2023-09-28T01:58:01,535 Created temporary directory: /tmp/pip-build-tracker-3gg5utgr
2023-09-28T01:58:01,536 Initialized build tracking at /tmp/pip-build-tracker-3gg5utgr
2023-09-28T01:58:01,537 Created build tracker: /tmp/pip-build-tracker-3gg5utgr
2023-09-28T01:58:01,537 Entered build tracker: /tmp/pip-build-tracker-3gg5utgr
2023-09-28T01:58:01,538 Created temporary directory: /tmp/pip-wheel-9j13bxck
2023-09-28T01:58:01,541 Created temporary directory: /tmp/pip-ephem-wheel-cache-7nmoeqsy
2023-09-28T01:58:01,564 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-28T01:58:01,568 2 location(s) to search for versions of metawibele:
2023-09-28T01:58:01,568 * https://pypi.org/simple/metawibele/
2023-09-28T01:58:01,568 * https://www.piwheels.org/simple/metawibele/
2023-09-28T01:58:01,569 Fetching project page and analyzing links: https://pypi.org/simple/metawibele/
2023-09-28T01:58:01,570 Getting page https://pypi.org/simple/metawibele/
2023-09-28T01:58:01,571 Found index url https://pypi.org/simple/
2023-09-28T01:58:01,824 Fetched page https://pypi.org/simple/metawibele/ as application/vnd.pypi.simple.v1+json
2023-09-28T01:58:01,827   Found link https://files.pythonhosted.org/packages/63/dd/f7fdaebfa37a66521ba36f5cba08d441ef0517891897cbaedd4dc65c23c5/metawibele-0.3.5.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.5
2023-09-28T01:58:01,828   Found link https://files.pythonhosted.org/packages/c8/13/b19f1456a883f66cbe84a9994809a7b474c95920e502ab105b350d4a0d76/metawibele-0.3.6.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.6
2023-09-28T01:58:01,829   Found link https://files.pythonhosted.org/packages/7c/19/af84f2863d296edd894ff917a516fabb124e1921b4ca6d5bc9fa0fffb969/metawibele-0.3.7.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.7
2023-09-28T01:58:01,829   Found link https://files.pythonhosted.org/packages/c4/35/1d22d02f5576d1aa6f5e8c82ad8ff231d9e1364c56e10554cff9dab80dc0/metawibele-0.3.8.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.8
2023-09-28T01:58:01,830   Found link https://files.pythonhosted.org/packages/18/0d/c428068b3d096abb30df35c000895ae8738330312be3155e98c22b699b5c/metawibele-0.3.8.1.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.8.1
2023-09-28T01:58:01,831   Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/ab/ce/00f6b75e334842a289899dab3b4f82f76617682dc84dcc369968f01ce1d3/metawibele-0.4.2-py3-none-any.whl (from https://pypi.org/simple/metawibele/)
2023-09-28T01:58:01,831   Found link https://files.pythonhosted.org/packages/08/0f/c88b89605f54653cb844b33a11db8f28062784f4c6fb239f6f453160c6e1/metawibele-0.4.2.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.2
2023-09-28T01:58:01,832   Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/90/ab/12be30a49002f83196d21e5c4bdce8b4225174dc35c61292443ebd5214c8/metawibele-0.4.4-py3-none-any.whl (from https://pypi.org/simple/metawibele/)
2023-09-28T01:58:01,833   Found link https://files.pythonhosted.org/packages/ec/b5/1d91e306ea9b2cce23ecfb0ab29492bce93756858f3004e60483fa44878e/metawibele-0.4.4.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.4
2023-09-28T01:58:01,833   Found link https://files.pythonhosted.org/packages/83/b0/18a6cced507457a008ccedbec22807ce62887da2581ad8403bdd5079a484/metawibele-0.4.5.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.5
2023-09-28T01:58:01,834   Found link https://files.pythonhosted.org/packages/5f/f5/aac1f006fc6d06d2cceef10c7aede2ba6828bb96ee60bceb38a84e10e2de/metawibele-0.4.6.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.6
2023-09-28T01:58:01,835   Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/8e/44/f33130ae796e4a664c2197062f4e7fda577891048222495d9dad2a78cafa/metawibele-0.4.7-py3-none-any.whl (from https://pypi.org/simple/metawibele/)
2023-09-28T01:58:01,835   Found link https://files.pythonhosted.org/packages/0b/f5/b7548bebec150d5ed1c37c57843f51f3639bee26f52ae1f2d34b8ed3a385/metawibele-0.4.7.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.7
2023-09-28T01:58:01,836 Fetching project page and analyzing links: https://www.piwheels.org/simple/metawibele/
2023-09-28T01:58:01,838 Getting page https://www.piwheels.org/simple/metawibele/
2023-09-28T01:58:01,839 Found index url https://www.piwheels.org/simple/
2023-09-28T01:58:01,996 Fetched page https://www.piwheels.org/simple/metawibele/ as text/html
2023-09-28T01:58:01,999   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.6-py3-none-any.whl#sha256=1b853ed409b64c768283a8f5bd89542b801903c13dc7a2ff58987f55290fbb96 (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,000   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.5-py3-none-any.whl#sha256=10f643bf273369d90945c26493c25e40502703122fa41c0085b8b1e465918e03 (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,000   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.4-py3-none-any.whl#sha256=5885c288c7e5e51195aa1a8047d469baf52a37367f9fb2e8ce96c93d0d678ddd (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,001   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.2-py3-none-any.whl#sha256=d4a783aa655cb02ed40fe46ee54ced29e34fe8b5fe7e61339dfaf8174cd6153b (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,001   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.8.1-py3-none-any.whl#sha256=3aec339ab17bf253203dd089f09472a4097c2eef98937a16ded9023b196f757c (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,001   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.8-py3-none-any.whl#sha256=24bd645d52d57f0b4c26fbb00aef3c88337c65a659c6446727dfbe72fc6447ac (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,002   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.7-py3-none-any.whl#sha256=b56669f31a78a05ed5401ac62e468a48e63ecc63dc4931cf2a55c3b6987a50ad (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,002   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.6-py3-none-any.whl#sha256=03b55d9f46bd54f37123113aea5c00299a9ed72cc564bd0638ffd79634f31927 (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,003   Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.5-py3-none-any.whl#sha256=095d16bf0df2c8f7e8bc1a2f938b4ecc0f3a0fa8cf1b45726e57058fec015503 (from https://www.piwheels.org/simple/metawibele/)
2023-09-28T01:58:02,003 Skipping link: not a file: https://www.piwheels.org/simple/metawibele/
2023-09-28T01:58:02,004 Skipping link: not a file: https://pypi.org/simple/metawibele/
2023-09-28T01:58:02,023 Given no hashes to check 1 links for project 'metawibele': discarding no candidates
2023-09-28T01:58:02,041 Collecting metawibele==0.4.7
2023-09-28T01:58:02,043   Created temporary directory: /tmp/pip-unpack-zbuz25kp
2023-09-28T01:58:02,716   Downloading metawibele-0.4.7.tar.gz (89.5 MB)
