2023-09-27T08:28:00,505 Created temporary directory: /tmp/pip-build-tracker-2d_7hbgr
2023-09-27T08:28:00,506 Initialized build tracking at /tmp/pip-build-tracker-2d_7hbgr
2023-09-27T08:28:00,507 Created build tracker: /tmp/pip-build-tracker-2d_7hbgr
2023-09-27T08:28:00,508 Entered build tracker: /tmp/pip-build-tracker-2d_7hbgr
2023-09-27T08:28:00,509 Created temporary directory: /tmp/pip-wheel-ys0jad1s
2023-09-27T08:28:00,514 Created temporary directory: /tmp/pip-ephem-wheel-cache-ubaa3cwy
2023-09-27T08:28:00,543 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T08:28:00,547 2 location(s) to search for versions of moleculekit:
2023-09-27T08:28:00,547 * https://pypi.org/simple/moleculekit/
2023-09-27T08:28:00,547 * https://www.piwheels.org/simple/moleculekit/
2023-09-27T08:28:00,547 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-09-27T08:28:00,548 Getting page https://pypi.org/simple/moleculekit/
2023-09-27T08:28:00,550 Found index url https://pypi.org/simple/
2023-09-27T08:28:00,935 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-09-27T08:28:00,972   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,972   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-09-27T08:28:00,973   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,974   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-09-27T08:28:00,974   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,975   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-09-27T08:28:00,976   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,976   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-09-27T08:28:00,977   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,978   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-09-27T08:28:00,979   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,979   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-09-27T08:28:00,980   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,981   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-09-27T08:28:00,981   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,982   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-09-27T08:28:00,982   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,983   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-09-27T08:28:00,983   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,984   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-09-27T08:28:00,985   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,985   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-09-27T08:28:00,986   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,987   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-09-27T08:28:00,987   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,988   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-09-27T08:28:00,989   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,989   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-09-27T08:28:00,990   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,990   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-09-27T08:28:00,991   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,992   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-09-27T08:28:00,992   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,993   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-09-27T08:28:00,993   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,994   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-09-27T08:28:00,994   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,995   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-09-27T08:28:00,996   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,996   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-09-27T08:28:00,997   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,998   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-09-27T08:28:00,998   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:00,999   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-09-27T08:28:01,000   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,000   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-09-27T08:28:01,001   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,002   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-09-27T08:28:01,002   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,003   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-09-27T08:28:01,003   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,004   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-09-27T08:28:01,005   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,005   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-09-27T08:28:01,006   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,007   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-09-27T08:28:01,007   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,008   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-09-27T08:28:01,009   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,009   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-09-27T08:28:01,010   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,011   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-09-27T08:28:01,011   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,012   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-09-27T08:28:01,013   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-27T08:28:01,014   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-09-27T08:28:01,079   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-09-27T08:28:01,115   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-09-27T08:28:01,116   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-09-27T08:28:01,117   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-09-27T08:28:01,118   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-09-27T08:28:01,119   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-09-27T08:28:01,120   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-09-27T08:28:01,121   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-09-27T08:28:01,121   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-09-27T08:28:01,122   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-09-27T08:28:01,124   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-09-27T08:28:01,124   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-09-27T08:28:01,125 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-09-27T08:28:01,126 Getting page https://www.piwheels.org/simple/moleculekit/
2023-09-27T08:28:01,127 Found index url https://www.piwheels.org/simple/
2023-09-27T08:28:01,288 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-09-27T08:28:01,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,397   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,398   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,398   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,399   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,399   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,400   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,400   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,408   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,408   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,409   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,409   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,410   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,410   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,411   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,411   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,412   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,413   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,413   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,414   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,414   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,415   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,416   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,416   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,417   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,417   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,418   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,418   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,419   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,419   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,420   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,420   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,421   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,421   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,422   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,423   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,423   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,424   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,424   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,425   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,425   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,426   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,426   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,427   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,428   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,428   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,429   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,429   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,430   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,430   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,431   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,432   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,432   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,432   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,433   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,433   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,434   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,435   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,435   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,436   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,437   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,437   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,438   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,438   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,439   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,440   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,440   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,440   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,441   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,441   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,442   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,445   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,446   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,447   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,448   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,448   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,449   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,449   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,450   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,451   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,453   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,454   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,454   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,455   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,455   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,456   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,457   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,457   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,458   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,458   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,459   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,459   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,460   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-27T08:28:01,461   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,462   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,462   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,463   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,464   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-09-27T08:28:01,475 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-09-27T08:28:01,475 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-09-27T08:28:01,515 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-09-27T08:28:01,537 Collecting moleculekit==1.7.8
2023-09-27T08:28:01,539   Created temporary directory: /tmp/pip-unpack-5azamvcc
2023-09-27T08:28:01,769   Downloading moleculekit-1.7.8.tar.gz (6.2 MB)
2023-09-27T08:28:05,014   Added moleculekit==1.7.8 from https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz to build tracker '/tmp/pip-build-tracker-2d_7hbgr'
2023-09-27T08:28:05,027   Created temporary directory: /tmp/pip-build-env-wcxftm_t
2023-09-27T08:28:05,034   Installing build dependencies: started
2023-09-27T08:28:05,036   Running command pip subprocess to install build dependencies
2023-09-27T08:28:06,274   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-27T08:28:06,814   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T08:28:08,367   Collecting setuptools
2023-09-27T08:28:08,369     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-27T08:28:08,374     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-27T08:28:09,091     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T08:28:09,098     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T08:28:09,105     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T08:28:09,112     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T08:28:09,119     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-09-27T08:28:09,499   Collecting numpy>=1.18.5
2023-09-27T08:28:10,687     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp311-cp311-linux_armv7l.whl (12.5 MB)
2023-09-27T08:28:12,749   Collecting Cython>=0.29.21
2023-09-27T08:28:13,665     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-09-27T08:28:14,160   Collecting toml
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2023-09-27T08:28:14,286     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
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2023-09-27T08:28:17,063   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-09-27T08:28:17,095     Creating /tmp/pip-build-env-wcxftm_t/overlay/local/bin
2023-09-27T08:28:17,097     changing mode of /tmp/pip-build-env-wcxftm_t/overlay/local/bin/versioneer to 755
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2023-09-27T08:28:32,198   Successfully installed Cython-3.0.2 numpy-1.25.2 setuptools-68.2.2 toml-0.10.2 versioneer-0.28
2023-09-27T08:28:33,201   Installing build dependencies: finished with status 'done'
2023-09-27T08:28:33,204   Getting requirements to build wheel: started
2023-09-27T08:28:33,205   Running command Getting requirements to build wheel
2023-09-27T08:29:08,513   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2023-09-27T08:29:08,516   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2023-09-27T08:29:08,517   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-27T08:29:08,518   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-27T08:29:08,518   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-27T08:29:08,519   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-09-27T08:29:08,520   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2023-09-27T08:29:08,782   running egg_info
2023-09-27T08:29:08,788   writing moleculekit.egg-info/PKG-INFO
2023-09-27T08:29:08,791   writing dependency_links to moleculekit.egg-info/dependency_links.txt
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2023-09-27T08:29:08,816   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,817   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,817   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,818   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,818   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,819   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,820   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,820   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,821   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,821   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,822   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,823   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,823   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,824   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,824   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,825   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,825   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,826   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,826   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,827   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,827   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,828   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,829   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,829   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,830   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,830   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,831   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,831   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,832   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,833   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,833   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,833   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,834   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,834   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,835   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,835   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,835   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,836   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,836   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,837   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,837   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,838   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,838   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,838   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,839   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,839   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,840   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,840   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,841   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,841   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,843   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:08,843   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:08,865   reading manifest template 'MANIFEST.in'
2023-09-27T08:29:09,076   no previously-included directories found matching 'moleculekit/test-data'
2023-09-27T08:29:09,077   no previously-included directories found matching 'moleculekit/tests'
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2023-09-27T08:29:09,079   adding license file 'LICENSE'
2023-09-27T08:29:09,092   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:10,286   Getting requirements to build wheel: finished with status 'done'
2023-09-27T08:29:10,300   Installing backend dependencies: started
2023-09-27T08:29:10,301   Running command pip subprocess to install backend dependencies
2023-09-27T08:29:11,496   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-27T08:29:12,047   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-27T08:29:12,560   Collecting wheel
2023-09-27T08:29:12,576     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-27T08:29:14,763   Installing collected packages: wheel
2023-09-27T08:29:14,982     Creating /tmp/pip-build-env-wcxftm_t/normal/local/bin
2023-09-27T08:29:14,985     changing mode of /tmp/pip-build-env-wcxftm_t/normal/local/bin/wheel to 755
2023-09-27T08:29:14,996   Successfully installed wheel-0.41.2
2023-09-27T08:29:15,534   Installing backend dependencies: finished with status 'done'
2023-09-27T08:29:15,536   Created temporary directory: /tmp/pip-modern-metadata-svtdkhrc
2023-09-27T08:29:15,538   Preparing metadata (pyproject.toml): started
2023-09-27T08:29:15,539   Running command Preparing metadata (pyproject.toml)
2023-09-27T08:29:17,782   running dist_info
2023-09-27T08:29:17,784   creating /tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info
2023-09-27T08:29:17,789   writing /tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/PKG-INFO
2023-09-27T08:29:17,793   writing dependency_links to /tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/dependency_links.txt
2023-09-27T08:29:17,795   writing requirements to /tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/requires.txt
2023-09-27T08:29:17,796   writing top-level names to /tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/top_level.txt
2023-09-27T08:29:17,797   writing manifest file '/tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:17,820   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,820   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,821   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,821   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,822   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,822   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,823   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,823   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,824   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,824   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,825   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,825   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,826   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,827   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,827   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,828   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,828   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,829   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,830   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,830   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,831   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,831   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,831   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,832   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,832   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,833   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,833   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,834   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,834   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,835   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,835   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,836   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,837   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,837   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,838   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,838   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,839   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,840   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,840   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,841   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,841   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,842   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,843   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,843   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,844   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,844   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,845   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,845   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,845   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,846   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,846   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,847   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,847   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:17,848   reading manifest file '/tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:17,848   reading manifest template 'MANIFEST.in'
2023-09-27T08:29:18,072   no previously-included directories found matching 'moleculekit/test-data'
2023-09-27T08:29:18,073   no previously-included directories found matching 'moleculekit/tests'
2023-09-27T08:29:18,074   no previously-included directories found matching 'package'
2023-09-27T08:29:18,074   adding license file 'LICENSE'
2023-09-27T08:29:18,085   writing manifest file '/tmp/pip-modern-metadata-svtdkhrc/moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:18,092   creating '/tmp/pip-modern-metadata-svtdkhrc/moleculekit-1.7.8.dist-info'
2023-09-27T08:29:18,535   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-27T08:29:18,540   Source in /tmp/pip-wheel-ys0jad1s/moleculekit_6178858b24364188a3a1973cd1435012 has version 1.7.8, which satisfies requirement moleculekit==1.7.8 from https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz
2023-09-27T08:29:18,541   Removed moleculekit==1.7.8 from https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz from build tracker '/tmp/pip-build-tracker-2d_7hbgr'
2023-09-27T08:29:18,546 Created temporary directory: /tmp/pip-unpack-npkp7cw8
2023-09-27T08:29:18,547 Created temporary directory: /tmp/pip-unpack-k9x8aaka
2023-09-27T08:29:18,555 Building wheels for collected packages: moleculekit
2023-09-27T08:29:18,559   Created temporary directory: /tmp/pip-wheel-cek2m7qm
2023-09-27T08:29:18,560   Destination directory: /tmp/pip-wheel-cek2m7qm
2023-09-27T08:29:18,562   Building wheel for moleculekit (pyproject.toml): started
2023-09-27T08:29:18,563   Running command Building wheel for moleculekit (pyproject.toml)
2023-09-27T08:29:20,675   running bdist_wheel
2023-09-27T08:29:20,690   running build
2023-09-27T08:29:20,691   running build_py
2023-09-27T08:29:20,697   creating build
2023-09-27T08:29:20,697   creating build/lib.linux-armv7l-cpython-311
2023-09-27T08:29:20,698   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,699   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,704   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,706   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,709   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,711   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,713   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,715   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,717   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,719   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,721   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,722   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,724   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,726   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,728   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,730   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,732   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,733   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,735   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,737   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,739   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,744   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:20,746   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-09-27T08:29:20,747   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-09-27T08:29:20,749   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-09-27T08:29:20,749   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-09-27T08:29:20,751   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-09-27T08:29:20,753   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-09-27T08:29:20,755   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-09-27T08:29:20,758   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,759   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,762   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,764   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,765   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,768   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,770   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-09-27T08:29:20,773   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,774   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,776   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,779   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,781   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,783   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,785   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,788   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,790   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,792   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,794   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,797   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,798   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,801   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-09-27T08:29:20,804   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,805   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,807   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,809   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,811   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,813   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,815   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,817   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,819   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,821   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,823   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,825   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,827   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,829   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,831   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,833   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-09-27T08:29:20,836   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-09-27T08:29:20,837   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-09-27T08:29:20,839   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-09-27T08:29:20,842   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-09-27T08:29:20,842   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-09-27T08:29:20,844   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-09-27T08:29:20,848   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-09-27T08:29:20,851   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-09-27T08:29:20,852   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-09-27T08:29:20,855   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-09-27T08:29:20,856   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-09-27T08:29:20,859   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-09-27T08:29:20,862   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-09-27T08:29:20,863   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-09-27T08:29:20,865   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-09-27T08:29:20,867   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-09-27T08:29:20,869   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-09-27T08:29:20,871   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-09-27T08:29:20,872   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-09-27T08:29:20,873   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-09-27T08:29:20,876   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-09-27T08:29:20,877   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-09-27T08:29:20,878   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-09-27T08:29:20,881   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-09-27T08:29:20,882   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-09-27T08:29:20,885   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-09-27T08:29:20,886   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-09-27T08:29:20,888   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-09-27T08:29:20,889   running egg_info
2023-09-27T08:29:20,894   writing moleculekit.egg-info/PKG-INFO
2023-09-27T08:29:20,897   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-09-27T08:29:20,898   writing requirements to moleculekit.egg-info/requires.txt
2023-09-27T08:29:20,899   writing top-level names to moleculekit.egg-info/top_level.txt
2023-09-27T08:29:20,910   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,911   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,911   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,912   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,913   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,913   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,914   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,915   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,915   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,916   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,916   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,917   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,918   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,918   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,919   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,919   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,919   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,920   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,920   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,921   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,921   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,922   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,922   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,923   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,924   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,924   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,925   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,925   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,926   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,926   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,927   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,928   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,928   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,929   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,929   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,929   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,930   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,930   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,931   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,931   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,932   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,932   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,933   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,934   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,934   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,935   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,935   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,936   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,936   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,937   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,937   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,938   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,938   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,938   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,939   dependency /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-27T08:29:20,939   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:20,940   reading manifest template 'MANIFEST.in'
2023-09-27T08:29:21,147   no previously-included directories found matching 'moleculekit/test-data'
2023-09-27T08:29:21,148   no previously-included directories found matching 'moleculekit/tests'
2023-09-27T08:29:21,149   no previously-included directories found matching 'package'
2023-09-27T08:29:21,149   adding license file 'LICENSE'
2023-09-27T08:29:21,163   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-27T08:29:21,171   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-09-27T08:29:21,172   !!

