2023-09-28T13:08:43,684 Created temporary directory: /tmp/pip-build-tracker-dhcfg4mj 2023-09-28T13:08:43,685 Initialized build tracking at /tmp/pip-build-tracker-dhcfg4mj 2023-09-28T13:08:43,685 Created build tracker: /tmp/pip-build-tracker-dhcfg4mj 2023-09-28T13:08:43,686 Entered build tracker: /tmp/pip-build-tracker-dhcfg4mj 2023-09-28T13:08:43,687 Created temporary directory: /tmp/pip-wheel-zsexavtt 2023-09-28T13:08:43,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-r2_crwg2 2023-09-28T13:08:43,714 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-28T13:08:43,718 2 location(s) to search for versions of abutils: 2023-09-28T13:08:43,718 * https://pypi.org/simple/abutils/ 2023-09-28T13:08:43,718 * https://www.piwheels.org/simple/abutils/ 2023-09-28T13:08:43,719 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2023-09-28T13:08:43,720 Getting page https://pypi.org/simple/abutils/ 2023-09-28T13:08:43,721 Found index url https://pypi.org/simple/ 2023-09-28T13:08:44,161 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json 2023-09-28T13:08:44,174 Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1 2023-09-28T13:08:44,175 Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2 2023-09-28T13:08:44,176 Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3 2023-09-28T13:08:44,177 Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4 2023-09-28T13:08:44,178 Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5 2023-09-28T13:08:44,179 Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6 2023-09-28T13:08:44,180 Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7 2023-09-28T13:08:44,181 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,182 Found link https://files.pythonhosted.org/packages/8d/4f/f8bde54f3acd7bf945ac9d612145ca8fc2a0eecf26aa439921941211a91a/abutils-0.1.0.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.0 2023-09-28T13:08:44,183 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/99/db/544d2861d9f00f1454ae247e50d074062929bdeb0c2d0e968f51e132320e/abutils-0.1.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,184 Found link https://files.pythonhosted.org/packages/2e/53/f9f6ef913b46b47233508bafc5c4869a46f3c66a0ec9e446bef0537c88f6/abutils-0.1.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.1 2023-09-28T13:08:44,184 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/72/6e/6af90e6c896511e60fa77eeb6742933760f8cc5ba8a8ffbea1bf00440dcf/abutils-0.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,185 Found link https://files.pythonhosted.org/packages/58/06/198c2161367eed257bbbc6295af2f6bd9148bccd26f67535bd07d1974dfb/abutils-0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2 2023-09-28T13:08:44,186 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e9/6b/41bd824641aee954bdc00d6fcc3d7f411af32a68acdbb7330c59d7fab67f/abutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,187 Found link https://files.pythonhosted.org/packages/c3/51/083596ecb529073ccc5142ffe85766aef208bd4d6925da8f771f6f95e256/abutils-0.2.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.1 2023-09-28T13:08:44,188 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/94/cf/ae1ab5392b0f34c874cc8388d4df2985a2fc02d63dedcad0c2f4ca4b92bd/abutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,189 Found link https://files.pythonhosted.org/packages/dc/f5/c8838ebb6fbaa6b3d01d01d2d56e2ad5352fbeebf5086542c5bcef34c06a/abutils-0.2.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.2 2023-09-28T13:08:44,190 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/6a/94/90937a56b32783d6d57a2d6ff5e47d10d1d384f3d084e304f7870297853d/abutils-0.2.3-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,190 Found link https://files.pythonhosted.org/packages/1e/a6/95c66c7ea2857825eb0af0fcd4e53687b65e4842b010caea5276bd97cd22/abutils-0.2.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.3 2023-09-28T13:08:44,191 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/1b/b2/13e6e64fe25b4ef34bcd9fbd9785b8446dbca4cf4a7fbbafddbfba957aad/abutils-0.2.4-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,192 Found link https://files.pythonhosted.org/packages/cc/04/a14461968dc575254af0e23cb7b259bfd57baa683653d88fcb21af6d526d/abutils-0.2.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.4 2023-09-28T13:08:44,192 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/f8/0d/f3f7b8eb834c24ffe8bf065ce6ab6bf5a60953ea369b1714a5130c0f17fe/abutils-0.2.5-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,193 Found link https://files.pythonhosted.org/packages/3a/91/b7e6649e58b286eb6bfcc14fbe33cc120e3ff30fbacf681b4dca97a448bd/abutils-0.2.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.5 2023-09-28T13:08:44,194 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/12/e1/e1ceba3721fa4fff7f176206a290b81ec655694bd89734038c4d699fbb7e/abutils-0.2.6-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-09-28T13:08:44,195 Found link 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https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.3.1 2023-09-28T13:08:44,206 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/99/86/2e6b0ac4db36ffec78925d7fc6da7dfb15017038325f8daa7feac0729f03/abutils-0.4.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8) 2023-09-28T13:08:44,206 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/f6/d6/90c610e33db7ea064aaf85e875712994d51c6594fa034ea6dba0f994a332/abutils-0.4.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8) 2023-09-28T13:08:44,208 Found link https://files.pythonhosted.org/packages/05/4f/d2a62ba3753455ecb46772cb2c6c99148904a1fb1066e5ffb3a45d62ce53/abutils-0.4.2.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.2 2023-09-28T13:08:44,209 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e1/fe/c5bb8d54b0c116ec2580b04b3a21f19c017b2437602701cda5a59012cad0/abutils-0.4.3-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8) 2023-09-28T13:08:44,210 Found link https://files.pythonhosted.org/packages/27/8c/e1177b8f90d4c56b25d779562900871e838398f003f10493c41383959492/abutils-0.4.3.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.3 2023-09-28T13:08:44,211 Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/ 2023-09-28T13:08:44,212 Getting page https://www.piwheels.org/simple/abutils/ 2023-09-28T13:08:44,214 Found index url https://www.piwheels.org/simple/ 2023-09-28T13:08:44,419 Fetched page https://www.piwheels.org/simple/abutils/ as text/html 2023-09-28T13:08:44,425 Skipping link: No binaries permitted for abutils: 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2023-09-28T13:08:44,435 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.5-py3-none-any.whl#sha256=82da39e304387e62441d40c8da3e8b8e4f88b62838f0cfa01c9ac53272fd9322 (from https://www.piwheels.org/simple/abutils/) 2023-09-28T13:08:44,436 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.4-py3-none-any.whl#sha256=a857179e2e3aacd72f0100ab26ddd429e314d0484d9dea700b6e3df6e7b08bfc (from https://www.piwheels.org/simple/abutils/) 2023-09-28T13:08:44,437 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.3-py3-none-any.whl#sha256=3f9161ddaf87fcf6397f20c643a10e6c64dcc028dd9d608e3ba95e9eb4b42301 (from https://www.piwheels.org/simple/abutils/) 2023-09-28T13:08:44,437 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.2-py3-none-any.whl#sha256=fb1485c1bdfebb4961c6b63db9ae9c45af6af544bf5a1d88830bff9601c333f7 (from https://www.piwheels.org/simple/abutils/) 2023-09-28T13:08:44,438 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.1-py3-none-any.whl#sha256=80befe258b5d18e6293ffa5f53b4c6fca19cd9c57418df3ad521a374f3827c35 (from https://www.piwheels.org/simple/abutils/) 2023-09-28T13:08:44,438 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2023-09-28T13:08:44,439 Skipping link: not a file: https://pypi.org/simple/abutils/ 2023-09-28T13:08:44,459 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2023-09-28T13:08:44,477 Collecting abutils==0.4.3 2023-09-28T13:08:44,480 Created temporary directory: /tmp/pip-unpack-c8vegvws 2023-09-28T13:08:44,989 Downloading abutils-0.4.3.tar.gz (93.8 MB) 2023-09-28T13:09:20,914 Added abutils==0.4.3 from https://files.pythonhosted.org/packages/27/8c/e1177b8f90d4c56b25d779562900871e838398f003f10493c41383959492/abutils-0.4.3.tar.gz to build tracker '/tmp/pip-build-tracker-dhcfg4mj' 2023-09-28T13:09:20,919 Running setup.py (path:/tmp/pip-wheel-zsexavtt/abutils_0b99a61bd2b948a887c69485dca0bb7f/setup.py) egg_info for package abutils 2023-09-28T13:09:20,921 Created temporary directory: /tmp/pip-pip-egg-info-ddna3fly 2023-09-28T13:09:20,922 Preparing metadata (setup.py): started 2023-09-28T13:09:20,924 Running command python setup.py egg_info 2023-09-28T13:09:21,428 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T13:09:21,428 !! 2023-09-28T13:09:21,429 ******************************************************************************** 2023-09-28T13:09:21,430 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T13:09:21,430 versions. Please use the underscore name 'description_file' instead. 2023-09-28T13:09:21,432 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T13:09:21,432 calls to avoid build errors in the future. 2023-09-28T13:09:21,434 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T13:09:21,434 ******************************************************************************** 2023-09-28T13:09:21,435 !! 2023-09-28T13:09:21,436 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T13:09:21,970 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T13:09:21,970 !! 2023-09-28T13:09:21,972 ******************************************************************************** 2023-09-28T13:09:21,972 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T13:09:21,973 versions. Please use the underscore name 'description_file' instead. 2023-09-28T13:09:21,974 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T13:09:21,975 calls to avoid build errors in the future. 2023-09-28T13:09:21,976 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T13:09:21,977 ******************************************************************************** 2023-09-28T13:09:21,978 !! 