2023-09-28T11:09:39,900 Created temporary directory: /tmp/pip-build-tracker-bm1tbw10 2023-09-28T11:09:39,901 Initialized build tracking at /tmp/pip-build-tracker-bm1tbw10 2023-09-28T11:09:39,902 Created build tracker: /tmp/pip-build-tracker-bm1tbw10 2023-09-28T11:09:39,902 Entered build tracker: /tmp/pip-build-tracker-bm1tbw10 2023-09-28T11:09:39,903 Created temporary directory: /tmp/pip-wheel-v2hoehs9 2023-09-28T11:09:39,906 Created temporary directory: /tmp/pip-ephem-wheel-cache-dcaazjna 2023-09-28T11:09:39,928 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-28T11:09:39,931 2 location(s) to search for versions of gqlib: 2023-09-28T11:09:39,931 * https://pypi.org/simple/gqlib/ 2023-09-28T11:09:39,931 * https://www.piwheels.org/simple/gqlib/ 2023-09-28T11:09:39,932 Fetching project page and analyzing links: https://pypi.org/simple/gqlib/ 2023-09-28T11:09:39,933 Getting page https://pypi.org/simple/gqlib/ 2023-09-28T11:09:39,934 Found index url https://pypi.org/simple/ 2023-09-28T11:09:40,189 Fetched page https://pypi.org/simple/gqlib/ as application/vnd.pypi.simple.v1+json 2023-09-28T11:09:40,191 Found link https://files.pythonhosted.org/packages/a5/26/1fb85708574f429a67cf7ebd09819706893e408c693c867248098c8b6bb2/gqlib-2.9.9.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.9.9.3 2023-09-28T11:09:40,192 Found link https://files.pythonhosted.org/packages/0d/5a/694f5a2ea4ee7048c32cdd2cb69c7f4835e5d8a43328f762434b770b7cfb/gqlib-2.10.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.10.0 2023-09-28T11:09:40,193 Found link https://files.pythonhosted.org/packages/18/a3/f599a42c49499622e4dddc2d7b9c699a728dee1ccead4bac6055ae72d9c1/gqlib-2.12.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.1 2023-09-28T11:09:40,193 Found link https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.2 2023-09-28T11:09:40,194 Found link https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.13.0 2023-09-28T11:09:40,194 Found link https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.0 2023-09-28T11:09:40,195 Found link https://files.pythonhosted.org/packages/b9/a3/7066b734916fa72d91a1f66b8813956a942a6ab87f4911741223f3535d6c/gqlib-2.14.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.1 2023-09-28T11:09:40,196 Found link https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.2 2023-09-28T11:09:40,197 Found link https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.3 2023-09-28T11:09:40,197 Fetching project page and analyzing links: https://www.piwheels.org/simple/gqlib/ 2023-09-28T11:09:40,198 Getting page https://www.piwheels.org/simple/gqlib/ 2023-09-28T11:09:40,199 Found index url https://www.piwheels.org/simple/ 2023-09-28T11:09:40,369 Fetched page https://www.piwheels.org/simple/gqlib/ as text/html 2023-09-28T11:09:40,371 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.13.0-py3-none-any.whl#sha256=dfafe4e4b53c04fb1a60312eb30a983e8031ffc28ce6891f90fb0b4cdf99de0f (from https://www.piwheels.org/simple/gqlib/) 2023-09-28T11:09:40,372 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.2-py3-none-any.whl#sha256=0f647a2d442d1b4b2c523c7e2193362bfe81d4aba376bf2bbece35717eebd174 (from https://www.piwheels.org/simple/gqlib/) 2023-09-28T11:09:40,373 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.1-py3-none-any.whl#sha256=f1fb244343d7ea0235837d6a1bd7c60c95f6755b1a2b831691e04f851b4e551b (from https://www.piwheels.org/simple/gqlib/) 2023-09-28T11:09:40,373 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.10.0-py3-none-any.whl#sha256=393b7dc20a4d91ae690b4799f687ff2522c749d97cad0f98bf305f2817b1c0ea (from https://www.piwheels.org/simple/gqlib/) 2023-09-28T11:09:40,374 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.9.9.3-py3-none-any.whl#sha256=2bd1fb961af8b28506ae8b437d5b9e7a5a5f0f88b956679b48a458e056fe35e9 (from https://www.piwheels.org/simple/gqlib/) 2023-09-28T11:09:40,374 Skipping link: not a file: https://www.piwheels.org/simple/gqlib/ 2023-09-28T11:09:40,375 Skipping link: not a file: https://pypi.org/simple/gqlib/ 2023-09-28T11:09:40,394 Given no hashes to check 1 links for project 'gqlib': discarding no candidates 2023-09-28T11:09:40,411 Collecting gqlib==2.14.0 2023-09-28T11:09:40,414 Created temporary directory: /tmp/pip-unpack-psa9cr_4 2023-09-28T11:09:40,552 Downloading gqlib-2.14.0.tar.gz (104 kB) 2023-09-28T11:09:40,855 Added gqlib==2.14.0 from https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz to build tracker '/tmp/pip-build-tracker-bm1tbw10' 2023-09-28T11:09:40,856 Running setup.py (path:/tmp/pip-wheel-v2hoehs9/gqlib_2adc3d693580461a811fa4e1b7a7b0b3/setup.py) egg_info for package gqlib 2023-09-28T11:09:40,857 Created temporary directory: /tmp/pip-pip-egg-info-bidg3zyy 2023-09-28T11:09:40,858 Preparing metadata (setup.py): started 2023-09-28T11:09:40,859 Running command python setup.py egg_info 2023-09-28T11:09:41,335 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T11:09:41,335 !! 2023-09-28T11:09:41,337 ******************************************************************************** 2023-09-28T11:09:41,337 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T11:09:41,338 versions. Please use the underscore name 'description_file' instead. 2023-09-28T11:09:41,339 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T11:09:41,340 calls to avoid build errors in the future. 2023-09-28T11:09:41,341 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T11:09:41,341 ******************************************************************************** 2023-09-28T11:09:41,342 !! 2023-09-28T11:09:41,343 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T11:09:41,844 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T11:09:41,845 !! 