2023-09-27T08:29:21,173           ********************************************************************************
2023-09-27T08:29:21,174           ############################
2023-09-27T08:29:21,175           # Package would be ignored #
2023-09-27T08:29:21,175           ############################
2023-09-27T08:29:21,176           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-09-27T08:29:21,176           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,178           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,178           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-09-27T08:29:21,179           to the `packages` configuration field.

2023-09-27T08:29:21,180           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,180           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,181           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,182           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,183           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,185           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-09-27T08:29:21,185           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-09-27T08:29:21,186           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,187           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,187           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,188           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,189           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,190           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,190                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,191                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,191                 directory, all directories are treated like packages.
2023-09-27T08:29:21,192           ********************************************************************************

2023-09-27T08:29:21,192   !!
2023-09-27T08:29:21,193     check.warn(importable)
2023-09-27T08:29:21,193   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-09-27T08:29:21,194   !!

2023-09-27T08:29:21,195           ********************************************************************************
2023-09-27T08:29:21,195           ############################
2023-09-27T08:29:21,196           # Package would be ignored #
2023-09-27T08:29:21,196           ############################
2023-09-27T08:29:21,196           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-09-27T08:29:21,197           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,198           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,198           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-09-27T08:29:21,199           to the `packages` configuration field.

2023-09-27T08:29:21,200           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,200           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,201           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,202           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,203           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,205           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-09-27T08:29:21,205           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-09-27T08:29:21,206           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,206           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,207           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,208           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,209           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,210           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,211                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,211                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,212                 directory, all directories are treated like packages.
2023-09-27T08:29:21,212           ********************************************************************************

2023-09-27T08:29:21,213   !!
2023-09-27T08:29:21,214     check.warn(importable)
2023-09-27T08:29:21,215   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-09-27T08:29:21,215   !!

2023-09-27T08:29:21,217           ********************************************************************************
2023-09-27T08:29:21,217           ############################
2023-09-27T08:29:21,218           # Package would be ignored #
2023-09-27T08:29:21,218           ############################
2023-09-27T08:29:21,218           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-09-27T08:29:21,219           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,225           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,232           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-09-27T08:29:21,235           to the `packages` configuration field.