2023-09-28T13:09:21,978 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T13:09:22,010 running egg_info 2023-09-28T13:09:22,012 creating /tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info 2023-09-28T13:09:22,035 writing /tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/PKG-INFO 2023-09-28T13:09:22,039 writing dependency_links to /tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/dependency_links.txt 2023-09-28T13:09:22,041 writing requirements to /tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/requires.txt 2023-09-28T13:09:22,041 writing top-level names to /tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/top_level.txt 2023-09-28T13:09:22,043 writing manifest file '/tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/SOURCES.txt' 2023-09-28T13:09:22,122 reading manifest file '/tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/SOURCES.txt' 2023-09-28T13:09:22,124 reading manifest template 'MANIFEST.in' 2023-09-28T13:09:22,128 warning: no files found matching 'abutils/tenx/*' 2023-09-28T13:09:22,132 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2023-09-28T13:09:22,135 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2023-09-28T13:09:22,139 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2023-09-28T13:09:22,142 adding license file 'LICENSE' 2023-09-28T13:09:22,150 writing manifest file '/tmp/pip-pip-egg-info-ddna3fly/abutils.egg-info/SOURCES.txt' 2023-09-28T13:09:22,257 Preparing metadata (setup.py): finished with status 'done' 2023-09-28T13:09:22,261 Source in /tmp/pip-wheel-zsexavtt/abutils_0b99a61bd2b948a887c69485dca0bb7f has version 0.4.3, which satisfies requirement abutils==0.4.3 from https://files.pythonhosted.org/packages/27/8c/e1177b8f90d4c56b25d779562900871e838398f003f10493c41383959492/abutils-0.4.3.tar.gz 2023-09-28T13:09:22,262 Removed abutils==0.4.3 from https://files.pythonhosted.org/packages/27/8c/e1177b8f90d4c56b25d779562900871e838398f003f10493c41383959492/abutils-0.4.3.tar.gz from build tracker '/tmp/pip-build-tracker-dhcfg4mj' 2023-09-28T13:09:22,269 Created temporary directory: /tmp/pip-unpack-dftsc6jo 2023-09-28T13:09:22,270 Created temporary directory: /tmp/pip-unpack-um_u_y7l 2023-09-28T13:09:22,292 Building wheels for collected packages: abutils 2023-09-28T13:09:22,297 Created temporary directory: /tmp/pip-wheel-g2_d1ke0 2023-09-28T13:09:22,298 Building wheel for abutils (setup.py): started 2023-09-28T13:09:22,299 Destination directory: /tmp/pip-wheel-g2_d1ke0 2023-09-28T13:09:22,300 Running command python setup.py bdist_wheel 2023-09-28T13:09:22,735 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T13:09:22,736 !! 2023-09-28T13:09:22,737 ******************************************************************************** 2023-09-28T13:09:22,737 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T13:09:22,738 versions. Please use the underscore name 'description_file' instead. 2023-09-28T13:09:22,739 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T13:09:22,740 calls to avoid build errors in the future. 2023-09-28T13:09:22,741 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T13:09:22,741 ******************************************************************************** 2023-09-28T13:09:22,742 !! 2023-09-28T13:09:22,743 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T13:09:23,273 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-28T13:09:23,274 !! 2023-09-28T13:09:23,275 ******************************************************************************** 2023-09-28T13:09:23,275 Usage of dash-separated 'description-file' will not be supported in future 2023-09-28T13:09:23,276 versions. Please use the underscore name 'description_file' instead. 2023-09-28T13:09:23,277 This deprecation is overdue, please update your project and remove deprecated 2023-09-28T13:09:23,278 calls to avoid build errors in the future. 2023-09-28T13:09:23,278 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-28T13:09:23,279 ******************************************************************************** 2023-09-28T13:09:23,280 !! 2023-09-28T13:09:23,280 opt = self.warn_dash_deprecation(opt, section) 2023-09-28T13:09:23,305 running bdist_wheel 2023-09-28T13:09:23,396 running build 2023-09-28T13:09:23,397 running build_py 2023-09-28T13:09:23,423 creating build 2023-09-28T13:09:23,424 creating build/lib 2023-09-28T13:09:23,424 creating build/lib/abutils 2023-09-28T13:09:23,425 copying abutils/io.py -> build/lib/abutils 2023-09-28T13:09:23,427 copying abutils/version.py -> build/lib/abutils 2023-09-28T13:09:23,429 copying abutils/tl.py -> build/lib/abutils 2023-09-28T13:09:23,431 copying abutils/cl.py -> build/lib/abutils 2023-09-28T13:09:23,433 copying abutils/pl.py -> build/lib/abutils 2023-09-28T13:09:23,434 copying abutils/__init__.py -> build/lib/abutils 2023-09-28T13:09:23,436 creating build/lib/abutils/tools 2023-09-28T13:09:23,437 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2023-09-28T13:09:23,440 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2023-09-28T13:09:23,443 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2023-09-28T13:09:23,446 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2023-09-28T13:09:23,448 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2023-09-28T13:09:23,450 creating build/lib/abutils/plots 2023-09-28T13:09:23,451 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2023-09-28T13:09:23,453 copying abutils/plots/summary.py -> build/lib/abutils/plots 2023-09-28T13:09:23,456 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2023-09-28T13:09:23,458 copying abutils/plots/data.py -> build/lib/abutils/plots 2023-09-28T13:09:23,460 copying abutils/plots/base.py -> build/lib/abutils/plots 2023-09-28T13:09:23,462 copying abutils/plots/donut.py -> build/lib/abutils/plots 2023-09-28T13:09:23,464 copying abutils/plots/ring.py -> build/lib/abutils/plots 2023-09-28T13:09:23,466 copying abutils/plots/utils.py -> build/lib/abutils/plots 2023-09-28T13:09:23,468 copying abutils/plots/bar.py -> build/lib/abutils/plots 2023-09-28T13:09:23,470 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2023-09-28T13:09:23,472 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2023-09-28T13:09:23,474 copying abutils/plots/kde.py -> build/lib/abutils/plots 2023-09-28T13:09:23,477 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2023-09-28T13:09:23,481 creating build/lib/abutils/utils 2023-09-28T13:09:23,482 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2023-09-28T13:09:23,483 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2023-09-28T13:09:23,487 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2023-09-28T13:09:23,490 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2023-09-28T13:09:23,492 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2023-09-28T13:09:23,494 copying abutils/utils/color.py -> build/lib/abutils/utils 2023-09-28T13:09:23,496 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2023-09-28T13:09:23,498 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2023-09-28T13:09:23,500 copying abutils/utils/s3.py -> build/lib/abutils/utils 2023-09-28T13:09:23,502 copying abutils/utils/pipeline.py -> build/lib/abutils/utils 2023-09-28T13:09:23,504 copying abutils/utils/convert.py -> build/lib/abutils/utils 2023-09-28T13:09:23,506 copying abutils/utils/log.py -> build/lib/abutils/utils 2023-09-28T13:09:23,508 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2023-09-28T13:09:23,510 copying abutils/utils/database.py -> build/lib/abutils/utils 2023-09-28T13:09:23,512 copying abutils/utils/circos.py -> build/lib/abutils/utils 2023-09-28T13:09:23,514 copying abutils/utils/codons.py -> build/lib/abutils/utils 2023-09-28T13:09:23,515 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2023-09-28T13:09:23,517 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2023-09-28T13:09:23,519 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2023-09-28T13:09:23,521 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2023-09-28T13:09:23,523 creating build/lib/abutils/core 2023-09-28T13:09:23,524 copying abutils/core/pair.py -> build/lib/abutils/core 2023-09-28T13:09:23,528 copying abutils/core/sequence.py -> build/lib/abutils/core 2023-09-28T13:09:23,530 copying abutils/core/lineage.py -> build/lib/abutils/core 2023-09-28T13:09:23,533 copying abutils/core/__init__.py -> build/lib/abutils/core 2023-09-28T13:09:23,535 creating build/lib/abutils/tests 2023-09-28T13:09:23,536 copying abutils/tests/test_alignment.py -> build/lib/abutils/tests 2023-09-28T13:09:23,539 copying abutils/tests/test_cluster.py -> build/lib/abutils/tests 2023-09-28T13:09:23,541 copying abutils/tests/test_phylo.py -> build/lib/abutils/tests 2023-09-28T13:09:23,543 copying abutils/tests/test_clonify.py -> build/lib/abutils/tests 2023-09-28T13:09:23,545 copying abutils/tests/test_pair.py -> build/lib/abutils/tests 2023-09-28T13:09:23,547 copying abutils/tests/test_color.py -> build/lib/abutils/tests 2023-09-28T13:09:23,550 copying abutils/tests/__init__.py -> build/lib/abutils/tests 2023-09-28T13:09:23,551 copying abutils/tests/test_utilities.py -> build/lib/abutils/tests 2023-09-28T13:09:23,553 copying abutils/tests/test_sequence.py -> build/lib/abutils/tests 2023-09-28T13:09:23,555 creating build/lib/abutils/plots/models 2023-09-28T13:09:23,556 copying abutils/plots/models/data.py -> build/lib/abutils/plots/models 2023-09-28T13:09:23,559 copying abutils/plots/models/__init__.py -> build/lib/abutils/plots/models 2023-09-28T13:09:23,561 creating build/lib/abutils/plots/mixins 2023-09-28T13:09:23,562 copying abutils/plots/mixins/hue.py -> build/lib/abutils/plots/mixins 2023-09-28T13:09:23,564 copying abutils/plots/mixins/__init__.py -> build/lib/abutils/plots/mixins 2023-09-28T13:09:23,566 running egg_info 2023-09-28T13:09:23,620 writing abutils.egg-info/PKG-INFO 2023-09-28T13:09:23,623 writing dependency_links to abutils.egg-info/dependency_links.txt 2023-09-28T13:09:23,625 writing requirements to abutils.egg-info/requires.txt 2023-09-28T13:09:23,627 writing top-level names to abutils.egg-info/top_level.txt 2023-09-28T13:09:23,657 reading manifest file 'abutils.egg-info/SOURCES.txt' 2023-09-28T13:09:23,663 reading manifest template 'MANIFEST.in' 2023-09-28T13:09:23,667 warning: no files found matching 'abutils/tenx/*' 2023-09-28T13:09:23,671 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2023-09-28T13:09:23,673 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2023-09-28T13:09:23,676 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2023-09-28T13:09:23,678 adding license file 'LICENSE' 2023-09-28T13:09:23,689 writing manifest file 'abutils.egg-info/SOURCES.txt' 2023-09-28T13:09:23,692 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin' is absent from the `packages` configuration. 2023-09-28T13:09:23,692 !! 2023-09-28T13:09:23,693 ******************************************************************************** 2023-09-28T13:09:23,694 ############################ 2023-09-28T13:09:23,695 # Package would be ignored # 2023-09-28T13:09:23,695 ############################ 2023-09-28T13:09:23,696 Python recognizes 'abutils.bin' as an importable package[^1], 2023-09-28T13:09:23,697 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,698 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,698 package, please make sure that 'abutils.bin' is explicitly added 2023-09-28T13:09:23,699 to the `packages` configuration field. 