2023-09-28T22:07:25,090 Created temporary directory: /tmp/pip-build-tracker-1mqfa69l
2023-09-28T22:07:25,091 Initialized build tracking at /tmp/pip-build-tracker-1mqfa69l
2023-09-28T22:07:25,091 Created build tracker: /tmp/pip-build-tracker-1mqfa69l
2023-09-28T22:07:25,092 Entered build tracker: /tmp/pip-build-tracker-1mqfa69l
2023-09-28T22:07:25,092 Created temporary directory: /tmp/pip-wheel-r83hbgwv
2023-09-28T22:07:25,096 Created temporary directory: /tmp/pip-ephem-wheel-cache-ucjdkdod
2023-09-28T22:07:25,119 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-28T22:07:25,122 2 location(s) to search for versions of carrot-cdm:
2023-09-28T22:07:25,122 * https://pypi.org/simple/carrot-cdm/
2023-09-28T22:07:25,122 * https://www.piwheels.org/simple/carrot-cdm/
2023-09-28T22:07:25,123 Fetching project page and analyzing links: https://pypi.org/simple/carrot-cdm/
2023-09-28T22:07:25,124 Getting page https://pypi.org/simple/carrot-cdm/
2023-09-28T22:07:25,125 Found index url https://pypi.org/simple/
2023-09-28T22:07:25,376 Fetched page https://pypi.org/simple/carrot-cdm/ as application/vnd.pypi.simple.v1+json
2023-09-28T22:07:25,383   Found link https://files.pythonhosted.org/packages/cf/02/b81bc7e4313c59e0668d3ec5f76488f039d51e1a8b923dc5ac5dc8f4d756/carrot-cdm-0.0.0.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.0.0
2023-09-28T22:07:25,383   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/4e/8d/e709b8aa4bc9df1526cbb30fe4c71d3e507df3c0b0f824bbee7675a6e06d/carrot_cdm-0.0.0-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,384   Found link https://files.pythonhosted.org/packages/0e/e3/affc81e61878436f7d2c66b958f6eb1f0e33cc19348e004be7bc52985c1e/carrot-cdm-0.6.0.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.0
2023-09-28T22:07:25,385   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/82/dd/4fb04cc3f5c1c362d7859c990e95d3f58c3ebfefa26c95b7e17f7b4b7b7e/carrot_cdm-0.6.0-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,386   Found link https://files.pythonhosted.org/packages/b8/79/c84342f579c70b417a54072015fcbae71275277a585915438f88643a6887/carrot-cdm-0.6.1.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.1
2023-09-28T22:07:25,387   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/94/cf/0b0bf50f4b6cf2819f48e1489f9be5abaac7dbc4d433e0c329f696bc9912/carrot_cdm-0.6.1-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,388   Found link https://files.pythonhosted.org/packages/d2/e6/35a83c38911f022eef82b933a1e7610cfe422dbd54b2cd8e309137129098/carrot-cdm-0.6.2.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.2
2023-09-28T22:07:25,389   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/98/52/79da4ead031613a7771f1a81475820d6882beda6b38aadaf4c6dd53e2d3e/carrot_cdm-0.6.2-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,390   Found link https://files.pythonhosted.org/packages/23/b0/db2a8fc547b33b3fc771c8d6279f2fb8b5243404e8d22102725761b475b0/carrot-cdm-0.6.3.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.3
2023-09-28T22:07:25,390   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/c3/b8/434e4d5bd0e0e2796f8d2c964b4c3a013fd9aedbdb49344103c3e343267b/carrot_cdm-0.6.3-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,391   Found link https://files.pythonhosted.org/packages/b1/83/5de1b6064fb07a93efc463fe247a858b91a8a2f1fcca364608cae7a90a66/carrot-cdm-0.6.4.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.4
2023-09-28T22:07:25,392   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/bd/8b/26a705e135ae9a0ed826a82d56c85fbe9107e0bf72b8771877bcf5f8ef73/carrot_cdm-0.6.4-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,393   Found link https://files.pythonhosted.org/packages/6d/e2/1087ac4e72fae3be3fe6cc0ea691ef9c788bc85b53626a2c0b143851af64/carrot-cdm-0.6.5.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.5
2023-09-28T22:07:25,394   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/67/e8/b742af08f4d537d916d1d7c45c6b8e98a7bd75cf1f5aae4c6d5f51101f7f/carrot_cdm-0.6.5-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,395   Found link https://files.pythonhosted.org/packages/13/8f/3d15d22e51b15907a14ed8060d6b2d0dd64f1f87943a74202c18c1fda59a/carrot-cdm-0.6.6.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.6
