2023-09-28T07:18:18,746 Created temporary directory: /tmp/pip-build-tracker-pb74kt22
2023-09-28T07:18:18,747 Initialized build tracking at /tmp/pip-build-tracker-pb74kt22
2023-09-28T07:18:18,747 Created build tracker: /tmp/pip-build-tracker-pb74kt22
2023-09-28T07:18:18,748 Entered build tracker: /tmp/pip-build-tracker-pb74kt22
2023-09-28T07:18:18,749 Created temporary directory: /tmp/pip-wheel-cs5eds4d
2023-09-28T07:18:18,752 Created temporary directory: /tmp/pip-ephem-wheel-cache-5135t_5v
2023-09-28T07:18:18,773 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-28T07:18:18,777 2 location(s) to search for versions of satmut-utils:
2023-09-28T07:18:18,777 * https://pypi.org/simple/satmut-utils/
2023-09-28T07:18:18,777 * https://www.piwheels.org/simple/satmut-utils/
2023-09-28T07:18:18,778 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2023-09-28T07:18:18,779 Getting page https://pypi.org/simple/satmut-utils/
2023-09-28T07:18:18,780 Found index url https://pypi.org/simple/
2023-09-28T07:18:19,000 Fetched page https://pypi.org/simple/satmut-utils/ as application/vnd.pypi.simple.v1+json
2023-09-28T07:18:19,003   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,004   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2023-09-28T07:18:19,005   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/c1/c3/5c2d910cb9364b7f3a8ef7bea6aef6914c374cc1cfe7b7a217f4329fb167/satmut_utils-1.0.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,006   Found link https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.1
2023-09-28T07:18:19,007   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/66/c0/576dbee34d884808eac267f6726c217d0bb366d6aa0d0d24fea1f1103def/satmut_utils-1.0.2-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,008   Found link https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.2
2023-09-28T07:18:19,009   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/85/2f/44449e247d8203168cd338bef490d92314d66b2dc0ea15ef3d03c6d7a9d1/satmut_utils-1.0.3-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,010   Found link https://files.pythonhosted.org/packages/33/f7/68da077554cf885a0fed028748c6e419bb97f64faa0a253ff4993fd08524/satmut_utils-1.0.3.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.3
2023-09-28T07:18:19,010   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/6b/66/2954cd80d73c55edbb61264e43335a0366eed686d458e0dec85191729f59/satmut_utils-1.0.4-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,011   Found link https://files.pythonhosted.org/packages/af/18/b40883e3aafdf867c3bc41141a21857eb93526b46a6fd0d64321a66f1cf1/satmut_utils-1.0.4.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.4
2023-09-28T07:18:19,012   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/35/c8/5c54c3de3fc74482be64cea35d3786a6bc1388d1f0cfce81a8480f1e8ec9/satmut_utils-1.1.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,013   Found link https://files.pythonhosted.org/packages/05/0b/7376e3610e664b48ee4c5d3a97924bae56338bb1a4c507e01b650e01b079/satmut_utils-1.1.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.1.0
2023-09-28T07:18:19,014   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/6e/7c/ee78402b228696789f5664dd0af60d1a055332a6ded0fc4c764d99f58e74/satmut_utils-1.1.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,015   Found link https://files.pythonhosted.org/packages/e5/cf/de6d723ed9f741f52bfbf83e1e3fa516383d8e46a5190bfe10eda8afdfdb/satmut_utils-1.1.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.1.1
2023-09-28T07:18:19,016 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2023-09-28T07:18:19,016 Getting page https://www.piwheels.org/simple/satmut-utils/
2023-09-28T07:18:19,017 Found index url https://www.piwheels.org/simple/
2023-09-28T07:18:19,178 Fetched page https://www.piwheels.org/simple/satmut-utils/ as text/html