2023-09-28T13:09:23,699 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,700 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,700 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,701 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,703 If you don't want 'abutils.bin' to be distributed and are 2023-09-28T13:09:23,703 already explicitly excluding 'abutils.bin' via 2023-09-28T13:09:23,704 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,704 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,704 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,705 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,706 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,708 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,708 even if it does not contain any `.py` files. 2023-09-28T13:09:23,709 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,710 directory, all directories are treated like packages. 2023-09-28T13:09:23,710 ******************************************************************************** 2023-09-28T13:09:23,711 !! 2023-09-28T13:09:23,712 check.warn(importable) 2023-09-28T13:09:23,713 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64' is absent from the `packages` configuration. 2023-09-28T13:09:23,713 !! 2023-09-28T13:09:23,714 ******************************************************************************** 2023-09-28T13:09:23,715 ############################ 2023-09-28T13:09:23,716 # Package would be ignored # 2023-09-28T13:09:23,716 ############################ 2023-09-28T13:09:23,717 Python recognizes 'abutils.bin.mafft_darwin_amd64' as an importable package[^1], 2023-09-28T13:09:23,717 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,718 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,719 package, please make sure that 'abutils.bin.mafft_darwin_amd64' is explicitly added 2023-09-28T13:09:23,719 to the `packages` configuration field. 2023-09-28T13:09:23,721 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,722 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,723 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,727 If you don't want 'abutils.bin.mafft_darwin_amd64' to be distributed and are 2023-09-28T13:09:23,728 already explicitly excluding 'abutils.bin.mafft_darwin_amd64' via 2023-09-28T13:09:23,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,730 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,731 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,732 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,735 even if it does not contain any `.py` files. 2023-09-28T13:09:23,738 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,739 directory, all directories are treated like packages. 2023-09-28T13:09:23,741 ******************************************************************************** 2023-09-28T13:09:23,741 !! 2023-09-28T13:09:23,742 check.warn(importable) 2023-09-28T13:09:23,742 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is absent from the `packages` configuration. 2023-09-28T13:09:23,743 !! 2023-09-28T13:09:23,743 ******************************************************************************** 2023-09-28T13:09:23,744 ############################ 2023-09-28T13:09:23,744 # Package would be ignored # 2023-09-28T13:09:23,745 ############################ 2023-09-28T13:09:23,749 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' as an importable package[^1], 2023-09-28T13:09:23,750 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,751 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,752 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is explicitly added 2023-09-28T13:09:23,752 to the `packages` configuration field. 2023-09-28T13:09:23,753 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,756 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,758 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,759 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,760 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' to be distributed and are 2023-09-28T13:09:23,761 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' via 2023-09-28T13:09:23,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,763 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,764 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,769 even if it does not contain any `.py` files. 2023-09-28T13:09:23,772 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,773 directory, all directories are treated like packages. 2023-09-28T13:09:23,776 ******************************************************************************** 2023-09-28T13:09:23,779 !! 2023-09-28T13:09:23,781 check.warn(importable) 2023-09-28T13:09:23,781 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2023-09-28T13:09:23,782 !! 2023-09-28T13:09:23,784 ******************************************************************************** 2023-09-28T13:09:23,785 ############################ 2023-09-28T13:09:23,786 # Package would be ignored # 2023-09-28T13:09:23,787 ############################ 2023-09-28T13:09:23,787 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' as an importable package[^1], 2023-09-28T13:09:23,788 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,789 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,790 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is explicitly added 2023-09-28T13:09:23,790 to the `packages` configuration field. 2023-09-28T13:09:23,791 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,792 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,793 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,794 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,795 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' to be distributed and are 2023-09-28T13:09:23,796 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' via 2023-09-28T13:09:23,796 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,797 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,798 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,799 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,800 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,801 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,802 even if it does not contain any `.py` files. 2023-09-28T13:09:23,802 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,803 directory, all directories are treated like packages. 2023-09-28T13:09:23,803 ******************************************************************************** 2023-09-28T13:09:23,806 !! 2023-09-28T13:09:23,809 check.warn(importable) 2023-09-28T13:09:23,812 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64' is absent from the `packages` configuration. 2023-09-28T13:09:23,813 !! 2023-09-28T13:09:23,819 ******************************************************************************** 2023-09-28T13:09:23,823 ############################ 2023-09-28T13:09:23,823 # Package would be ignored # 2023-09-28T13:09:23,825 ############################ 2023-09-28T13:09:23,826 Python recognizes 'abutils.bin.mafft_darwin_arm64' as an importable package[^1], 2023-09-28T13:09:23,829 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,830 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,832 package, please make sure that 'abutils.bin.mafft_darwin_arm64' is explicitly added 2023-09-28T13:09:23,835 to the `packages` configuration field. 2023-09-28T13:09:23,839 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,846 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,847 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,850 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,855 If you don't want 'abutils.bin.mafft_darwin_arm64' to be distributed and are 2023-09-28T13:09:23,856 already explicitly excluding 'abutils.bin.mafft_darwin_arm64' via 2023-09-28T13:09:23,858 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,859 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,859 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,861 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,863 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,866 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,867 even if it does not contain any `.py` files. 2023-09-28T13:09:23,868 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,869 directory, all directories are treated like packages. 2023-09-28T13:09:23,870 ******************************************************************************** 2023-09-28T13:09:23,873 !! 2023-09-28T13:09:23,874 check.warn(importable) 2023-09-28T13:09:23,876 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is absent from the `packages` configuration. 2023-09-28T13:09:23,878 !! 2023-09-28T13:09:23,882 ******************************************************************************** 2023-09-28T13:09:23,883 ############################ 2023-09-28T13:09:23,890 # Package would be ignored # 2023-09-28T13:09:23,908 ############################ 2023-09-28T13:09:23,933 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' as an importable package[^1], 2023-09-28T13:09:23,949 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,950 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,951 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is explicitly added 2023-09-28T13:09:23,951 to the `packages` configuration field. 2023-09-28T13:09:23,952 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,953 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,955 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,959 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' to be distributed and are 2023-09-28T13:09:23,959 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' via 2023-09-28T13:09:23,960 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,961 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,961 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,963 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,964 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,966 even if it does not contain any `.py` files. 2023-09-28T13:09:23,967 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,967 directory, all directories are treated like packages. 2023-09-28T13:09:23,967 ******************************************************************************** 2023-09-28T13:09:23,968 !! 