2023-09-27T08:29:21,237           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,237           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,238           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,239           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,241           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,244           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-09-27T08:29:21,244           already explicitly excluding 'moleculekit.distance_utils' via
2023-09-27T08:29:21,245           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,245           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,246           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,247           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,248           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,250           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,251                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,251                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,252                 directory, all directories are treated like packages.
2023-09-27T08:29:21,252           ********************************************************************************

2023-09-27T08:29:21,254   !!
2023-09-27T08:29:21,256     check.warn(importable)
2023-09-27T08:29:21,258   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-09-27T08:29:21,264   !!

2023-09-27T08:29:21,266           ********************************************************************************
2023-09-27T08:29:21,266           ############################
2023-09-27T08:29:21,267           # Package would be ignored #
2023-09-27T08:29:21,267           ############################
2023-09-27T08:29:21,268           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-09-27T08:29:21,268           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,269           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,270           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-09-27T08:29:21,271           to the `packages` configuration field.

2023-09-27T08:29:21,274           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,275           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,276           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,290           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,291           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,292           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-09-27T08:29:21,292           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-09-27T08:29:21,293           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,293           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,294           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,295           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,296           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,297           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,298                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,298                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,298                 directory, all directories are treated like packages.
2023-09-27T08:29:21,301           ********************************************************************************

2023-09-27T08:29:21,306   !!
2023-09-27T08:29:21,308     check.warn(importable)
2023-09-27T08:29:21,311   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-09-27T08:29:21,313   !!

2023-09-27T08:29:21,316           ********************************************************************************
2023-09-27T08:29:21,317           ############################
2023-09-27T08:29:21,317           # Package would be ignored #
2023-09-27T08:29:21,318           ############################
2023-09-27T08:29:21,319           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-09-27T08:29:21,320           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,322           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,324           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-09-27T08:29:21,325           to the `packages` configuration field.

2023-09-27T08:29:21,326           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,326           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,327           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,328           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,329           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,330           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-09-27T08:29:21,331           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-09-27T08:29:21,331           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,332           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,332           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,334           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,335           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,336           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,337                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,338                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,338                 directory, all directories are treated like packages.
2023-09-27T08:29:21,339           ********************************************************************************

2023-09-27T08:29:21,340   !!
2023-09-27T08:29:21,340     check.warn(importable)
2023-09-27T08:29:21,340   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-09-27T08:29:21,341   !!

2023-09-27T08:29:21,342           ********************************************************************************
2023-09-27T08:29:21,342           ############################
2023-09-27T08:29:21,342           # Package would be ignored #
2023-09-27T08:29:21,343           ############################
2023-09-27T08:29:21,343           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-09-27T08:29:21,344           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,345           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,345           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-09-27T08:29:21,346           to the `packages` configuration field.

2023-09-27T08:29:21,346           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,347           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,347           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,349           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,350           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,351           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-09-27T08:29:21,352           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-09-27T08:29:21,352           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,353           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,354           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,355           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,356           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,358           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,359                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,359                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,360                 directory, all directories are treated like packages.
2023-09-27T08:29:21,360           ********************************************************************************

2023-09-27T08:29:21,361   !!
2023-09-27T08:29:21,362     check.warn(importable)
2023-09-27T08:29:21,362   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-09-27T08:29:21,363   !!

2023-09-27T08:29:21,364           ********************************************************************************
2023-09-27T08:29:21,365           ############################
2023-09-27T08:29:21,365           # Package would be ignored #
2023-09-27T08:29:21,366           ############################
2023-09-27T08:29:21,367           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-09-27T08:29:21,367           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,369           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,369           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-09-27T08:29:21,370           to the `packages` configuration field.

2023-09-27T08:29:21,370           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,371           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,371           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,372           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,373           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,374           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-09-27T08:29:21,375           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-09-27T08:29:21,375           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,376           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,376           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,377           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,378           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,379           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,380                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,380                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,381                 directory, all directories are treated like packages.
2023-09-27T08:29:21,381           ********************************************************************************

2023-09-27T08:29:21,383   !!
2023-09-27T08:29:21,383     check.warn(importable)
2023-09-27T08:29:21,384   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-09-27T08:29:21,385   !!

2023-09-27T08:29:21,386           ********************************************************************************
2023-09-27T08:29:21,387           ############################
2023-09-27T08:29:21,387           # Package would be ignored #
2023-09-27T08:29:21,388           ############################
2023-09-27T08:29:21,388           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-09-27T08:29:21,389           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,390           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,390           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-09-27T08:29:21,391           to the `packages` configuration field.

2023-09-27T08:29:21,392           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,393           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,393           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,394           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,396           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,397           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-09-27T08:29:21,398           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-09-27T08:29:21,398           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,399           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,400           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,401           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,402           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,404                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,405                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,405                 directory, all directories are treated like packages.
2023-09-27T08:29:21,406           ********************************************************************************

2023-09-27T08:29:21,407   !!
2023-09-27T08:29:21,408     check.warn(importable)
2023-09-27T08:29:21,408   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-09-27T08:29:21,409   !!

2023-09-27T08:29:21,410           ********************************************************************************
2023-09-27T08:29:21,410           ############################
2023-09-27T08:29:21,411           # Package would be ignored #
2023-09-27T08:29:21,412           ############################
2023-09-27T08:29:21,412           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-09-27T08:29:21,412           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,421           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,440           package, please make sure that 'moleculekit.share' is explicitly added
2023-09-27T08:29:21,471           to the `packages` configuration field.

2023-09-27T08:29:21,512           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,514           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,517           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,550           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,551           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,552           If you don't want 'moleculekit.share' to be distributed and are
2023-09-27T08:29:21,553           already explicitly excluding 'moleculekit.share' via
2023-09-27T08:29:21,553           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,554           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,555           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,556           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,557           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,558           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,559                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,560                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,560                 directory, all directories are treated like packages.
2023-09-27T08:29:21,561           ********************************************************************************

2023-09-27T08:29:21,562   !!
2023-09-27T08:29:21,563     check.warn(importable)
2023-09-27T08:29:21,563   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-09-27T08:29:21,564   !!

2023-09-27T08:29:21,566           ********************************************************************************
2023-09-27T08:29:21,566           ############################
2023-09-27T08:29:21,567           # Package would be ignored #
2023-09-27T08:29:21,567           ############################
2023-09-27T08:29:21,568           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-09-27T08:29:21,568           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,569           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,570           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-09-27T08:29:21,570           to the `packages` configuration field.

2023-09-27T08:29:21,571           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,571           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,572           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,573           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,574           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,575           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-09-27T08:29:21,575           already explicitly excluding 'moleculekit.share.atomselect' via
2023-09-27T08:29:21,576           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,576           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,577           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,577           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,579           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,580           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,581                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,581                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,582                 directory, all directories are treated like packages.
2023-09-27T08:29:21,582           ********************************************************************************

2023-09-27T08:29:21,583   !!
2023-09-27T08:29:21,584     check.warn(importable)
2023-09-27T08:29:21,584   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-09-27T08:29:21,585   !!

2023-09-27T08:29:21,586           ********************************************************************************
2023-09-27T08:29:21,586           ############################
2023-09-27T08:29:21,587           # Package would be ignored #
2023-09-27T08:29:21,587           ############################
2023-09-27T08:29:21,588           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-09-27T08:29:21,588           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,589           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,590           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-09-27T08:29:21,590           to the `packages` configuration field.

2023-09-27T08:29:21,592           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,592           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,593           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,594           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,595           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,596           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-09-27T08:29:21,597           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-09-27T08:29:21,597           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,597           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,598           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,599           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,599           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,601           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,601                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,601                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,602                 directory, all directories are treated like packages.
2023-09-27T08:29:21,602           ********************************************************************************

2023-09-27T08:29:21,603   !!
2023-09-27T08:29:21,604     check.warn(importable)
2023-09-27T08:29:21,604   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-09-27T08:29:21,605   !!

2023-09-27T08:29:21,606           ********************************************************************************
2023-09-27T08:29:21,606           ############################
2023-09-27T08:29:21,606           # Package would be ignored #
2023-09-27T08:29:21,607           ############################
2023-09-27T08:29:21,608           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-09-27T08:29:21,608           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,609           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,609           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-09-27T08:29:21,610           to the `packages` configuration field.

2023-09-27T08:29:21,611           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,611           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,612           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,613           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,614           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,615           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-09-27T08:29:21,616           already explicitly excluding 'moleculekit.tmalign' via
2023-09-27T08:29:21,616           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,617           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,617           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,618           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,619           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,621           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,622                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,622                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,623                 directory, all directories are treated like packages.
2023-09-27T08:29:21,624           ********************************************************************************

2023-09-27T08:29:21,625   !!
2023-09-27T08:29:21,625     check.warn(importable)
2023-09-27T08:29:21,625   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-09-27T08:29:21,626   !!

