2023-09-29T05:21:19,991 Created temporary directory: /tmp/pip-build-tracker-xxo_gapy 2023-09-29T05:21:19,992 Initialized build tracking at /tmp/pip-build-tracker-xxo_gapy 2023-09-29T05:21:19,993 Created build tracker: /tmp/pip-build-tracker-xxo_gapy 2023-09-29T05:21:19,993 Entered build tracker: /tmp/pip-build-tracker-xxo_gapy 2023-09-29T05:21:19,994 Created temporary directory: /tmp/pip-wheel-cyvglf3y 2023-09-29T05:21:19,997 Created temporary directory: /tmp/pip-ephem-wheel-cache-c700i7pt 2023-09-29T05:21:20,020 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-29T05:21:20,024 2 location(s) to search for versions of sigprofilerassignment: 2023-09-29T05:21:20,024 * https://pypi.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,024 * https://www.piwheels.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,025 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,025 Getting page https://pypi.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,027 Found index url https://pypi.org/simple/ 2023-09-29T05:21:20,243 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2023-09-29T05:21:20,255 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,255 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2023-09-29T05:21:20,256 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,257 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2023-09-29T05:21:20,257 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,258 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2023-09-29T05:21:20,259 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,259 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2023-09-29T05:21:20,260 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,261 Found link 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https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,264 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2023-09-29T05:21:20,264 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/8d/ce/b3007d83ebaad0c5f16d68fc825dcce815d70081f135a950caf8b6a21972/SigProfilerAssignment-0.0.9-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,265 Found link https://files.pythonhosted.org/packages/5e/3a/5f620dd06f38b080d13d9c07487b1f927908e895c6d0078fd31e1774d819/SigProfilerAssignment-0.0.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.9 2023-09-29T05:21:20,265 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-09-29T05:21:20,268 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,268 Found link https://files.pythonhosted.org/packages/28/37/2ec84d1c1ad80c2a61214e735ae775d41a35ef5af4c79fbfc1a304003819/SigProfilerAssignment-0.0.12.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.12 2023-09-29T05:21:20,269 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7a/8e/e93001206882013104acbe9fbc9ee58b4422d73e080574da3e317e6c48d4/SigProfilerAssignment-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,270 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,272 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2023-09-29T05:21:20,273 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d8/27/852104d5cca8ece5586c5bbccd402376b51d1255460eb67540ae51a234d0/SigProfilerAssignment-0.0.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,273 Found link https://files.pythonhosted.org/packages/09/cf/960349c3a4e334416759693bdf0fbe9e03671da4866c0cb51cd83e70e887/SigProfilerAssignment-0.0.16.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.16 2023-09-29T05:21:20,274 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-09-29T05:21:20,276 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,277 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2023-09-29T05:21:20,277 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,278 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,281 Found link https://files.pythonhosted.org/packages/22/ab/8c5ef4325bc74b85006c590c76b3a315ece43ade098fab738ef785e8f2c7/SigProfilerAssignment-0.0.22.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.22 2023-09-29T05:21:20,282 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/37/1c/95d8594a43cac1bf505b57a3ce7e010e6ef768809a17854100552161d7ca/SigProfilerAssignment-0.0.23-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,282 Found link https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.23 2023-09-29T05:21:20,283 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-09-29T05:21:20,285 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/2a/d8/0c7e78b20a45989134be0ab354e8d5f117bc0e80d51a6a561f826dfb0ec7/SigProfilerAssignment-0.0.26-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,285 Found link https://files.pythonhosted.org/packages/43/6e/64e7d4710161d01ace0ad3fabed226b9ff317ed433baa44888b885189730/SigProfilerAssignment-0.0.26.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.26 2023-09-29T05:21:20,286 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/df/ee/54e9e81d7b8b9fe1d36fede9ca20abcea90f20c6ade4fb1ddf54f5d64e7e/SigProfilerAssignment-0.0.27-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,287 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,289 Found link https://files.pythonhosted.org/packages/45/e2/196c5bb6ca652002f8211a4baf32159b6895b6c471879fff23e20f1bcb2a/SigProfilerAssignment-0.0.29.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.29 2023-09-29T05:21:20,290 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/36/4c/a81556468f296ef5cbc3c748db5eca42eb0e1efde79aa006e07ef7c2bbbd/SigProfilerAssignment-0.0.30-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,291 Found link https://files.pythonhosted.org/packages/61/57/2f345259de271d4379ca486cb26e5c417eec03f97c58d5daee1d91a43635/SigProfilerAssignment-0.0.30.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.30 2023-09-29T05:21:20,291 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d5/88/7e17aa3c8232099c379d07f51c4ac7ad1694125403a23fb77c2501e25c49/SigProfilerAssignment-0.0.31-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,292 Found link https://files.pythonhosted.org/packages/e3/53/7a29cc2cbeb53edd8e3f5f97d32779882b48c1f59b21d2fcc792a0ddaf55/SigProfilerAssignment-0.0.31.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.31 2023-09-29T05:21:20,292 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/32/db/088602b559a61dbc9b370c4e90dfcbab426e403ce631fb4ebd0766a40f4e/SigProfilerAssignment-0.0.32-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,293 Found link https://files.pythonhosted.org/packages/47/25/a5b3f4c8d68565857e55a22d2d5533497b8d5368e8de583ac856ae738d8a/SigProfilerAssignment-0.0.32.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.32 2023-09-29T05:21:20,294 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,294 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,295 Found index url https://www.piwheels.org/simple/ 2023-09-29T05:21:20,492 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2023-09-29T05:21:20,501 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.31-py3-none-any.whl#sha256=97ddabe3d59bd9869b08197533de72b5629731c08e4af286687a41c75a0a1e02 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,502 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.30-py3-none-any.whl#sha256=2a0e46bbe5b504f6b44dd3bc605a60b02d764e4462cef9fe2d34c3b7bc904d44 (from 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https://www.piwheels.