2023-09-28T13:09:23,969 check.warn(importable) 2023-09-28T13:09:23,969 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is absent from the `packages` configuration. 2023-09-28T13:09:23,970 !! 2023-09-28T13:09:23,970 ******************************************************************************** 2023-09-28T13:09:23,971 ############################ 2023-09-28T13:09:23,971 # Package would be ignored # 2023-09-28T13:09:23,972 ############################ 2023-09-28T13:09:23,972 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' as an importable package[^1], 2023-09-28T13:09:23,973 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,973 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,974 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is explicitly added 2023-09-28T13:09:23,974 to the `packages` configuration field. 2023-09-28T13:09:23,975 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:23,977 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:23,978 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:23,979 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:23,980 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' to be distributed and are 2023-09-28T13:09:23,981 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' via 2023-09-28T13:09:23,981 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:23,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:23,983 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:23,984 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:23,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:23,987 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:23,987 even if it does not contain any `.py` files. 2023-09-28T13:09:23,988 On the other hand, currently there is no concept of package data 2023-09-28T13:09:23,988 directory, all directories are treated like packages. 2023-09-28T13:09:23,989 ******************************************************************************** 2023-09-28T13:09:23,990 !! 2023-09-28T13:09:23,990 check.warn(importable) 2023-09-28T13:09:23,991 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64' is absent from the `packages` configuration. 2023-09-28T13:09:23,992 !! 2023-09-28T13:09:23,993 ******************************************************************************** 2023-09-28T13:09:23,993 ############################ 2023-09-28T13:09:23,994 # Package would be ignored # 2023-09-28T13:09:23,995 ############################ 2023-09-28T13:09:23,995 Python recognizes 'abutils.bin.mafft_linux_amd64' as an importable package[^1], 2023-09-28T13:09:23,996 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:23,997 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:23,997 package, please make sure that 'abutils.bin.mafft_linux_amd64' is explicitly added 2023-09-28T13:09:23,998 to the `packages` configuration field. 2023-09-28T13:09:23,999 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:23,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:24,000 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:24,000 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:24,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:24,002 If you don't want 'abutils.bin.mafft_linux_amd64' to be distributed and are 2023-09-28T13:09:24,003 already explicitly excluding 'abutils.bin.mafft_linux_amd64' via 2023-09-28T13:09:24,003 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:24,003 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:24,004 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:24,005 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:24,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:24,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:24,008 even if it does not contain any `.py` files. 2023-09-28T13:09:24,009 On the other hand, currently there is no concept of package data 2023-09-28T13:09:24,009 directory, all directories are treated like packages. 2023-09-28T13:09:24,010 ******************************************************************************** 2023-09-28T13:09:24,011 !! 2023-09-28T13:09:24,012 check.warn(importable) 2023-09-28T13:09:24,013 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is absent from the `packages` configuration. 2023-09-28T13:09:24,013 !! 2023-09-28T13:09:24,015 ******************************************************************************** 2023-09-28T13:09:24,015 ############################ 2023-09-28T13:09:24,016 # Package would be ignored # 2023-09-28T13:09:24,017 ############################ 2023-09-28T13:09:24,017 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.bin' as an importable package[^1], 2023-09-28T13:09:24,018 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:24,019 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:24,020 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is explicitly added 2023-09-28T13:09:24,020 to the `packages` configuration field. 2023-09-28T13:09:24,021 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:24,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:24,022 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:24,024 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:24,025 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:24,026 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.bin' to be distributed and are 2023-09-28T13:09:24,027 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.bin' via 2023-09-28T13:09:24,028 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:24,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:24,029 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:24,030 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:24,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:24,032 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:24,033 even if it does not contain any `.py` files. 2023-09-28T13:09:24,033 On the other hand, currently there is no concept of package data 2023-09-28T13:09:24,034 directory, all directories are treated like packages. 2023-09-28T13:09:24,034 ******************************************************************************** 2023-09-28T13:09:24,035 !! 2023-09-28T13:09:24,036 check.warn(importable) 2023-09-28T13:09:24,036 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2023-09-28T13:09:24,036 !! 2023-09-28T13:09:24,037 ******************************************************************************** 2023-09-28T13:09:24,038 ############################ 2023-09-28T13:09:24,038 # Package would be ignored # 2023-09-28T13:09:24,039 ############################ 2023-09-28T13:09:24,039 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' as an importable package[^1], 2023-09-28T13:09:24,040 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:24,041 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:24,042 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is explicitly added 2023-09-28T13:09:24,043 to the `packages` configuration field. 2023-09-28T13:09:24,044 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:24,045 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:24,045 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:24,046 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:24,048 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:24,049 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' to be distributed and are 2023-09-28T13:09:24,050 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' via 2023-09-28T13:09:24,050 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:24,051 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:24,051 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:24,052 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:24,053 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:24,055 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:24,056 even if it does not contain any `.py` files. 2023-09-28T13:09:24,056 On the other hand, currently there is no concept of package data 2023-09-28T13:09:24,057 directory, all directories are treated like packages. 2023-09-28T13:09:24,058 ******************************************************************************** 2023-09-28T13:09:24,059 !! 2023-09-28T13:09:24,060 check.warn(importable) 2023-09-28T13:09:24,060 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2023-09-28T13:09:24,061 !! 2023-09-28T13:09:24,061 ******************************************************************************** 2023-09-28T13:09:24,062 ############################ 2023-09-28T13:09:24,062 # Package would be ignored # 2023-09-28T13:09:24,063 ############################ 2023-09-28T13:09:24,063 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2023-09-28T13:09:24,063 but it is absent from setuptools' `packages` configuration. 2023-09-28T13:09:24,064 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-28T13:09:24,065 package, please make sure that 'abutils.utils.matrices' is explicitly added 2023-09-28T13:09:24,065 to the `packages` configuration field. 2023-09-28T13:09:24,066 Alternatively, you can also rely on setuptools' discovery methods 2023-09-28T13:09:24,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-28T13:09:24,067 instead of `find_packages(...)`/`find:`). 2023-09-28T13:09:24,068 You can read more about "package discovery" on setuptools documentation page: 2023-09-28T13:09:24,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-28T13:09:24,069 If you don't want 'abutils.utils.matrices' to be distributed and are 2023-09-28T13:09:24,070 already explicitly excluding 'abutils.utils.matrices' via 2023-09-28T13:09:24,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-28T13:09:24,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-28T13:09:24,072 combination with a more fine grained `package-data` configuration. 2023-09-28T13:09:24,073 You can read more about "package data files" on setuptools documentation page: 2023-09-28T13:09:24,074 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-28T13:09:24,076 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-28T13:09:24,076 even if it does not contain any `.py` files. 2023-09-28T13:09:24,077 On the other hand, currently there is no concept of package data 2023-09-28T13:09:24,078 directory, all directories are treated like packages. 2023-09-28T13:09:24,078 ******************************************************************************** 2023-09-28T13:09:24,080 !! 