2023-09-28T07:18:19,180   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.4-py3-none-any.whl#sha256=323a13eb1dd75261586bd6c887dd223a40587742ca7aed6cdd40cbae05856a6f (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,181   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.3-py3-none-any.whl#sha256=59c120e0a32ed07a847cb94d055d007d238e8c9aa7ec6bbe5c792542ffeab2ca (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,181   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.2-py3-none-any.whl#sha256=b3eaebca5f040ebf0c60f26e3b9ccef1935ce70852728f24b3a1623f4c791c20 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,182   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.1-py3-none-any.whl#sha256=3f7c43b678b5e344409e2cb0718742684066d907768826a7d19b85b4c43adae6 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,183   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.0-py3-none-any.whl#sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2023-09-28T07:18:19,184 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2023-09-28T07:18:19,184 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2023-09-28T07:18:19,203 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2023-09-28T07:18:19,222 Collecting satmut-utils==1.1.0
2023-09-28T07:18:19,224   Created temporary directory: /tmp/pip-unpack-21xz94jr
2023-09-28T07:18:19,865   Downloading satmut_utils-1.1.0.tar.gz (12.0 MB)
2023-09-28T07:18:22,942   Added satmut-utils==1.1.0 from https://files.pythonhosted.org/packages/05/0b/7376e3610e664b48ee4c5d3a97924bae56338bb1a4c507e01b650e01b079/satmut_utils-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-pb74kt22'
2023-09-28T07:18:22,947   Created temporary directory: /tmp/pip-build-env-1agwyk2d
2023-09-28T07:18:22,951   Installing build dependencies: started
2023-09-28T07:18:22,953   Running command pip subprocess to install build dependencies
2023-09-28T07:18:24,128   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-28T07:18:24,635   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-28T07:18:26,181   Collecting setuptools>=59
2023-09-28T07:18:26,182     Obtaining dependency information for setuptools>=59 from https://files.pythonhosted.org/packages/bb/26/7945080113158354380a12ce26873dd6c1ebd88d47f5bc24e2c5bb38c16a/setuptools-68.2.2-py3-none-any.whl.metadata
2023-09-28T07:18:26,188     Using cached setuptools-68.2.2-py3-none-any.whl.metadata (6.3 kB)
2023-09-28T07:18:26,394   Collecting wheel
2023-09-28T07:18:26,409     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-28T07:18:26,584   Using cached setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-28T07:18:29,027   Installing collected packages: wheel, setuptools
2023-09-28T07:18:29,251     Creating /tmp/pip-build-env-1agwyk2d/overlay/local/bin
2023-09-28T07:18:29,253     changing mode of /tmp/pip-build-env-1agwyk2d/overlay/local/bin/wheel to 755
2023-09-28T07:18:31,455   Successfully installed setuptools-68.2.2 wheel-0.41.2
2023-09-28T07:18:32,039   Installing build dependencies: finished with status 'done'
2023-09-28T07:18:32,042   Getting requirements to build wheel: started
2023-09-28T07:18:32,043   Running command Getting requirements to build wheel
2023-09-28T07:18:32,675   running egg_info
2023-09-28T07:18:32,681   writing src/satmut_utils.egg-info/PKG-INFO
2023-09-28T07:18:32,684   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2023-09-28T07:18:32,686   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2023-09-28T07:18:32,688   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2023-09-28T07:18:32,711   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:32,715   reading manifest template 'MANIFEST.in'
2023-09-28T07:18:32,718   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-09-28T07:18:32,718   adding license file 'LICENSE.txt'
2023-09-28T07:18:32,723   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:32,799   Getting requirements to build wheel: finished with status 'done'
2023-09-28T07:18:32,809   Created temporary directory: /tmp/pip-modern-metadata-jdi310ud
2023-09-28T07:18:32,811   Preparing metadata (pyproject.toml): started
2023-09-28T07:18:32,813   Running command Preparing metadata (pyproject.toml)
2023-09-28T07:18:33,338   running dist_info
2023-09-28T07:18:33,358   creating /tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info
2023-09-28T07:18:33,363   writing /tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/PKG-INFO
2023-09-28T07:18:33,366   writing dependency_links to /tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/dependency_links.txt
2023-09-28T07:18:33,368   writing entry points to /tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/entry_points.txt
2023-09-28T07:18:33,370   writing top-level names to /tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/top_level.txt
