2023-09-27T15:28:47,741 Created temporary directory: /tmp/pip-build-tracker-iwzeq8kx 2023-09-27T15:28:47,742 Initialized build tracking at /tmp/pip-build-tracker-iwzeq8kx 2023-09-27T15:28:47,743 Created build tracker: /tmp/pip-build-tracker-iwzeq8kx 2023-09-27T15:28:47,743 Entered build tracker: /tmp/pip-build-tracker-iwzeq8kx 2023-09-27T15:28:47,744 Created temporary directory: /tmp/pip-wheel-9la_tj0d 2023-09-27T15:28:47,747 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_nad6aj 2023-09-27T15:28:47,769 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-27T15:28:47,773 2 location(s) to search for versions of auto-qchem: 2023-09-27T15:28:47,773 * https://pypi.org/simple/auto-qchem/ 2023-09-27T15:28:47,773 * https://www.piwheels.org/simple/auto-qchem/ 2023-09-27T15:28:47,773 Fetching project page and analyzing links: https://pypi.org/simple/auto-qchem/ 2023-09-27T15:28:47,774 Getting page https://pypi.org/simple/auto-qchem/ 2023-09-27T15:28:47,776 Found index url https://pypi.org/simple/ 2023-09-27T15:28:47,993 Fetched page https://pypi.org/simple/auto-qchem/ as application/vnd.pypi.simple.v1+json 2023-09-27T15:28:47,997 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/2d/b0/0cef3aca3442fcc17c899e8a583c711eea04722812355bd6a78c8508609a/auto_qchem-0.1-py3.7.egg (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:47,998 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/fc/1f/973e322b70b1dc076dde578db10bb9d23dc48bbc6c716b166a44ec5b91ba/auto_qchem-0.1.1-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) (requires-python:>3.8.0) 2023-09-27T15:28:47,999 Found link https://files.pythonhosted.org/packages/0d/23/e17728ceb899946dd3bf73d08d2a24e318878450b65473da1b0e263d04db/auto-qchem-1.2.0.tar.gz (from https://pypi.org/simple/auto-qchem/), version: 1.2.0 2023-09-27T15:28:47,999 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/40/fb/218481a970603ea68c85030732a791dc825d32f62265c5b09d742d161a34/auto_qchem-1.2.0-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,000 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/9e/92/d755f0bc6d035dfd1576ae84eed471f62ca3f19722f8fc83a07e17a14fea/auto_qchem-1.2.1-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,000 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/6d/9e/e4a7efd0907a0ec773927f4ce8d77c75bd15c4abac3abce944877116670c/auto_qchem-1.2.2-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,001 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/ed/af/1aa7534006fc7ef322524ed3e5110729b322ec55c285c8670e58a55c33d9/auto_qchem-1.2.3-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,001 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/7a/e7/43ba71581bc2e2ea7822888dc8a01ffa420a4802e9ca4929fbb839774b33/auto_qchem-1.2.4-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,002 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/1c/fc/e80ba1019cd2273fc50d866359e828e92d411b0b6387da8bd9584e826a42/auto_qchem-1.2.5-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,003 Found link https://files.pythonhosted.org/packages/fe/01/32326a12dc360412c5c1b7f14e2ae2e5431cd13880cadff22df83cb09617/auto-qchem-1.2.6.tar.gz (from https://pypi.org/simple/auto-qchem/), version: 1.2.6 2023-09-27T15:28:48,003 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/f8/aa/44b1df54503fb37f212fc5a1b7c810fb064a01e22911c834de7afa8496f4/auto_qchem-1.2.6-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) 2023-09-27T15:28:48,004 Found link