2023-09-28T22:07:25,395   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/96/78/15a009f5a19360a22734921aa856187b7febb29b41b3e670b5ae9f5c2e40/carrot_cdm-0.6.6-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,396   Found link https://files.pythonhosted.org/packages/cd/c5/47490003c83c6e1ad6cf0d5e27d5be52aab1fb71467a07a6ae25f11a5d57/carrot-cdm-0.6.6.1.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.6.1
2023-09-28T22:07:25,397   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/92/ab/ca06891004f07d8507253df57106450006c7bc3efa9484b6e39314d7ba74/carrot_cdm-0.6.6.1-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,397   Found link https://files.pythonhosted.org/packages/77/04/7016325d3b2128c51e9b60fe0bd8b37bd99130c5f8a515066324ce586d94/carrot-cdm-0.6.7.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.7
2023-09-28T22:07:25,398   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/c2/4b/9375e7641ba0846edd5b7606ce555b43fc27f48ac0b6864a24178913897a/carrot_cdm-0.6.7-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,399   Found link https://files.pythonhosted.org/packages/13/0f/8322b12f037278f514efe7a55415155cce52983323874f7a5de81be6e7ce/carrot-cdm-0.6.8.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.8
2023-09-28T22:07:25,400   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/6d/83/daba2c6f8e2ef11d44b156a7b2221a3f467032277f1266453c7df4d78c21/carrot_cdm-0.6.8-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,401   Found link https://files.pythonhosted.org/packages/fb/4e/4cf8cdaf1e6e5b7a07489f71f2184b033be631470c7f5a010f20bf3d0e0e/carrot-cdm-0.6.9.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.9
2023-09-28T22:07:25,402   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/9f/47/d5e84984c21212d07f8f2dbe57268cceccf89f93cb65b56a22462fba5857/carrot_cdm-0.6.9-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,403   Found link https://files.pythonhosted.org/packages/80/a7/57e01738ca22c4ba87185bdb96d00580f75dc7e0cac225cdead26286d3bc/carrot-cdm-0.6.85.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.85
2023-09-28T22:07:25,404   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/3e/77/d990509caa7e08580d5645d6c6170b08a19b39e750090f96060dca7531d4/carrot_cdm-0.6.85-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,404   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/3e/f6/3227ddee3bdc384c24c7f0aacb5b972f86579b4b5cf68cccdf60b703ca80/carrot_cdm-0.6.86-py3.9.egg (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,405 Fetching project page and analyzing links: https://www.piwheels.org/simple/carrot-cdm/
2023-09-28T22:07:25,406 Getting page https://www.piwheels.org/simple/carrot-cdm/
2023-09-28T22:07:25,407 Found index url https://www.piwheels.org/simple/
2023-09-28T22:07:25,564 Fetched page https://www.piwheels.org/simple/carrot-cdm/ as text/html
2023-09-28T22:07:25,567   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.85-py3-none-any.whl#sha256=2e1d94fcfe8faaa0e9e6b33bd2ca79c9c50394cb8fcbe56f2b46c5e7a00d2b24 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,568   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.8-py3-none-any.whl#sha256=d4d791c61850b16d200cc4929b99b2a87c4ae75c58b07554281e8a7a3c28718b (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,568   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.7-py3-none-any.whl#sha256=7470effa789545cf1ed22dfe41bb784e79fc0899faa69a124bb904b21191a7a8 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,569   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.6.1-py3-none-any.whl#sha256=c30ac28c6611a765a71a49ca2eae6ea7d85f4436e190be2a9a3fe930f3172fb7 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,569   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.6-py3-none-any.whl#sha256=7b929bd8e4739196f58b7f29acf1bb9fc83b4df44358f2fb2475a82eea152147 