2023-09-28T07:18:33,371   writing manifest file '/tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:33,390   reading manifest file '/tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:33,393   reading manifest template 'MANIFEST.in'
2023-09-28T07:18:33,396   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-09-28T07:18:33,396   adding license file 'LICENSE.txt'
2023-09-28T07:18:33,399   writing manifest file '/tmp/pip-modern-metadata-jdi310ud/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:33,400   creating '/tmp/pip-modern-metadata-jdi310ud/satmut_utils-1.1.0.dist-info'
2023-09-28T07:18:33,581   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-28T07:18:33,586   Source in /tmp/pip-wheel-cs5eds4d/satmut-utils_b06bc43de3fd42bdaf542abf1bb64abb has version 1.1.0, which satisfies requirement satmut-utils==1.1.0 from https://files.pythonhosted.org/packages/05/0b/7376e3610e664b48ee4c5d3a97924bae56338bb1a4c507e01b650e01b079/satmut_utils-1.1.0.tar.gz
2023-09-28T07:18:33,587   Removed satmut-utils==1.1.0 from https://files.pythonhosted.org/packages/05/0b/7376e3610e664b48ee4c5d3a97924bae56338bb1a4c507e01b650e01b079/satmut_utils-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-pb74kt22'
2023-09-28T07:18:33,592 Created temporary directory: /tmp/pip-unpack-jaea6a2z
2023-09-28T07:18:33,594 Created temporary directory: /tmp/pip-unpack-noxcpoyt
2023-09-28T07:18:33,597 Building wheels for collected packages: satmut-utils
2023-09-28T07:18:33,601   Created temporary directory: /tmp/pip-wheel-usctbbwl
2023-09-28T07:18:33,601   Destination directory: /tmp/pip-wheel-usctbbwl
2023-09-28T07:18:33,603   Building wheel for satmut-utils (pyproject.toml): started
2023-09-28T07:18:33,604   Running command Building wheel for satmut-utils (pyproject.toml)
2023-09-28T07:18:34,175   running bdist_wheel
2023-09-28T07:18:34,218   running build
2023-09-28T07:18:34,218   running build_py
2023-09-28T07:18:34,225   creating build
2023-09-28T07:18:34,225   creating build/lib
2023-09-28T07:18:34,226   creating build/lib/core_utils
2023-09-28T07:18:34,227   copying src/core_utils/__init__.py -> build/lib/core_utils
2023-09-28T07:18:34,228   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
2023-09-28T07:18:34,231   copying src/core_utils/string_utils.py -> build/lib/core_utils
2023-09-28T07:18:34,232   copying src/core_utils/file_utils.py -> build/lib/core_utils
2023-09-28T07:18:34,234   copying src/core_utils/vcf_utils.py -> build/lib/core_utils
2023-09-28T07:18:34,236   creating build/lib/tests
2023-09-28T07:18:34,237   copying src/tests/__init__.py -> build/lib/tests
2023-09-28T07:18:34,239   creating build/lib/analysis
2023-09-28T07:18:34,240   copying src/analysis/aligners.py -> build/lib/analysis
2023-09-28T07:18:34,242   copying src/analysis/read_preprocessor.py -> build/lib/analysis
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2023-09-28T07:18:34,250   copying src/analysis/read_editor.py -> build/lib/analysis
2023-09-28T07:18:34,253   copying src/analysis/references.py -> build/lib/analysis
2023-09-28T07:18:34,255   copying src/analysis/variant_caller.py -> build/lib/analysis
2023-09-28T07:18:34,258   copying src/analysis/seq_utils.py -> build/lib/analysis
2023-09-28T07:18:34,261   creating build/lib/satmut_utils
2023-09-28T07:18:34,262   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2023-09-28T07:18:34,263   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2023-09-28T07:18:34,265   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2023-09-28T07:18:34,268   creating build/lib/scripts
2023-09-28T07:18:34,268   copying src/scripts/__init__.py -> build/lib/scripts
2023-09-28T07:18:34,270   copying src/scripts/run_bowtie2_aligner.py -> build/lib/scripts
2023-09-28T07:18:34,272   copying src/scripts/run_fastq_preprocessor.py -> build/lib/scripts
2023-09-28T07:18:34,274   creating build/lib/tests/core_utils
2023-09-28T07:18:34,275   copying src/tests/core_utils/test_string_utils.py -> build/lib/tests/core_utils
2023-09-28T07:18:34,277   copying src/tests/core_utils/__init__.py -> build/lib/tests/core_utils
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2023-09-28T07:18:34,280   copying src/tests/core_utils/test_file_utils.py -> build/lib/tests/core_utils
2023-09-28T07:18:34,283   creating build/lib/tests/analysis
2023-09-28T07:18:34,283   copying src/tests/analysis/test_aligners.py -> build/lib/tests/analysis