2023-09-28T01:58:26,487   Added metawibele==0.4.7 from https://files.pythonhosted.org/packages/0b/f5/b7548bebec150d5ed1c37c57843f51f3639bee26f52ae1f2d34b8ed3a385/metawibele-0.4.7.tar.gz to build tracker '/tmp/pip-build-tracker-3gg5utgr'
2023-09-28T01:58:26,489   Running setup.py (path:/tmp/pip-wheel-9j13bxck/metawibele_336584ebd1ce49de8a4cc4f4b6f821e1/setup.py) egg_info for package metawibele
2023-09-28T01:58:26,490   Created temporary directory: /tmp/pip-pip-egg-info-ltqtne4j
2023-09-28T01:58:26,491   Preparing metadata (setup.py): started
2023-09-28T01:58:26,492   Running command python setup.py egg_info
2023-09-28T01:58:27,557   running egg_info
2023-09-28T01:58:27,558   creating /tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info
2023-09-28T01:58:27,584   writing /tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/PKG-INFO
2023-09-28T01:58:27,588   writing dependency_links to /tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/dependency_links.txt
2023-09-28T01:58:27,592   writing entry points to /tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/entry_points.txt
2023-09-28T01:58:27,594   writing top-level names to /tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/top_level.txt
2023-09-28T01:58:27,596   writing manifest file '/tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/SOURCES.txt'
2023-09-28T01:58:27,715   reading manifest file '/tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/SOURCES.txt'
2023-09-28T01:58:27,717   reading manifest template 'MANIFEST.in'
2023-09-28T01:58:27,718   warning: no files found matching 'readme.md'
2023-09-28T01:58:27,735   adding license file 'LICENSE'
2023-09-28T01:58:27,741   writing manifest file '/tmp/pip-pip-egg-info-ltqtne4j/metawibele.egg-info/SOURCES.txt'
2023-09-28T01:58:27,857   Preparing metadata (setup.py): finished with status 'done'
2023-09-28T01:58:27,860   Source in /tmp/pip-wheel-9j13bxck/metawibele_336584ebd1ce49de8a4cc4f4b6f821e1 has version 0.4.7, which satisfies requirement metawibele==0.4.7 from https://files.pythonhosted.org/packages/0b/f5/b7548bebec150d5ed1c37c57843f51f3639bee26f52ae1f2d34b8ed3a385/metawibele-0.4.7.tar.gz
2023-09-28T01:58:27,861   Removed metawibele==0.4.7 from https://files.pythonhosted.org/packages/0b/f5/b7548bebec150d5ed1c37c57843f51f3639bee26f52ae1f2d34b8ed3a385/metawibele-0.4.7.tar.gz from build tracker '/tmp/pip-build-tracker-3gg5utgr'
2023-09-28T01:58:27,865 Created temporary directory: /tmp/pip-unpack-xj54jh44
2023-09-28T01:58:27,866 Created temporary directory: /tmp/pip-unpack-35ngyv9h
2023-09-28T01:58:27,869 Building wheels for collected packages: metawibele
2023-09-28T01:58:27,873   Created temporary directory: /tmp/pip-wheel-y8813rec
2023-09-28T01:58:27,873   Building wheel for metawibele (setup.py): started
2023-09-28T01:58:27,875   Destination directory: /tmp/pip-wheel-y8813rec
2023-09-28T01:58:27,875   Running command python setup.py bdist_wheel
2023-09-28T01:58:28,889   running bdist_wheel
2023-09-28T01:58:28,990   running build
2023-09-28T01:58:28,991   running build_py
2023-09-28T01:58:29,023   creating build
2023-09-28T01:58:29,024   creating build/lib
2023-09-28T01:58:29,024   creating build/lib/metawibele
2023-09-28T01:58:29,025   copying metawibele/config.py -> build/lib/metawibele
2023-09-28T01:58:29,028   copying metawibele/check.py -> build/lib/metawibele
2023-09-28T01:58:29,030   copying metawibele/metawibele.py -> build/lib/metawibele
2023-09-28T01:58:29,032   copying metawibele/utilities.py -> build/lib/metawibele
2023-09-28T01:58:29,034   copying metawibele/__init__.py -> build/lib/metawibele
2023-09-28T01:58:29,036   creating build/lib/metawibele/tools
2023-09-28T01:58:29,037   copying metawibele/tools/extract_complete_ORF_seq.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,039   copying metawibele/tools/extract_non_redundance_seq.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,041   copying metawibele/tools/preprocessing_tasks.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,044   copying metawibele/tools/extract_cluster_CD_hit.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,046   copying metawibele/tools/combine_gene_sequences.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,048   copying metawibele/tools/gene_abundance.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,050   copying metawibele/tools/format_contig_sequences.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,052   copying metawibele/tools/extract_protein_coding_genes.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,054   copying metawibele/tools/__init__.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,055   copying metawibele/tools/format_protein_sequences.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,057   copying metawibele/tools/gene_abundance_indexRef.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,059   copying metawibele/tools/gene_catalog_abundance.py -> build/lib/metawibele/tools
2023-09-28T01:58:29,062   creating build/lib/metawibele/prioritize
2023-09-28T01:58:29,062   copying metawibele/prioritize/quantify_prioritization.py -> build/lib/metawibele/prioritize
2023-09-28T01:58:29,065   copying metawibele/prioritize/filter_prioritization.py -> build/lib/metawibele/prioritize
2023-09-28T01:58:29,067   copying metawibele/prioritize/__init__.py -> build/lib/metawibele/prioritize
2023-09-28T01:58:29,068   copying metawibele/prioritize/finalize_prioritization.py -> build/lib/metawibele/prioritize
2023-09-28T01:58:29,071   creating build/lib/metawibele/common
2023-09-28T01:58:29,072   copying metawibele/common/transpose.py -> build/lib/metawibele/common
2023-09-28T01:58:29,074   copying metawibele/common/check_install.py -> build/lib/metawibele/common
2023-09-28T01:58:29,076   copying metawibele/common/download_database.py -> build/lib/metawibele/common
2023-09-28T01:58:29,078   copying metawibele/common/extract_uniprot_pfam.py -> build/lib/metawibele/common
2023-09-28T01:58:29,080   copying metawibele/common/filter_clusters.py -> build/lib/metawibele/common
2023-09-28T01:58:29,082   copying metawibele/common/abundance_normalization.py -> build/lib/metawibele/common
2023-09-28T01:58:29,084   copying metawibele/common/abundance_filtering.py -> build/lib/metawibele/common
2023-09-28T01:58:29,086   copying metawibele/common/extract_abundance_feature_subset.py -> build/lib/metawibele/common
2023-09-28T01:58:29,088   copying metawibele/common/join_family_abundance.py -> build/lib/metawibele/common
2023-09-28T01:58:29,089   copying metawibele/common/extract_abundance_sample_subset.py -> build/lib/metawibele/common
2023-09-28T01:58:29,091   copying metawibele/common/download_config_file.py -> build/lib/metawibele/common
2023-09-28T01:58:29,093   copying metawibele/common/split_family_abundance.py -> build/lib/metawibele/common