2023-09-28T13:09:24,080 check.warn(importable) 2023-09-28T13:09:24,081 creating build/lib/abutils/bin 2023-09-28T13:09:24,081 copying abutils/bin/cdhit_darwin_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:24,082 copying abutils/bin/cdhit_darwin_arm64 -> build/lib/abutils/bin 2023-09-28T13:09:24,082 copying abutils/bin/cdhit_linux_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:24,083 copying abutils/bin/fasttree_darwin_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:24,083 copying abutils/bin/fasttree_darwin_arm64 -> build/lib/abutils/bin 2023-09-28T13:09:24,084 copying abutils/bin/fasttree_linux_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:24,084 copying abutils/bin/mafft_darwin -> build/lib/abutils/bin 2023-09-28T13:09:24,085 copying abutils/bin/mafft_linux -> build/lib/abutils/bin 2023-09-28T13:09:24,085 copying abutils/bin/mmseqs_darwin_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:24,086 copying abutils/bin/mmseqs_darwin_arm64 -> build/lib/abutils/bin 2023-09-28T13:09:24,646 copying abutils/bin/mmseqs_linux_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:25,324 copying abutils/bin/muscle3_darwin -> build/lib/abutils/bin 2023-09-28T13:09:25,335 copying abutils/bin/muscle3_linux -> build/lib/abutils/bin 2023-09-28T13:09:25,343 copying abutils/bin/muscle_darwin_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:25,363 copying abutils/bin/muscle_darwin_arm64 -> build/lib/abutils/bin 2023-09-28T13:09:25,379 copying abutils/bin/muscle_linux_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:25,426 copying abutils/bin/vsearch_darwin_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:25,436 copying abutils/bin/vsearch_darwin_arm64 -> build/lib/abutils/bin 2023-09-28T13:09:25,445 copying abutils/bin/vsearch_linux_amd64 -> build/lib/abutils/bin 2023-09-28T13:09:25,477 creating build/lib/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:25,479 copying abutils/bin/mafft_darwin_amd64/in -> build/lib/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:25,481 copying abutils/bin/mafft_darwin_amd64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:25,483 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir 2023-09-28T13:09:25,483 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-09-28T13:09:25,484 copying abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-09-28T13:09:25,492 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,493 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,520 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,536 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,544 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,727 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,756 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,771 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,789 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,805 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,880 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,890 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,904 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,927 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,932 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,949 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,951 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,977 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,980 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,982 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:25,987 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,019 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,034 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,052 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,080 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,106 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,137 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,152 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,166 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,188 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,204 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,207 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,215 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,241 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,254 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,271 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,316 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,346 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:26,350 creating build/lib/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:26,351 copying abutils/bin/mafft_darwin_arm64/in -> build/lib/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:26,353 copying abutils/bin/mafft_darwin_arm64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:26,355 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir 2023-09-28T13:09:26,356 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-09-28T13:09:26,357 copying abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-09-28T13:09:26,361 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,362 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,388 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,407 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,415 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,612 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,638 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,658 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,675 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,693 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,720 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,730 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,789 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,814 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,819 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,836 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,839 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,864 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,866 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,869 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,874 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,901 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,917 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,935 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,964 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:26,995 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,022 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,037 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,051 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,065 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,080 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,083 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,090 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,116 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,132 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,148 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,220 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,258 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:27,263 creating build/lib/abutils/bin/mafft_linux_amd64 2023-09-28T13:09:27,264 copying abutils/bin/mafft_linux_amd64/mafft.bat -> build/lib/abutils/bin/mafft_linux_amd64 2023-09-28T13:09:27,266 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir 2023-09-28T13:09:27,266 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-09-28T13:09:27,268 copying abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-09-28T13:09:27,272 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,273 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,294 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,310 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,321 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,326 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,389 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,392 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,412 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,428 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,444 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,460 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,481 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,494 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,509 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,533 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,535 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,547 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,564 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,567 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,588 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,590 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,592 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,604 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,670 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,684 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,707 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,730 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,754 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,774 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,791 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,807 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,822 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,840 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,843 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,854 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,874 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,889 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,906 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,927 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,949 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:27,960 creating build/lib/abutils/utils/matrices 2023-09-28T13:09:27,961 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2023-09-28T13:09:27,963 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2023-09-28T13:09:27,965 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2023-09-28T13:09:27,995 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-28T13:09:27,996 !! 2023-09-28T13:09:27,997 ******************************************************************************** 2023-09-28T13:09:27,997 Please avoid running ``setup.py`` directly. 2023-09-28T13:09:27,998 Instead, use pypa/build, pypa/installer or other 2023-09-28T13:09:27,998 standards-based tools. 2023-09-28T13:09:27,999 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-28T13:09:27,999 ******************************************************************************** 2023-09-28T13:09:28,000 !! 