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,518 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-09-29T05:21:20,519 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,519 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2023-09-29T05:21:20,542 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2023-09-29T05:21:20,561 Collecting sigprofilerassignment==0.0.32 2023-09-29T05:21:20,564 Created temporary directory: /tmp/pip-unpack-vwnno6cl 2023-09-29T05:21:21,215 Downloading SigProfilerAssignment-0.0.32.tar.gz (4.6 MB) 2023-09-29T05:21:22,756 Added sigprofilerassignment==0.0.32 from https://files.pythonhosted.org/packages/47/25/a5b3f4c8d68565857e55a22d2d5533497b8d5368e8de583ac856ae738d8a/SigProfilerAssignment-0.0.32.tar.gz to build tracker '/tmp/pip-build-tracker-xxo_gapy' 2023-09-29T05:21:22,759 Running setup.py (path:/tmp/pip-wheel-cyvglf3y/sigprofilerassignment_3b38e8aba7e646f88c27147b0858bdfc/setup.py) egg_info for package sigprofilerassignment 2023-09-29T05:21:22,759 Created temporary directory: /tmp/pip-pip-egg-info-_71zi2ez 2023-09-29T05:21:22,760 Preparing metadata (setup.py): started 2023-09-29T05:21:22,761 Running command python setup.py egg_info 2023-09-29T05:21:23,794 running egg_info 2023-09-29T05:21:23,795 creating /tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info 2023-09-29T05:21:23,819 writing /tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/PKG-INFO 2023-09-29T05:21:23,824 writing dependency_links to /tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/dependency_links.txt 2023-09-29T05:21:23,826 writing requirements to /tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/requires.txt 2023-09-29T05:21:23,827 writing top-level names to /tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/top_level.txt 2023-09-29T05:21:23,828 writing manifest file '/tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-09-29T05:21:23,902 reading manifest file '/tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-09-29T05:21:23,903 reading manifest template 'MANIFEST.in' 2023-09-29T05:21:23,916 adding license file 'LICENSE.txt' 2023-09-29T05:21:23,922 writing manifest file '/tmp/pip-pip-egg-info-_71zi2ez/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-09-29T05:21:24,030 Preparing metadata (setup.py): finished with status 'done' 2023-09-29T05:21:24,035 Source in /tmp/pip-wheel-cyvglf3y/sigprofilerassignment_3b38e8aba7e646f88c27147b0858bdfc has version 0.0.32, which satisfies requirement sigprofilerassignment==0.0.32 from https://files.pythonhosted.org/packages/47/25/a5b3f4c8d68565857e55a22d2d5533497b8d5368e8de583ac856ae738d8a/SigProfilerAssignment-0.0.32.tar.gz 2023-09-29T05:21:24,036 Removed sigprofilerassignment==0.0.32 from https://files.pythonhosted.org/packages/47/25/a5b3f4c8d68565857e55a22d2d5533497b8d5368e8de583ac856ae738d8a/SigProfilerAssignment-0.0.32.tar.gz from build tracker '/tmp/pip-build-tracker-xxo_gapy' 2023-09-29T05:21:24,041 Created temporary directory: /tmp/pip-unpack-84jwks4h 2023-09-29T05:21:24,042 Created temporary directory: /tmp/pip-unpack-80jiclwx 2023-09-29T05:21:24,061 Building wheels for collected packages: sigprofilerassignment 2023-09-29T05:21:24,066 Created temporary directory: /tmp/pip-wheel-zqktgyft 2023-09-29T05:21:24,066 Building wheel for sigprofilerassignment (setup.py): started 2023-09-29T05:21:24,068 Destination directory: /tmp/pip-wheel-zqktgyft 2023-09-29T05:21:24,068 Running command python setup.py bdist_wheel 2023-09-29T05:21:25,073 running bdist_wheel 2023-09-29T05:21:25,166 running build 2023-09-29T05:21:25,167 running build_py 2023-09-29T05:21:25,193 creating build 2023-09-29T05:21:25,193 creating build/lib 2023-09-29T05:21:25,194 creating build/lib/SigProfilerAssignment 2023-09-29T05:21:25,195 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,197 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,199 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,202 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,206 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,208 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2023-09-29T05:21:25,210 running egg_info 2023-09-29T05:21:25,267 writing SigProfilerAssignment.egg-info/PKG-INFO 2023-09-29T05:21:25,271 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2023-09-29T05:21:25,273 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2023-09-29T05:21:25,274 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2023-09-29T05:21:25,300 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-09-29T05:21:25,305 reading manifest template 'MANIFEST.in' 2023-09-29T05:21:25,314 adding license file 'LICENSE.txt' 2023-09-29T05:21:25,322 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-09-29T05:21:25,327 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2023-09-29T05:21:25,328 !! 2023-09-29T05:21:25,329 ******************************************************************************** 2023-09-29T05:21:25,329 ############################ 2023-09-29T05:21:25,330 # Package would be ignored # 2023-09-29T05:21:25,330 ############################ 2023-09-29T05:21:25,331 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2023-09-29T05:21:25,331 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:25,332 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:25,333 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2023-09-29T05:21:25,333 to the `packages` configuration field. 2023-09-29T05:21:25,335 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:25,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:25,336 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:25,337 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:25,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:25,340 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2023-09-29T05:21:25,341 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2023-09-29T05:21:25,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:25,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:25,343 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:25,345 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:25,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:25,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:25,348 even if it does not contain any `.py` files. 2023-09-29T05:21:25,349 On the other hand, currently there is no concept of package data 2023-09-29T05:21:25,350 directory, all directories are treated like packages. 2023-09-29T05:21:25,350 ******************************************************************************** 2023-09-29T05:21:25,351 !! 2023-09-29T05:21:25,352 check.warn(importable) 2023-09-29T05:21:25,353 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2023-09-29T05:21:25,353 !! 