2023-09-28T01:58:29,095   copying metawibele/common/prepare_domain_databases.py -> build/lib/metawibele/common
2023-09-28T01:58:29,097   copying metawibele/common/utils.py -> build/lib/metawibele/common
2023-09-28T01:58:29,099   copying metawibele/common/prepare_uniprot_annotation.py -> build/lib/metawibele/common
2023-09-28T01:58:29,101   copying metawibele/common/abundance_smoothing.py -> build/lib/metawibele/common
2023-09-28T01:58:29,104   copying metawibele/common/combine_abundance_annotation.py -> build/lib/metawibele/common
2023-09-28T01:58:29,106   copying metawibele/common/__init__.py -> build/lib/metawibele/common
2023-09-28T01:58:29,107   copying metawibele/common/filter_prevalence.py -> build/lib/metawibele/common
2023-09-28T01:58:29,109   copying metawibele/common/prepare_uniref_annotation.py -> build/lib/metawibele/common
2023-09-28T01:58:29,111   copying metawibele/common/split_fasta_file.py -> build/lib/metawibele/common
2023-09-28T01:58:29,113   copying metawibele/common/abundance_RPK.py -> build/lib/metawibele/common
2023-09-28T01:58:29,115   copying metawibele/common/prepare_uniprot_taxonomy.py -> build/lib/metawibele/common
2023-09-28T01:58:29,118   creating build/lib/metawibele/characterize
2023-09-28T01:58:29,119   copying metawibele/characterize/interproscan_tmhmm_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,121   copying metawibele/characterize/maaslin2_collection.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,123   copying metawibele/characterize/mspminer_msp_taxonomy_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,126   copying metawibele/characterize/interproscan_protein.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,128   copying metawibele/characterize/summary_function_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,131   copying metawibele/characterize/uniref_protein.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,133   copying metawibele/characterize/summary_all_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,135   copying metawibele/characterize/maaslin2.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,137   copying metawibele/characterize/maaslin2_summary.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,139   copying metawibele/characterize/interproscan_pfam_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,142   copying metawibele/characterize/abundance_annotator.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,143   copying metawibele/characterize/msp_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,145   copying metawibele/characterize/denovo_TM_SP.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,147   copying metawibele/characterize/interproscan_phobius_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,149   copying metawibele/characterize/psortb_protein.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,152   copying metawibele/characterize/interproscan_signalp_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,154   copying metawibele/characterize/mspminer_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,156   copying metawibele/characterize/psortb_annotator.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,158   copying metawibele/characterize/sum_to_protein_family_abundance.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,160   copying metawibele/characterize/ddi_DOMINE_ann.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,162   copying metawibele/characterize/uniref_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,164   copying metawibele/characterize/interproscan_annotator.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,166   copying metawibele/characterize/psortb_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,168   copying metawibele/characterize/finalize_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,170   copying metawibele/characterize/mspminer_msp_uniref_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,172   copying metawibele/characterize/ddi_DOMINE_ExpAtlas.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,174   copying metawibele/characterize/ddi_DOMINE_protein.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,176   copying metawibele/characterize/pfam2go.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,179   copying metawibele/characterize/summary_protein_uniref_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,181   copying metawibele/characterize/interproscan_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,183   copying metawibele/characterize/utils.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,186   copying metawibele/characterize/maaslin2_annotator.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,187   copying metawibele/characterize/summary_protein_family_uniref_annotation.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,190   copying metawibele/characterize/mspminer_protein_family_taxonomy.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,192   copying metawibele/characterize/metadata_format.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,194   copying metawibele/characterize/mspminer_msp.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,196   copying metawibele/characterize/mspminer_protein.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,198   copying metawibele/characterize/ddi_DOMINE_protein_family.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,200   copying metawibele/characterize/__init__.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,201   copying metawibele/characterize/uniref_annotator.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,203   copying metawibele/characterize/uniref_annotator_stat.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,205   copying metawibele/characterize/ddi_DOMINE_SIFTS.py -> build/lib/metawibele/characterize
2023-09-28T01:58:29,208   creating build/lib/metawibele/tasks
2023-09-28T01:58:29,209   copying metawibele/tasks/characterization.py -> build/lib/metawibele/tasks
2023-09-28T01:58:29,212   copying metawibele/tasks/prioritization.py -> build/lib/metawibele/tasks
2023-09-28T01:58:29,214   copying metawibele/tasks/__init__.py -> build/lib/metawibele/tasks
2023-09-28T01:58:29,220   creating build/lib/metawibele/workflows
2023-09-28T01:58:29,220   copying metawibele/workflows/prioritize.py -> build/lib/metawibele/workflows
2023-09-28T01:58:29,223   copying metawibele/workflows/characterize.py -> build/lib/metawibele/workflows
2023-09-28T01:58:29,226   copying metawibele/workflows/preprocess.py -> build/lib/metawibele/workflows
2023-09-28T01:58:29,228   creating build/lib/metawibele/configs
2023-09-28T01:58:29,229   copying metawibele/configs/metawibele.cfg -> build/lib/metawibele/configs