2023-09-27T08:29:21,627           ********************************************************************************
2023-09-27T08:29:21,627           ############################
2023-09-27T08:29:21,628           # Package would be ignored #
2023-09-27T08:29:21,628           ############################
2023-09-27T08:29:21,629           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-09-27T08:29:21,629           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,630           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,631           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-09-27T08:29:21,631           to the `packages` configuration field.

2023-09-27T08:29:21,632           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,633           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,633           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,634           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,635           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,636           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-09-27T08:29:21,637           already explicitly excluding 'moleculekit.tmalign.include' via
2023-09-27T08:29:21,637           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,638           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,638           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,639           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,640           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,642           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,642                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,643                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,643                 directory, all directories are treated like packages.
2023-09-27T08:29:21,644           ********************************************************************************

2023-09-27T08:29:21,645   !!
2023-09-27T08:29:21,645     check.warn(importable)
2023-09-27T08:29:21,646   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-09-27T08:29:21,646   !!

2023-09-27T08:29:21,647           ********************************************************************************
2023-09-27T08:29:21,648           ############################
2023-09-27T08:29:21,649           # Package would be ignored #
2023-09-27T08:29:21,649           ############################
2023-09-27T08:29:21,650           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-09-27T08:29:21,650           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,651           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,652           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-09-27T08:29:21,652           to the `packages` configuration field.

2023-09-27T08:29:21,653           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,654           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,654           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,655           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,656           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,657           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-09-27T08:29:21,657           already explicitly excluding 'moleculekit.tmalign.src' via
2023-09-27T08:29:21,658           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,658           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,659           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,659           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,661           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,662           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,663                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,663                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,663                 directory, all directories are treated like packages.
2023-09-27T08:29:21,664           ********************************************************************************

2023-09-27T08:29:21,665   !!
2023-09-27T08:29:21,665     check.warn(importable)
2023-09-27T08:29:21,666   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-09-27T08:29:21,666   !!

2023-09-27T08:29:21,667           ********************************************************************************
2023-09-27T08:29:21,668           ############################
2023-09-27T08:29:21,668           # Package would be ignored #
2023-09-27T08:29:21,669           ############################
2023-09-27T08:29:21,669           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-09-27T08:29:21,670           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,671           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,671           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-09-27T08:29:21,672           to the `packages` configuration field.

2023-09-27T08:29:21,674           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,674           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,675           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,676           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,677           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,678           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-09-27T08:29:21,678           already explicitly excluding 'moleculekit.wrapping' via
2023-09-27T08:29:21,679           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,679           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,680           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,681           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,682           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,683           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,684                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,684                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,684                 directory, all directories are treated like packages.
2023-09-27T08:29:21,685           ********************************************************************************

2023-09-27T08:29:21,686   !!
2023-09-27T08:29:21,686     check.warn(importable)
2023-09-27T08:29:21,686   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-09-27T08:29:21,687   !!

2023-09-27T08:29:21,688           ********************************************************************************
2023-09-27T08:29:21,688           ############################
2023-09-27T08:29:21,689           # Package would be ignored #
2023-09-27T08:29:21,689           ############################
2023-09-27T08:29:21,690           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-09-27T08:29:21,690           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,691           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,691           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-09-27T08:29:21,692           to the `packages` configuration field.

2023-09-27T08:29:21,693           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,694           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,694           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,696           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,697           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,698           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-09-27T08:29:21,698           already explicitly excluding 'moleculekit.xtc_utils' via
2023-09-27T08:29:21,699           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,700           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,700           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,702           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,703           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,705           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,706                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,707                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,707                 directory, all directories are treated like packages.
2023-09-27T08:29:21,708           ********************************************************************************

2023-09-27T08:29:21,709   !!
2023-09-27T08:29:21,710     check.warn(importable)
2023-09-27T08:29:21,711   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-09-27T08:29:21,711   !!

2023-09-27T08:29:21,713           ********************************************************************************
2023-09-27T08:29:21,713           ############################
2023-09-27T08:29:21,714           # Package would be ignored #
2023-09-27T08:29:21,715           ############################
2023-09-27T08:29:21,716           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-09-27T08:29:21,716           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,717           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,718           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-09-27T08:29:21,718           to the `packages` configuration field.

2023-09-27T08:29:21,719           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,720           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,721           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,722           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,723           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,724           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-09-27T08:29:21,724           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-09-27T08:29:21,725           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,726           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,726           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,727           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,728           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,730           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,731                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,731                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,732                 directory, all directories are treated like packages.
2023-09-27T08:29:21,732           ********************************************************************************

2023-09-27T08:29:21,734   !!
2023-09-27T08:29:21,734     check.warn(importable)
2023-09-27T08:29:21,735   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-09-27T08:29:21,736   !!

2023-09-27T08:29:21,737           ********************************************************************************
2023-09-27T08:29:21,737           ############################
2023-09-27T08:29:21,738           # Package would be ignored #
2023-09-27T08:29:21,739           ############################
2023-09-27T08:29:21,739           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-09-27T08:29:21,740           but it is absent from setuptools' `packages` configuration.

2023-09-27T08:29:21,741           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-27T08:29:21,742           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-09-27T08:29:21,742           to the `packages` configuration field.

2023-09-27T08:29:21,744           Alternatively, you can also rely on setuptools' discovery methods
2023-09-27T08:29:21,745           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-27T08:29:21,745           instead of `find_packages(...)`/`find:`).

2023-09-27T08:29:21,747           You can read more about "package discovery" on setuptools documentation page:

2023-09-27T08:29:21,748           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-27T08:29:21,750           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-09-27T08:29:21,750           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-09-27T08:29:21,751           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-27T08:29:21,752           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-27T08:29:21,752           combination with a more fine grained `package-data` configuration.

2023-09-27T08:29:21,753           You can read more about "package data files" on setuptools documentation page:

2023-09-27T08:29:21,754           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-27T08:29:21,756           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-27T08:29:21,756                 even if it does not contain any `.py` files.
2023-09-27T08:29:21,757                 On the other hand, currently there is no concept of package data
2023-09-27T08:29:21,758                 directory, all directories are treated like packages.
2023-09-27T08:29:21,758           ********************************************************************************