2023-09-29T05:21:25,354 ******************************************************************************** 2023-09-29T05:21:25,355 ############################ 2023-09-29T05:21:25,355 # Package would be ignored # 2023-09-29T05:21:25,356 ############################ 2023-09-29T05:21:25,357 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2023-09-29T05:21:25,357 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:25,358 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:25,359 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2023-09-29T05:21:25,359 to the `packages` configuration field. 2023-09-29T05:21:25,361 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:25,361 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:25,362 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:25,362 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:25,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:25,365 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2023-09-29T05:21:25,365 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2023-09-29T05:21:25,366 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:25,366 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:25,367 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:25,369 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:25,370 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:25,372 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:25,372 even if it does not contain any `.py` files. 2023-09-29T05:21:25,373 On the other hand, currently there is no concept of package data 2023-09-29T05:21:25,374 directory, all directories are treated like packages. 2023-09-29T05:21:25,375 ******************************************************************************** 2023-09-29T05:21:25,376 !! 2023-09-29T05:21:25,377 check.warn(importable) 2023-09-29T05:21:25,381 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2023-09-29T05:21:25,382 !! 2023-09-29T05:21:25,383 ******************************************************************************** 2023-09-29T05:21:25,384 ############################ 2023-09-29T05:21:25,384 # Package would be ignored # 2023-09-29T05:21:25,385 ############################ 2023-09-29T05:21:25,386 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2023-09-29T05:21:25,386 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:25,387 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:25,408 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2023-09-29T05:21:25,564 to the `packages` configuration field. 2023-09-29T05:21:26,186 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,708 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,712 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,716 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2023-09-29T05:21:26,717 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2023-09-29T05:21:26,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,719 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,720 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,722 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,725 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,743 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,744 even if it does not contain any `.py` files. 2023-09-29T05:21:26,745 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,747 directory, all directories are treated like packages. 2023-09-29T05:21:26,748 ******************************************************************************** 2023-09-29T05:21:26,750 !! 2023-09-29T05:21:26,751 check.warn(importable) 2023-09-29T05:21:26,752 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2023-09-29T05:21:26,753 !! 2023-09-29T05:21:26,756 ******************************************************************************** 2023-09-29T05:21:26,757 ############################ 2023-09-29T05:21:26,758 # Package would be ignored # 2023-09-29T05:21:26,759 ############################ 2023-09-29T05:21:26,760 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2023-09-29T05:21:26,761 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,763 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,764 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2023-09-29T05:21:26,765 to the `packages` configuration field. 2023-09-29T05:21:26,767 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,769 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,771 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,772 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,775 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2023-09-29T05:21:26,777 already explicitly excluding 'SigProfilerAssignment.data' via 2023-09-29T05:21:26,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,779 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,780 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,782 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,789 even if it does not contain any `.py` files. 2023-09-29T05:21:26,790 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,793 directory, all directories are treated like packages. 2023-09-29T05:21:26,799 ******************************************************************************** 2023-09-29T05:21:26,800 !! 2023-09-29T05:21:26,801 check.warn(importable) 2023-09-29T05:21:26,802 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2023-09-29T05:21:26,802 !! 2023-09-29T05:21:26,804 ******************************************************************************** 2023-09-29T05:21:26,805 ############################ 2023-09-29T05:21:26,806 # Package would be ignored # 2023-09-29T05:21:26,807 ############################ 2023-09-29T05:21:26,808 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2023-09-29T05:21:26,808 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,810 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,811 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2023-09-29T05:21:26,812 to the `packages` configuration field. 2023-09-29T05:21:26,813 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,814 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,816 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,818 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2023-09-29T05:21:26,819 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2023-09-29T05:21:26,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,821 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,823 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,824 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,829 even if it does not contain any `.py` files. 2023-09-29T05:21:26,830 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,831 directory, all directories are treated like packages. 2023-09-29T05:21:26,832 ******************************************************************************** 2023-09-29T05:21:26,833 !! 2023-09-29T05:21:26,834 check.warn(importable) 2023-09-29T05:21:26,835 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2023-09-29T05:21:26,836 !! 