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,570   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.5-py3-none-any.whl#sha256=b82bee6537f0c56b238713ef24fbdce1b2511391604261d38ab9a748f91746e7 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,570   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.4-py3-none-any.whl#sha256=b1c94312af88c21a3b1f965471a2b2bb76ab57d3d660217865c2dad5d1e4b99a (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,571   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.3-py3-none-any.whl#sha256=39239603bf82d193df75e74636f7c3c0f438ae9c1444c6d8435b5b4884a9d247 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2023-09-28T22:07:25,572 Skipping link: not a file: https://www.piwheels.org/simple/carrot-cdm/
2023-09-28T22:07:25,572 Skipping link: not a file: https://pypi.org/simple/carrot-cdm/
2023-09-28T22:07:25,592 Given no hashes to check 1 links for project 'carrot-cdm': discarding no candidates
2023-09-28T22:07:25,610 Collecting carrot-cdm==0.6.9
2023-09-28T22:07:25,612   Created temporary directory: /tmp/pip-unpack-o39u5km3
2023-09-28T22:07:25,823   Downloading carrot-cdm-0.6.9.tar.gz (73 kB)
2023-09-28T22:07:25,993   Added carrot-cdm==0.6.9 from https://files.pythonhosted.org/packages/fb/4e/4cf8cdaf1e6e5b7a07489f71f2184b033be631470c7f5a010f20bf3d0e0e/carrot-cdm-0.6.9.tar.gz to build tracker '/tmp/pip-build-tracker-1mqfa69l'
2023-09-28T22:07:25,995   Running setup.py (path:/tmp/pip-wheel-r83hbgwv/carrot-cdm_f0a01eb001c14821aed417c62f7f4f7f/setup.py) egg_info for package carrot-cdm
2023-09-28T22:07:25,996   Created temporary directory: /tmp/pip-pip-egg-info-dk27_cpc
2023-09-28T22:07:25,996   Preparing metadata (setup.py): started
2023-09-28T22:07:25,998   Running command python setup.py egg_info
2023-09-28T22:07:26,444   LICENSE
2023-09-28T22:07:26,444   PKG-INFO
2023-09-28T22:07:26,445   README.md
2023-09-28T22:07:26,445   carrot
2023-09-28T22:07:26,446   carrot_cdm.egg-info
2023-09-28T22:07:26,446   setup.cfg
2023-09-28T22:07:26,447   setup.py
2023-09-28T22:07:27,056   All documentation relating to the CaRROT-CDM builder can be found here:

2023-09-28T22:07:27,057   ## [https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/](https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/)

2023-09-28T22:07:27,058   running egg_info
2023-09-28T22:07:27,059   creating /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info
2023-09-28T22:07:27,081   writing /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/PKG-INFO
2023-09-28T22:07:27,085   writing dependency_links to /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/dependency_links.txt
2023-09-28T22:07:27,086   writing entry points to /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/entry_points.txt
2023-09-28T22:07:27,088   writing requirements to /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/requires.txt
2023-09-28T22:07:27,089   writing top-level names to /tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/top_level.txt
2023-09-28T22:07:27,090   writing manifest file '/tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/SOURCES.txt'
2023-09-28T22:07:27,172   reading manifest file '/tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/SOURCES.txt'
2023-09-28T22:07:27,173   adding license file 'LICENSE'
2023-09-28T22:07:27,176   writing manifest file '/tmp/pip-pip-egg-info-dk27_cpc/carrot_cdm.egg-info/SOURCES.txt'
2023-09-28T22:07:27,286   Preparing metadata (setup.py): finished with status 'done'
2023-09-28T22:07:27,289   Source in /tmp/pip-wheel-r83hbgwv/carrot-cdm_f0a01eb001c14821aed417c62f7f4f7f has version 0.6.9, which satisfies requirement carrot-cdm==0.6.9 from https://files.pythonhosted.org/packages/fb/4e/4cf8cdaf1e6e5b7a07489f71f2184b033be631470c7f5a010f20bf3d0e0e/carrot-cdm-0.6.9.tar.gz
2023-09-28T22:07:27,290   Removed carrot-cdm==0.6.9 from https://files.pythonhosted.org/packages/fb/4e/4cf8cdaf1e6e5b7a07489f71f2184b033be631470c7f5a010f20bf3d0e0e/carrot-cdm-0.6.9.tar.gz from build tracker '/tmp/pip-build-tracker-1mqfa69l'
