27T06:06:39,588   running install_egg_info
2023-09-27T06:06:39,592   Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.1-py3.11.egg-info
2023-09-27T06:06:39,605   running install_scripts
2023-09-27T06:06:39,668   creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.1.dist-info/WHEEL
2023-09-27T06:06:39,671   creating '/tmp/pip-wheel-yz6en676/.tmp-idtuxops/MDAnalysis-2.6.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-27T06:06:39,674   adding 'MDAnalysis/__init__.py'
2023-09-27T06:06:39,676   adding 'MDAnalysis/authors.py'
2023-09-27T06:06:39,677   adding 'MDAnalysis/due.py'
2023-09-27T06:06:39,679   adding 'MDAnalysis/exceptions.py'
2023-09-27T06:06:39,681   adding 'MDAnalysis/units.py'
2023-09-27T06:06:39,682   adding 'MDAnalysis/version.py'
2023-09-27T06:06:39,685   adding 'MDAnalysis/analysis/__init__.py'
2023-09-27T06:06:39,693   adding 'MDAnalysis/analysis/align.py'
2023-09-27T06:06:39,695   adding 'MDAnalysis/analysis/atomicdistances.py'
2023-09-27T06:06:39,699   adding 'MDAnalysis/analysis/base.py'
2023-09-27T06:06:39,703   adding 'MDAnalysis/analysis/bat.py'
2023-09-27T06:06:39,707   adding 'MDAnalysis/analysis/contacts.py'
2023-09-27T06:06:39,714   adding 'MDAnalysis/analysis/density.py'
2023-09-27T06:06:39,717   adding 'MDAnalysis/analysis/dielectric.py'
2023-09-27T06:06:39,720   adding 'MDAnalysis/analysis/diffusionmap.py'
2023-09-27T06:06:39,724   adding 'MDAnalysis/analysis/dihedrals.py'
2023-09-27T06:06:39,726   adding 'MDAnalysis/analysis/distances.py'
2023-09-27T06:06:39,730   adding 'MDAnalysis/analysis/gnm.py'
2023-09-27T06:06:39,733   adding 'MDAnalysis/analysis/helix_analysis.py'
2023-09-27T06:06:39,736   adding 'MDAnalysis/analysis/leaflet.py'
2023-09-27T06:06:39,739   adding 'MDAnalysis/analysis/lineardensity.py'
2023-09-27T06:06:39,743   adding 'MDAnalysis/analysis/msd.py'
2023-09-27T06:06:39,745   adding 'MDAnalysis/analysis/nucleicacids.py'
2023-09-27T06:06:39,748   adding 'MDAnalysis/analysis/nuclinfo.py'
2023-09-27T06:06:39,754   adding 'MDAnalysis/analysis/pca.py'
2023-09-27T06:06:39,758   adding 'MDAnalysis/analysis/polymer.py'
2023-09-27T06:06:39,771   adding 'MDAnalysis/analysis/psa.py'
2023-09-27T06:06:39,776   adding 'MDAnalysis/analysis/rdf.py'
2023-09-27T06:06:39,782   adding 'MDAnalysis/analysis/rms.py'
2023-09-27T06:06:39,789   adding 'MDAnalysis/analysis/waterdynamics.py'
2023-09-27T06:06:39,792   adding 'MDAnalysis/analysis/data/__init__.py'
2023-09-27T06:06:39,794   adding 'MDAnalysis/analysis/data/filenames.py'
2023-09-27T06:06:39,798   adding 'MDAnalysis/analysis/data/janin_ref_data.npy'
2023-09-27T06:06:39,804   adding 'MDAnalysis/analysis/data/rama_ref_data.npy'
2023-09-27T06:06:39,806   adding 'MDAnalysis/analysis/encore/__init__.py'
2023-09-27T06:06:39,808   adding 'MDAnalysis/analysis/encore/bootstrap.py'
2023-09-27T06:06:39,810   adding 'MDAnalysis/analysis/encore/confdistmatrix.py'
2023-09-27T06:06:39,812   adding 'MDAnalysis/analysis/encore/covariance.py'
2023-09-27T06:06:39,845   adding 'MDAnalysis/analysis/encore/cutils.c'