2023-09-27T08:29:21,759   !!
2023-09-27T08:29:21,760     check.warn(importable)
2023-09-27T08:29:21,760   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:21,761   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:21,762   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-09-27T08:29:21,762   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-09-27T08:29:21,763   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-09-27T08:29:21,763   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-09-27T08:29:21,764   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-09-27T08:29:21,764   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-09-27T08:29:21,765   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-09-27T08:29:21,766   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-09-27T08:29:21,766   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-09-27T08:29:21,767   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-09-27T08:29:21,767   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-09-27T08:29:21,768   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-09-27T08:29:21,769   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-09-27T08:29:21,769   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-09-27T08:29:21,770   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-09-27T08:29:21,771   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-09-27T08:29:21,771   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-09-27T08:29:21,772   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-09-27T08:29:21,772   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-09-27T08:29:21,773   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,774   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,774   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,775   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,776   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,776   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,777   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,777   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,778   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,779   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,779   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,780   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,781   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,781   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,782   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,782   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,783   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,783   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,784   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,785   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,785   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,786   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,787   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,787   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,788   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,789   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,789   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,790   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,790   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,791   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,792   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,792   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,793   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,793   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,794   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,794   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,795   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,795   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,795   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,796   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,796   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,797   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,797   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,798   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,798   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,798   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,799   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,799   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,800   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,800   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,801   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,801   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,802   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,802   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,803   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,804   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,804   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,805   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,805   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,806   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,806   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,807   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,807   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,808   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,808   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,809   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,809   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,809   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,810   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,810   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,811   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,811   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,812   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,812   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,813   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,813   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,814   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,814   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,815   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,815   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,816   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,816   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,817   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,817   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,818   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,818   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,819   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,819   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,820   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,820   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,821   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,821   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,821   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,822   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,822   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,823   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,823   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,824   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,824   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,825   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,827   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,829   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,831   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,833   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,835   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,837   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,839   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,841   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,843   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,845   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,847   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,849   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,851   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,853   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,855   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,857   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,860   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,862   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,864   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,866   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,868   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,869   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,871   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,873   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,876   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,878   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,880   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,882   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,885   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,887   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,889   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,891   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,893   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,895   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,897   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,899   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,901   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,903   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,905   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,908   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,909   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,911   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,913   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,915   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,917   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,919   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,921   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,923   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,925   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,927   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,929   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,931   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,933   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,935   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,937   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,939   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,941   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,943   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,946   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,947   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,950   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,952   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,954   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,956   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,958   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,960   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,962   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,964   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,966   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,968   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,970   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,971   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,974   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,976   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,978   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,980   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-09-27T08:29:21,982   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-09-27T08:29:21,982   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-09-27T08:29:22,002   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-09-27T08:29:22,004   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-09-27T08:29:22,006   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-09-27T08:29:22,007   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-09-27T08:29:22,009   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-09-27T08:29:22,010   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-09-27T08:29:22,016   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-09-27T08:29:22,017   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-09-27T08:29:22,035   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-09-27T08:29:22,037   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-09-27T08:29:22,038   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-09-27T08:29:22,058   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-09-27T08:29:22,060   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-09-27T08:29:22,062   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-09-27T08:29:22,063   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-09-27T08:29:22,066   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-09-27T08:29:22,068   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-09-27T08:29:22,070   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-09-27T08:29:22,072   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-09-27T08:29:22,076   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-09-27T08:29:22,078   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-09-27T08:29:22,081   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-09-27T08:29:22,082   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-09-27T08:29:22,103   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-09-27T08:29:22,105   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-09-27T08:29:22,107   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-09-27T08:29:22,130   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-09-27T08:29:22,132   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-09-27T08:29:22,133   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-09-27T08:29:22,154   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-09-27T08:29:22,155   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-09-27T08:29:22,156   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-09-27T08:29:22,175   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-09-27T08:29:22,185   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-09-27T08:29:22,186   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.8'
2023-09-27T08:29:22,186   running build_ext
2023-09-27T08:29:22,195   building 'moleculekit.interactions.hbonds' extension
2023-09-27T08:29:22,195   creating build/temp.linux-armv7l-cpython-311
2023-09-27T08:29:22,196   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-09-27T08:29:22,197   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-09-27T08:29:22,197   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-09-27T08:29:22,198   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-09-27T08:29:22,510   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:29:22,511                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:29:22,511                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:29:22,512                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-09-27T08:29:22,512   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:29:22,513      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:29:22,513         |  ^~~~~~~
2023-09-27T08:29:52,920   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:29:53,203   building 'moleculekit.interactions.pipi' extension
2023-09-27T08:29:53,204   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-09-27T08:29:53,204   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-09-27T08:29:53,508   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:29:53,508                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:29:53,509                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:29:53,510                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-09-27T08:29:53,510   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:29:53,510      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:29:53,511         |  ^~~~~~~
2023-09-27T08:30:26,155   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:30:26,437   building 'moleculekit.interactions.cationpi' extension
2023-09-27T08:30:26,438   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-09-27T08:30:26,438   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-09-27T08:30:26,749   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:30:26,750                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:30:26,751                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:30:26,751                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-09-27T08:30:26,752   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:30:26,752      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:30:26,753         |  ^~~~~~~
2023-09-27T08:30:59,188   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:30:59,484   building 'moleculekit.interactions.sigmahole' extension
2023-09-27T08:30:59,485   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-09-27T08:30:59,486   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-09-27T08:30:59,792   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:30:59,792                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:30:59,793                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:30:59,793                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-09-27T08:30:59,794   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:30:59,794      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:30:59,795         |  ^~~~~~~
2023-09-27T08:31:31,842   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:31:32,130   building 'moleculekit.wrapping' extension
2023-09-27T08:31:32,131   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-09-27T08:31:32,131   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-09-27T08:31:32,457   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:31:32,457                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:31:32,458                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:31:32,459                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-09-27T08:31:32,459   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:31:32,460      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:31:32,461         |  ^~~~~~~
2023-09-27T08:32:00,770   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:32:00,957   building 'moleculekit.bondguesser_utils' extension