2023-09-28T22:07:27,295 Created temporary directory: /tmp/pip-unpack-m1yse2d5
2023-09-28T22:07:27,296 Created temporary directory: /tmp/pip-unpack-xhc7dx08
2023-09-28T22:07:27,322 Building wheels for collected packages: carrot-cdm
2023-09-28T22:07:27,326   Created temporary directory: /tmp/pip-wheel-svf87tbq
2023-09-28T22:07:27,327   Building wheel for carrot-cdm (setup.py): started
2023-09-28T22:07:27,328   Destination directory: /tmp/pip-wheel-svf87tbq
2023-09-28T22:07:27,329   Running command python setup.py bdist_wheel
2023-09-28T22:07:27,733   All documentation relating to the CaRROT-CDM builder can be found here:

2023-09-28T22:07:27,734   ## [https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/](https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/)

2023-09-28T22:07:27,742   LICENSE
2023-09-28T22:07:27,743   PKG-INFO
2023-09-28T22:07:27,744   README.md
2023-09-28T22:07:27,744   carrot
2023-09-28T22:07:27,745   carrot_cdm.egg-info
2023-09-28T22:07:27,746   setup.cfg
2023-09-28T22:07:27,748   setup.py
2023-09-28T22:07:28,332   running bdist_wheel
2023-09-28T22:07:28,432   running build
2023-09-28T22:07:28,432   running build_py
2023-09-28T22:07:28,459   creating build
2023-09-28T22:07:28,460   creating build/lib
2023-09-28T22:07:28,461   creating build/lib/carrot
2023-09-28T22:07:28,462   copying carrot/_version.py -> build/lib/carrot
2023-09-28T22:07:28,464   copying carrot/__init__.py -> build/lib/carrot
2023-09-28T22:07:28,466   creating build/lib/carrot/analyses
2023-09-28T22:07:28,467   copying carrot/analyses/example_serology.py -> build/lib/carrot/analyses
2023-09-28T22:07:28,469   copying carrot/analyses/__init__.py -> build/lib/carrot/analyses
2023-09-28T22:07:28,471   creating build/lib/carrot/io
2023-09-28T22:07:28,472   copying carrot/io/common.py -> build/lib/carrot/io
2023-09-28T22:07:28,474   copying carrot/io/__init__.py -> build/lib/carrot/io
2023-09-28T22:07:28,477   creating build/lib/carrot/cli
2023-09-28T22:07:28,478   copying carrot/cli/cli.py -> build/lib/carrot/cli
2023-09-28T22:07:28,480   copying carrot/cli/__init__.py -> build/lib/carrot/cli
2023-09-28T22:07:28,482   creating build/lib/carrot/tools
2023-09-28T22:07:28,483   copying carrot/tools/dag.py -> build/lib/carrot/tools
2023-09-28T22:07:28,485   copying carrot/tools/metrics.py -> build/lib/carrot/tools
2023-09-28T22:07:28,488   copying carrot/tools/logger.py -> build/lib/carrot/tools
2023-09-28T22:07:28,490   copying carrot/tools/rules_helpers.py -> build/lib/carrot/tools
2023-09-28T22:07:28,492   copying carrot/tools/omopcdm.py -> build/lib/carrot/tools
2023-09-28T22:07:28,494   copying carrot/tools/file_helpers.py -> build/lib/carrot/tools
2023-09-28T22:07:28,497   copying carrot/tools/mappingrules.py -> build/lib/carrot/tools
2023-09-28T22:07:28,499   copying carrot/tools/profiling.py -> build/lib/carrot/tools
2023-09-28T22:07:28,501   copying carrot/tools/bash_helpers.py -> build/lib/carrot/tools
2023-09-28T22:07:28,503   copying carrot/tools/bclink_helpers.py -> build/lib/carrot/tools
2023-09-28T22:07:28,505   copying carrot/tools/__init__.py -> build/lib/carrot/tools
2023-09-28T22:07:28,508   creating build/lib/carrot/cdm
2023-09-28T22:07:28,509   copying carrot/cdm/decorators.py -> build/lib/carrot/cdm
2023-09-28T22:07:28,511   copying carrot/cdm/operations.py -> build/lib/carrot/cdm
2023-09-28T22:07:28,512   copying carrot/cdm/model.py -> build/lib/carrot/cdm
2023-09-28T22:07:28,515   copying carrot/cdm/__init__.py -> build/lib/carrot/cdm
2023-09-28T22:07:28,517   creating build/lib/carrot/io/plugins
2023-09-28T22:07:28,518   copying carrot/io/plugins/bclink.py -> build/lib/carrot/io/plugins
2023-09-28T22:07:28,520   copying carrot/io/plugins/local.py -> build/lib/carrot/io/plugins
2023-09-28T22:07:28,522   copying carrot/io/plugins/sql.py -> build/lib/carrot/io/plugins
2023-09-28T22:07:28,523   copying carrot/io/plugins/__init__.py -> build/lib/carrot/io/plugins