https://files.pythonhosted.org/packages/47/b3/de08a9717af5f58ab20d6686989ce2eb625cde8d556b46461386114f7653/auto-qchem-1.3.0.tar.gz (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8), version: 1.3.0 2023-09-27T15:28:48,005 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/9c/cb/e6c328ac83a738a3772d181f8aea939de1105686ad4b6b9d1a24c9182816/auto_qchem-1.3.0-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,006 Found link https://files.pythonhosted.org/packages/7f/82/5fc1a0e1cea86d9cff74f4b54368024220e6c4c7700c1520140ea9b3fb2d/auto-qchem-1.3.1.tar.gz (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8), version: 1.3.1 2023-09-27T15:28:48,006 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/b1/a2/b0be5a25505d9f7c9096fd6bc774961a761f96812c634c69aab7fe1ba3c9/auto_qchem-1.3.1-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,007 Found link https://files.pythonhosted.org/packages/d2/41/57da57d9ac6a9a6a48e8a396ed74088ff7525b1a92f6b13e325c1d59a2d3/auto-qchem-1.3.2.tar.gz (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8), version: 1.3.2 2023-09-27T15:28:48,008 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/04/62/34230511f50a3804cbc53069cf758d317f3832952943807243b1bcfe8945/auto_qchem-1.3.2-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,008 Found link https://files.pythonhosted.org/packages/dc/bc/753854030d671c811bd007d4c3a0070a8467a5b02ed2896acd0bd60868ac/auto-qchem-1.3.3.tar.gz (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8), version: 1.3.3 2023-09-27T15:28:48,009 Skipping link: No binaries permitted for auto-qchem: https://files.pythonhosted.org/packages/7f/70/157eaf298eabf2dfc22713d8b7c58057fcdc2837c0fb7b6fd2c024c38aae/auto_qchem-1.3.3-py3-none-any.whl (from https://pypi.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,010 Fetching project page and analyzing links: https://www.piwheels.org/simple/auto-qchem/ 2023-09-27T15:28:48,010 Getting page https://www.piwheels.org/simple/auto-qchem/ 2023-09-27T15:28:48,012 Found index url https://www.piwheels.org/simple/ 2023-09-27T15:28:48,169 Fetched page https://www.piwheels.org/simple/auto-qchem/ as text/html 2023-09-27T15:28:48,171 Skipping link: No binaries permitted for auto-qchem: https://www.piwheels.org/simple/auto-qchem/auto_qchem-1.3.2-py3-none-any.whl#sha256=4cc5c47b99499f73965b5c44ffab380d37ef1f46593cfcc54ae2547dcd45a834 (from https://www.piwheels.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,172 Skipping link: No binaries permitted for auto-qchem: https://www.piwheels.org/simple/auto-qchem/auto_qchem-1.3.1-py3-none-any.whl#sha256=0740d5ae880716570218099fdddf4d8ef131091672fe00c2ea4627adae9e1133 (from https://www.piwheels.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,172 Skipping link: No binaries permitted for auto-qchem: https://www.piwheels.org/simple/auto-qchem/auto_qchem-1.3.0-py3-none-any.whl#sha256=0f1a6106801eef52adaff86545a61dab80581ac1c593b391dc2695bfbc677187 (from https://www.piwheels.org/simple/auto-qchem/) (requires-python:>=3.8) 2023-09-27T15:28:48,173 Skipping link: No binaries permitted for auto-qchem: https://www.piwheels.org/simple/auto-qchem/auto_qchem-1.2.6-py3-none-any.whl#sha256=fcc916fa6579202295a94cdac83fdcec6926809aa871de0d8b1c9a4390849344 (from https://www.piwheels.org/simple/auto-qchem/) 2023-09-27T15:28:48,173 Skipping link: No binaries permitted for auto-qchem: https://www.piwheels.org/simple/auto-qchem/auto_qchem-1.2.0-py3-none-any.whl#sha256=a88d7cf6441ba89e34e0aca3dab8621e4fb02bb94f3560b10514886990be9f54 (from https://www.piwheels.org/simple/auto-qchem/) 