2023-09-28T01:58:29,231   copying metawibele/configs/MSPminer_setting.cfg -> build/lib/metawibele/configs
2023-09-28T01:58:29,233   copying metawibele/configs/prioritization.cfg -> build/lib/metawibele/configs
2023-09-28T01:58:29,235   copying metawibele/configs/characterization.cfg -> build/lib/metawibele/configs
2023-09-28T01:58:29,238   creating build/lib/metawibele/data
2023-09-28T01:58:29,238   creating build/lib/metawibele/data/domain
2023-09-28T01:58:29,239   copying metawibele/data/domain/INTERACTION.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,244   copying metawibele/data/domain/FANTOM5_colon_rectum.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,248   copying metawibele/data/domain/pdb_chain_pfam.tsv.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,285   copying metawibele/data/domain/Encode_sigmoid_colon.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,289   copying metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,294   copying metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,300   copying metawibele/data/domain/gene_ontology.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,304   copying metawibele/data/domain/Illumina_Body_Map_colon.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,308   copying metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,311   copying metawibele/data/domain/README.txt -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,313   copying metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,317   copying metawibele/data/domain/pdb_chain_taxonomy.tsv.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,718   copying metawibele/data/domain/pfam_descriptions.txt.gz -> build/lib/metawibele/data/domain
2023-09-28T01:58:29,725   creating build/lib/metawibele/data/uniref
2023-09-28T01:58:29,726   copying metawibele/data/uniref/map_TaxID_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:29,795   copying metawibele/data/uniref/uniref90.demo.fasta.dmnd -> build/lib/metawibele/data/uniref
2023-09-28T01:58:29,807   copying metawibele/data/uniref/uniprot_taxonomy.tsv.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,453   copying metawibele/data/uniref/uniprot_taxaID_microbiome.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,482   copying metawibele/data/uniref/uniprot_taxaID_mammalia.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,485   copying metawibele/data/uniref/uniprot_human_pfam.tsv.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,519   copying metawibele/data/uniref/map_Rep_TaxID_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,555   copying metawibele/data/uniref/README.txt -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,557   copying metawibele/data/uniref/map_Tax_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,624   copying metawibele/data/uniref/map_Rep_Tax_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref
2023-09-28T01:58:30,653   creating build/lib/metawibele/data/misc
2023-09-28T01:58:30,654   copying metawibele/data/misc/vignette_function.tsv -> build/lib/metawibele/data/misc
2023-09-28T01:58:30,656   creating build/lib/metawibele/Rscripts
2023-09-28T01:58:30,657   copying metawibele/Rscripts/pcl_utils.R -> build/lib/metawibele/Rscripts
2023-09-28T01:58:30,661   copying metawibele/Rscripts/maaslin2_utils.R -> build/lib/metawibele/Rscripts
2023-09-28T01:58:30,668   running build_scripts
2023-09-28T01:58:30,669   creating build/scripts-3.11
2023-09-28T01:58:30,669   copying and adjusting metawibele/workflows/prioritize.py -> build/scripts-3.11
2023-09-28T01:58:30,672   copying and adjusting metawibele/workflows/characterize.py -> build/scripts-3.11
2023-09-28T01:58:30,675   copying and adjusting metawibele/workflows/preprocess.py -> build/scripts-3.11
2023-09-28T01:58:30,676   changing mode of build/scripts-3.11/prioritize.py from 644 to 755
2023-09-28T01:58:30,677   changing mode of build/scripts-3.11/characterize.py from 644 to 755
2023-09-28T01:58:30,677   changing mode of build/scripts-3.11/preprocess.py from 644 to 755
2023-09-28T01:58:30,704   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-28T01:58:30,704   !!

2023-09-28T01:58:30,705           ********************************************************************************
2023-09-28T01:58:30,706           Please avoid running ``setup.py`` directly.
2023-09-28T01:58:30,706           Instead, use pypa/build, pypa/installer or other
2023-09-28T01:58:30,707           standards-based tools.

2023-09-28T01:58:30,708           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-28T01:58:30,709           ********************************************************************************

2023-09-28T01:58:30,710   !!
2023-09-28T01:58:30,710     self.initialize_options()
2023-09-28T01:58:30,732   installing to build/bdist.linux-armv7l/wheel
2023-09-28T01:58:30,732   running install
2023-09-28T01:58:30,756   running install_lib
2023-09-28T01:58:30,783   creating build/bdist.linux-armv7l
2023-09-28T01:58:30,783   creating build/bdist.linux-armv7l/wheel
2023-09-28T01:58:30,785   creating build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:30,786   creating build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,787   copying build/lib/metawibele/tools/extract_complete_ORF_seq.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,789   copying build/lib/metawibele/tools/extract_non_redundance_seq.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,791   copying build/lib/metawibele/tools/preprocessing_tasks.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,794   copying build/lib/metawibele/tools/extract_cluster_CD_hit.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,796   copying build/lib/metawibele/tools/combine_gene_sequences.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,798   copying build/lib/metawibele/tools/gene_abundance.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,801   copying build/lib/metawibele/tools/format_contig_sequences.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,802   copying build/lib/metawibele/tools/extract_protein_coding_genes.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,804   copying build/lib/metawibele/tools/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,806   copying build/lib/metawibele/tools/format_protein_sequences.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,808   copying build/lib/metawibele/tools/gene_abundance_indexRef.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,810   copying build/lib/metawibele/tools/gene_catalog_abundance.py -> build/bdist.linux-armv7l/wheel/metawibele/tools
2023-09-28T01:58:30,813   creating build/bdist.linux-armv7l/wheel/metawibele/prioritize