2023-09-28T11:09:41,846 ******************************************************************************** 2023-09-28T11:09:41,846 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T11:09:41,847 versions. Please use the underscore name 'description_file' instead. 2023-09-28T11:09:41,848 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T11:09:41,849 calls to avoid build errors in the future. 2023-09-28T11:09:41,850 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T11:09:41,850 ******************************************************************************** 2023-09-28T11:09:41,851 !! 2023-09-28T11:09:41,852 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T11:09:41,882 running egg_info 2023-09-28T11:09:41,884 creating /tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info 2023-09-28T11:09:41,908 writing /tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/PKG-INFO 2023-09-28T11:09:41,911 writing dependency_links to /tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/dependency_links.txt 2023-09-28T11:09:41,913 writing requirements to /tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/requires.txt 2023-09-28T11:09:41,914 writing top-level names to /tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/top_level.txt 2023-09-28T11:09:41,915 writing manifest file '/tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/SOURCES.txt' 2023-09-28T11:09:42,004 reading manifest file '/tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/SOURCES.txt' 2023-09-28T11:09:42,005 reading manifest template 'MANIFEST.in' 2023-09-28T11:09:42,006 adding license file 'LICENSE' 2023-09-28T11:09:42,011 writing manifest file '/tmp/pip-pip-egg-info-bidg3zyy/gqlib.egg-info/SOURCES.txt' 2023-09-28T11:09:42,120 Preparing metadata (setup.py): finished with status 'done' 2023-09-28T11:09:42,124 Source in /tmp/pip-wheel-v2hoehs9/gqlib_2adc3d693580461a811fa4e1b7a7b0b3 has version 2.14.0, which satisfies requirement gqlib==2.14.0 from https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz 2023-09-28T11:09:42,125 Removed gqlib==2.14.0 from https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz from build tracker '/tmp/pip-build-tracker-bm1tbw10' 2023-09-28T11:09:42,129 Created temporary directory: /tmp/pip-unpack-gwksa7u0 2023-09-28T11:09:42,130 Created temporary directory: /tmp/pip-unpack-shdgcvb1 2023-09-28T11:09:42,137 Building wheels for collected packages: gqlib 2023-09-28T11:09:42,141 Created temporary directory: /tmp/pip-wheel-wkqydbe4 2023-09-28T11:09:42,141 Building wheel for gqlib (setup.py): started 2023-09-28T11:09:42,142 Destination directory: /tmp/pip-wheel-wkqydbe4 2023-09-28T11:09:42,143 Running command python setup.py bdist_wheel 2023-09-28T11:09:42,590 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T11:09:42,590 !! 2023-09-28T11:09:42,592 ******************************************************************************** 2023-09-28T11:09:42,592 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T11:09:42,593 versions. Please use the underscore name 'description_file' instead. 2023-09-28T11:09:42,594 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T11:09:42,595 calls to avoid build errors in the future. 2023-09-28T11:09:42,596 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T11:09:42,597 ******************************************************************************** 2023-09-28T11:09:42,598 !! 2023-09-28T11:09:42,599 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T11:09:43,110 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T11:09:43,111 !! 2023-09-28T11:09:43,112 ******************************************************************************** 2023-09-28T11:09:43,112 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T11:09:43,113 versions. Please use the underscore name 'description_file' instead. 2023-09-28T11:09:43,114 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T11:09:43,115 calls to avoid build errors in the future. 2023-09-28T11:09:43,116 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T11:09:43,116 ******************************************************************************** 2023-09-28T11:09:43,118 !! 2023-09-28T11:09:43,118 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T11:09:43,143 running bdist_wheel 2023-09-28T11:09:43,235 running build 2023-09-28T11:09:43,236 running build_py 2023-09-28T11:09:43,263 creating build 2023-09-28T11:09:43,263 creating build/lib 2023-09-28T11:09:43,264 creating build/lib/gqlib_oldx 2023-09-28T11:09:43,266 copying gqlib_oldx/handle_args.py -> build/lib/gqlib_oldx 2023-09-28T11:09:43,268 copying gqlib_oldx/__init__.py -> build/lib/gqlib_oldx 2023-09-28T11:09:43,270 copying gqlib_oldx/__main__.py -> build/lib/gqlib_oldx 2023-09-28T11:09:43,272 creating build/lib/gqlib_old 2023-09-28T11:09:43,273 copying gqlib_old/handle_args.py -> build/lib/gqlib_old 2023-09-28T11:09:43,275 copying gqlib_old/__init__.py -> build/lib/gqlib_old 2023-09-28T11:09:43,276 copying gqlib_old/__main__.py -> build/lib/gqlib_old 2023-09-28T11:09:43,279 creating build/lib/gqlib 2023-09-28T11:09:43,280 copying gqlib/handle_args.py -> build/lib/gqlib 2023-09-28T11:09:43,282 copying gqlib/__init__.py -> build/lib/gqlib 2023-09-28T11:09:43,284 copying gqlib/__main__.py -> build/lib/gqlib 2023-09-28T11:09:43,286 creating build/lib/gqlib_oldx/profilers 2023-09-28T11:09:43,287 copying gqlib_oldx/profilers/__init__.py -> build/lib/gqlib_oldx/profilers 2023-09-28T11:09:43,289 copying gqlib_oldx/profilers/feature_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-28T11:09:43,291 copying gqlib_oldx/profilers/region_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-28T11:09:43,293 