2023-09-29T05:21:26,837 ******************************************************************************** 2023-09-29T05:21:26,838 ############################ 2023-09-29T05:21:26,838 # Package would be ignored # 2023-09-29T05:21:26,839 ############################ 2023-09-29T05:21:26,840 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2023-09-29T05:21:26,840 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,842 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,842 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2023-09-29T05:21:26,844 to the `packages` configuration field. 2023-09-29T05:21:26,845 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,846 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,846 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,848 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,851 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2023-09-29T05:21:26,852 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2023-09-29T05:21:26,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,854 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,854 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,856 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,861 even if it does not contain any `.py` files. 2023-09-29T05:21:26,862 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,863 directory, all directories are treated like packages. 2023-09-29T05:21:26,863 ******************************************************************************** 2023-09-29T05:21:26,865 !! 2023-09-29T05:21:26,865 check.warn(importable) 2023-09-29T05:21:26,866 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2023-09-29T05:21:26,866 !! 2023-09-29T05:21:26,867 ******************************************************************************** 2023-09-29T05:21:26,868 ############################ 2023-09-29T05:21:26,869 # Package would be ignored # 2023-09-29T05:21:26,869 ############################ 2023-09-29T05:21:26,870 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2023-09-29T05:21:26,870 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,871 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,872 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2023-09-29T05:21:26,873 to the `packages` configuration field. 2023-09-29T05:21:26,874 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,875 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,877 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,879 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,881 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2023-09-29T05:21:26,882 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2023-09-29T05:21:26,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,884 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,885 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,886 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,889 even if it does not contain any `.py` files. 2023-09-29T05:21:26,890 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,890 directory, all directories are treated like packages. 2023-09-29T05:21:26,891 ******************************************************************************** 2023-09-29T05:21:26,892 !! 2023-09-29T05:21:26,893 check.warn(importable) 2023-09-29T05:21:26,893 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2023-09-29T05:21:26,894 !! 2023-09-29T05:21:26,895 ******************************************************************************** 2023-09-29T05:21:26,896 ############################ 2023-09-29T05:21:26,896 # Package would be ignored # 2023-09-29T05:21:26,897 ############################ 2023-09-29T05:21:26,898 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2023-09-29T05:21:26,898 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,899 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,900 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2023-09-29T05:21:26,900 to the `packages` configuration field. 2023-09-29T05:21:26,902 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,903 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,903 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,904 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,905 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,907 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2023-09-29T05:21:26,907 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2023-09-29T05:21:26,908 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,910 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,911 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,914 even if it does not contain any `.py` files. 2023-09-29T05:21:26,915 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,916 directory, all directories are treated like packages. 2023-09-29T05:21:26,918 ******************************************************************************** 2023-09-29T05:21:26,920 !! 2023-09-29T05:21:26,920 check.warn(importable) 2023-09-29T05:21:26,921 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2023-09-29T05:21:26,923 !! 2023-09-29T05:21:26,924 ******************************************************************************** 2023-09-29T05:21:26,926 ############################ 2023-09-29T05:21:26,928 # Package would be ignored # 2023-09-29T05:21:26,929 ############################ 2023-09-29T05:21:26,929 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2023-09-29T05:21:26,930 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,931 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,931 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2023-09-29T05:21:26,932 to the `packages` configuration field. 2023-09-29T05:21:26,933 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,933 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,934 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,935 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,936 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,937 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2023-09-29T05:21:26,937 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2023-09-29T05:21:26,938 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,939 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,939 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,940 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,941 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,943 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,943 even if it does not contain any `.py` files. 2023-09-29T05:21:26,944 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,944 directory, all directories are treated like packages. 2023-09-29T05:21:26,944 ******************************************************************************** 2023-09-29T05:21:26,946 !! 2023-09-29T05:21:26,946 check.warn(importable) 2023-09-29T05:21:26,947 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2023-09-29T05:21:26,947 !! 