2023-09-28T22:07:28,525   creating build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,526   copying carrot/cli/subcommands/get.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,528   copying carrot/cli/subcommands/search.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,530   copying carrot/cli/subcommands/etl.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,533   copying carrot/cli/subcommands/run.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,535   copying carrot/cli/subcommands/display.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,538   copying carrot/cli/subcommands/info.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,540   copying carrot/cli/subcommands/generate.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,544   copying carrot/cli/subcommands/airflow.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,548   copying carrot/cli/subcommands/pseudonymise.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,552   copying carrot/cli/subcommands/__init__.py -> build/lib/carrot/cli/subcommands
2023-09-28T22:07:28,557   creating build/lib/carrot/tools/extract
2023-09-28T22:07:28,560   copying carrot/tools/extract/templates.py -> build/lib/carrot/tools/extract
2023-09-28T22:07:28,566   copying carrot/tools/extract/__init__.py -> build/lib/carrot/tools/extract
2023-09-28T22:07:28,575   creating build/lib/carrot/cdm/objects
2023-09-28T22:07:28,577   copying carrot/cdm/objects/common.py -> build/lib/carrot/cdm/objects
2023-09-28T22:07:28,581   copying carrot/cdm/objects/__init__.py -> build/lib/carrot/cdm/objects
2023-09-28T22:07:28,583   creating build/lib/carrot/cdm/classes
2023-09-28T22:07:28,584   copying carrot/cdm/classes/__init__.py -> build/lib/carrot/cdm/classes
2023-09-28T22:07:28,586   creating build/lib/carrot/cdm/objects/versions
2023-09-28T22:07:28,587   copying carrot/cdm/objects/versions/__init__.py -> build/lib/carrot/cdm/objects/versions
2023-09-28T22:07:28,589   creating build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,590   copying carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,592   copying carrot/cdm/objects/versions/v5_3_1/drug_exposure.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,594   copying carrot/cdm/objects/versions/v5_3_1/observation.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,596   copying carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,598   copying carrot/cdm/objects/versions/v5_3_1/measurement.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,599   copying carrot/cdm/objects/versions/v5_3_1/person.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,601   copying carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,603   copying carrot/cdm/objects/versions/v5_3_1/specimen.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,605   copying carrot/cdm/objects/versions/v5_3_1/__init__.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,606   copying carrot/cdm/objects/versions/v5_3_1/death.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,608   running egg_info
2023-09-28T22:07:28,665   writing carrot_cdm.egg-info/PKG-INFO
2023-09-28T22:07:28,671   writing dependency_links to carrot_cdm.egg-info/dependency_links.txt
2023-09-28T22:07:28,673   writing entry points to carrot_cdm.egg-info/entry_points.txt
2023-09-28T22:07:28,676   writing requirements to carrot_cdm.egg-info/requires.txt
2023-09-28T22:07:28,677   writing top-level names to carrot_cdm.egg-info/top_level.txt
2023-09-28T22:07:28,710   reading manifest file 'carrot_cdm.egg-info/SOURCES.txt'
2023-09-28T22:07:28,713   adding license file 'LICENSE'
2023-09-28T22:07:28,717   writing manifest file 'carrot_cdm.egg-info/SOURCES.txt'
2023-09-28T22:07:28,748   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-28T22:07:28,749   !!

2023-09-28T22:07:28,750           ********************************************************************************
2023-09-28T22:07:28,750           Please avoid running ``setup.py`` directly.
2023-09-28T22:07:28,751           Instead, use pypa/build, pypa/installer or other
2023-09-28T22:07:28,751           standards-based tools.