2023-09-28T07:18:34,285   copying src/tests/analysis/test_references.py -> build/lib/tests/analysis
2023-09-28T07:18:34,287   copying src/tests/analysis/__init__.py -> build/lib/tests/analysis
2023-09-28T07:18:34,289   copying src/tests/analysis/test_variant_caller.py -> build/lib/tests/analysis
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2023-09-28T07:18:34,294   copying src/tests/analysis/test_seq_utils.py -> build/lib/tests/analysis
2023-09-28T07:18:34,297   copying src/tests/analysis/test_coordinate_mapper.py -> build/lib/tests/analysis
2023-09-28T07:18:34,299   copying src/tests/analysis/test_read_editor.py -> build/lib/tests/analysis
2023-09-28T07:18:34,303   creating build/lib/tests/test_data
2023-09-28T07:18:34,303   copying src/tests/test_data/__init__.py -> build/lib/tests/test_data
2023-09-28T07:18:34,305   running egg_info
2023-09-28T07:18:34,308   writing src/satmut_utils.egg-info/PKG-INFO
2023-09-28T07:18:34,311   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2023-09-28T07:18:34,313   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2023-09-28T07:18:34,314   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2023-09-28T07:18:34,323   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:34,326   reading manifest template 'MANIFEST.in'
2023-09-28T07:18:34,329   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-09-28T07:18:34,330   adding license file 'LICENSE.txt'
2023-09-28T07:18:34,334   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2023-09-28T07:18:34,338   copying src/tests/test_data/CBS.fa -> build/lib/tests/test_data
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2023-09-28T07:18:34,422   copying src/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/lib/tests/test_data
2023-09-28T07:18:34,483   copying src/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/lib/tests/test_data
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2023-09-28T07:18:34,488   copying src/tests/test_data/CBS_pEZY3_primers.bed -> build/lib/tests/test_data
2023-09-28T07:18:34,490   copying src/tests/test_data/CBS_pEZY3_targets.bed -> build/lib/tests/test_data
2023-09-28T07:18:34,492   copying src/tests/test_data/CBS_sim.R1.fq.gz -> build/lib/tests/test_data
2023-09-28T07:18:34,494   copying src/tests/test_data/CBS_sim.R2.fq.gz -> build/lib/tests/test_data
2023-09-28T07:18:34,496   copying src/tests/test_data/CBS_sim.bam -> build/lib/tests/test_data
2023-09-28T07:18:34,498   copying src/tests/test_data/CBS_sim.bam.bai -> build/lib/tests/test_data
2023-09-28T07:18:34,500   copying src/tests/test_data/CBS_sim.vcf -> build/lib/tests/test_data
2023-09-28T07:18:34,502   copying src/tests/test_data/CBS_sim_primers.bed -> build/lib/tests/test_data
2023-09-28T07:18:34,505   copying src/tests/test_data/GRCh38.chr21.fa.gz -> build/lib/tests/test_data
2023-09-28T07:18:34,672   copying src/tests/test_data/PKNOX1.fa -> build/lib/tests/test_data
2023-09-28T07:18:34,674   copying src/tests/test_data/appris_human_24_01_2019_selected.fa -> build/lib/tests/test_data
2023-09-28T07:18:34,677   copying src/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/lib/tests/test_data
2023-09-28T07:18:34,679   copying src/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/lib/tests/test_data
2023-09-28T07:18:34,681   copying src/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/lib/tests/test_data
2023-09-28T07:18:34,683   copying src/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/lib/tests/test_data
2023-09-28T07:18:34,685   copying src/tests/test_data/gencode.v29.annotation.gtf -> build/lib/tests/test_data
2023-09-28T07:18:34,688   copying src/tests/test_data/test_preprocess.bam -> build/lib/tests/test_data
2023-09-28T07:18:34,690   copying src/tests/test_data/test_preprocess.bam.bai -> build/lib/tests/test_data
2023-09-28T07:18:34,692   copying src/tests/test_data/test_preprocess.sam -> build/lib/tests/test_data
2023-09-28T07:18:34,695   copying src/tests/test_data/test_preprocess.sort.bam -> build/lib/tests/test_data
2023-09-28T07:18:34,697   copying src/tests/test_data/test_preprocess.sort.bam.bai -> build/lib/tests/test_data
2023-09-28T07:18:34,712   installing to build/bdist.linux-armv7l/wheel
2023-09-28T07:18:34,712   running install
2023-09-28T07:18:34,737   running install_lib
2023-09-28T07:18:34,743   creating build/bdist.linux-armv7l