2023-09-29T05:21:26,949 ******************************************************************************** 2023-09-29T05:21:26,949 ############################ 2023-09-29T05:21:26,950 # Package would be ignored # 2023-09-29T05:21:26,950 ############################ 2023-09-29T05:21:26,951 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2023-09-29T05:21:26,951 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,952 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,953 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2023-09-29T05:21:26,954 to the `packages` configuration field. 2023-09-29T05:21:26,955 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,956 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,957 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,959 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2023-09-29T05:21:26,960 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2023-09-29T05:21:26,960 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,961 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,961 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,962 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,963 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,965 even if it does not contain any `.py` files. 2023-09-29T05:21:26,965 On the other hand, currently there is no concept of package data 2023-09-29T05:21:26,966 directory, all directories are treated like packages. 2023-09-29T05:21:26,966 ******************************************************************************** 2023-09-29T05:21:26,967 !! 2023-09-29T05:21:26,967 check.warn(importable) 2023-09-29T05:21:26,968 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2023-09-29T05:21:26,969 !! 2023-09-29T05:21:26,970 ******************************************************************************** 2023-09-29T05:21:26,971 ############################ 2023-09-29T05:21:26,971 # Package would be ignored # 2023-09-29T05:21:26,972 ############################ 2023-09-29T05:21:26,973 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2023-09-29T05:21:26,974 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:26,976 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:26,977 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2023-09-29T05:21:26,977 to the `packages` configuration field. 2023-09-29T05:21:26,979 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:26,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:26,980 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:26,981 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:26,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:26,986 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2023-09-29T05:21:26,988 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2023-09-29T05:21:26,989 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:26,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:26,991 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:26,993 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:26,995 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:26,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:26,999 even if it does not contain any `.py` files. 2023-09-29T05:21:27,000 On the other hand, currently there is no concept of package data 2023-09-29T05:21:27,000 directory, all directories are treated like packages. 2023-09-29T05:21:27,001 ******************************************************************************** 2023-09-29T05:21:27,003 !! 2023-09-29T05:21:27,003 check.warn(importable) 2023-09-29T05:21:27,004 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2023-09-29T05:21:27,005 !! 2023-09-29T05:21:27,007 ******************************************************************************** 2023-09-29T05:21:27,007 ############################ 2023-09-29T05:21:27,008 # Package would be ignored # 2023-09-29T05:21:27,009 ############################ 2023-09-29T05:21:27,009 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2023-09-29T05:21:27,010 but it is absent from setuptools' `packages` configuration. 2023-09-29T05:21:27,011 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-29T05:21:27,012 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2023-09-29T05:21:27,012 to the `packages` configuration field. 2023-09-29T05:21:27,013 Alternatively, you can also rely on setuptools' discovery methods 2023-09-29T05:21:27,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-29T05:21:27,014 instead of `find_packages(...)`/`find:`). 2023-09-29T05:21:27,015 You can read more about "package discovery" on setuptools documentation page: 2023-09-29T05:21:27,017 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-29T05:21:27,018 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2023-09-29T05:21:27,018 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2023-09-29T05:21:27,019 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-29T05:21:27,019 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-29T05:21:27,020 combination with a more fine grained `package-data` configuration. 2023-09-29T05:21:27,021 You can read more about "package data files" on setuptools documentation page: 2023-09-29T05:21:27,022 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-29T05:21:27,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-29T05:21:27,024 even if it does not contain any `.py` files. 2023-09-29T05:21:27,025 On the other hand, currently there is no concept of package data 2023-09-29T05:21:27,025 directory, all directories are treated like packages. 2023-09-29T05:21:27,026 ******************************************************************************** 2023-09-29T05:21:27,027 !! 2023-09-29T05:21:27,027 check.warn(importable) 2023-09-29T05:21:27,028 creating build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,028 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,029 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,030 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,030 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,032 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,033 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,034 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,035 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:27,035 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:27,035 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:27,036 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:27,036 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-09-29T05:21:27,037 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-09-29T05:21:27,037 creating build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,038 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,039 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,040 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,041 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,041 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,042 