2023-09-27T08:32:00,959   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-09-27T08:32:00,960   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-09-27T08:32:01,267   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:32:01,268                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:32:01,268                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:32:01,269                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-09-27T08:32:01,269   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:32:01,270      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:32:01,270         |  ^~~~~~~
2023-09-27T08:32:03,562   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-09-27T08:32:03,562   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-27T08:32:03,563   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-09-27T08:32:03,564         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-09-27T08:32:03,564   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-27T08:32:03,565   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-09-27T08:32:03,566         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-09-27T08:32:03,567   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-27T08:32:03,567   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-09-27T08:32:03,568         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-09-27T08:32:03,569   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,569   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,570         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,570   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,571   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-27T08:32:03,572         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,572   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,573   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,574         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,575   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,575   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,576         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,576   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,577   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-27T08:32:03,577         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,578   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,578   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,578         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,579   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,579   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,580         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,580   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,581   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-27T08:32:03,582         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,582   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,583   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,584         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,584   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,585   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,586         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,587   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,588         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,589   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,590         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,591   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,593   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-27T08:32:03,594         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,595   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,595   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,596         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,596   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,597   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-27T08:32:03,597         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,598   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,598   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,599         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,599   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,600   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-27T08:32:03,600         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,601   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,602   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,602         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,603   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-27T08:32:03,604   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-27T08:32:03,605         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,611   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-09-27T08:32:03,612   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-27T08:32:03,613   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-09-27T08:32:03,614         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-27T08:32:03,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-27T08:32:03,615   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-09-27T08:32:03,616         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-27T08:32:30,077   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:32:30,343   building 'moleculekit.atomselect_utils' extension
2023-09-27T08:32:30,344   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-09-27T08:32:30,344   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-09-27T08:32:30,916   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:32:30,917                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:32:30,917                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:32:30,918                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-09-27T08:32:30,918   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:32:30,919      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:32:30,919         |  ^~~~~~~
2023-09-27T08:32:33,669   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-09-27T08:32:33,670   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-27T08:32:33,670   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-09-27T08:32:33,671         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-27T08:32:33,678   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-09-27T08:32:33,678   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-27T08:32:33,679   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-09-27T08:32:33,680         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T08:32:33,686   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-09-27T08:32:33,687   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-27T08:32:33,688   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-09-27T08:32:33,688         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T08:33:08,378   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:33:08,715   building 'moleculekit.distance_utils' extension
2023-09-27T08:33:08,716   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-09-27T08:33:08,717   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-09-27T08:33:09,034   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:33:09,035                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:33:09,035                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:33:09,036                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-09-27T08:33:09,037   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:33:09,037      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:33:09,038         |  ^~~~~~~
2023-09-27T08:33:45,913   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:33:46,205   building 'moleculekit.occupancy_utils' extension
2023-09-27T08:33:46,206   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-09-27T08:33:46,206   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-09-27T08:33:46,508   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:33:46,509                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:33:46,509                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:33:46,510                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-09-27T08:33:46,510   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:33:46,511      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:33:46,511         |  ^~~~~~~
2023-09-27T08:34:13,653   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:34:13,847   building 'moleculekit.xtc' extension
2023-09-27T08:34:13,848   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-09-27T08:34:13,848   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-09-27T08:34:13,849   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-09-27T08:34:14,495   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,496      66 |         "OK",
2023-09-27T08:34:14,497         |         ^~~~
2023-09-27T08:34:14,497   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,498      67 |         "Header",
2023-09-27T08:34:14,499         |         ^~~~~~~~
2023-09-27T08:34:14,500   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,500      68 |         "String",
2023-09-27T08:34:14,501         |         ^~~~~~~~
2023-09-27T08:34:14,502   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,503      69 |         "Double",
2023-09-27T08:34:14,504         |         ^~~~~~~~
2023-09-27T08:34:14,505   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,505      70 |         "Integer",
2023-09-27T08:34:14,506         |         ^~~~~~~~~
2023-09-27T08:34:14,507   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,507      71 |         "Float",
2023-09-27T08:34:14,508         |         ^~~~~~~
2023-09-27T08:34:14,509   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,509      72 |         "Unsigned integer",
2023-09-27T08:34:14,510         |         ^~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,511   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,512      73 |         "Compressed 3D coordinate",
2023-09-27T08:34:14,512         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,513   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,514      74 |         "Closing file",
2023-09-27T08:34:14,515         |         ^~~~~~~~~~~~~~
2023-09-27T08:34:14,515   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,516      75 |         "Magic number",
2023-09-27T08:34:14,516         |         ^~~~~~~~~~~~~~
2023-09-27T08:34:14,517   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,517      76 |         "Not enough memory",
2023-09-27T08:34:14,518         |         ^~~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,518   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,519      77 |         "End of file",
2023-09-27T08:34:14,519         |         ^~~~~~~~~~~~~
2023-09-27T08:34:14,520   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-27T08:34:14,521      78 |         "File not found"
2023-09-27T08:34:14,521         |         ^~~~~~~~~~~~~~~~
2023-09-27T08:34:14,522   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-09-27T08:34:14,522   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,523     459 |     while (size >= num && num_of_bits < 32)
2023-09-27T08:34:14,523         |            ~~~~~^~~~~~
2023-09-27T08:34:14,524   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-09-27T08:34:14,524   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,525     505 |     while (bytes[num_of_bytes] >= num)
2023-09-27T08:34:14,525         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-27T08:34:14,526   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-09-27T08:34:14,527   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,528     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-27T08:34:14,528         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,529   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,530     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-09-27T08:34:14,530         |                             ~~^~~~~~~~~~~~~~
2023-09-27T08:34:14,531   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,532     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-09-27T08:34:14,532         |                             ~~^~~~~~~~~~~~~~~~
2023-09-27T08:34:14,533   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-09-27T08:34:14,533   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,534     664 |                 if (lastbits < num_of_bits)
2023-09-27T08:34:14,535         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-09-27T08:34:14,535   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-09-27T08:34:14,536   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,537     785 |         if(size3>xfp->buf1size)
2023-09-27T08:34:14,538         |            ~~~~~^~~~~~~~~~~~~~
2023-09-27T08:34:14,538   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,539     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T08:34:14,539         |                          ^
2023-09-27T08:34:14,540   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,540     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,541         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,541   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,542     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,542         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,543   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,543     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,544         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,545   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,545     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,546         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,547   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,548     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,548         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,549   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,550     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-09-27T08:34:14,550         |                                    ~~~~~~~~~^~~~~~~~
2023-09-27T08:34:14,551   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,552     756 |         int smallidx,  minidx, maxidx;
2023-09-27T08:34:14,553         |                        ^~~~~~
2023-09-27T08:34:14,553   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,554     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-27T08:34:14,555         |                                ^~~~~~
2023-09-27T08:34:14,555   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-09-27T08:34:14,556     763 |         int errval=1;
2023-09-27T08:34:14,557         |             ^~~~~~
2023-09-27T08:34:14,557   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-09-27T08:34:14,558   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,559    1011 |         if(size3>xfp->buf1size)
2023-09-27T08:34:14,559         |            ~~~~~^~~~~~~~~~~~~~
2023-09-27T08:34:14,560   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,561    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-09-27T08:34:14,562         |                                 ~~~~~~~~^~~~~~~
2023-09-27T08:34:14,562   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,563    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-09-27T08:34:14,563         |                           ~~~~~~~~^~~~~~~
2023-09-27T08:34:14,564   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,564    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-09-27T08:34:14,565         |                           ~~~~~~~~^~~~~~~
2023-09-27T08:34:14,565   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,566    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-27T08:34:14,566         |                         ^
2023-09-27T08:34:14,567   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,567    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T08:34:14,568         |                          ^
2023-09-27T08:34:14,568   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,569    1275 |         if(tmp==(unsigned int)buf2[0])
2023-09-27T08:34:14,570         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,570   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,571    1001 |         int errval;
2023-09-27T08:34:14,572         |             ^~~~~~
2023-09-27T08:34:14,573   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-09-27T08:34:14,573   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,574    1316 |         if(size3>xfp->buf1size)
2023-09-27T08:34:14,575         |            ~~~~~^~~~~~~~~~~~~~
2023-09-27T08:34:14,576   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,576    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T08:34:14,577         |                          ^
2023-09-27T08:34:14,578   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,578    1289 |         int smallidx,  maxidx, minidx;
2023-09-27T08:34:14,579         |                                ^~~~~~
2023-09-27T08:34:14,580   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,580    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-09-27T08:34:14,581         |                                ^~~~~~
2023-09-27T08:34:14,582   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-09-27T08:34:14,582    1297 |         int errval=1;
2023-09-27T08:34:14,583         |             ^~~~~~
2023-09-27T08:34:14,584   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-09-27T08:34:14,584   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,585    1513 |         if(size3>xfp->buf1size) {
2023-09-27T08:34:14,586         |            ~~~~~^~~~~~~~~~~~~~
2023-09-27T08:34:14,586   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,587    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-27T08:34:14,587         |                         ^
2023-09-27T08:34:14,588   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-27T08:34:14,588    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-27T08:34:14,589         |                          ^
2023-09-27T08:34:14,589   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-27T08:34:14,590    1743 |         if(tmp==(unsigned int)buf2[0])
2023-09-27T08:34:14,590         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-27T08:34:14,591   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-27T08:34:14,591    1504 |         int errval=1;
2023-09-27T08:34:14,592         |             ^~~~~~
2023-09-27T08:34:17,436   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-09-27T08:34:17,706   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-09-27T08:34:18,483   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-09-27T08:34:18,484   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-09-27T08:34:18,485     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-09-27T08:34:18,485         |             ^~~