2023-09-27T06:06:39,908   adding 'MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:39,911   adding 'MDAnalysis/analysis/encore/cutils.pyx'
2023-09-27T06:06:39,917   adding 'MDAnalysis/analysis/encore/similarity.py'
2023-09-27T06:06:39,920   adding 'MDAnalysis/analysis/encore/utils.py'
2023-09-27T06:06:39,922   adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py'
2023-09-27T06:06:39,924   adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py'
2023-09-27T06:06:39,925   adding 'MDAnalysis/analysis/encore/clustering/__init__.py'
2023-09-27T06:06:39,967   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c'
2023-09-27T06:06:40,097   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:40,103   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx'
2023-09-27T06:06:40,105   adding 'MDAnalysis/analysis/encore/clustering/cluster.py'
2023-09-27T06:06:40,107   adding 'MDAnalysis/analysis/encore/clustering/include/ap.h'
2023-09-27T06:06:40,109   adding 'MDAnalysis/analysis/encore/clustering/src/ap.c'
2023-09-27T06:06:40,111   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py'
2023-09-27T06:06:40,112   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py'
2023-09-27T06:06:40,114   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py'
2023-09-27T06:06:40,149   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c'
2023-09-27T06:06:40,240   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:40,245   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx'
2023-09-27T06:06:40,247   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h'
2023-09-27T06:06:40,249   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c'
2023-09-27T06:06:40,251   adding 'MDAnalysis/analysis/hbonds/__init__.py'
2023-09-27T06:06:40,252   adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py'
2023-09-27T06:06:40,255   adding 'MDAnalysis/analysis/hole2/__init__.py'
2023-09-27T06:06:40,260   adding 'MDAnalysis/analysis/hole2/hole.py'
2023-09-27T06:06:40,262   adding 'MDAnalysis/analysis/hole2/templates.py'
2023-09-27T06:06:40,265   adding 'MDAnalysis/analysis/hole2/utils.py'
2023-09-27T06:06:40,267   adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py'
2023-09-27T06:06:40,271   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py'
2023-09-27T06:06:40,274   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py'
2023-09-27T06:06:40,284   adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py'
2023-09-27T06:06:40,286   adding 'MDAnalysis/analysis/legacy/__init__.py'
2023-09-27T06:06:40,290   adding 'MDAnalysis/analysis/legacy/x3dna.py'
2023-09-27T06:06:40,293   adding 'MDAnalysis/auxiliary/EDR.py'
2023-09-27T06:06:40,295   adding 'MDAnalysis/auxiliary/XVG.py'
2023-09-27T06:06:40,298   adding 'MDAnalysis/auxiliary/__init__.py'
2023-09-27T06:06:40,303   adding 'MDAnalysis/auxiliary/base.py'
2023-09-27T06:06:40,305   adding 'MDAnalysis/auxiliary/core.py'
2023-09-27T06:06:40,307   adding 'MDAnalysis/converters/OpenMM.py'
2023-09-27T06:06:40,309   adding 'MDAnalysis/converters/OpenMMParser.py'
2023-09-27T06:06:40,311   adding 'MDAnalysis/converters/ParmEd.py'
2023-09-27T06:06:40,313   adding 'MDAnalysis/converters/ParmEdParser.py'