copying gqlib_oldx/profilers/gene_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-28T11:09:43,295 creating build/lib/gqlib_oldx/annotation 2023-09-28T11:09:43,296 copying gqlib_oldx/annotation/count_writer.py -> build/lib/gqlib_oldx/annotation 2023-09-28T11:09:43,298 copying gqlib_oldx/annotation/__init__.py -> build/lib/gqlib_oldx/annotation 2023-09-28T11:09:43,299 copying gqlib_oldx/annotation/count_annotator.py -> build/lib/gqlib_oldx/annotation 2023-09-28T11:09:43,302 creating build/lib/gqlib_oldx/db 2023-09-28T11:09:43,303 copying gqlib_oldx/db/db_import.py -> build/lib/gqlib_oldx/db 2023-09-28T11:09:43,305 copying gqlib_oldx/db/__init__.py -> build/lib/gqlib_oldx/db 2023-09-28T11:09:43,307 copying gqlib_oldx/db/gff_dbm.py -> build/lib/gqlib_oldx/db 2023-09-28T11:09:43,309 copying gqlib_oldx/db/annotation_db.py -> build/lib/gqlib_oldx/db 2023-09-28T11:09:43,311 copying gqlib_oldx/db/database.py -> build/lib/gqlib_oldx/db 2023-09-28T11:09:43,313 creating build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,314 copying gqlib_oldx/counters/alignment_counter.py -> build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,316 copying gqlib_oldx/counters/__init__.py -> build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,317 copying gqlib_oldx/counters/region_counter.py -> build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,319 copying gqlib_oldx/counters/seq_counter.py -> build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,321 copying gqlib_oldx/counters/count_manager.py -> build/lib/gqlib_oldx/counters 2023-09-28T11:09:43,324 creating build/lib/gqlib_oldx/alignment 2023-09-28T11:09:43,325 copying gqlib_oldx/alignment/pysam_alignment_processor.py -> build/lib/gqlib_oldx/alignment 2023-09-28T11:09:43,327 copying gqlib_oldx/alignment/__init__.py -> build/lib/gqlib_oldx/alignment 2023-09-28T11:09:43,328 copying gqlib_oldx/alignment/bamreader.py -> build/lib/gqlib_oldx/alignment 2023-09-28T11:09:43,331 copying gqlib_oldx/alignment/aln_group.py -> build/lib/gqlib_oldx/alignment 2023-09-28T11:09:43,333 creating build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,334 copying gqlib_oldx/bin/collate_counts.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,336 copying gqlib_oldx/bin/build_domain_database.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,339 copying gqlib_oldx/bin/collate_studies.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,340 copying gqlib_oldx/bin/build_gene_database.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,342 copying gqlib_oldx/bin/__init__.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,344 copying gqlib_oldx/bin/build_bed_database.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,346 copying gqlib_oldx/bin/build_custom_database.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,348 copying gqlib_oldx/bin/split_table.py -> build/lib/gqlib_oldx/bin 2023-09-28T11:09:43,350 creating build/lib/gqlib_oldx/db/models 2023-09-28T11:09:43,351 copying gqlib_oldx/db/models/meta.py -> build/lib/gqlib_oldx/db/models 2023-09-28T11:09:43,353 copying gqlib_oldx/db/models/__init__.py -> build/lib/gqlib_oldx/db/models 2023-09-28T11:09:43,354 copying gqlib_oldx/db/models/db.py -> build/lib/gqlib_oldx/db/models 2023-09-28T11:09:43,356 creating build/lib/gqlib_old/profilers 2023-09-28T11:09:43,357 copying gqlib_old/profilers/__init__.py -> build/lib/gqlib_old/profilers 2023-09-28T11:09:43,359 copying gqlib_old/profilers/feature_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-28T11:09:43,361 copying gqlib_old/profilers/region_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-28T11:09:43,363 copying gqlib_old/profilers/gene_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-28T11:09:43,365 creating build/lib/gqlib_old/annotation 2023-09-28T11:09:43,366 copying gqlib_old/annotation/count_writer.py -> build/lib/gqlib_old/annotation 2023-09-28T11:09:43,368 copying gqlib_old/annotation/__init__.py -> build/lib/gqlib_old/annotation 2023-09-28T11:09:43,370 copying gqlib_old/annotation/count_annotator.py -> build/lib/gqlib_old/annotation 2023-09-28T11:09:43,372 creating build/lib/gqlib_old/db 2023-09-28T11:09:43,373 copying gqlib_old/db/db_import.py -> build/lib/gqlib_old/db 2023-09-28T11:09:43,375 copying gqlib_old/db/__init__.py -> build/lib/gqlib_old/db 2023-09-28T11:09:43,377 copying gqlib_old/db/gff_dbm.py -> build/lib/gqlib_old/db 2023-09-28T11:09:43,379 copying gqlib_old/db/annotation_db.py -> build/lib/gqlib_old/db 2023-09-28T11:09:43,381 copying gqlib_old/db/database.py -> build/lib/gqlib_old/db 2023-09-28T11:09:43,383 creating build/lib/gqlib_old/counters 2023-09-28T11:09:43,384 copying gqlib_old/counters/alignment_counter.py -> build/lib/gqlib_old/counters 2023-09-28T11:09:43,385 copying gqlib_old/counters/__init__.py -> build/lib/gqlib_old/counters 2023-09-28T11:09:43,387 copying gqlib_old/counters/region_counter.py -> build/lib/gqlib_old/counters 2023-09-28T11:09:43,389 copying gqlib_old/counters/seq_counter.py -> build/lib/gqlib_old/counters 2023-09-28T11:09:43,391 copying gqlib_old/counters/count_manager.py -> build/lib/gqlib_old/counters 2023-09-28T11:09:43,393 creating build/lib/gqlib_old/alignment 2023-09-28T11:09:43,394 copying gqlib_old/alignment/pysam_alignment_processor.py -> build/lib/gqlib_old/alignment 2023-09-28T11:09:43,396 copying gqlib_old/alignment/__init__.py -> build/lib/gqlib_old/alignment 2023-09-28T11:09:43,398 copying gqlib_old/alignment/bamreader.py -> build/lib/gqlib_old/alignment 2023-09-28T11:09:43,400 copying gqlib_old/alignment/aln_group.py -> build/lib/gqlib_old/alignment 2023-09-28T11:09:43,403 creating build/lib/gqlib_old/bin 2023-09-28T11:09:43,404 copying gqlib_old/bin/collate_counts.