2023-09-28T13:09:28,001 self.initialize_options() 2023-09-28T13:09:28,019 installing to build/bdist.linux-armv7l/wheel 2023-09-28T13:09:28,020 running install 2023-09-28T13:09:28,043 running install_lib 2023-09-28T13:09:28,072 creating build/bdist.linux-armv7l 2023-09-28T13:09:28,072 creating build/bdist.linux-armv7l/wheel 2023-09-28T13:09:28,074 creating build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:28,075 creating build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,076 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,080 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,084 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,087 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,090 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-09-28T13:09:28,092 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:28,094 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:28,097 creating build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,098 copying build/lib/abutils/bin/muscle3_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,110 copying build/lib/abutils/bin/muscle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,135 copying build/lib/abutils/bin/fasttree_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,147 copying build/lib/abutils/bin/cdhit_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,154 copying build/lib/abutils/bin/vsearch_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,168 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2023-09-28T13:09:28,170 copying build/lib/abutils/bin/mafft_linux_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2023-09-28T13:09:28,172 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir 2023-09-28T13:09:28,175 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,176 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,198 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,210 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,212 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,227 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,231 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,254 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,275 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,285 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,287 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,309 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,324 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,345 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,362 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,364 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,388 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,391 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,412 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,434 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,504 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,528 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,540 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,560 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,577 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,588 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,607 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,624 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,643 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,655 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,670 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,685 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,696 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,712 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,715 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,735 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,756 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,773 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,776 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,798 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,814 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-09-28T13:09:28,837 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-09-28T13:09:28,838 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-09-28T13:09:28,843 copying build/lib/abutils/bin/muscle_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,860 copying build/lib/abutils/bin/muscle3_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:28,869 copying build/lib/abutils/bin/mmseqs_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:29,431 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:29,432 copying build/lib/abutils/bin/mafft_darwin_arm64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:29,434 copying build/lib/abutils/bin/mafft_darwin_arm64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-09-28T13:09:29,436 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir 2023-09-28T13:09:29,438 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,440 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,466 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,474 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,476 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,491 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,524 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,556 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,562 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,564 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,586 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,604 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,633 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,650 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,678 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,680 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,703 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,720 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,921 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,947 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,955 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:29,982 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,000 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,004 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,031 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,047 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,063 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,072 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,085 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,105 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,111 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,133 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,135 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,162 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,189 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,203 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,229 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,243 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-09-28T13:09:30,272 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-09-28T13:09:30,273 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-09-28T13:09:30,278 copying build/lib/abutils/bin/muscle_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,333 copying build/lib/abutils/bin/mafft_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,337 copying build/lib/abutils/bin/cdhit_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,343 copying build/lib/abutils/bin/mmseqs_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,452 copying build/lib/abutils/bin/fasttree_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,461 copying build/lib/abutils/bin/vsearch_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,470 copying build/lib/abutils/bin/fasttree_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:30,476 copying build/lib/abutils/bin/mmseqs_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:31,153 copying build/lib/abutils/bin/vsearch_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:31,187 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:31,188 copying build/lib/abutils/bin/mafft_darwin_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:31,190 copying build/lib/abutils/bin/mafft_darwin_amd64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-09-28T13:09:31,192 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir 2023-09-28T13:09:31,194 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,196 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,227 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,239 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,242 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,267 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,338 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,371 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,376 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,378 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,398 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,418 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,450 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,468 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,496 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,500 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,516 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:31,533 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,066 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,100 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,111 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,160 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,186 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,193 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,225 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,242 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,257 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,267 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,283 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,296 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,300 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,323 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,326 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,351 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,380 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,400 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,426 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,440 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-09-28T13:09:32,465 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-09-28T13:09:32,466 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-09-28T13:09:32,471 copying build/lib/abutils/bin/mafft_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:32,475 copying build/lib/abutils/bin/cdhit_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-09-28T13:09:32,479 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:32,481 copying build/lib/abutils/cl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:32,484 creating build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,485 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,488 creating build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-09-28T13:09:32,489 copying build/lib/abutils/plots/models/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-09-28T13:09:32,491 copying build/lib/abutils/plots/models/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-09-28T13:09:32,493 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,495 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,497 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,499 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,501 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,503 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,506 creating build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-09-28T13:09:32,507 copying build/lib/abutils/plots/mixins/hue.