2023-09-27T06:06:40,318   adding 'MDAnalysis/converters/RDKit.py'
2023-09-27T06:06:40,320   adding 'MDAnalysis/converters/RDKitParser.py'
2023-09-27T06:06:40,322   adding 'MDAnalysis/converters/__init__.py'
2023-09-27T06:06:40,324   adding 'MDAnalysis/coordinates/CRD.py'
2023-09-27T06:06:40,327   adding 'MDAnalysis/coordinates/DCD.py'
2023-09-27T06:06:40,329   adding 'MDAnalysis/coordinates/DLPoly.py'
2023-09-27T06:06:40,330   adding 'MDAnalysis/coordinates/DMS.py'
2023-09-27T06:06:40,332   adding 'MDAnalysis/coordinates/FHIAIMS.py'
2023-09-27T06:06:40,334   adding 'MDAnalysis/coordinates/GMS.py'
2023-09-27T06:06:40,336   adding 'MDAnalysis/coordinates/GRO.py'
2023-09-27T06:06:40,338   adding 'MDAnalysis/coordinates/GSD.py'
2023-09-27T06:06:40,345   adding 'MDAnalysis/coordinates/H5MD.py'
2023-09-27T06:06:40,347   adding 'MDAnalysis/coordinates/INPCRD.py'
2023-09-27T06:06:40,350   adding 'MDAnalysis/coordinates/LAMMPS.py'
2023-09-27T06:06:40,352   adding 'MDAnalysis/coordinates/MMTF.py'
2023-09-27T06:06:40,354   adding 'MDAnalysis/coordinates/MOL2.py'
2023-09-27T06:06:40,355   adding 'MDAnalysis/coordinates/NAMDBIN.py'
2023-09-27T06:06:40,362   adding 'MDAnalysis/coordinates/PDB.py'
2023-09-27T06:06:40,365   adding 'MDAnalysis/coordinates/PDBQT.py'
2023-09-27T06:06:40,367   adding 'MDAnalysis/coordinates/PQR.py'
2023-09-27T06:06:40,368   adding 'MDAnalysis/coordinates/ParmEd.py'
2023-09-27T06:06:40,370   adding 'MDAnalysis/coordinates/TNG.py'
2023-09-27T06:06:40,376   adding 'MDAnalysis/coordinates/TRJ.py'
2023-09-27T06:06:40,378   adding 'MDAnalysis/coordinates/TRR.py'
2023-09-27T06:06:40,381   adding 'MDAnalysis/coordinates/TRZ.py'
2023-09-27T06:06:40,383   adding 'MDAnalysis/coordinates/TXYZ.py'
2023-09-27T06:06:40,385   adding 'MDAnalysis/coordinates/XDR.py'
2023-09-27T06:06:40,386   adding 'MDAnalysis/coordinates/XTC.py'
2023-09-27T06:06:40,389   adding 'MDAnalysis/coordinates/XYZ.py'
2023-09-27T06:06:40,393   adding 'MDAnalysis/coordinates/__init__.py'
2023-09-27T06:06:40,401   adding 'MDAnalysis/coordinates/base.py'
2023-09-27T06:06:40,404   adding 'MDAnalysis/coordinates/chain.py'
2023-09-27T06:06:40,407   adding 'MDAnalysis/coordinates/chemfiles.py'
2023-09-27T06:06:40,408   adding 'MDAnalysis/coordinates/core.py'
2023-09-27T06:06:40,411   adding 'MDAnalysis/coordinates/memory.py'
2023-09-27T06:06:40,413   adding 'MDAnalysis/coordinates/null.py'
2023-09-27T06:06:40,488   adding 'MDAnalysis/coordinates/timestep.cpp'
2023-09-27T06:06:40,739   adding 'MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:40,749   adding 'MDAnalysis/coordinates/timestep.pxd'
2023-09-27T06:06:40,753   adding 'MDAnalysis/coordinates/timestep.pyx'
2023-09-27T06:06:40,755   adding 'MDAnalysis/core/__init__.py'
2023-09-27T06:06:40,757   adding 'MDAnalysis/core/_get_readers.py'
2023-09-27T06:06:40,758   adding 'MDAnalysis/core/accessors.py'
2023-09-27T06:06:40,779   adding 'MDAnalysis/core/groups.py'
2023-09-27T06:06:40,787   adding 'MDAnalysis/core/selection.py'
2023-09-27T06:06:40,790   adding 'MDAnalysis/core/topology.py'