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,406 copying gqlib_old/bin/build_domain_database.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,408 copying gqlib_old/bin/db_collate.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,410 copying gqlib_old/bin/collate_studies.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,412 copying gqlib_old/bin/build_gene_database.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,414 copying gqlib_old/bin/__init__.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,415 copying gqlib_old/bin/build_pg3_database.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,418 copying gqlib_old/bin/build_bed_database.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,420 copying gqlib_old/bin/build_custom_database.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,422 copying gqlib_old/bin/split_table.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,424 copying gqlib_old/bin/db_collate2.py -> build/lib/gqlib_old/bin 2023-09-28T11:09:43,426 creating build/lib/gqlib_old/db/models 2023-09-28T11:09:43,427 copying gqlib_old/db/models/meta.py -> build/lib/gqlib_old/db/models 2023-09-28T11:09:43,429 copying gqlib_old/db/models/__init__.py -> build/lib/gqlib_old/db/models 2023-09-28T11:09:43,431 copying gqlib_old/db/models/db.py -> build/lib/gqlib_old/db/models 2023-09-28T11:09:43,433 creating build/lib/gqlib/ui 2023-09-28T11:09:43,434 copying gqlib/ui/__init__.py -> build/lib/gqlib/ui 2023-09-28T11:09:43,435 copying gqlib/ui/validation.py -> build/lib/gqlib/ui 2023-09-28T11:09:43,437 creating build/lib/gqlib/profilers 2023-09-28T11:09:43,438 copying gqlib/profilers/__init__.py -> build/lib/gqlib/profilers 2023-09-28T11:09:43,440 copying gqlib/profilers/feature_quantifier.py -> build/lib/gqlib/profilers 2023-09-28T11:09:43,443 copying gqlib/profilers/region_quantifier.py -> build/lib/gqlib/profilers 2023-09-28T11:09:43,444 copying gqlib/profilers/gene_quantifier.py -> build/lib/gqlib/profilers 2023-09-28T11:09:43,447 creating build/lib/gqlib/annotation 2023-09-28T11:09:43,447 copying gqlib/annotation/count_writer.py -> build/lib/gqlib/annotation 2023-09-28T11:09:43,450 copying gqlib/annotation/__init__.py -> build/lib/gqlib/annotation 2023-09-28T11:09:43,451 copying gqlib/annotation/count_annotator.py -> build/lib/gqlib/annotation 2023-09-28T11:09:43,454 creating build/lib/gqlib/db 2023-09-28T11:09:43,455 copying gqlib/db/db_import.py -> build/lib/gqlib/db 2023-09-28T11:09:43,457 copying gqlib/db/__init__.py -> build/lib/gqlib/db 2023-09-28T11:09:43,459 copying gqlib/db/gff_dbm.py -> build/lib/gqlib/db 2023-09-28T11:09:43,461 copying gqlib/db/annotation_db.py -> build/lib/gqlib/db 2023-09-28T11:09:43,463 copying gqlib/db/database.py -> build/lib/gqlib/db 2023-09-28T11:09:43,465 creating build/lib/gqlib/counters 2023-09-28T11:09:43,466 copying gqlib/counters/alignment_counter.py -> build/lib/gqlib/counters 2023-09-28T11:09:43,468 copying gqlib/counters/__init__.py -> build/lib/gqlib/counters 2023-09-28T11:09:43,470 copying gqlib/counters/region_counter.py -> build/lib/gqlib/counters 2023-09-28T11:09:43,471 copying gqlib/counters/seq_counter.py -> build/lib/gqlib/counters 2023-09-28T11:09:43,473 copying gqlib/counters/count_manager.py -> build/lib/gqlib/counters 2023-09-28T11:09:43,476 creating build/lib/gqlib/runners 2023-09-28T11:09:43,477 copying gqlib/runners/__init__.py -> build/lib/gqlib/runners 2023-09-28T11:09:43,478 copying gqlib/runners/alignment_runner.py -> build/lib/gqlib/runners 2023-09-28T11:09:43,481 creating build/lib/gqlib/alignment 2023-09-28T11:09:43,482 copying gqlib/alignment/pysam_alignment_processor.py -> build/lib/gqlib/alignment 2023-09-28T11:09:43,483 copying gqlib/alignment/__init__.py -> build/lib/gqlib/alignment 2023-09-28T11:09:43,485 copying gqlib/alignment/bamreader.py -> build/lib/gqlib/alignment 2023-09-28T11:09:43,488 copying gqlib/alignment/aln_group.py -> build/lib/gqlib/alignment 2023-09-28T11:09:43,490 creating build/lib/gqlib/bin 2023-09-28T11:09:43,491 copying gqlib/bin/collate_counts.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,493 copying gqlib/bin/build_domain_database.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,495 copying gqlib/bin/db_collate.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,498 copying gqlib/bin/collate_studies.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,500 copying gqlib/bin/build_gene_database.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,502 copying gqlib/bin/__init__.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,504 copying gqlib/bin/build_pg3_database.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,506 copying gqlib/bin/build_bed_database.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,509 copying gqlib/bin/build_custom_database.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,511 copying gqlib/bin/split_table.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,513 copying gqlib/bin/db_collate2.py -> build/lib/gqlib/bin 2023-09-28T11:09:43,515 creating build/lib/gqlib/db/models 2023-09-28T11:09:43,516 copying gqlib/db/models/meta.py -> build/lib/gqlib/db/models 2023-09-28T11:09:43,518 copying gqlib/db/models/__init__.py -> build/lib/gqlib/db/models 2023-09-28T11:09:43,519 copying gqlib/db/models/db.py -> build/lib/gqlib/db/models 2023-09-28T11:09:43,521 running egg_info 2023-09-28T11:09:43,577 writing gqlib.egg-info/PKG-INFO 2023-09-28T11:09:43,579 writing dependency_links to gqlib.egg-info/dependency_links.txt 2023-09-28T11:09:43,581 writing requirements to gqlib.egg-info/requires.txt 2023-09-28T11:09:43,582 writing top-level names to gqlib.egg-info/top_level.txt 2023-09-28T11:09:43,619 reading manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-28T11:09:43,624 reading manifest template 'MANIFEST.in' 2023-09-28T11:09:43,625 adding license file 'LICENSE' 2023-09-28T11:09:43,631 writing manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-28T11:09:43,667 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-28T11:09:43,668 !! 