2023-09-28T01:58:30,814   copying build/lib/metawibele/prioritize/quantify_prioritization.py -> build/bdist.linux-armv7l/wheel/metawibele/prioritize
2023-09-28T01:58:30,816   copying build/lib/metawibele/prioritize/filter_prioritization.py -> build/bdist.linux-armv7l/wheel/metawibele/prioritize
2023-09-28T01:58:30,819   copying build/lib/metawibele/prioritize/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele/prioritize
2023-09-28T01:58:30,820   copying build/lib/metawibele/prioritize/finalize_prioritization.py -> build/bdist.linux-armv7l/wheel/metawibele/prioritize
2023-09-28T01:58:30,822   copying build/lib/metawibele/config.py -> build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:30,825   copying build/lib/metawibele/check.py -> build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:30,827   copying build/lib/metawibele/metawibele.py -> build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:30,828   copying build/lib/metawibele/utilities.py -> build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:30,832   creating build/bdist.linux-armv7l/wheel/metawibele/data
2023-09-28T01:58:30,833   creating build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,834   copying build/lib/metawibele/data/domain/INTERACTION.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,839   copying build/lib/metawibele/data/domain/FANTOM5_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,844   copying build/lib/metawibele/data/domain/pdb_chain_pfam.tsv.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,880   copying build/lib/metawibele/data/domain/Encode_sigmoid_colon.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,884   copying build/lib/metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,890   copying build/lib/metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,894   copying build/lib/metawibele/data/domain/gene_ontology.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,898   copying build/lib/metawibele/data/domain/Illumina_Body_Map_colon.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,902   copying build/lib/metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,905   copying build/lib/metawibele/data/domain/README.txt -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,907   copying build/lib/metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:30,911   copying build/lib/metawibele/data/domain/pdb_chain_taxonomy.tsv.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:31,341   copying build/lib/metawibele/data/domain/pfam_descriptions.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/domain
2023-09-28T01:58:31,348   creating build/bdist.linux-armv7l/wheel/metawibele/data/misc
2023-09-28T01:58:31,349   copying build/lib/metawibele/data/misc/vignette_function.tsv -> build/bdist.linux-armv7l/wheel/metawibele/data/misc
2023-09-28T01:58:31,351   creating build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:31,352   copying build/lib/metawibele/data/uniref/map_TaxID_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:31,420   copying build/lib/metawibele/data/uniref/uniref90.demo.fasta.dmnd -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:31,432   copying build/lib/metawibele/data/uniref/uniprot_taxonomy.tsv.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,142   copying build/lib/metawibele/data/uniref/uniprot_taxaID_microbiome.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,192   copying build/lib/metawibele/data/uniref/uniprot_taxaID_mammalia.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,195   copying build/lib/metawibele/data/uniref/uniprot_human_pfam.tsv.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,228   copying build/lib/metawibele/data/uniref/map_Rep_TaxID_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,272   copying build/lib/metawibele/data/uniref/README.txt -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,276   copying build/lib/metawibele/data/uniref/map_Tax_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,352   copying build/lib/metawibele/data/uniref/map_Rep_Tax_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/metawibele/data/uniref
2023-09-28T01:58:32,384   creating build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,385   copying build/lib/metawibele/common/transpose.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,387   copying build/lib/metawibele/common/check_install.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,389   copying build/lib/metawibele/common/download_database.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,391   copying build/lib/metawibele/common/extract_uniprot_pfam.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,394   copying build/lib/metawibele/common/filter_clusters.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,396   copying build/lib/metawibele/common/abundance_normalization.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,399   copying build/lib/metawibele/common/abundance_filtering.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,402   copying build/lib/metawibele/common/extract_abundance_feature_subset.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,404   copying build/lib/metawibele/common/join_family_abundance.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,406   copying build/lib/metawibele/common/extract_abundance_sample_subset.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,409   copying build/lib/metawibele/common/download_config_file.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,411   copying build/lib/metawibele/common/split_family_abundance.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,414   copying build/lib/metawibele/common/prepare_domain_databases.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,417   copying build/lib/metawibele/common/utils.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,420   copying build/lib/metawibele/common/prepare_uniprot_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,424   copying build/lib/metawibele/common/abundance_smoothing.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,426   copying build/lib/metawibele/common/combine_abundance_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,428   copying build/lib/metawibele/common/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,430   copying build/lib/metawibele/common/filter_prevalence.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,431   copying build/lib/metawibele/common/prepare_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,434   copying build/lib/metawibele/common/split_fasta_file.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,436   copying build/lib/metawibele/common/abundance_RPK.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,438   copying build/lib/metawibele/common/prepare_uniprot_taxonomy.py -> build/bdist.linux-armv7l/wheel/metawibele/common