2023-09-27T06:06:40,801   adding 'MDAnalysis/core/topologyattrs.py'
2023-09-27T06:06:40,805   adding 'MDAnalysis/core/topologyobjects.py'
2023-09-27T06:06:40,813   adding 'MDAnalysis/core/universe.py'
2023-09-27T06:06:40,816   adding 'MDAnalysis/lib/NeighborSearch.py'
2023-09-27T06:06:40,817   adding 'MDAnalysis/lib/__init__.py'
2023-09-27T06:06:40,909   adding 'MDAnalysis/lib/_augment.cpp'
2023-09-27T06:06:41,204   adding 'MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:41,216   adding 'MDAnalysis/lib/_augment.pyx'
2023-09-27T06:06:41,315   adding 'MDAnalysis/lib/_cutil.cpp'
2023-09-27T06:06:41,691   adding 'MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:41,707   adding 'MDAnalysis/lib/_cutil.pxd'
2023-09-27T06:06:41,709   adding 'MDAnalysis/lib/_cutil.pyx'
2023-09-27T06:06:41,711   adding 'MDAnalysis/lib/_distopia.py'
2023-09-27T06:06:41,758   adding 'MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:41,873   adding 'MDAnalysis/lib/c_distances.c'
2023-09-27T06:06:42,278   adding 'MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:42,296   adding 'MDAnalysis/lib/c_distances.pyx'
2023-09-27T06:06:42,333   adding 'MDAnalysis/lib/c_distances_openmp.c'
2023-09-27T06:06:42,454   adding 'MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:42,461   adding 'MDAnalysis/lib/c_distances_openmp.pyx'
2023-09-27T06:06:42,463   adding 'MDAnalysis/lib/correlations.py'
2023-09-27T06:06:42,469   adding 'MDAnalysis/lib/distances.py'
2023-09-27T06:06:42,472   adding 'MDAnalysis/lib/log.py'
2023-09-27T06:06:42,474   adding 'MDAnalysis/lib/mdamath.py'
2023-09-27T06:06:42,578   adding 'MDAnalysis/lib/nsgrid.cpp'
2023-09-27T06:06:42,949   adding 'MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:42,966   adding 'MDAnalysis/lib/nsgrid.pyx'
2023-09-27T06:06:42,968   adding 'MDAnalysis/lib/picklable_file_io.py'
2023-09-27T06:06:42,970   adding 'MDAnalysis/lib/pkdtree.py'
2023-09-27T06:06:43,014   adding 'MDAnalysis/lib/qcprot.c'
2023-09-27T06:06:43,122   adding 'MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:43,128   adding 'MDAnalysis/lib/qcprot.pyx'
2023-09-27T06:06:43,136   adding 'MDAnalysis/lib/transformations.py'
2023-09-27T06:06:43,147   adding 'MDAnalysis/lib/util.py'
2023-09-27T06:06:43,150   adding 'MDAnalysis/lib/formats/__init__.py'
2023-09-27T06:06:43,235   adding 'MDAnalysis/lib/formats/cython_util.c'
2023-09-27T06:06:43,476   adding 'MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:43,486   adding 'MDAnalysis/lib/formats/cython_util.pxd'
2023-09-27T06:06:43,487   adding 'MDAnalysis/lib/formats/cython_util.pyx'
2023-09-27T06:06:43,608   adding 'MDAnalysis/lib/formats/libdcd.c'
2023-09-27T06:06:44,022   adding 'MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:44,039   adding 'MDAnalysis/lib/formats/libdcd.pxd'
2023-09-27T06:06:44,042   adding 'MDAnalysis/lib/formats/libdcd.pyx'
2023-09-27T06:06:44,162   adding 'MDAnalysis/lib/formats/libmdaxdr.c'
2023-09-27T06:06:44,611   adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T06:06:44,630   adding 'MDAnalysis/lib/formats/libmdaxdr.pxd'