2023-09-28T11:09:43,669 ******************************************************************************** 2023-09-28T11:09:43,669 Please avoid running ``setup.py`` directly. 2023-09-28T11:09:43,670 Instead, use pypa/build, pypa/installer or other 2023-09-28T11:09:43,670 standards-based tools. 2023-09-28T11:09:43,671 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-28T11:09:43,672 ******************************************************************************** 2023-09-28T11:09:43,673 !! 2023-09-28T11:09:43,673 self.initialize_options() 2023-09-28T11:09:43,693 installing to build/bdist.linux-armv7l/wheel 2023-09-28T11:09:43,694 running install 2023-09-28T11:09:43,717 running install_lib 2023-09-28T11:09:43,741 creating build/bdist.linux-armv7l 2023-09-28T11:09:43,742 creating build/bdist.linux-armv7l/wheel 2023-09-28T11:09:43,743 creating build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-28T11:09:43,745 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-28T11:09:43,746 copying build/lib/gqlib_oldx/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-28T11:09:43,747 copying build/lib/gqlib_oldx/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-28T11:09:43,750 copying build/lib/gqlib_oldx/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-28T11:09:43,751 copying build/lib/gqlib_oldx/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-28T11:09:43,754 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-28T11:09:43,755 copying build/lib/gqlib_oldx/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-28T11:09:43,757 copying build/lib/gqlib_oldx/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-28T11:09:43,759 copying build/lib/gqlib_oldx/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-28T11:09:43,761 copying build/lib/gqlib_oldx/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-28T11:09:43,763 copying build/lib/gqlib_oldx/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-28T11:09:43,765 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,766 copying build/lib/gqlib_oldx/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,768 copying build/lib/gqlib_oldx/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,771 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-28T11:09:43,772 copying build/lib/gqlib_oldx/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-28T11:09:43,774 copying build/lib/gqlib_oldx/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-28T11:09:43,775 copying build/lib/gqlib_oldx/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-28T11:09:43,777 copying build/lib/gqlib_oldx/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,779 copying build/lib/gqlib_oldx/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,781 copying build/lib/gqlib_oldx/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-28T11:09:43,783 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,784 copying build/lib/gqlib_oldx/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,785 copying build/lib/gqlib_oldx/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,787 copying build/lib/gqlib_oldx/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,793 copying build/lib/gqlib_oldx/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,794 copying build/lib/gqlib_oldx/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-28T11:09:43,796 copying build/lib/gqlib_oldx/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-28T11:09:43,798 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-28T11:09:43,799 copying build/lib/gqlib_oldx/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-28T11:09:43,801 copying build/lib/gqlib_oldx/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-28T11:09:43,803 copying build/lib/gqlib_oldx/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-28T11:09:43,805 copying build/lib/gqlib_oldx/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-28T11:09:43,808 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,809 copying build/lib/gqlib_oldx/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,811 copying build/lib/gqlib_oldx/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,813 copying build/lib/gqlib_oldx/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,815 copying build/lib/gqlib_oldx/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,817 copying build/lib/gqlib_oldx/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,819 copying build/lib/gqlib_oldx/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,821 copying build/lib/gqlib_oldx/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,823 copying build/lib/gqlib_oldx/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-28T11:09:43,825 creating build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-28T11:09:43,827 creating build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-28T11:09:43,828 copying build/lib/gqlib_old/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-28T11:09:43,830 copying build/lib/gqlib_old/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-28T11:09:43,832 copying build/lib/gqlib_old/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-28T11:09:43,834 copying