2023-09-27T15:28:48,174 Skipping link: not a file: https://www.piwheels.org/simple/auto-qchem/ 2023-09-27T15:28:48,175 Skipping link: not a file: https://pypi.org/simple/auto-qchem/ 2023-09-27T15:28:48,194 Given no hashes to check 1 links for project 'auto-qchem': discarding no candidates 2023-09-27T15:28:48,212 Collecting auto-qchem==1.3.3 2023-09-27T15:28:48,214 Created temporary directory: /tmp/pip-unpack-f5qglcg5 2023-09-27T15:28:48,433 Downloading auto-qchem-1.3.3.tar.gz (42 kB) 2023-09-27T15:28:48,519 Added auto-qchem==1.3.3 from https://files.pythonhosted.org/packages/dc/bc/753854030d671c811bd007d4c3a0070a8467a5b02ed2896acd0bd60868ac/auto-qchem-1.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-iwzeq8kx' 2023-09-27T15:28:48,520 Running setup.py (path:/tmp/pip-wheel-9la_tj0d/auto-qchem_36cc04eb4bd84fe78dbfdd6c9b4516ec/setup.py) egg_info for package auto-qchem 2023-09-27T15:28:48,521 Created temporary directory: /tmp/pip-pip-egg-info-i51yhd4r 2023-09-27T15:28:48,521 Preparing metadata (setup.py): started 2023-09-27T15:28:48,523 Running command python setup.py egg_info 2023-09-27T15:28:49,506 running egg_info 2023-09-27T15:28:49,507 creating /tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info 2023-09-27T15:28:49,531 writing /tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/PKG-INFO 2023-09-27T15:28:49,534 writing dependency_links to /tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/dependency_links.txt 2023-09-27T15:28:49,536 writing requirements to /tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/requires.txt 2023-09-27T15:28:49,537 writing top-level names to /tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/top_level.txt 2023-09-27T15:28:49,538 writing manifest file '/tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/SOURCES.txt' 2023-09-27T15:28:49,613 reading manifest file '/tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/SOURCES.txt' 2023-09-27T15:28:49,614 adding license file 'LICENSE.md' 2023-09-27T15:28:49,616 writing manifest file '/tmp/pip-pip-egg-info-i51yhd4r/auto_qchem.egg-info/SOURCES.txt' 2023-09-27T15:28:49,725 Preparing metadata (setup.py): finished with status 'done' 2023-09-27T15:28:49,728 Source in /tmp/pip-wheel-9la_tj0d/auto-qchem_36cc04eb4bd84fe78dbfdd6c9b4516ec has version 1.3.3, which satisfies requirement auto-qchem==1.3.3 from https://files.pythonhosted.org/packages/dc/bc/753854030d671c811bd007d4c3a0070a8467a5b02ed2896acd0bd60868ac/auto-qchem-1.3.3.tar.gz 2023-09-27T15:28:49,729 Removed auto-qchem==1.3.3 from https://files.pythonhosted.org/packages/dc/bc/753854030d671c811bd007d4c3a0070a8467a5b02ed2896acd0bd60868ac/auto-qchem-1.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-iwzeq8kx' 2023-09-27T15:28:49,735 Created temporary directory: /tmp/pip-unpack-148bpses 2023-09-27T15:28:49,736 Created temporary directory: /tmp/pip-unpack-lbm2qo3d 2023-09-27T15:28:49,757 Building wheels for collected packages: auto-qchem 2023-09-27T15:28:49,761 Created temporary directory: /tmp/pip-wheel-4g62jfy8 2023-09-27T15:28:49,762 Building wheel for auto-qchem (setup.py): started 2023-09-27T15:28:49,763 Destination directory: /tmp/pip-wheel-4g62jfy8 2023-09-27T15:28:49,763 Running command python setup.py bdist_wheel 2023-09-27T15:28:50,782 running bdist_wheel 2023-09-27T15:28:50,876 running build 2023-09-27T15:28:50,877 running build_py 2023-09-27T15:28:50,904 creating build 2023-09-27T15:28:50,904 creating build/lib 2023-09-27T15:28:50,905 creating build/lib/autoqchem 