2023-09-28T22:07:28,752           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-28T22:07:28,753           ********************************************************************************

2023-09-28T22:07:28,754   !!
2023-09-28T22:07:28,754     self.initialize_options()
2023-09-28T22:07:28,773   installing to build/bdist.linux-armv7l/wheel
2023-09-28T22:07:28,774   running install
2023-09-28T22:07:28,798   running install_lib
2023-09-28T22:07:28,822   creating build/bdist.linux-armv7l
2023-09-28T22:07:28,823   creating build/bdist.linux-armv7l/wheel
2023-09-28T22:07:28,824   creating build/bdist.linux-armv7l/wheel/carrot
2023-09-28T22:07:28,825   copying build/lib/carrot/_version.py -> build/bdist.linux-armv7l/wheel/carrot
2023-09-28T22:07:28,827   creating build/bdist.linux-armv7l/wheel/carrot/analyses
2023-09-28T22:07:28,828   copying build/lib/carrot/analyses/example_serology.py -> build/bdist.linux-armv7l/wheel/carrot/analyses
2023-09-28T22:07:28,830   copying build/lib/carrot/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/analyses
2023-09-28T22:07:28,832   creating build/bdist.linux-armv7l/wheel/carrot/io
2023-09-28T22:07:28,833   copying build/lib/carrot/io/common.py -> build/bdist.linux-armv7l/wheel/carrot/io
2023-09-28T22:07:28,836   creating build/bdist.linux-armv7l/wheel/carrot/io/plugins
2023-09-28T22:07:28,837   copying build/lib/carrot/io/plugins/bclink.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2023-09-28T22:07:28,839   copying build/lib/carrot/io/plugins/local.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2023-09-28T22:07:28,842   copying build/lib/carrot/io/plugins/sql.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2023-09-28T22:07:28,844   copying build/lib/carrot/io/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2023-09-28T22:07:28,845   copying build/lib/carrot/io/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/io
2023-09-28T22:07:28,847   creating build/bdist.linux-armv7l/wheel/carrot/cli
2023-09-28T22:07:28,848   copying build/lib/carrot/cli/cli.py -> build/bdist.linux-armv7l/wheel/carrot/cli
2023-09-28T22:07:28,850   copying build/lib/carrot/cli/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cli
2023-09-28T22:07:28,852   creating build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,853   copying build/lib/carrot/cli/subcommands/get.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,855   copying build/lib/carrot/cli/subcommands/search.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,857   copying build/lib/carrot/cli/subcommands/etl.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,860   copying build/lib/carrot/cli/subcommands/run.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,863   copying build/lib/carrot/cli/subcommands/display.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,865   copying build/lib/carrot/cli/subcommands/info.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,867   copying build/lib/carrot/cli/subcommands/generate.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,869   copying build/lib/carrot/cli/subcommands/airflow.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,871   copying build/lib/carrot/cli/subcommands/pseudonymise.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,873   copying build/lib/carrot/cli/subcommands/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2023-09-28T22:07:28,875   creating build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,876   copying build/lib/carrot/tools/dag.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,878   copying build/lib/carrot/tools/metrics.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,880   copying build/lib/carrot/tools/logger.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,882   copying build/lib/carrot/tools/rules_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,884   copying build/lib/carrot/tools/omopcdm.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,886   copying build/lib/carrot/tools/file_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,888   copying build/lib/carrot/tools/mappingrules.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,890   copying build/lib/carrot/tools/profiling.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,892   creating build/bdist.linux-armv7l/wheel/carrot/tools/extract