build/lib/gqlib_old/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-28T11:09:43,836 creating build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-28T11:09:43,837 copying build/lib/gqlib_old/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-28T11:09:43,839 copying build/lib/gqlib_old/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-28T11:09:43,841 copying build/lib/gqlib_old/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-28T11:09:43,843 copying build/lib/gqlib_old/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-28T11:09:43,845 copying build/lib/gqlib_old/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-28T11:09:43,847 creating build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,848 copying build/lib/gqlib_old/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,850 copying build/lib/gqlib_old/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,852 creating build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-28T11:09:43,853 copying build/lib/gqlib_old/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-28T11:09:43,855 copying build/lib/gqlib_old/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-28T11:09:43,856 copying build/lib/gqlib_old/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-28T11:09:43,858 copying build/lib/gqlib_old/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,860 copying build/lib/gqlib_old/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,862 copying build/lib/gqlib_old/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-28T11:09:43,864 creating build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,865 copying build/lib/gqlib_old/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,867 copying build/lib/gqlib_old/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,868 copying build/lib/gqlib_old/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,870 copying build/lib/gqlib_old/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,872 copying build/lib/gqlib_old/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-28T11:09:43,874 copying build/lib/gqlib_old/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-28T11:09:43,877 creating build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-28T11:09:43,877 copying build/lib/gqlib_old/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-28T11:09:43,879 copying build/lib/gqlib_old/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-28T11:09:43,881 copying build/lib/gqlib_old/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-28T11:09:43,884 copying build/lib/gqlib_old/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-28T11:09:43,886 creating build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,887 copying build/lib/gqlib_old/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,889 copying build/lib/gqlib_old/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,893 copying build/lib/gqlib_old/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,895 copying build/lib/gqlib_old/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,897 copying build/lib/gqlib_old/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,899 copying build/lib/gqlib_old/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,901 copying build/lib/gqlib_old/bin/build_pg3_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,903 copying build/lib/gqlib_old/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,905 copying build/lib/gqlib_old/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,908 copying build/lib/gqlib_old/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,909 copying build/lib/gqlib_old/bin/db_collate2.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-28T11:09:43,912 creating build/bdist.linux-armv7l/wheel/gqlib 2023-09-28T11:09:43,913 creating build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-28T11:09:43,914 copying build/lib/gqlib/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-28T11:09:43,916 copying build/lib/gqlib/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-28T11:09:43,918 creating build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-28T11:09:43,918 copying build/lib/gqlib/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-28T11:09:43,920 copying build/lib/gqlib/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-28T11:09:43,923 copying build/lib/gqlib/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-28T11:09:43,924 copying build/lib/gqlib/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-28T11:09:43,927 creating build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-28T11:09:43,927 copying build/lib/gqlib/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-28T11:09:43,930 copying build/lib/gqlib/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-28T11:09:43,932 copying build/lib/gqlib/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-28T11:09:43,934 copying build/lib/gqlib/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-28T11:09:43,937 copying build/lib/gqlib/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-28T11:09:43,939 creating build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,940 copying build/lib/gqlib/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,943 copying build/lib/gqlib/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,945 creating build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-28T11:09:43,946 copying build/lib/gqlib/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-28T11:09:43,948 copying build/lib/gqlib/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-28T11:09:43,949 copying build/lib/gqlib/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-28T11:09:43,951 copying