2023-09-27T15:28:50,906 copying autoqchem/gaussian_input_generator.py -> build/lib/autoqchem 2023-09-27T15:28:50,909 copying autoqchem/gaussian_log_extractor.py -> build/lib/autoqchem 2023-09-27T15:28:50,911 copying autoqchem/helper_classes.py -> build/lib/autoqchem 2023-09-27T15:28:50,914 copying autoqchem/openbabel_utils.py -> build/lib/autoqchem 2023-09-27T15:28:50,915 copying autoqchem/__init__.py -> build/lib/autoqchem 2023-09-27T15:28:50,917 copying autoqchem/slurm_manager.py -> build/lib/autoqchem 2023-09-27T15:28:50,920 copying autoqchem/test.py -> build/lib/autoqchem 2023-09-27T15:28:50,922 copying autoqchem/molecule.py -> build/lib/autoqchem 2023-09-27T15:28:50,923 copying autoqchem/draw_utils.py -> build/lib/autoqchem 2023-09-27T15:28:50,925 copying autoqchem/helper_functions.py -> build/lib/autoqchem 2023-09-27T15:28:50,927 copying autoqchem/sge_manager.py -> build/lib/autoqchem 2023-09-27T15:28:50,930 copying autoqchem/descriptor_functions.py -> build/lib/autoqchem 2023-09-27T15:28:50,932 copying autoqchem/db_functions.py -> build/lib/autoqchem 2023-09-27T15:28:50,934 copying autoqchem/rdkit_utils.py -> build/lib/autoqchem 2023-09-27T15:28:50,962 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-27T15:28:50,963 !! 2023-09-27T15:28:50,964 ******************************************************************************** 2023-09-27T15:28:50,964 Please avoid running ``setup.py`` directly. 2023-09-27T15:28:50,965 Instead, use pypa/build, pypa/installer or other 2023-09-27T15:28:50,965 standards-based tools. 2023-09-27T15:28:50,966 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-27T15:28:50,966 ******************************************************************************** 2023-09-27T15:28:50,967 !! 2023-09-27T15:28:50,968 self.initialize_options() 2023-09-27T15:28:50,986 installing to build/bdist.linux-armv7l/wheel 2023-09-27T15:28:50,987 running install 2023-09-27T15:28:51,010 running install_lib 2023-09-27T15:28:51,034 creating build/bdist.linux-armv7l 2023-09-27T15:28:51,035 creating build/bdist.linux-armv7l/wheel 2023-09-27T15:28:51,036 creating build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,037 copying build/lib/autoqchem/gaussian_input_generator.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,040 copying build/lib/autoqchem/gaussian_log_extractor.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,042 copying build/lib/autoqchem/helper_classes.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,045 copying build/lib/autoqchem/openbabel_utils.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,047 copying build/lib/autoqchem/__init__.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,048 copying build/lib/autoqchem/slurm_manager.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,051 copying build/lib/autoqchem/test.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,052 copying build/lib/autoqchem/molecule.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,055 copying build/lib/autoqchem/draw_utils.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,056 copying build/lib/autoqchem/helper_functions.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,059 copying build/lib/autoqchem/sge_manager.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,061 copying build/lib/autoqchem/descriptor_functions.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,063 copying build/lib/autoqchem/db_functions.