2023-09-27T06:06:44,633   adding 'MDAnalysis/lib/formats/libmdaxdr.pyx'
2023-09-27T06:06:44,635   adding 'MDAnalysis/lib/formats/include/endianswap.h'
2023-09-27T06:06:44,636   adding 'MDAnalysis/lib/formats/include/fastio.h'
2023-09-27T06:06:44,640   adding 'MDAnalysis/lib/formats/include/readdcd.h'
2023-09-27T06:06:44,641   adding 'MDAnalysis/lib/formats/include/trr_seek.h'
2023-09-27T06:06:44,644   adding 'MDAnalysis/lib/formats/include/xdrfile.h'
2023-09-27T06:06:44,645   adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h'
2023-09-27T06:06:44,646   adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h'
2023-09-27T06:06:44,648   adding 'MDAnalysis/lib/formats/include/xtc_seek.h'
2023-09-27T06:06:44,650   adding 'MDAnalysis/lib/formats/src/trr_seek.c'
2023-09-27T06:06:44,656   adding 'MDAnalysis/lib/formats/src/xdrfile.c'
2023-09-27T06:06:44,658   adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c'
2023-09-27T06:06:44,660   adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c'
2023-09-27T06:06:44,661   adding 'MDAnalysis/lib/formats/src/xtc_seek.c'
2023-09-27T06:06:44,665   adding 'MDAnalysis/lib/include/calc_distances.h'
2023-09-27T06:06:44,667   adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd'
2023-09-27T06:06:44,669   adding 'MDAnalysis/lib/src/transformations/AUTHOR'
2023-09-27T06:06:44,670   adding 'MDAnalysis/lib/src/transformations/LICENCE'
2023-09-27T06:06:44,680   adding 'MDAnalysis/lib/src/transformations/transformations.c'
2023-09-27T06:06:44,683   adding 'MDAnalysis/selections/__init__.py'
2023-09-27T06:06:44,684   adding 'MDAnalysis/selections/base.py'
2023-09-27T06:06:44,686   adding 'MDAnalysis/selections/charmm.py'
2023-09-27T06:06:44,687   adding 'MDAnalysis/selections/gromacs.py'
2023-09-27T06:06:44,688   adding 'MDAnalysis/selections/jmol.py'
2023-09-27T06:06:44,690   adding 'MDAnalysis/selections/pymol.py'
2023-09-27T06:06:44,691   adding 'MDAnalysis/selections/vmd.py'
2023-09-27T06:06:44,693   adding 'MDAnalysis/tests/__init__.py'
2023-09-27T06:06:44,694   adding 'MDAnalysis/tests/datafiles.py'
2023-09-27T06:06:44,697   adding 'MDAnalysis/topology/CRDParser.py'
2023-09-27T06:06:44,698   adding 'MDAnalysis/topology/DLPolyParser.py'
2023-09-27T06:06:44,700   adding 'MDAnalysis/topology/DMSParser.py'
2023-09-27T06:06:44,701   adding 'MDAnalysis/topology/ExtendedPDBParser.py'
2023-09-27T06:06:44,702   adding 'MDAnalysis/topology/FHIAIMSParser.py'
2023-09-27T06:06:44,704   adding 'MDAnalysis/topology/GMSParser.py'
2023-09-27T06:06:44,705   adding 'MDAnalysis/topology/GROParser.py'
2023-09-27T06:06:44,707   adding 'MDAnalysis/topology/GSDParser.py'
2023-09-27T06:06:44,708   adding 'MDAnalysis/topology/HoomdXMLParser.py'
2023-09-27T06:06:44,711   adding 'MDAnalysis/topology/ITPParser.py'
2023-09-27T06:06:44,714   adding 'MDAnalysis/topology/LAMMPSParser.py'
2023-09-27T06:06:44,715   adding 'MDAnalysis/topology/MMTFParser.py'
2023-09-27T06:06:44,717   adding 'MDAnalysis/topology/MOL2Parser.py'
2023-09-27T06:06:44,719   adding 'MDAnalysis/topology/MinimalParser.py'
2023-09-27T06:06:44,721   adding 'MDAnalysis/topology/PDBParser.py'