2023-09-28T07:18:34,743   creating build/bdist.linux-armv7l/wheel
2023-09-28T07:18:34,745   creating build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,746   copying build/lib/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,747   copying build/lib/core_utils/feature_file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,750   copying build/lib/core_utils/string_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,752   copying build/lib/core_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,754   copying build/lib/core_utils/vcf_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2023-09-28T07:18:34,758   creating build/bdist.linux-armv7l/wheel/tests
2023-09-28T07:18:34,759   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2023-09-28T07:18:34,760   copying build/lib/tests/core_utils/test_string_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-09-28T07:18:34,762   copying build/lib/tests/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-09-28T07:18:34,764   copying build/lib/tests/core_utils/test_feature_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-09-28T07:18:34,767   copying build/lib/tests/core_utils/test_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2023-09-28T07:18:34,769   creating build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,770   copying build/lib/tests/analysis/test_aligners.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,773   copying build/lib/tests/analysis/test_references.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,775   copying build/lib/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,777   copying build/lib/tests/analysis/test_variant_caller.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,781   copying build/lib/tests/analysis/test_read_preprocessor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,785   copying build/lib/tests/analysis/test_seq_utils.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,787   copying build/lib/tests/analysis/test_coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,791   copying build/lib/tests/analysis/test_read_editor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2023-09-28T07:18:34,794   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2023-09-28T07:18:34,796   creating build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,797   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,799   copying build/lib/tests/test_data/CBS_sim.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,801   copying build/lib/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,916   copying build/lib/tests/test_data/CBS_pEZY3_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,918   copying build/lib/tests/test_data/CBS.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,921   copying build/lib/tests/test_data/CBS_sim.vcf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,923   copying build/lib/tests/test_data/test_preprocess.sort.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,925   copying build/lib/tests/test_data/CBS_sim.R1.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,927   copying build/lib/tests/test_data/test_preprocess.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,929   copying build/lib/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,930   copying build/lib/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,932   copying build/lib/tests/test_data/CBS.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,934   copying build/lib/tests/test_data/test_preprocess.sort.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,935   copying build/lib/tests/test_data/test_preprocess.sam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,937   copying build/lib/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,939   copying build/lib/tests/test_data/CBS_sim_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,941   copying build/lib/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,943   copying build/lib/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:34,944   copying build/lib/tests/test_data/GRCh38.chr21.fa.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,111   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,113   copying build/lib/tests/test_data/PKNOX1.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,116   copying build/lib/tests/test_data/CBS_pEZY3.