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,066 copying build/lib/autoqchem/rdkit_utils.py -> build/bdist.linux-armv7l/wheel/autoqchem 2023-09-27T15:28:51,068 running install_data 2023-09-27T15:28:51,093 creating build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3.data 2023-09-27T15:28:51,093 creating build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3.data/data 2023-09-27T15:28:51,094 warning: install_data: setup script did not provide a directory for 'config.yml' -- installing right in 'build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3.data/data' 2023-09-27T15:28:51,095 copying config.yml -> build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3.data/data 2023-09-27T15:28:51,097 running install_egg_info 2023-09-27T15:28:51,155 running egg_info 2023-09-27T15:28:51,178 writing auto_qchem.egg-info/PKG-INFO 2023-09-27T15:28:51,181 writing dependency_links to auto_qchem.egg-info/dependency_links.txt 2023-09-27T15:28:51,183 writing requirements to auto_qchem.egg-info/requires.txt 2023-09-27T15:28:51,184 writing top-level names to auto_qchem.egg-info/top_level.txt 2023-09-27T15:28:51,210 reading manifest file 'auto_qchem.egg-info/SOURCES.txt' 2023-09-27T15:28:51,213 adding license file 'LICENSE.md' 2023-09-27T15:28:51,215 writing manifest file 'auto_qchem.egg-info/SOURCES.txt' 2023-09-27T15:28:51,216 Copying auto_qchem.egg-info to build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3-py3.11.egg-info 2023-09-27T15:28:51,225 running install_scripts 2023-09-27T15:28:51,242 creating build/bdist.linux-armv7l/wheel/auto_qchem-1.3.3.dist-info/WHEEL 2023-09-27T15:28:51,244 creating '/tmp/pip-wheel-4g62jfy8/auto_qchem-1.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-27T15:28:51,247 adding 'auto_qchem-1.3.3.data/data/config.yml' 2023-09-27T15:28:51,249 adding 'autoqchem/__init__.py' 2023-09-27T15:28:51,252 adding 'autoqchem/db_functions.py' 2023-09-27T15:28:51,254 adding 'autoqchem/descriptor_functions.py' 2023-09-27T15:28:51,255 adding 'autoqchem/draw_utils.py' 2023-09-27T15:28:51,257 adding 'autoqchem/gaussian_input_generator.py' 2023-09-27T15:28:51,259 adding 'autoqchem/gaussian_log_extractor.py' 2023-09-27T15:28:51,261 adding 'autoqchem/helper_classes.py' 2023-09-27T15:28:51,262 adding 'autoqchem/helper_functions.py' 2023-09-27T15:28:51,264 adding 'autoqchem/molecule.py' 2023-09-27T15:28:51,265 adding 'autoqchem/openbabel_utils.py' 2023-09-27T15:28:51,267 adding 'autoqchem/rdkit_utils.py' 2023-09-27T15:28:51,270 adding 'autoqchem/sge_manager.py' 2023-09-27T15:28:51,274 adding 'autoqchem/slurm_manager.py' 2023-09-27T15:28:51,275 adding 'autoqchem/test.py' 2023-09-27T15:28:51,281 adding 'auto_qchem-1.3.3.dist-info/LICENSE.md' 2023-09-27T15:28:51,282 adding 'auto_qchem-1.3.3.dist-info/METADATA' 2023-09-27T15:28:51,283 adding 'auto_qchem-1.3.3.dist-info/WHEEL' 2023-09-27T15:28:51,284 adding 'auto_qchem-1.3.3.dist-info/top_level.txt' 2023-09-27T15:28:51,285 adding 'auto_qchem-1.3.3.dist-info/RECORD' 2023-09-27T15:28:51,287 removing build/bdist.linux-armv7l/wheel 2023-09-27T15:28:51,404 Building wheel for auto-qchem (setup.py): finished with status 'done' 2023-09-27T15:28:51,407 Created wheel for auto-qchem: filename=auto_qchem-1.3.3-py3-none-any.whl size=53275 sha256=9c746779f7e765b7f99b5558ac259ba85bdb7fdd557bdb8374902f5359fc1cbc 2023-09-27T15:28:51,408 Stored in directory: /tmp/pip-ephem-wheel-cache-s_nad6aj/wheels/34/5d/34/5bc37ed9c1513104a4d969855f150a02574ee31c71aa928313 2023-09-27T15:28:51,418 Successfully built auto-qchem 2023-09-27T15:28:51,423 Removed build tracker: '/tmp/pip-build-tracker-iwzeq8kx'