2023-09-28T01:58:32,441   creating build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,442   copying build/lib/metawibele/characterize/interproscan_tmhmm_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,445   copying build/lib/metawibele/characterize/maaslin2_collection.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,449   copying build/lib/metawibele/characterize/mspminer_msp_taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,452   copying build/lib/metawibele/characterize/interproscan_protein.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,455   copying build/lib/metawibele/characterize/summary_function_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,460   copying build/lib/metawibele/characterize/uniref_protein.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,463   copying build/lib/metawibele/characterize/summary_all_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,466   copying build/lib/metawibele/characterize/maaslin2.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,468   copying build/lib/metawibele/characterize/maaslin2_summary.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,470   copying build/lib/metawibele/characterize/interproscan_pfam_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,473   copying build/lib/metawibele/characterize/abundance_annotator.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,475   copying build/lib/metawibele/characterize/msp_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,477   copying build/lib/metawibele/characterize/denovo_TM_SP.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,480   copying build/lib/metawibele/characterize/interproscan_phobius_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,482   copying build/lib/metawibele/characterize/psortb_protein.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,484   copying build/lib/metawibele/characterize/interproscan_signalp_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,486   copying build/lib/metawibele/characterize/mspminer_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,489   copying build/lib/metawibele/characterize/psortb_annotator.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,491   copying build/lib/metawibele/characterize/sum_to_protein_family_abundance.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,493   copying build/lib/metawibele/characterize/ddi_DOMINE_ann.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,495   copying build/lib/metawibele/characterize/uniref_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,497   copying build/lib/metawibele/characterize/interproscan_annotator.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,499   copying build/lib/metawibele/characterize/psortb_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,502   copying build/lib/metawibele/characterize/finalize_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,504   copying build/lib/metawibele/characterize/mspminer_msp_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,507   copying build/lib/metawibele/characterize/ddi_DOMINE_ExpAtlas.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,509   copying build/lib/metawibele/characterize/ddi_DOMINE_protein.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,511   copying build/lib/metawibele/characterize/pfam2go.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,513   copying build/lib/metawibele/characterize/summary_protein_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,516   copying build/lib/metawibele/characterize/interproscan_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,519   copying build/lib/metawibele/characterize/utils.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,521   copying build/lib/metawibele/characterize/maaslin2_annotator.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,523   copying build/lib/metawibele/characterize/summary_protein_family_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,525   copying build/lib/metawibele/characterize/mspminer_protein_family_taxonomy.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,528   copying build/lib/metawibele/characterize/metadata_format.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,530   copying build/lib/metawibele/characterize/mspminer_msp.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,532   copying build/lib/metawibele/characterize/mspminer_protein.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,534   copying build/lib/metawibele/characterize/ddi_DOMINE_protein_family.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,537   copying build/lib/metawibele/characterize/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,538   copying build/lib/metawibele/characterize/uniref_annotator.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,540   copying build/lib/metawibele/characterize/uniref_annotator_stat.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,542   copying build/lib/metawibele/characterize/ddi_DOMINE_SIFTS.py -> build/bdist.linux-armv7l/wheel/metawibele/characterize
2023-09-28T01:58:32,546   creating build/bdist.linux-armv7l/wheel/metawibele/configs
2023-09-28T01:58:32,547   copying build/lib/metawibele/configs/metawibele.cfg -> build/bdist.linux-armv7l/wheel/metawibele/configs
2023-09-28T01:58:32,549   copying build/lib/metawibele/configs/MSPminer_setting.cfg -> build/bdist.linux-armv7l/wheel/metawibele/configs
2023-09-28T01:58:32,551   copying build/lib/metawibele/configs/prioritization.cfg -> build/bdist.linux-armv7l/wheel/metawibele/configs
2023-09-28T01:58:32,553   copying build/lib/metawibele/configs/characterization.cfg -> build/bdist.linux-armv7l/wheel/metawibele/configs
2023-09-28T01:58:32,555   creating build/bdist.linux-armv7l/wheel/metawibele/tasks
2023-09-28T01:58:32,556   copying build/lib/metawibele/tasks/characterization.py -> build/bdist.linux-armv7l/wheel/metawibele/tasks
2023-09-28T01:58:32,560   copying build/lib/metawibele/tasks/prioritization.py -> build/bdist.linux-armv7l/wheel/metawibele/tasks
2023-09-28T01:58:32,562   copying build/lib/metawibele/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele/tasks
2023-09-28T01:58:32,564   creating build/bdist.linux-armv7l/wheel/metawibele/Rscripts
2023-09-28T01:58:32,565   copying build/lib/metawibele/Rscripts/pcl_utils.R -> build/bdist.linux-armv7l/wheel/metawibele/Rscripts
2023-09-28T01:58:32,569   copying build/lib/metawibele/Rscripts/maaslin2_utils.R -> build/bdist.linux-armv7l/wheel/metawibele/Rscripts
2023-09-28T01:58:32,571   copying build/lib/metawibele/__init__.py -> build/bdist.linux-armv7l/wheel/metawibele
2023-09-28T01:58:32,573   creating build/bdist.linux-armv7l/wheel/metawibele/workflows