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,118   copying build/lib/tests/test_data/CBS_sim.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,119   copying build/lib/tests/test_data/CBS_pEZY3.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,121   copying build/lib/tests/test_data/CBS_pEZY3_targets.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,123   copying build/lib/tests/test_data/gencode.v29.annotation.gtf -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,126   copying build/lib/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,127   copying build/lib/tests/test_data/CBS_pEZY3.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,129   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,188   copying build/lib/tests/test_data/CBS_sim.R2.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,190   copying build/lib/tests/test_data/test_preprocess.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,192   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,194   copying build/lib/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2023-09-28T07:18:35,196   creating build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,197   copying build/lib/analysis/aligners.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,199   copying build/lib/analysis/read_preprocessor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,202   copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,204   copying build/lib/analysis/coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,207   copying build/lib/analysis/read_editor.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,210   copying build/lib/analysis/references.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,212   copying build/lib/analysis/variant_caller.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,215   copying build/lib/analysis/seq_utils.py -> build/bdist.linux-armv7l/wheel/analysis
2023-09-28T07:18:35,218   creating build/bdist.linux-armv7l/wheel/satmut_utils
2023-09-28T07:18:35,218   copying build/lib/satmut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-09-28T07:18:35,220   copying build/lib/satmut_utils/definitions.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-09-28T07:18:35,222   copying build/lib/satmut_utils/satmut_utils.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2023-09-28T07:18:35,224   creating build/bdist.linux-armv7l/wheel/scripts
2023-09-28T07:18:35,225   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2023-09-28T07:18:35,227   copying build/lib/scripts/run_bowtie2_aligner.py -> build/bdist.linux-armv7l/wheel/scripts
2023-09-28T07:18:35,229   copying build/lib/scripts/run_fastq_preprocessor.py -> build/bdist.linux-armv7l/wheel/scripts
2023-09-28T07:18:35,231   running install_egg_info
2023-09-28T07:18:35,242   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.1.0-py3.11.egg-info
2023-09-28T07:18:35,253   running install_scripts
2023-09-28T07:18:35,268   creating build/bdist.linux-armv7l/wheel/satmut_utils-1.1.0.dist-info/WHEEL
2023-09-28T07:18:35,270   creating '/tmp/pip-wheel-usctbbwl/.tmp-p6hznkix/satmut_utils-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-28T07:18:35,273   adding 'analysis/__init__.py'
2023-09-28T07:18:35,274   adding 'analysis/aligners.py'
2023-09-28T07:18:35,281   adding 'analysis/coordinate_mapper.py'
2023-09-28T07:18:35,286   adding 'analysis/read_editor.py'
2023-09-28T07:18:35,295   adding 'analysis/read_preprocessor.py'
2023-09-28T07:18:35,297   adding 'analysis/references.py'
2023-09-28T07:18:35,300   adding 'analysis/seq_utils.py'
2023-09-28T07:18:35,307   adding 'analysis/variant_caller.py'
2023-09-28T07:18:35,309   adding 'core_utils/__init__.py'
2023-09-28T07:18:35,311   adding 'core_utils/feature_file_utils.py'
2023-09-28T07:18:35,313   adding 'core_utils/file_utils.py'
2023-09-28T07:18:35,314   adding 'core_utils/string_utils.py'
2023-09-28T07:18:35,318   adding 'core_utils/vcf_utils.py'
2023-09-28T07:18:35,319   adding 'satmut_utils/__init__.py'
2023-09-28T07:18:35,321   adding 'satmut_utils/definitions.py'
2023-09-28T07:18:35,324   adding 'satmut_utils/satmut_utils.py'
2023-09-28T07:18:35,327   adding 'scripts/__init__.py'
2023-09-28T07:18:35,329   adding 'scripts/run_bowtie2_aligner.py'
2023-09-28T07:18:35,330   adding 'scripts/run_fastq_preprocessor.py'