2023-09-27T06:06:44,722   adding 'MDAnalysis/topology/PDBQTParser.py'
2023-09-27T06:06:44,724   adding 'MDAnalysis/topology/PQRParser.py'
2023-09-27T06:06:44,726   adding 'MDAnalysis/topology/PSFParser.py'
2023-09-27T06:06:44,727   adding 'MDAnalysis/topology/ParmEdParser.py'
2023-09-27T06:06:44,730   adding 'MDAnalysis/topology/TOPParser.py'
2023-09-27T06:06:44,732   adding 'MDAnalysis/topology/TPRParser.py'
2023-09-27T06:06:44,733   adding 'MDAnalysis/topology/TXYZParser.py'
2023-09-27T06:06:44,735   adding 'MDAnalysis/topology/XYZParser.py'
2023-09-27T06:06:44,737   adding 'MDAnalysis/topology/__init__.py'
2023-09-27T06:06:44,739   adding 'MDAnalysis/topology/base.py'
2023-09-27T06:06:44,740   adding 'MDAnalysis/topology/core.py'
2023-09-27T06:06:44,742   adding 'MDAnalysis/topology/guessers.py'
2023-09-27T06:06:44,744   adding 'MDAnalysis/topology/tables.py'
2023-09-27T06:06:44,746   adding 'MDAnalysis/topology/tpr/__init__.py'
2023-09-27T06:06:44,748   adding 'MDAnalysis/topology/tpr/obj.py'
2023-09-27T06:06:44,750   adding 'MDAnalysis/topology/tpr/setting.py'
2023-09-27T06:06:44,753   adding 'MDAnalysis/topology/tpr/utils.py'
2023-09-27T06:06:44,755   adding 'MDAnalysis/transformations/__init__.py'
2023-09-27T06:06:44,757   adding 'MDAnalysis/transformations/base.py'
2023-09-27T06:06:44,758   adding 'MDAnalysis/transformations/boxdimensions.py'
2023-09-27T06:06:44,760   adding 'MDAnalysis/transformations/fit.py'
2023-09-27T06:06:44,762   adding 'MDAnalysis/transformations/nojump.py'
2023-09-27T06:06:44,763   adding 'MDAnalysis/transformations/positionaveraging.py'
2023-09-27T06:06:44,765   adding 'MDAnalysis/transformations/rotate.py'
2023-09-27T06:06:44,767   adding 'MDAnalysis/transformations/translate.py'
2023-09-27T06:06:44,768   adding 'MDAnalysis/transformations/wrap.py'
2023-09-27T06:06:44,770   adding 'MDAnalysis/visualization/__init__.py'
2023-09-27T06:06:44,772   adding 'MDAnalysis/visualization/streamlines.py'
2023-09-27T06:06:44,776   adding 'MDAnalysis/visualization/streamlines_3D.py'
2023-09-27T06:06:44,779   adding 'MDAnalysis-2.6.1.dist-info/AUTHORS'
2023-09-27T06:06:44,782   adding 'MDAnalysis-2.6.1.dist-info/LICENSE'
2023-09-27T06:06:44,787   adding 'MDAnalysis-2.6.1.dist-info/METADATA'
2023-09-27T06:06:44,788   adding 'MDAnalysis-2.6.1.dist-info/WHEEL'
2023-09-27T06:06:44,789   adding 'MDAnalysis-2.6.1.dist-info/top_level.txt'
2023-09-27T06:06:44,793   adding 'MDAnalysis-2.6.1.dist-info/RECORD'
2023-09-27T06:06:44,896   removing build/bdist.linux-armv7l/wheel
2023-09-27T06:06:45,173   Building wheel for mdanalysis (pyproject.toml): finished with status 'done'
2023-09-27T06:06:45,375   Created wheel for mdanalysis: filename=MDAnalysis-2.6.1-cp311-cp311-linux_armv7l.whl size=9552360 sha256=d5d44fe745731a30207cb8cdcc25a38c9f7c192ed28c4ee4d1ca0587e586afd7
2023-09-27T06:06:45,376   Stored in directory: /tmp/pip-ephem-wheel-cache-_7w719px/wheels/a0/58/97/03977a87636bbfbed4f8e309535f04a29f2aaf057b21fd7f08
2023-09-27T06:06:45,416 Successfully built mdanalysis
2023-09-27T06:06:45,647 Removed build tracker: '/tmp/pip-build-tracker-oigygkzm'