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-09-28T13:09:32,509 copying build/lib/abutils/plots/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-09-28T13:09:32,510 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,512 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,515 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,516 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,519 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,522 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-09-28T13:09:32,525 creating build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,526 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,528 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,532 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-09-28T13:09:32,533 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-09-28T13:09:32,535 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-09-28T13:09:32,537 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-09-28T13:09:32,539 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,542 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,544 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,546 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,549 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,551 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,553 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,556 copying build/lib/abutils/utils/pipeline.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,558 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,560 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,562 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,565 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,567 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,569 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,571 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,572 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,574 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,576 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-09-28T13:09:32,579 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:32,581 creating build/bdist.linux-armv7l/wheel/abutils/core 2023-09-28T13:09:32,582 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-09-28T13:09:32,585 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-09-28T13:09:32,588 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-09-28T13:09:32,591 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-09-28T13:09:32,593 creating build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,593 copying build/lib/abutils/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,596 copying build/lib/abutils/tests/test_cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,598 copying build/lib/abutils/tests/test_phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,601 copying build/lib/abutils/tests/test_clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,603 copying build/lib/abutils/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,606 copying build/lib/abutils/tests/test_color.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,608 copying build/lib/abutils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,609 copying build/lib/abutils/tests/test_utilities.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,611 copying build/lib/abutils/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-09-28T13:09:32,613 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils 2023-09-28T13:09:32,615 running install_egg_info 2023-09-28T13:09:32,648 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/abutils-0.4.3-py3.11.egg-info 2023-09-28T13:09:32,659 running install_scripts 2023-09-28T13:09:32,681 creating build/bdist.linux-armv7l/wheel/abutils-0.4.3.dist-info/WHEEL 2023-09-28T13:09:32,683 creating '/tmp/pip-wheel-g2_d1ke0/abutils-0.4.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-28T13:09:32,686 adding 'abutils/__init__.py' 2023-09-28T13:09:32,687 adding 'abutils/cl.py' 2023-09-28T13:09:32,689 adding 'abutils/io.py' 2023-09-28T13:09:32,691 adding 'abutils/pl.py' 2023-09-28T13:09:32,692 adding 'abutils/tl.py' 2023-09-28T13:09:32,693 adding 'abutils/version.py' 2023-09-28T13:09:32,721 adding 'abutils/bin/cdhit_darwin_amd64' 2023-09-28T13:09:32,749 adding 'abutils/bin/cdhit_darwin_arm64' 2023-09-28T13:09:32,774 adding 'abutils/bin/cdhit_linux_amd64' 2023-09-28T13:09:32,816 adding 'abutils/bin/fasttree_darwin_amd64' 2023-09-28T13:09:32,878 adding 'abutils/bin/fasttree_darwin_arm64' 2023-09-28T13:09:32,949 adding 'abutils/bin/fasttree_linux_amd64' 2023-09-28T13:09:32,962 adding 'abutils/bin/mafft_darwin' 2023-09-28T13:09:32,971 adding 'abutils/bin/mafft_linux' 2023-09-28T13:09:34,079 adding 'abutils/bin/mmseqs_darwin_amd64' 2023-09-28T13:09:43,622 adding 'abutils/bin/mmseqs_darwin_arm64' 2023-09-28T13:09:50,908 adding 'abutils/bin/mmseqs_linux_amd64' 2023-09-28T13:09:51,351 adding 'abutils/bin/muscle3_darwin' 2023-09-28T13:09:51,415 adding 'abutils/bin/muscle3_linux' 2023-09-28T13:09:51,593 adding 'abutils/bin/muscle_darwin_amd64' 2023-09-28T13:09:51,751 adding 'abutils/bin/muscle_darwin_arm64' 2023-09-28T13:09:52,268 adding 'abutils/bin/muscle_linux_amd64' 2023-09-28T13:09:52,365 adding 'abutils/bin/vsearch_darwin_amd64' 2023-09-28T13:09:52,432 adding 'abutils/bin/vsearch_darwin_arm64' 2023-09-28T13:09:52,746 adding 'abutils/bin/vsearch_linux_amd64' 2023-09-28T13:09:52,764 adding 'abutils/bin/mafft_darwin_amd64/in' 2023-09-28T13:09:52,765 adding 'abutils/bin/mafft_darwin_amd64/mafft.bat' 2023-09-28T13:09:52,776 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft' 2023-09-28T13:09:53,095 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle' 2023-09-28T13:09:53,260 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap' 2023-09-28T13:09:53,312 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen' 2023-09-28T13:09:55,604 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client' 2023-09-28T13:09:56,026 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast' 2023-09-28T13:09:56,198 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast' 2023-09-28T13:09:56,363 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7' 2023-09-28T13:09:56,522 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre' 2023-09-28T13:09:56,854 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr' 2023-09-28T13:09:56,943 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl' 2023-09-28T13:09:57,100 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter' 2023-09-28T13:09:57,389 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag' 2023-09-28T13:09:57,407 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext' 2023-09-28T13:09:57,566 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance' 2023-09-28T13:09:57,575 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1' 2023-09-28T13:09:57,858 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile' 2023-09-28T13:09:57,872 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1' 2023-09-28T13:09:57,874 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl' 2023-09-28T13:09:57,880 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex' 2023-09-28T13:09:58,177 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist' 2023-09-28T13:09:58,342 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap' 2023-09-28T13:09:58,515 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s' 2023-09-28T13:09:58,836 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair' 2023-09-28T13:09:59,151 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash' 2023-09-28T13:09:59,464 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign' 2023-09-28T13:09:59,606 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq' 2023-09-28T13:09:59,741 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu' 2023-09-28T13:09:59,878 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu' 2023-09-28T13:10:00,248 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score' 2023-09-28T13:10:00,257 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2023-09-28T13:10:00,302 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable' 2023-09-28T13:10:00,588 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore' 2023-09-28T13:10:00,729 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection' 2023-09-28T13:10:00,929 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5' 2023-09-28T13:10:01,392 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast' 2023-09-28T13:10:01,740 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast' 2023-09-28T13:10:02,358 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version' 2023-09-28T13:10:02,515 adding 'abutils/bin/mafft_darwin_arm64/in' 2023-09-28T13:10:02,517 adding 'abutils/bin/mafft_darwin_arm64/mafft.bat' 2023-09-28T13:10:02,531 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft' 2023-09-28T13:10:02,885 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle' 2023-09-28T13:10:03,051 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap' 