2023-09-27T08:34:18,493   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-09-27T08:34:18,493   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-09-27T08:34:18,494     418 |         int nf3 = nframes * 3;
2023-09-27T08:34:18,495         |             ^~~
2023-09-27T08:34:18,499   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-09-27T08:34:18,500   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-09-27T08:34:18,501     491 |         int reading_index = 0;
2023-09-27T08:34:18,502         |             ^~~~~~~~~~~~~
2023-09-27T08:34:18,502   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-09-27T08:34:18,503     492 |         int writing_index = 0;
2023-09-27T08:34:18,504         |             ^~~~~~~~~~~~~
2023-09-27T08:34:19,388   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-09-27T08:34:19,692   In file included from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-27T08:34:19,693                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-27T08:34:19,693                    from /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-27T08:34:19,694                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-09-27T08:34:19,694   /tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-27T08:34:19,694      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-27T08:34:19,695         |  ^~~~~~~
2023-09-27T08:34:43,678   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:34:43,956   building 'moleculekit.tmalign' extension
2023-09-27T08:34:43,957   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-09-27T08:34:43,957   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-09-27T08:34:43,959   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-09-27T08:35:17,877   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-wcxftm_t/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-09-27T08:35:40,530   In file included from /usr/include/c++/12/vector:70,
2023-09-27T08:35:40,530                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-09-27T08:35:40,531   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-27T08:35:40,531   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-27T08:35:40,532     439 |       vector<_Tp, _Alloc>::
2023-09-27T08:35:40,532         |       ^~~~~~~~~~~~~~~~~~~
2023-09-27T08:35:41,341   In file included from /usr/include/c++/12/vector:64:
2023-09-27T08:35:41,342   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-27T08:35:41,342       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20812:32,
2023-09-27T08:35:41,343       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-09-27T08:35:41,344   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-27T08:35:41,344    1287 |           _M_realloc_insert(end(), __x);
2023-09-27T08:35:41,345         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T08:35:41,345   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-27T08:35:41,346       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20826:33,
2023-09-27T08:35:41,347       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-09-27T08:35:41,347   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-27T08:35:41,348    1287 |           _M_realloc_insert(end(), __x);
2023-09-27T08:35:41,348         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T08:35:41,349   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-27T08:35:41,349       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20911:34,
2023-09-27T08:35:41,350       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-09-27T08:35:41,351   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-27T08:35:41,351    1287 |           _M_realloc_insert(end(), __x);
2023-09-27T08:35:41,352         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-27T08:35:43,733   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-09-27T08:35:44,121   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-09-27T08:35:44,122   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.8'
2023-09-27T08:35:44,122   installing to build/bdist.linux-armv7l/wheel
2023-09-27T08:35:44,123   running install
2023-09-27T08:35:44,146   running install_lib
2023-09-27T08:35:44,152   creating build/bdist.linux-armv7l
2023-09-27T08:35:44,153   creating build/bdist.linux-armv7l/wheel
2023-09-27T08:35:44,156   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,157   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,163   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-27T08:35:44,164   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-27T08:35:44,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-27T08:35:44,194   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-27T08:35:44,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-27T08:35:44,216   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-09-27T08:35:44,217   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-09-27T08:35:44,222   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-27T08:35:44,224   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-27T08:35:44,227   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-09-27T08:35:44,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-09-27T08:35:44,230   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-27T08:35:44,231   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-27T08:35:44,250   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-27T08:35:44,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,255   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-09-27T08:35:44,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-09-27T08:35:44,258   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-27T08:35:44,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-27T08:35:44,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-27T08:35:44,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-27T08:35:44,266   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-27T08:35:44,268   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-27T08:35:44,269   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-27T08:35:44,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-27T08:35:44,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-27T08:35:44,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-27T08:35:44,278   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-27T08:35:44,279   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-27T08:35:44,281   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-27T08:35:44,283   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,286   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-27T08:35:44,287   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-27T08:35:44,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-27T08:35:44,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-27T08:35:44,293   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-27T08:35:44,295   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,301   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-27T08:35:44,302   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-27T08:35:44,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-27T08:35:44,306   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-27T08:35:44,308   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-27T08:35:44,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,315   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-27T08:35:44,321   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,328   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,343   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,347   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-27T08:35:44,352   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-27T08:35:44,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-27T08:35:44,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-27T08:35:44,357   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,358   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,387   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-27T08:35:44,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,416   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-27T08:35:44,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-27T08:35:44,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-27T08:35:44,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:44,445   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-27T08:35:44,446   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-09-27T08:35:44,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-09-27T08:35:44,450   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-09-27T08:35:44,453   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,457   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,459   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,461   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,465   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,467   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,470   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,473   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,475   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,484   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,486   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,490   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,491   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,494   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,496   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,500   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,507   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,512   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,515   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,517   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,519   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,520   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,522   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,526   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,535   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,537   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,543   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,552   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,665   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,688   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,690   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-09-27T08:35:44,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,722   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,731   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,749   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,751   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,753   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,760   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,765   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-27T08:35:44,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-27T08:35:44,771   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-27T08:35:45,011   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-27T08:35:45,013   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,015   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,019   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-27T08:35:45,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-27T08:35:45,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-27T08:35:45,043   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,047   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,047   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,080   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-27T08:35:45,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-27T08:35:45,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-27T08:35:45,108   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,111   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,166   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-27T08:35:45,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-27T08:35:45,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-27T08:35:45,193   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-27T08:35:45,194   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-27T08:35:45,218   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-27T08:35:45,220   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-27T08:35:45,246   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-27T08:35:45,247   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-27T08:35:45,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-27T08:35:45,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,315   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,324   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,443   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,495   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-27T08:35:45,497   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-27T08:35:45,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-27T08:35:45,502   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-27T08:35:45,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-27T08:35:45,507   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-27T08:35:45,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-27T08:35:45,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-27T08:35:45,530   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-27T08:35:45,531   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-27T08:35:45,533   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-27T08:35:45,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-27T08:35:45,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,544   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,547   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-27T08:35:45,548   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-27T08:35:45,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-27T08:35:45,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,671   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-27T08:35:45,672   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-27T08:35:45,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-27T08:35:45,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-27T08:35:45,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-27T08:35:45,716   running install_egg_info
2023-09-27T08:35:45,721   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.8-py3.11.egg-info
2023-09-27T08:35:45,736   running install_scripts
2023-09-27T08:35:45,786   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.8.dist-info/WHEEL
2023-09-27T08:35:45,789   creating '/tmp/pip-wheel-cek2m7qm/.tmp-0rarpqb0/moleculekit-1.7.8-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-27T08:35:45,792   adding 'moleculekit/__init__.py'
2023-09-27T08:35:45,794   adding 'moleculekit/_version.py'
2023-09-27T08:35:45,797   adding 'moleculekit/align.py'
2023-09-27T08:35:46,122   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:46,137   adding 'moleculekit/bondguesser.py'
2023-09-27T08:35:46,382   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:46,393   adding 'moleculekit/config.py'
2023-09-27T08:35:46,395   adding 'moleculekit/dihedral.py'
2023-09-27T08:35:46,397   adding 'moleculekit/distance.py'
2023-09-27T08:35:46,695   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:46,708   adding 'moleculekit/home.py'
2023-09-27T08:35:46,710   adding 'moleculekit/logging.ini'
2023-09-27T08:35:46,723   adding 'moleculekit/molecule.py'
2023-09-27T08:35:46,956   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:46,966   adding 'moleculekit/opm.py'
2023-09-27T08:35:46,969   adding 'moleculekit/periodictable.py'
2023-09-27T08:35:46,971   adding 'moleculekit/pymolgraphics.py'
2023-09-27T08:35:46,972   adding 'moleculekit/rcsb.py'
2023-09-27T08:35:46,974   adding 'moleculekit/rdkitintegration.py'
2023-09-27T08:35:46,988   adding 'moleculekit/readers.py'
2023-09-27T08:35:47,583   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:47,611   adding 'moleculekit/util.py'
2023-09-27T08:35:47,612   adding 'moleculekit/version.py'
2023-09-27T08:35:47,614   adding 'moleculekit/viewer.py'
2023-09-27T08:35:47,616   adding 'moleculekit/vmd_wrapper'
2023-09-27T08:35:47,618   adding 'moleculekit/vmdgraphics.py'
2023-09-27T08:35:47,621   adding 'moleculekit/vmdviewer.py'
2023-09-27T08:35:47,857   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:47,871   adding 'moleculekit/writers.py'
2023-09-27T08:35:48,132   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:48,144   adding 'moleculekit/atomselect/__init__.py'
2023-09-27T08:35:48,146   adding 'moleculekit/atomselect/analyze.py'
2023-09-27T08:35:48,149   adding 'moleculekit/atomselect/atomselect.py'
2023-09-27T08:35:48,152   adding 'moleculekit/atomselect/languageparser.py'
2023-09-27T08:35:48,255   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-09-27T08:35:48,269   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-09-27T08:35:48,360   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-09-27T08:35:48,371   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-09-27T08:35:48,469   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-09-27T08:35:48,481   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-09-27T08:35:48,483   adding 'moleculekit/interactions/__init__.py'
2023-09-27T08:35:48,763   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:49,031   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:49,044   adding 'moleculekit/interactions/interactions.py'
2023-09-27T08:35:49,321   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:49,609   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-09-27T08:35:49,711   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-09-27T08:35:49,722   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-09-27T08:35:49,812   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-09-27T08:35:49,824   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-09-27T08:35:49,915   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-09-27T08:35:49,926   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-09-27T08:35:50,017   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-09-27T08:35:50,029   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-09-27T08:35:50,115   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-09-27T08:35:50,126   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-09-27T08:35:50,128   adding 'moleculekit/pdbx/__init__.py'
2023-09-27T08:35:50,131   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-09-27T08:35:50,135   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-09-27T08:35:50,137   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-09-27T08:35:50,139   adding 'moleculekit/pdbx/reader/__init__.py'