2023-09-28T01:58:32,574   copying build/lib/metawibele/workflows/prioritize.py -> build/bdist.linux-armv7l/wheel/metawibele/workflows
2023-09-28T01:58:32,576   copying build/lib/metawibele/workflows/characterize.py -> build/bdist.linux-armv7l/wheel/metawibele/workflows
2023-09-28T01:58:32,579   copying build/lib/metawibele/workflows/preprocess.py -> build/bdist.linux-armv7l/wheel/metawibele/workflows
2023-09-28T01:58:32,581   running install_egg_info
2023-09-28T01:58:32,647   running egg_info
2023-09-28T01:58:32,677   writing metawibele.egg-info/PKG-INFO
2023-09-28T01:58:32,679   writing dependency_links to metawibele.egg-info/dependency_links.txt
2023-09-28T01:58:32,684   writing entry points to metawibele.egg-info/entry_points.txt
2023-09-28T01:58:32,686   writing top-level names to metawibele.egg-info/top_level.txt
2023-09-28T01:58:32,726   reading manifest file 'metawibele.egg-info/SOURCES.txt'
2023-09-28T01:58:32,731   reading manifest template 'MANIFEST.in'
2023-09-28T01:58:32,732   warning: no files found matching 'readme.md'
2023-09-28T01:58:32,747   adding license file 'LICENSE'
2023-09-28T01:58:32,755   writing manifest file 'metawibele.egg-info/SOURCES.txt'
2023-09-28T01:58:32,757   Copying metawibele.egg-info to build/bdist.linux-armv7l/wheel/metawibele-0.4.7-py3.11.egg-info
2023-09-28T01:58:32,769   running install_scripts
2023-09-28T01:58:32,770   creating build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data
2023-09-28T01:58:32,771   creating build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts
2023-09-28T01:58:32,772   copying build/scripts-3.11/prioritize.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts
2023-09-28T01:58:32,774   copying build/scripts-3.11/characterize.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts
2023-09-28T01:58:32,777   copying build/scripts-3.11/preprocess.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts
2023-09-28T01:58:32,779   changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts/prioritize.py to 755
2023-09-28T01:58:32,779   changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts/characterize.py to 755
2023-09-28T01:58:32,780   changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.7.data/scripts/preprocess.py to 755
2023-09-28T01:58:32,793   creating build/bdist.linux-armv7l/wheel/metawibele-0.4.7.dist-info/WHEEL
2023-09-28T01:58:32,795   creating '/tmp/pip-wheel-y8813rec/metawibele-0.4.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-28T01:58:32,797   adding 'metawibele/__init__.py'
2023-09-28T01:58:32,799   adding 'metawibele/check.py'
2023-09-28T01:58:32,802   adding 'metawibele/config.py'
2023-09-28T01:58:32,803   adding 'metawibele/metawibele.py'
2023-09-28T01:58:32,807   adding 'metawibele/utilities.py'
2023-09-28T01:58:32,810   adding 'metawibele/Rscripts/maaslin2_utils.R'
2023-09-28T01:58:32,816   adding 'metawibele/Rscripts/pcl_utils.R'
2023-09-28T01:58:32,819   adding 'metawibele/characterize/__init__.py'
2023-09-28T01:58:32,821   adding 'metawibele/characterize/abundance_annotator.py'
2023-09-28T01:58:32,823   adding 'metawibele/characterize/ddi_DOMINE_ExpAtlas.py'
2023-09-28T01:58:32,825   adding 'metawibele/characterize/ddi_DOMINE_SIFTS.py'
2023-09-28T01:58:32,828   adding 'metawibele/characterize/ddi_DOMINE_ann.py'
2023-09-28T01:58:32,830   adding 'metawibele/characterize/ddi_DOMINE_protein.py'
2023-09-28T01:58:32,832   adding 'metawibele/characterize/ddi_DOMINE_protein_family.py'
2023-09-28T01:58:32,833   adding 'metawibele/characterize/denovo_TM_SP.py'
2023-09-28T01:58:32,836   adding 'metawibele/characterize/finalize_annotation.py'
2023-09-28T01:58:32,837   adding 'metawibele/characterize/interproscan_annotator.py'
2023-09-28T01:58:32,839   adding 'metawibele/characterize/interproscan_pfam_protein_family.py'
2023-09-28T01:58:32,841   adding 'metawibele/characterize/interproscan_phobius_protein_family.py'
2023-09-28T01:58:32,843   adding 'metawibele/characterize/interproscan_protein.py'
2023-09-28T01:58:32,845   adding 'metawibele/characterize/interproscan_protein_family.py'
2023-09-28T01:58:32,847   adding 'metawibele/characterize/interproscan_signalp_protein_family.py'
2023-09-28T01:58:32,849   adding 'metawibele/characterize/interproscan_tmhmm_protein_family.py'
2023-09-28T01:58:32,851   adding 'metawibele/characterize/maaslin2.py'
2023-09-28T01:58:32,852   adding 'metawibele/characterize/maaslin2_annotator.py'
2023-09-28T01:58:32,855   adding 'metawibele/characterize/maaslin2_collection.py'
2023-09-28T01:58:32,857   adding 'metawibele/characterize/maaslin2_summary.py'
2023-09-28T01:58:32,859   adding 'metawibele/characterize/metadata_format.py'
2023-09-28T01:58:32,860   adding 'metawibele/characterize/msp_protein_family.py'
2023-09-28T01:58:32,862   adding 'metawibele/characterize/mspminer_msp.py'
2023-09-28T01:58:32,864   adding 'metawibele/characterize/mspminer_msp_taxonomy_annotation.py'
2023-09-28T01:58:32,865   adding 'metawibele/characterize/mspminer_msp_uniref_annotation.py'
2023-09-28T01:58:32,867   adding 'metawibele/characterize/mspminer_protein.py'
2023-09-28T01:58:32,870   adding 'metawibele/characterize/mspminer_protein_family.py'
2023-09-28T01:58:32,872   adding 'metawibele/characterize/mspminer_protein_family_taxonomy.py'
2023-09-28T01:58:32,874   adding 'metawibele/characterize/pfam2go.py'
2023-09-28T01:58:32,875   adding 'metawibele/characterize/psortb_annotator.py'
2023-09-28T01:58:32,877   adding 'metawibele/characterize/psortb_protein.py'
2023-09-28T01:58:32,879   adding 'metawibele/characterize/psortb_protein_family.py'
2023-09-28T01:58:32,881   adding 'metawibele/characterize/sum_to_protein_family_abundance.py'
2023-09-28T01:58:32,882   adding 'metawibele/characterize/summary_all_annotation.py'
2023-09-28T01:58:32,884   adding 'metawibele/characterize/summary_function_annotation.py'
2023-09-28T01:58:32,887   adding 'metawibele/characterize/summary_protein_family_uniref_annotation.py'
2023-09-28T01:58:32,889   adding 'metawibele/characterize/summary_protein_uniref_annotation.py'
2023-09-28T01:58:32,891   adding 'metawibele/characterize/uniref_annotator.py'
2023-09-28T01:58:32,893   adding 'metawibele/characterize/uniref_annotator_stat.py'
2023-09-28T01:58:32,895   adding 'metawibele/characterize/uniref_protein.py'
2023-09-28T01:58:32,898   adding 'metawibele/characterize/uniref_protein_family.py'
2023-09-28T01:58:32,900   adding 'metawibele/characterize/utils.py'
2023-09-28T01:58:32,902   adding 'metawibele/common/__init__.py'
2023-09-28T01:58:32,903   adding 'metawibele/common/abundance_RPK.py'
2023-09-28T01:58:32,904   adding 'metawibele/common/abundance_filtering.py'
2023-09-28T01:58:32,906   adding 'metawibele/common/abundance_normalization.py'