2023-09-28T13:10:03,103 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen' 2023-09-28T13:10:05,381 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client' 2023-09-28T13:10:06,127 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast' 2023-09-28T13:10:06,497 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast' 2023-09-28T13:10:06,657 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7' 2023-09-28T13:10:06,815 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre' 2023-09-28T13:10:07,147 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr' 2023-09-28T13:10:07,224 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl' 2023-09-28T13:10:07,352 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter' 2023-09-28T13:10:07,642 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag' 2023-09-28T13:10:07,660 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext' 2023-09-28T13:10:07,819 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance' 2023-09-28T13:10:07,829 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1' 2023-09-28T13:10:08,111 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile' 2023-09-28T13:10:08,126 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1' 2023-09-28T13:10:08,128 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl' 2023-09-28T13:10:08,134 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex' 2023-09-28T13:10:08,431 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist' 2023-09-28T13:10:08,816 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap' 2023-09-28T13:10:08,987 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s' 2023-09-28T13:10:09,307 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair' 2023-09-28T13:10:09,616 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash' 2023-09-28T13:10:09,927 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign' 2023-09-28T13:10:10,074 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq' 2023-09-28T13:10:10,203 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu' 2023-09-28T13:10:10,340 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu' 2023-09-28T13:10:10,498 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score' 2023-09-28T13:10:10,508 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl' 2023-09-28T13:10:10,553 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable' 2023-09-28T13:10:10,867 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore' 2023-09-28T13:10:11,009 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection' 2023-09-28T13:10:11,174 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5' 2023-09-28T13:10:11,478 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast' 2023-09-28T13:10:11,827 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast' 2023-09-28T13:10:11,847 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version' 2023-09-28T13:10:11,851 adding 'abutils/bin/mafft_linux_amd64/mafft.bat' 2023-09-28T13:10:11,862 adding 'abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft' 2023-09-28T13:10:12,118 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle' 2023-09-28T13:10:12,302 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap' 2023-09-28T13:10:12,427 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen' 2023-09-28T13:10:12,437 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments' 2023-09-28T13:10:13,217 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client' 2023-09-28T13:10:13,254 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa' 2023-09-28T13:10:13,513 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast' 2023-09-28T13:10:13,698 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast' 2023-09-28T13:10:13,881 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7' 2023-09-28T13:10:14,062 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre' 2023-09-28T13:10:14,316 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr' 2023-09-28T13:10:14,459 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl' 2023-09-28T13:10:14,629 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter' 2023-09-28T13:10:14,869 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag' 2023-09-28T13:10:14,880 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3' 2023-09-28T13:10:14,984 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext' 2023-09-28T13:10:15,163 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance' 2023-09-28T13:10:15,172 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1' 2023-09-28T13:10:15,405 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile' 2023-09-28T13:10:15,417 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1' 2023-09-28T13:10:15,419 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl' 2023-09-28T13:10:15,523 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex' 2023-09-28T13:10:15,764 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist' 2023-09-28T13:10:15,947 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap' 2023-09-28T13:10:16,139 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s' 2023-09-28T13:10:16,391 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair' 2023-09-28T13:10:16,636 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash' 2023-09-28T13:10:16,886 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign' 2023-09-28T13:10:17,059 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq' 2023-09-28T13:10:17,230 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu' 2023-09-28T13:10:17,402 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu' 2023-09-28T13:10:17,581 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/score' 2023-09-28T13:10:17,591 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2023-09-28T13:10:17,709 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable' 2023-09-28T13:10:17,947 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore' 2023-09-28T13:10:18,120 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection' 2023-09-28T13:10:18,302 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5' 2023-09-28T13:10:18,547 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast' 2023-09-28T13:10:18,811 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast' 2023-09-28T13:10:18,924 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/version' 2023-09-28T13:10:18,931 adding 'abutils/core/__init__.py' 2023-09-28T13:10:18,936 adding 'abutils/core/lineage.py' 2023-09-28T13:10:18,940 adding 'abutils/core/pair.py' 2023-09-28T13:10:18,943 adding 'abutils/core/sequence.py' 2023-09-28T13:10:18,945 adding 'abutils/plots/__init__.py' 2023-09-28T13:10:18,948 adding 'abutils/plots/bar.py' 2023-09-28T13:10:18,949 adding 'abutils/plots/base.py' 2023-09-28T13:10:18,952 adding 'abutils/plots/data.py' 2023-09-28T13:10:18,955 adding 'abutils/plots/donut.py' 2023-09-28T13:10:18,958 adding 'abutils/plots/heatmap.py' 2023-09-28T13:10:18,964 adding 'abutils/plots/kde.py' 2023-09-28T13:10:18,967 adding 'abutils/plots/lineage.py' 2023-09-28T13:10:18,969 adding 'abutils/plots/ridge.py' 2023-09-28T13:10:18,971 adding 'abutils/plots/ring.py' 2023-09-28T13:10:18,974 adding 'abutils/plots/scatter.py' 2023-09-28T13:10:18,977 adding 'abutils/plots/summary.py' 2023-09-28T13:10:18,978 adding 'abutils/plots/utils.py' 2023-09-28T13:10:18,980 adding 'abutils/plots/mixins/__init__.py' 2023-09-28T13:10:18,981 adding 'abutils/plots/mixins/hue.py' 2023-09-28T13:10:18,983 adding 'abutils/plots/models/__init__.py' 2023-09-28T13:10:18,986 adding 'abutils/plots/models/data.py' 2023-09-28T13:10:18,989 adding 'abutils/tests/__init__.py' 2023-09-28T13:10:18,991 adding 'abutils/tests/test_alignment.py' 2023-09-28T13:10:18,992 adding 'abutils/tests/test_clonify.py' 2023-09-28T13:10:18,994 adding 'abutils/tests/test_cluster.py' 2023-09-28T13:10:18,996 adding 'abutils/tests/test_color.py' 2023-09-28T13:10:18,998 adding 'abutils/tests/test_pair.py' 2023-09-28T13:10:19,000 adding 'abutils/tests/test_phylo.py' 2023-09-28T13:10:19,002 adding 'abutils/tests/test_sequence.py' 2023-09-28T13:10:19,003 adding 'abutils/tests/test_utilities.py' 2023-09-28T13:10:19,005 adding 'abutils/tools/__init__.py' 2023-09-28T13:10:19,010 adding 'abutils/tools/alignment.py' 2023-09-28T13:10:19,015 adding 'abutils/tools/clonify.py' 2023-09-28T13:10:19,019 adding 'abutils/tools/cluster.py' 2023-09-28T13:10:19,024 adding 'abutils/tools/phylo.py' 2023-09-28T13:10:19,027 adding 'abutils/utils/__init__.py' 2023-09-28T13:10:19,034 adding 'abutils/utils/alignment.py' 2023-09-28T13:10:19,036 adding 'abutils/utils/circos.py' 2023-09-28T13:10:19,041 adding 'abutils/utils/cluster.py' 2023-09-28T13:10:19,043 adding 'abutils/utils/codons.py' 2023-09-28T13:10:19,045 adding 'abutils/utils/color.py' 2023-09-28T13:10:19,047 adding 'abutils/utils/convert.py' 2023-09-28T13:10:19,049 adding 'abutils/utils/database.py' 2023-09-28T13:10:19,051 adding 'abutils/utils/decorators.py' 2023-09-28T13:10:19,053 adding 'abutils/utils/germlines.py' 2023-09-28T13:10:19,055 adding 'abutils/utils/jobs.py' 2023-09-28T13:10:19,057 adding 'abutils/utils/log.py' 2023-09-28T13:10:19,059 adding 'abutils/utils/mongodb.py' 2023-09-28T13:10:19,063 adding 'abutils/utils/phylogeny.py' 2023-09-28T13:10:19,065 adding 'abutils/utils/pipeline.py' 2023-09-28T13:10:19,067 adding 'abutils/utils/progbar.py' 2023-09-28T13:10:19,069 adding 'abutils/utils/s3.py' 2023-09-28T13:10:19,071 adding 'abutils/utils/seqio.py' 2023-09-28T13:10:19,072 adding 'abutils/utils/ssh_tunnel.py' 2023-09-28T13:10:19,074 adding 'abutils/utils/utilities.py' 2023-09-28T13:10:19,076 adding 'abutils/utils/matrices/blosum62' 2023-09-28T13:10:19,077 adding 'abutils/utils/matrices/match1mismatch0' 2023-09-28T13:10:19,078 adding 'abutils/utils/matrices/match3mismatch2' 2023-09-28T13:10:19,080 adding 'abutils-0.4.3.dist-info/LICENSE' 2023-09-28T13:10:19,082 adding 'abutils-0.4.3.dist-info/METADATA' 2023-09-28T13:10:19,083 adding 'abutils-0.4.3.dist-info/WHEEL' 2023-09-28T13:10:19,084 adding 'abutils-0.4.3.dist-info/top_level.txt' 2023-09-28T13:10:19,087 adding 'abutils-0.4.3.dist-info/RECORD' 2023-09-28T13:10:20,340 removing build/bdist.linux-armv7l/wheel 2023-09-28T13:10:20,616 Building wheel for abutils (setup.py): finished with status 'done' 2023-09-28T13:10:22,789 Created wheel for abutils: filename=abutils-0.4.3-py3-none-any.whl size=94371086 sha256=5057eda1cd8d00800ffc6c3f7d9134301b04e1a27f67f2d2126809d2463da701 2023-09-28T13:10:22,791 Stored in directory: /tmp/pip-ephem-wheel-cache-r2_crwg2/wheels/58/04/3f/98df41e1b840a1a03528490fa8cc63fa03a2f810e75c3edd22 2023-09-28T13:10:22,835 Successfully built abutils 2023-09-28T13:10:25,036 Removed build tracker: '/tmp/pip-build-tracker-dhcfg4mj'