2023-09-28T07:18:35,332   adding 'tests/__init__.py'
2023-09-28T07:18:35,334   adding 'tests/analysis/__init__.py'
2023-09-28T07:18:35,335   adding 'tests/analysis/test_aligners.py'
2023-09-28T07:18:35,338   adding 'tests/analysis/test_coordinate_mapper.py'
2023-09-28T07:18:35,342   adding 'tests/analysis/test_read_editor.py'
2023-09-28T07:18:35,347   adding 'tests/analysis/test_read_preprocessor.py'
2023-09-28T07:18:35,349   adding 'tests/analysis/test_references.py'
2023-09-28T07:18:35,352   adding 'tests/analysis/test_seq_utils.py'
2023-09-28T07:18:35,356   adding 'tests/analysis/test_variant_caller.py'
2023-09-28T07:18:35,358   adding 'tests/core_utils/__init__.py'
2023-09-28T07:18:35,360   adding 'tests/core_utils/test_feature_file_utils.py'
2023-09-28T07:18:35,361   adding 'tests/core_utils/test_file_utils.py'
2023-09-28T07:18:35,363   adding 'tests/core_utils/test_string_utils.py'
2023-09-28T07:18:35,365   adding 'tests/test_data/CBS.fa'
2023-09-28T07:18:35,367   adding 'tests/test_data/CBS.gff'
2023-09-28T07:18:35,371   adding 'tests/test_data/CBS_pEZY3.fa'
2023-09-28T07:18:35,464   adding 'tests/test_data/CBS_pEZY3.fa.1.bt2'
2023-09-28T07:18:35,499   adding 'tests/test_data/CBS_pEZY3.fa.2.bt2'
2023-09-28T07:18:35,500   adding 'tests/test_data/CBS_pEZY3.fa.3.bt2'
2023-09-28T07:18:35,502   adding 'tests/test_data/CBS_pEZY3.fa.4.bt2'
2023-09-28T07:18:35,503   adding 'tests/test_data/CBS_pEZY3.fa.fai'
2023-09-28T07:18:35,595   adding 'tests/test_data/CBS_pEZY3.fa.rev.1.bt2'
2023-09-28T07:18:35,630   adding 'tests/test_data/CBS_pEZY3.fa.rev.2.bt2'
2023-09-28T07:18:35,631   adding 'tests/test_data/CBS_pEZY3.gff'
2023-09-28T07:18:35,632   adding 'tests/test_data/CBS_pEZY3_primers.bed'
2023-09-28T07:18:35,634   adding 'tests/test_data/CBS_pEZY3_targets.bed'
2023-09-28T07:18:35,635   adding 'tests/test_data/CBS_sim.R1.fq.gz'
2023-09-28T07:18:35,636   adding 'tests/test_data/CBS_sim.R2.fq.gz'
2023-09-28T07:18:35,638   adding 'tests/test_data/CBS_sim.bam'
2023-09-28T07:18:35,639   adding 'tests/test_data/CBS_sim.bam.bai'
2023-09-28T07:18:35,640   adding 'tests/test_data/CBS_sim.vcf'
2023-09-28T07:18:35,641   adding 'tests/test_data/CBS_sim_primers.bed'
2023-09-28T07:18:36,904   adding 'tests/test_data/GRCh38.chr21.fa.gz'
2023-09-28T07:18:37,000   adding 'tests/test_data/PKNOX1.fa'
2023-09-28T07:18:37,001   adding 'tests/test_data/__init__.py'
2023-09-28T07:18:37,004   adding 'tests/test_data/appris_human_24_01_2019_selected.fa'
2023-09-28T07:18:37,006   adding 'tests/test_data/appris_human_24_01_2019_selected.fa.fai'
2023-09-28T07:18:37,007   adding 'tests/test_data/appris_human_v1_actual_regions_contigs.txt'
2023-09-28T07:18:37,008   adding 'tests/test_data/appris_human_v1_actual_regions_gene_ids.txt'
2023-09-28T07:18:37,009   adding 'tests/test_data/appris_human_v1_actual_regions_trx_ids.txt'
2023-09-28T07:18:37,010   adding 'tests/test_data/gencode.v29.annotation.gtf'
2023-09-28T07:18:37,012   adding 'tests/test_data/test_preprocess.bam'
2023-09-28T07:18:37,013   adding 'tests/test_data/test_preprocess.bam.bai'
2023-09-28T07:18:37,015   adding 'tests/test_data/test_preprocess.sam'
2023-09-28T07:18:37,016   adding 'tests/test_data/test_preprocess.sort.bam'
2023-09-28T07:18:37,017   adding 'tests/test_data/test_preprocess.sort.bam.bai'
2023-09-28T07:18:37,023   adding 'satmut_utils-1.1.0.dist-info/LICENSE.txt'
2023-09-28T07:18:37,025   adding 'satmut_utils-1.1.0.dist-info/METADATA'
2023-09-28T07:18:37,026   adding 'satmut_utils-1.1.0.dist-info/WHEEL'
2023-09-28T07:18:37,027   adding 'satmut_utils-1.1.0.dist-info/entry_points.txt'
2023-09-28T07:18:37,027   adding 'satmut_utils-1.1.0.dist-info/top_level.txt'
2023-09-28T07:18:37,029   adding 'satmut_utils-1.1.0.dist-info/RECORD'
2023-09-28T07:18:37,162   removing build/bdist.linux-armv7l/wheel
2023-09-28T07:18:37,277   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2023-09-28T07:18:37,567   Created wheel for satmut-utils: filename=satmut_utils-1.1.0-py3-none-any.whl size=12000925 sha256=5ddfee477c12473a423eb5f0bada11ea2267b234ff7c6f1bdcc8d2736ddb2498
2023-09-28T07:18:37,568   Stored in directory: /tmp/pip-ephem-wheel-cache-5135t_5v/wheels/ff/34/a9/f5cb4b4a86c63016290e96f4f6a89fa39257e2629fb33fa7e3
2023-09-28T07:18:37,585 Successfully built satmut-utils
2023-09-28T07:18:37,869 Removed build tracker: '/tmp/pip-build-tracker-pb74kt22'