build/lib/gqlib/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,953 copying build/lib/gqlib/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,956 copying build/lib/gqlib/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-28T11:09:43,958 creating build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,959 copying build/lib/gqlib/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,961 copying build/lib/gqlib/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,962 copying build/lib/gqlib/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,964 copying build/lib/gqlib/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,966 copying build/lib/gqlib/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-28T11:09:43,968 copying build/lib/gqlib/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-28T11:09:43,971 creating build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-28T11:09:43,972 copying build/lib/gqlib/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-28T11:09:43,973 copying build/lib/gqlib/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-28T11:09:43,976 creating build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-28T11:09:43,977 copying build/lib/gqlib/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-28T11:09:43,979 copying build/lib/gqlib/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-28T11:09:43,980 copying build/lib/gqlib/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-28T11:09:43,983 copying build/lib/gqlib/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-28T11:09:43,985 creating build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,986 copying build/lib/gqlib/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,989 copying build/lib/gqlib/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,991 copying build/lib/gqlib/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,993 copying build/lib/gqlib/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,995 copying build/lib/gqlib/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,997 copying build/lib/gqlib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:43,998 copying build/lib/gqlib/bin/build_pg3_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:44,000 copying build/lib/gqlib/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:44,002 copying build/lib/gqlib/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:44,004 copying build/lib/gqlib/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:44,006 copying build/lib/gqlib/bin/db_collate2.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-28T11:09:44,008 running install_egg_info 2023-09-28T11:09:44,037 Copying gqlib.egg-info to build/bdist.linux-armv7l/wheel/gqlib-2.14.0-py3.11.egg-info 2023-09-28T11:09:44,048 running install_scripts 2023-09-28T11:09:44,061 creating build/bdist.linux-armv7l/wheel/gqlib-2.14.0.dist-info/WHEEL 2023-09-28T11:09:44,063 creating '/tmp/pip-wheel-wkqydbe4/gqlib-2.14.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-28T11:09:44,065 adding 'gqlib/__init__.py' 2023-09-28T11:09:44,067 adding 'gqlib/__main__.py' 2023-09-28T11:09:44,069 adding 'gqlib/handle_args.py' 2023-09-28T11:09:44,070 adding 'gqlib/alignment/__init__.py' 2023-09-28T11:09:44,072 adding 'gqlib/alignment/aln_group.py' 2023-09-28T11:09:44,074 adding 'gqlib/alignment/bamreader.py' 2023-09-28T11:09:44,076 adding 'gqlib/alignment/pysam_alignment_processor.py' 2023-09-28T11:09:44,078 adding 'gqlib/annotation/__init__.py' 2023-09-28T11:09:44,080 adding 'gqlib/annotation/count_annotator.py' 2023-09-28T11:09:44,081 adding 'gqlib/annotation/count_writer.py' 2023-09-28T11:09:44,083 adding 'gqlib/bin/__init__.py' 2023-09-28T11:09:44,085 adding 'gqlib/bin/build_bed_database.py' 2023-09-28T11:09:44,086 adding 'gqlib/bin/build_custom_database.py' 2023-09-28T11:09:44,088 adding 'gqlib/bin/build_domain_database.py' 2023-09-28T11:09:44,089 adding 'gqlib/bin/build_gene_database.py' 2023-09-28T11:09:44,091 adding 'gqlib/bin/build_pg3_database.py' 2023-09-28T11:09:44,093 adding 'gqlib/bin/collate_counts.py' 2023-09-28T11:09:44,094 adding 'gqlib/bin/collate_studies.py' 2023-09-28T11:09:44,096 adding 'gqlib/bin/db_collate.py' 2023-09-28T11:09:44,097 adding 'gqlib/bin/db_collate2.py' 2023-09-28T11:09:44,098 adding 'gqlib/bin/split_table.py' 2023-09-28T11:09:44,100 adding 'gqlib/counters/__init__.py' 2023-09-28T11:09:44,101 adding 'gqlib/counters/alignment_counter.py' 2023-09-28T11:09:44,103 adding 'gqlib/counters/count_manager.py' 2023-09-28T11:09:44,104 adding 'gqlib/counters/region_counter.py' 2023-09-28T11:09:44,105 adding 'gqlib/counters/seq_counter.py' 2023-09-28T11:09:44,107 adding 'gqlib/db/__init__.py' 2023-09-28T11:09:44,109 adding 'gqlib/db/annotation_db.py' 2023-09-28T11:09:44,110 adding 'gqlib/db/database.py' 2023-09-28T11:09:44,112 adding 'gqlib/db/db_import.py' 2023-09-28T11:09:44,113 adding 'gqlib/db/gff_dbm.py' 2023-09-28T11:09:44,115 adding 'gqlib/db/models/__init__.py' 2023-09-28T11:09:44,116 adding 'gqlib/db/models/db.py' 2023-09-28T11:09:44,117 adding 'gqlib/db/models/meta.py' 2023-09-28T11:09:44,118 adding 'gqlib/profilers/__init__.py' 2023-09-28T11:09:44,120 adding 'gqlib/profilers/feature_quantifier.py' 2023-09-28T11:09:44,121 adding 'gqlib/profilers/gene_quantifier.py' 2023-09-28T11:09:44,123 adding 'gqlib/profilers/region_quantifier.py' 2023-09-28T11:09:44,124 adding 'gqlib/runners/__init__.py' 2023-09-28T11:09:44,125 adding 'gqlib/runners/alignment_runner.py' 2023-09-28T11:09:44,127 adding 'gqlib/ui/__init__.py' 2023-09-28T11:09:44,128 adding 'gqlib/ui/validation.py' 2023-09-28T11:09:44,130 adding 'gqlib_old/__init__.py' 2023-09-28T11:09:44,132 adding 'gqlib_old/__main__.py' 