2023-09-28T22:07:28,893   copying build/lib/carrot/tools/extract/templates.py -> build/bdist.linux-armv7l/wheel/carrot/tools/extract
2023-09-28T22:07:28,895   copying build/lib/carrot/tools/extract/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/tools/extract
2023-09-28T22:07:28,897   copying build/lib/carrot/tools/bash_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,899   copying build/lib/carrot/tools/bclink_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,902   copying build/lib/carrot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2023-09-28T22:07:28,904   creating build/bdist.linux-armv7l/wheel/carrot/cdm
2023-09-28T22:07:28,905   copying build/lib/carrot/cdm/decorators.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2023-09-28T22:07:28,907   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2023-09-28T22:07:28,908   copying build/lib/carrot/cdm/objects/common.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2023-09-28T22:07:28,911   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions
2023-09-28T22:07:28,912   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,913   copying build/lib/carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,915   copying build/lib/carrot/cdm/objects/versions/v5_3_1/drug_exposure.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,917   copying build/lib/carrot/cdm/objects/versions/v5_3_1/observation.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,919   copying build/lib/carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,921   copying build/lib/carrot/cdm/objects/versions/v5_3_1/measurement.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,922   copying build/lib/carrot/cdm/objects/versions/v5_3_1/person.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,924   copying build/lib/carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,926   copying build/lib/carrot/cdm/objects/versions/v5_3_1/specimen.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,928   copying build/lib/carrot/cdm/objects/versions/v5_3_1/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,930   copying build/lib/carrot/cdm/objects/versions/v5_3_1/death.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2023-09-28T22:07:28,931   copying build/lib/carrot/cdm/objects/versions/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions
2023-09-28T22:07:28,933   copying build/lib/carrot/cdm/objects/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2023-09-28T22:07:28,935   copying build/lib/carrot/cdm/operations.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2023-09-28T22:07:28,937   copying build/lib/carrot/cdm/model.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2023-09-28T22:07:28,940   creating build/bdist.linux-armv7l/wheel/carrot/cdm/classes
2023-09-28T22:07:28,941   copying build/lib/carrot/cdm/classes/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/classes
2023-09-28T22:07:28,943   copying build/lib/carrot/cdm/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2023-09-28T22:07:28,944   copying build/lib/carrot/__init__.py -> build/bdist.linux-armv7l/wheel/carrot
2023-09-28T22:07:28,946   running install_egg_info
2023-09-28T22:07:28,976   Copying carrot_cdm.egg-info to build/bdist.linux-armv7l/wheel/carrot_cdm-0.6.9-py3.11.egg-info
2023-09-28T22:07:28,989   running install_scripts
2023-09-28T22:07:29,007   creating build/bdist.linux-armv7l/wheel/carrot_cdm-0.6.9.dist-info/WHEEL
2023-09-28T22:07:29,009   creating '/tmp/pip-wheel-svf87tbq/carrot_cdm-0.6.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-28T22:07:29,011   adding 'carrot/__init__.py'
2023-09-28T22:07:29,012   adding 'carrot/_version.py'
2023-09-28T22:07:29,014   adding 'carrot/analyses/__init__.py'
2023-09-28T22:07:29,015   adding 'carrot/analyses/example_serology.py'
2023-09-28T22:07:29,017   adding 'carrot/cdm/__init__.py'
2023-09-28T22:07:29,019   adding 'carrot/cdm/decorators.py'
2023-09-28T22:07:29,023   adding 'carrot/cdm/model.py'
2023-09-28T22:07:29,025   adding 'carrot/cdm/operations.py'