2023-09-27T08:35:50,141   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-09-27T08:35:50,143   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-09-27T08:35:50,145   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-09-27T08:35:50,146   adding 'moleculekit/pdbx/tests/__init__.py'
2023-09-27T08:35:50,149   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-09-27T08:35:50,150   adding 'moleculekit/pdbx/writer/__init__.py'
2023-09-27T08:35:50,152   adding 'moleculekit/ply/__init__.py'
2023-09-27T08:35:50,156   adding 'moleculekit/ply/lex.py'
2023-09-27T08:35:50,168   adding 'moleculekit/ply/yacc.py'
2023-09-27T08:35:50,171   adding 'moleculekit/projections/__init__.py'
2023-09-27T08:35:50,174   adding 'moleculekit/projections/metriccoordinate.py'
2023-09-27T08:35:50,177   adding 'moleculekit/projections/metricdihedral.py'
2023-09-27T08:35:50,182   adding 'moleculekit/projections/metricdistance.py'
2023-09-27T08:35:50,184   adding 'moleculekit/projections/metricfluctuation.py'
2023-09-27T08:35:50,186   adding 'moleculekit/projections/metricgyration.py'
2023-09-27T08:35:50,190   adding 'moleculekit/projections/metricplumed2.py'
2023-09-27T08:35:50,192   adding 'moleculekit/projections/metricrmsd.py'
2023-09-27T08:35:50,195   adding 'moleculekit/projections/metricsasa.py'
2023-09-27T08:35:50,197   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-09-27T08:35:50,199   adding 'moleculekit/projections/metricshell.py'
2023-09-27T08:35:50,201   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-09-27T08:35:50,203   adding 'moleculekit/projections/metrictmscore.py'
2023-09-27T08:35:50,205   adding 'moleculekit/projections/projection.py'
2023-09-27T08:35:50,207   adding 'moleculekit/projections/util.py'
2023-09-27T08:35:50,209   adding 'moleculekit/share/ALA.cif'
2023-09-27T08:35:50,211   adding 'moleculekit/share/backbone.cif'
2023-09-27T08:35:51,510   adding 'moleculekit/share/opm_sequences.json'
2023-09-27T08:35:51,621   adding 'moleculekit/share/atomselect/atomselect.json'
2023-09-27T08:35:51,625   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-09-27T08:35:51,627   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-09-27T08:35:51,628   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-09-27T08:35:51,630   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-09-27T08:35:51,631   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-09-27T08:35:51,633   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-09-27T08:35:51,634   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-09-27T08:35:51,636   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-09-27T08:35:51,637   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-09-27T08:35:51,639   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-09-27T08:35:51,640   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-09-27T08:35:51,642   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-09-27T08:35:51,644   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-09-27T08:35:51,645   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-09-27T08:35:51,647   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-09-27T08:35:51,649   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-09-27T08:35:51,650   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-09-27T08:35:51,652   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-09-27T08:35:51,654   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-09-27T08:35:51,656   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-09-27T08:35:51,658   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-09-27T08:35:51,660   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-09-27T08:35:51,662   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-09-27T08:35:51,663   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-09-27T08:35:51,665   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-09-27T08:35:51,666   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-09-27T08:35:51,668   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-09-27T08:35:51,670   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-09-27T08:35:51,671   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-09-27T08:35:51,673   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-09-27T08:35:51,674   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-09-27T08:35:51,676   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-09-27T08:35:51,677   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-09-27T08:35:51,679   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-09-27T08:35:51,680   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-09-27T08:35:51,682   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-09-27T08:35:51,683   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-09-27T08:35:51,685   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-09-27T08:35:51,687   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-09-27T08:35:51,688   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-09-27T08:35:51,690   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-09-27T08:35:51,692   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-09-27T08:35:51,693   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-09-27T08:35:51,695   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-09-27T08:35:51,697   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-09-27T08:35:51,698   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-09-27T08:35:51,700   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-09-27T08:35:51,702   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-09-27T08:35:51,704   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-09-27T08:35:51,705   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-09-27T08:35:51,707   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-09-27T08:35:51,708   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-09-27T08:35:51,710   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-09-27T08:35:51,711   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-09-27T08:35:51,713   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-09-27T08:35:51,715   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-09-27T08:35:51,716   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-09-27T08:35:51,718   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-09-27T08:35:51,719   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-09-27T08:35:51,721   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-09-27T08:35:51,722   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-09-27T08:35:51,724   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-09-27T08:35:51,725   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-09-27T08:35:51,727   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-09-27T08:35:51,728   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-09-27T08:35:51,730   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-09-27T08:35:51,731   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-09-27T08:35:51,733   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-09-27T08:35:51,735   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-09-27T08:35:51,736   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-09-27T08:35:51,738   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-09-27T08:35:51,740   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-09-27T08:35:51,742   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-09-27T08:35:51,743   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-09-27T08:35:51,745   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-09-27T08:35:51,747   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-09-27T08:35:51,749   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-09-27T08:35:51,750   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-09-27T08:35:51,752   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-09-27T08:35:51,753   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-09-27T08:35:51,755   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-09-27T08:35:51,757   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-09-27T08:35:51,758   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-09-27T08:35:51,760   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-09-27T08:35:51,761   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-09-27T08:35:51,763   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-09-27T08:35:51,765   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-09-27T08:35:51,766   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-09-27T08:35:51,768   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-09-27T08:35:51,769   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-09-27T08:35:51,771   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-09-27T08:35:51,772   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-09-27T08:35:51,774   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-09-27T08:35:51,776   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-09-27T08:35:51,777   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-09-27T08:35:51,779   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-09-27T08:35:51,781   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-09-27T08:35:51,782   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-09-27T08:35:51,784   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-09-27T08:35:51,785   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-09-27T08:35:51,787   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-09-27T08:35:51,788   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-09-27T08:35:51,790   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-09-27T08:35:51,791   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-09-27T08:35:51,793   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-09-27T08:35:51,794   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-09-27T08:35:51,796   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-09-27T08:35:51,797   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-09-27T08:35:51,799   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-09-27T08:35:51,800   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-09-27T08:35:51,802   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-09-27T08:35:51,804   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-09-27T08:35:51,805   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-09-27T08:35:51,807   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-09-27T08:35:51,808   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-09-27T08:35:51,810   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-09-27T08:35:51,811   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-09-27T08:35:51,813   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-09-27T08:35:51,815   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-09-27T08:35:51,816   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-09-27T08:35:51,818   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-09-27T08:35:51,819   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-09-27T08:35:51,821   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-09-27T08:35:51,822   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-09-27T08:35:51,824   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-09-27T08:35:51,826   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-09-27T08:35:51,827   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-09-27T08:35:51,829   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-09-27T08:35:51,831   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-09-27T08:35:51,832   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-09-27T08:35:51,834   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-09-27T08:35:51,835   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-09-27T08:35:51,837   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-09-27T08:35:51,838   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-09-27T08:35:51,840   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-09-27T08:35:51,841   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-09-27T08:35:51,843   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-09-27T08:35:51,845   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-09-27T08:35:51,846   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-09-27T08:35:51,848   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-09-27T08:35:51,849   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-09-27T08:35:51,851   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-09-27T08:35:51,852   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-09-27T08:35:51,854   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-09-27T08:35:51,855   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-09-27T08:35:51,857   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-09-27T08:35:51,859   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-09-27T08:35:51,860   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-09-27T08:35:51,862   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-09-27T08:35:51,863   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-09-27T08:35:51,865   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-09-27T08:35:51,867   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-09-27T08:35:51,868   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-09-27T08:35:51,870   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-09-27T08:35:51,871   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-09-27T08:35:51,873   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-09-27T08:35:51,875   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-09-27T08:35:51,876   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-09-27T08:35:51,878   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-09-27T08:35:51,879   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-09-27T08:35:51,881   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-09-27T08:35:51,882   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-09-27T08:35:51,884   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-09-27T08:35:51,885   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-09-27T08:35:51,887   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-09-27T08:35:51,888   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-09-27T08:35:51,890   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-09-27T08:35:51,891   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-09-27T08:35:51,893   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-09-27T08:35:51,894   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-09-27T08:35:51,896   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-09-27T08:35:51,898   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-09-27T08:35:51,899   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-09-27T08:35:51,901   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-09-27T08:35:51,903   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-09-27T08:35:51,905   adding 'moleculekit/smallmol/__init__.py'
2023-09-27T08:35:51,910   adding 'moleculekit/smallmol/smallmol.py'
2023-09-27T08:35:51,913   adding 'moleculekit/smallmol/smallmollib.py'
2023-09-27T08:35:51,915   adding 'moleculekit/smallmol/test_smallmol.py'
2023-09-27T08:35:51,917   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-09-27T08:35:51,919   adding 'moleculekit/smallmol/util.py'
2023-09-27T08:35:51,922   adding 'moleculekit/smallmol/tools/__init__.py'
2023-09-27T08:35:51,924   adding 'moleculekit/smallmol/tools/clustering.py'
2023-09-27T08:35:51,926   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-09-27T08:35:51,928   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-09-27T08:35:52,017   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-09-27T08:35:52,028   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-09-27T08:35:52,029   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-09-27T08:35:52,031   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-09-27T08:35:52,049   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-09-27T08:35:52,053   adding 'moleculekit/tools/__init__.py'
2023-09-27T08:35:52,055   adding 'moleculekit/tools/atomtyper.py'
2023-09-27T08:35:52,058   adding 'moleculekit/tools/autosegment.py'
2023-09-27T08:35:52,060   adding 'moleculekit/tools/crystalpacking.py'
2023-09-27T08:35:52,063   adding 'moleculekit/tools/detect.py'
2023-09-27T08:35:52,065   adding 'moleculekit/tools/docking.py'
2023-09-27T08:35:52,067   adding 'moleculekit/tools/graphalignment.py'
2023-09-27T08:35:52,069   adding 'moleculekit/tools/hhblitsprofile.py'
2023-09-27T08:35:52,071   adding 'moleculekit/tools/moleculechecks.py'
2023-09-27T08:35:52,078   adding 'moleculekit/tools/preparation.py'
2023-09-27T08:35:52,081   adding 'moleculekit/tools/preparation_customres.py'
2023-09-27T08:35:52,083   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-09-27T08:35:52,086   adding 'moleculekit/tools/voxeldescriptors.py'
2023-09-27T08:35:52,089   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-09-27T08:35:52,090   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-09-27T08:35:52,178   adding 'moleculekit/wrapping/wrapping.cpp'
2023-09-27T08:35:52,188   adding 'moleculekit/wrapping/wrapping.pyx'
2023-09-27T08:35:52,277   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-09-27T08:35:52,288   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-09-27T08:35:52,290   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-09-27T08:35:52,293   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-09-27T08:35:52,295   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-09-27T08:35:52,296   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-09-27T08:35:52,303   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-09-27T08:35:52,306   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-09-27T08:35:52,308   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-09-27T08:35:52,311   adding 'moleculekit-1.7.8.dist-info/LICENSE'
2023-09-27T08:35:52,312   adding 'moleculekit-1.7.8.dist-info/METADATA'
2023-09-27T08:35:52,314   adding 'moleculekit-1.7.8.dist-info/WHEEL'
2023-09-27T08:35:52,315   adding 'moleculekit-1.7.8.dist-info/top_level.txt'
2023-09-27T08:35:52,320   adding 'moleculekit-1.7.8.dist-info/RECORD'
2023-09-27T08:35:52,480   removing build/bdist.linux-armv7l/wheel
2023-09-27T08:35:52,769   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-09-27T08:35:53,071   Created wheel for moleculekit: filename=moleculekit-1.7.8-cp311-cp311-linux_armv7l.whl size=12837290 sha256=500f0375fc34ca7399c9f2d8ea4c380161c77232e3c0709b50a44f39a771b51f
2023-09-27T08:35:53,072   Stored in directory: /tmp/pip-ephem-wheel-cache-ubaa3cwy/wheels/c6/fc/5e/b42725c790d6f56ba162b7ea0c141cd6e6caa8519098e67c3d
2023-09-27T08:35:53,096 Successfully built moleculekit
2023-09-27T08:35:53,406 Removed build tracker: '/tmp/pip-build-tracker-2d_7hbgr'