2023-09-28T11:09:44,134 adding 'gqlib_old/handle_args.py' 2023-09-28T11:09:44,135 adding 'gqlib_old/alignment/__init__.py' 2023-09-28T11:09:44,137 adding 'gqlib_old/alignment/aln_group.py' 2023-09-28T11:09:44,139 adding 'gqlib_old/alignment/bamreader.py' 2023-09-28T11:09:44,140 adding 'gqlib_old/alignment/pysam_alignment_processor.py' 2023-09-28T11:09:44,142 adding 'gqlib_old/annotation/__init__.py' 2023-09-28T11:09:44,144 adding 'gqlib_old/annotation/count_annotator.py' 2023-09-28T11:09:44,145 adding 'gqlib_old/annotation/count_writer.py' 2023-09-28T11:09:44,147 adding 'gqlib_old/bin/__init__.py' 2023-09-28T11:09:44,149 adding 'gqlib_old/bin/build_bed_database.py' 2023-09-28T11:09:44,150 adding 'gqlib_old/bin/build_custom_database.py' 2023-09-28T11:09:44,152 adding 'gqlib_old/bin/build_domain_database.py' 2023-09-28T11:09:44,153 adding 'gqlib_old/bin/build_gene_database.py' 2023-09-28T11:09:44,155 adding 'gqlib_old/bin/build_pg3_database.py' 2023-09-28T11:09:44,156 adding 'gqlib_old/bin/collate_counts.py' 2023-09-28T11:09:44,158 adding 'gqlib_old/bin/collate_studies.py' 2023-09-28T11:09:44,159 adding 'gqlib_old/bin/db_collate.py' 2023-09-28T11:09:44,161 adding 'gqlib_old/bin/db_collate2.py' 2023-09-28T11:09:44,162 adding 'gqlib_old/bin/split_table.py' 2023-09-28T11:09:44,163 adding 'gqlib_old/counters/__init__.py' 2023-09-28T11:09:44,165 adding 'gqlib_old/counters/alignment_counter.py' 2023-09-28T11:09:44,166 adding 'gqlib_old/counters/count_manager.py' 2023-09-28T11:09:44,167 adding 'gqlib_old/counters/region_counter.py' 2023-09-28T11:09:44,169 adding 'gqlib_old/counters/seq_counter.py' 2023-09-28T11:09:44,170 adding 'gqlib_old/db/__init__.py' 2023-09-28T11:09:44,172 adding 'gqlib_old/db/annotation_db.py' 2023-09-28T11:09:44,173 adding 'gqlib_old/db/database.py' 2023-09-28T11:09:44,175 adding 'gqlib_old/db/db_import.py' 2023-09-28T11:09:44,176 adding 'gqlib_old/db/gff_dbm.py' 2023-09-28T11:09:44,178 adding 'gqlib_old/db/models/__init__.py' 2023-09-28T11:09:44,179 adding 'gqlib_old/db/models/db.py' 2023-09-28T11:09:44,180 adding 'gqlib_old/db/models/meta.py' 2023-09-28T11:09:44,182 adding 'gqlib_old/profilers/__init__.py' 2023-09-28T11:09:44,184 adding 'gqlib_old/profilers/feature_quantifier.py' 2023-09-28T11:09:44,185 adding 'gqlib_old/profilers/gene_quantifier.py' 2023-09-28T11:09:44,187 adding 'gqlib_old/profilers/region_quantifier.py' 2023-09-28T11:09:44,188 adding 'gqlib_oldx/__init__.py' 2023-09-28T11:09:44,190 adding 'gqlib_oldx/__main__.py' 2023-09-28T11:09:44,191 adding 'gqlib_oldx/handle_args.py' 2023-09-28T11:09:44,193 adding 'gqlib_oldx/alignment/__init__.py' 2023-09-28T11:09:44,194 adding 'gqlib_oldx/alignment/aln_group.py' 2023-09-28T11:09:44,196 adding 'gqlib_oldx/alignment/bamreader.py' 2023-09-28T11:09:44,198 adding 'gqlib_oldx/alignment/pysam_alignment_processor.py' 2023-09-28T11:09:44,199 adding 'gqlib_oldx/annotation/__init__.py' 2023-09-28T11:09:44,201 adding 'gqlib_oldx/annotation/count_annotator.py' 2023-09-28T11:09:44,203 adding 'gqlib_oldx/annotation/count_writer.py' 2023-09-28T11:09:44,205 adding 'gqlib_oldx/bin/__init__.py' 2023-09-28T11:09:44,206 adding 'gqlib_oldx/bin/build_bed_database.py' 2023-09-28T11:09:44,208 adding 'gqlib_oldx/bin/build_custom_database.py' 2023-09-28T11:09:44,209 adding 'gqlib_oldx/bin/build_domain_database.py' 2023-09-28T11:09:44,211 adding 'gqlib_oldx/bin/build_gene_database.py' 2023-09-28T11:09:44,212 adding 'gqlib_oldx/bin/collate_counts.py' 2023-09-28T11:09:44,213 adding 'gqlib_oldx/bin/collate_studies.py' 2023-09-28T11:09:44,215 adding 'gqlib_oldx/bin/split_table.py' 2023-09-28T11:09:44,216 adding 'gqlib_oldx/counters/__init__.py' 2023-09-28T11:09:44,217 adding 'gqlib_oldx/counters/alignment_counter.py' 2023-09-28T11:09:44,219 adding 'gqlib_oldx/counters/count_manager.py' 2023-09-28T11:09:44,220 adding 'gqlib_oldx/counters/region_counter.py' 2023-09-28T11:09:44,221 adding 'gqlib_oldx/counters/seq_counter.py' 2023-09-28T11:09:44,223 adding 'gqlib_oldx/db/__init__.py' 2023-09-28T11:09:44,224 adding 'gqlib_oldx/db/annotation_db.py' 2023-09-28T11:09:44,225 adding 'gqlib_oldx/db/database.py' 2023-09-28T11:09:44,227 adding 'gqlib_oldx/db/db_import.py' 2023-09-28T11:09:44,228 adding 'gqlib_oldx/db/gff_dbm.py' 2023-09-28T11:09:44,230 adding 'gqlib_oldx/db/models/__init__.py' 2023-09-28T11:09:44,231 adding 'gqlib_oldx/db/models/db.py' 2023-09-28T11:09:44,232 adding 'gqlib_oldx/db/models/meta.py' 2023-09-28T11:09:44,234 adding 'gqlib_oldx/profilers/__init__.py' 2023-09-28T11:09:44,236 adding 'gqlib_oldx/profilers/feature_quantifier.py' 2023-09-28T11:09:44,237 adding 'gqlib_oldx/profilers/gene_quantifier.py' 2023-09-28T11:09:44,238 adding 'gqlib_oldx/profilers/region_quantifier.py' 2023-09-28T11:09:44,240 adding 'gqlib-2.14.0.dist-info/LICENSE' 2023-09-28T11:09:44,241 adding 'gqlib-2.14.0.dist-info/METADATA' 2023-09-28T11:09:44,242 adding 'gqlib-2.14.0.dist-info/WHEEL' 2023-09-28T11:09:44,242 adding 'gqlib-2.14.0.dist-info/top_level.txt' 2023-09-28T11:09:44,244 adding 'gqlib-2.14.0.dist-info/RECORD' 2023-09-28T11:09:44,248 removing build/bdist.linux-armv7l/wheel 2023-09-28T11:09:44,394 Building wheel for gqlib (setup.py): finished with status 'done' 2023-09-28T11:09:44,398 Created wheel for gqlib: filename=gqlib-2.14.0-py3-none-any.whl size=157112 sha256=c41b281122c2b923b2d3c89f0465f171cbe007c915c27c6710476cd1fed98574 2023-09-28T11:09:44,399 Stored in directory: /tmp/pip-ephem-wheel-cache-dcaazjna/wheels/29/41/65/e42df598b6f929fd41f556fd99950bbeaf54de393f561063b2 2023-09-28T11:09:44,412 Successfully built gqlib 2023-09-28T11:09:44,420 Removed build tracker: '/tmp/pip-build-tracker-bm1tbw10'