2023-09-28T22:07:29,026   adding 'carrot/cdm/classes/__init__.py'
2023-09-28T22:07:29,028   adding 'carrot/cdm/objects/__init__.py'
2023-09-28T22:07:29,031   adding 'carrot/cdm/objects/common.py'
2023-09-28T22:07:29,033   adding 'carrot/cdm/objects/versions/__init__.py'
2023-09-28T22:07:29,034   adding 'carrot/cdm/objects/versions/v5_3_1/__init__.py'
2023-09-28T22:07:29,035   adding 'carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py'
2023-09-28T22:07:29,037   adding 'carrot/cdm/objects/versions/v5_3_1/death.py'
2023-09-28T22:07:29,038   adding 'carrot/cdm/objects/versions/v5_3_1/drug_exposure.py'
2023-09-28T22:07:29,039   adding 'carrot/cdm/objects/versions/v5_3_1/measurement.py'
2023-09-28T22:07:29,040   adding 'carrot/cdm/objects/versions/v5_3_1/observation.py'
2023-09-28T22:07:29,042   adding 'carrot/cdm/objects/versions/v5_3_1/person.py'
2023-09-28T22:07:29,043   adding 'carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py'
2023-09-28T22:07:29,044   adding 'carrot/cdm/objects/versions/v5_3_1/specimen.py'
2023-09-28T22:07:29,045   adding 'carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py'
2023-09-28T22:07:29,047   adding 'carrot/cli/__init__.py'
2023-09-28T22:07:29,048   adding 'carrot/cli/cli.py'
2023-09-28T22:07:29,049   adding 'carrot/cli/subcommands/__init__.py'
2023-09-28T22:07:29,050   adding 'carrot/cli/subcommands/airflow.py'
2023-09-28T22:07:29,052   adding 'carrot/cli/subcommands/display.py'
2023-09-28T22:07:29,057   adding 'carrot/cli/subcommands/etl.py'
2023-09-28T22:07:29,060   adding 'carrot/cli/subcommands/generate.py'
2023-09-28T22:07:29,062   adding 'carrot/cli/subcommands/get.py'
2023-09-28T22:07:29,063   adding 'carrot/cli/subcommands/info.py'
2023-09-28T22:07:29,064   adding 'carrot/cli/subcommands/pseudonymise.py'
2023-09-28T22:07:29,069   adding 'carrot/cli/subcommands/run.py'
2023-09-28T22:07:29,071   adding 'carrot/cli/subcommands/search.py'
2023-09-28T22:07:29,072   adding 'carrot/io/__init__.py'
2023-09-28T22:07:29,074   adding 'carrot/io/common.py'
2023-09-28T22:07:29,076   adding 'carrot/io/plugins/__init__.py'
2023-09-28T22:07:29,077   adding 'carrot/io/plugins/bclink.py'
2023-09-28T22:07:29,078   adding 'carrot/io/plugins/local.py'
2023-09-28T22:07:29,080   adding 'carrot/io/plugins/sql.py'
2023-09-28T22:07:29,082   adding 'carrot/tools/__init__.py'
2023-09-28T22:07:29,083   adding 'carrot/tools/bash_helpers.py'
2023-09-28T22:07:29,085   adding 'carrot/tools/bclink_helpers.py'
2023-09-28T22:07:29,087   adding 'carrot/tools/dag.py'
2023-09-28T22:07:29,089   adding 'carrot/tools/file_helpers.py'
2023-09-28T22:07:29,090   adding 'carrot/tools/logger.py'
2023-09-28T22:07:29,092   adding 'carrot/tools/mappingrules.py'
2023-09-28T22:07:29,093   adding 'carrot/tools/metrics.py'
2023-09-28T22:07:29,094   adding 'carrot/tools/omopcdm.py'
2023-09-28T22:07:29,096   adding 'carrot/tools/profiling.py'
2023-09-28T22:07:29,097   adding 'carrot/tools/rules_helpers.py'
2023-09-28T22:07:29,099   adding 'carrot/tools/extract/__init__.py'
2023-09-28T22:07:29,100   adding 'carrot/tools/extract/templates.py'
2023-09-28T22:07:29,102   adding 'carrot_cdm-0.6.9.dist-info/LICENSE'
2023-09-28T22:07:29,103   adding 'carrot_cdm-0.6.9.dist-info/METADATA'
2023-09-28T22:07:29,104   adding 'carrot_cdm-0.6.9.dist-info/WHEEL'
2023-09-28T22:07:29,105   adding 'carrot_cdm-0.6.9.dist-info/entry_points.txt'
2023-09-28T22:07:29,106   adding 'carrot_cdm-0.6.9.dist-info/top_level.txt'
2023-09-28T22:07:29,107   adding 'carrot_cdm-0.6.9.dist-info/RECORD'
2023-09-28T22:07:29,110   removing build/bdist.linux-armv7l/wheel
2023-09-28T22:07:29,238   Building wheel for carrot-cdm (setup.py): finished with status 'done'
2023-09-28T22:07:29,242   Created wheel for carrot-cdm: filename=carrot_cdm-0.6.9-py3-none-any.whl size=91818 sha256=96df110d4366842eaf7ddb1fbf77bee1e9b31ec591ed9e0574dbd14f30dd88d6
2023-09-28T22:07:29,243   Stored in directory: /tmp/pip-ephem-wheel-cache-ucjdkdod/wheels/4a/bd/37/d09bfe613566e653f4b060a667f326c534bf36c247c82d8f12
2023-09-28T22:07:29,254 Successfully built carrot-cdm
2023-09-28T22:07:29,259 Removed build tracker: '/tmp/pip-build-tracker-1mqfa69l'