2023-09-28T01:58:32,908   adding 'metawibele/common/abundance_smoothing.py'
2023-09-28T01:58:32,910   adding 'metawibele/common/check_install.py'
2023-09-28T01:58:32,911   adding 'metawibele/common/combine_abundance_annotation.py'
2023-09-28T01:58:32,913   adding 'metawibele/common/download_config_file.py'
2023-09-28T01:58:32,914   adding 'metawibele/common/download_database.py'
2023-09-28T01:58:32,916   adding 'metawibele/common/extract_abundance_feature_subset.py'
2023-09-28T01:58:32,917   adding 'metawibele/common/extract_abundance_sample_subset.py'
2023-09-28T01:58:32,919   adding 'metawibele/common/extract_uniprot_pfam.py'
2023-09-28T01:58:32,920   adding 'metawibele/common/filter_clusters.py'
2023-09-28T01:58:32,921   adding 'metawibele/common/filter_prevalence.py'
2023-09-28T01:58:32,923   adding 'metawibele/common/join_family_abundance.py'
2023-09-28T01:58:32,924   adding 'metawibele/common/prepare_domain_databases.py'
2023-09-28T01:58:32,926   adding 'metawibele/common/prepare_uniprot_annotation.py'
2023-09-28T01:58:32,928   adding 'metawibele/common/prepare_uniprot_taxonomy.py'
2023-09-28T01:58:32,931   adding 'metawibele/common/prepare_uniref_annotation.py'
2023-09-28T01:58:32,932   adding 'metawibele/common/split_family_abundance.py'
2023-09-28T01:58:32,934   adding 'metawibele/common/split_fasta_file.py'
2023-09-28T01:58:32,935   adding 'metawibele/common/transpose.py'
2023-09-28T01:58:32,937   adding 'metawibele/common/utils.py'
2023-09-28T01:58:32,938   adding 'metawibele/configs/MSPminer_setting.cfg'
2023-09-28T01:58:32,939   adding 'metawibele/configs/characterization.cfg'
2023-09-28T01:58:32,941   adding 'metawibele/configs/metawibele.cfg'
2023-09-28T01:58:32,942   adding 'metawibele/configs/prioritization.cfg'
2023-09-28T01:58:32,964   adding 'metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz'
2023-09-28T01:58:32,979   adding 'metawibele/data/domain/Encode_sigmoid_colon.txt.gz'
2023-09-28T01:58:32,997   adding 'metawibele/data/domain/FANTOM5_colon_rectum.txt.gz'
2023-09-28T01:58:33,018   adding 'metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz'
2023-09-28T01:58:33,024   adding 'metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz'
2023-09-28T01:58:33,034   adding 'metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz'
2023-09-28T01:58:33,052   adding 'metawibele/data/domain/INTERACTION.txt.gz'
2023-09-28T01:58:33,068   adding 'metawibele/data/domain/Illumina_Body_Map_colon.txt.gz'
2023-09-28T01:58:33,070   adding 'metawibele/data/domain/README.txt'
2023-09-28T01:58:33,082   adding 'metawibele/data/domain/gene_ontology.txt.gz'
2023-09-28T01:58:33,352   adding 'metawibele/data/domain/pdb_chain_pfam.tsv.gz'
2023-09-28T01:58:36,367   adding 'metawibele/data/domain/pdb_chain_taxonomy.tsv.gz'
2023-09-28T01:58:36,614   adding 'metawibele/data/domain/pfam_descriptions.txt.gz'
2023-09-28T01:58:36,618   adding 'metawibele/data/misc/vignette_function.tsv'
2023-09-28T01:58:36,620   adding 'metawibele/data/uniref/README.txt'
2023-09-28T01:58:36,825   adding 'metawibele/data/uniref/map_Rep_TaxID_uniref90.demo.txt.gz'
2023-09-28T01:58:37,044   adding 'metawibele/data/uniref/map_Rep_Tax_uniref90.demo.txt.gz'
2023-09-28T01:58:37,639   adding 'metawibele/data/uniref/map_TaxID_uniref90.demo.txt.gz'
2023-09-28T01:58:38,249   adding 'metawibele/data/uniref/map_Tax_uniref90.demo.txt.gz'
2023-09-28T01:58:38,531   adding 'metawibele/data/uniref/uniprot_human_pfam.tsv.gz'
2023-09-28T01:58:38,553   adding 'metawibele/data/uniref/uniprot_taxaID_mammalia.txt.gz'
2023-09-28T01:58:38,754   adding 'metawibele/data/uniref/uniprot_taxaID_microbiome.txt.gz'
2023-09-28T01:58:44,390   adding 'metawibele/data/uniref/uniprot_taxonomy.tsv.gz'
2023-09-28T01:58:44,865   adding 'metawibele/data/uniref/uniref90.demo.fasta.dmnd'
2023-09-28T01:58:44,872   adding 'metawibele/prioritize/__init__.py'
2023-09-28T01:58:44,874   adding 'metawibele/prioritize/filter_prioritization.py'
2023-09-28T01:58:44,876   adding 'metawibele/prioritize/finalize_prioritization.py'
2023-09-28T01:58:44,879   adding 'metawibele/prioritize/quantify_prioritization.py'
2023-09-28T01:58:44,881   adding 'metawibele/tasks/__init__.py'
2023-09-28T01:58:44,887   adding 'metawibele/tasks/characterization.py'
2023-09-28T01:58:44,889   adding 'metawibele/tasks/prioritization.py'
2023-09-28T01:58:44,891   adding 'metawibele/tools/__init__.py'
2023-09-28T01:58:44,893   adding 'metawibele/tools/combine_gene_sequences.py'
2023-09-28T01:58:44,894   adding 'metawibele/tools/extract_cluster_CD_hit.py'
2023-09-28T01:58:44,896   adding 'metawibele/tools/extract_complete_ORF_seq.py'
2023-09-28T01:58:44,897   adding 'metawibele/tools/extract_non_redundance_seq.py'
2023-09-28T01:58:44,898   adding 'metawibele/tools/extract_protein_coding_genes.py'
2023-09-28T01:58:44,900   adding 'metawibele/tools/format_contig_sequences.py'
2023-09-28T01:58:44,902   adding 'metawibele/tools/format_protein_sequences.py'
2023-09-28T01:58:44,903   adding 'metawibele/tools/gene_abundance.py'
2023-09-28T01:58:44,905   adding 'metawibele/tools/gene_abundance_indexRef.py'
2023-09-28T01:58:44,906   adding 'metawibele/tools/gene_catalog_abundance.py'
2023-09-28T01:58:44,909   adding 'metawibele/tools/preprocessing_tasks.py'
2023-09-28T01:58:44,912   adding 'metawibele/workflows/characterize.py'
2023-09-28T01:58:44,914   adding 'metawibele/workflows/preprocess.py'
2023-09-28T01:58:44,915   adding 'metawibele/workflows/prioritize.py'
2023-09-28T01:58:44,918   adding 'metawibele-0.4.7.data/scripts/characterize.py'
2023-09-28T01:58:44,920   adding 'metawibele-0.4.7.data/scripts/preprocess.py'
2023-09-28T01:58:44,922   adding 'metawibele-0.4.7.data/scripts/prioritize.py'
2023-09-28T01:58:44,923   adding 'metawibele-0.4.7.dist-info/LICENSE'
2023-09-28T01:58:44,924   adding 'metawibele-0.4.7.dist-info/METADATA'
2023-09-28T01:58:44,925   adding 'metawibele-0.4.7.dist-info/WHEEL'
2023-09-28T01:58:44,927   adding 'metawibele-0.4.7.dist-info/entry_points.txt'
2023-09-28T01:58:44,928   adding 'metawibele-0.4.7.dist-info/top_level.txt'
2023-09-28T01:58:44,930   adding 'metawibele-0.4.7.dist-info/RECORD'
2023-09-28T01:58:45,463   removing build/bdist.linux-armv7l/wheel
2023-09-28T01:58:45,648   Building wheel for metawibele (setup.py): finished with status 'done'
2023-09-28T01:58:47,610   Created wheel for metawibele: filename=metawibele-0.4.7-py3-none-any.whl size=84127141 sha256=f054dfb994190969f26dad16f7429125b7a4b3a54bd1ff377ceb772bc5d98f8f
2023-09-28T01:58:47,611   Stored in directory: /tmp/pip-ephem-wheel-cache-7nmoeqsy/wheels/93/43/a3/1e65fb999d4e74712554b1a9b9f4b940f883ff3255ef4758f1
2023-09-28T01:58:47,649 Successfully built metawibele
2023-09-28T01:58:49,599 Removed build tracker: '/tmp/pip-build-tracker-3gg5utgr'