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,042 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,043 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,043 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,044 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,044 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2023-09-29T05:21:27,045 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2023-09-29T05:21:27,046 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,046 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,046 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,047 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,047 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,048 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,049 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,050 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,050 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,051 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,051 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,052 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,052 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,052 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,053 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,054 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,055 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,057 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,058 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,059 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,061 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,061 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,062 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,063 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,064 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,065 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,066 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:27,069 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,070 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,072 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,073 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,074 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,074 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,074 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,075 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,076 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,077 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,077 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,078 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,078 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,079 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,079 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,081 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,090 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,101 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,106 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,110 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,148 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:27,160 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,161 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,165 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,169 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,174 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,179 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,183 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,186 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,192 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,198 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,201 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,204 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,214 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,220 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,223 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,226 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,236 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,252 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,256 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,258 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,267 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:27,281 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,286 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,299 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,310 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,317 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,323 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,328 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,333 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,338 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,342 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,345 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,347 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,353 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,358 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,361 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,364 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,379 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,592 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,596 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,601 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,608 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:27,615 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,617 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,623 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,630 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,636 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,642 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,647 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,651 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,661 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,672 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,898 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,903 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,912 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,922 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,927 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,933 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,943 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,954 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,959 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,964 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,970 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:27,976 creating build/lib/SigProfilerAssignment/data/tests 2023-09-29T05:21:27,977 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-09-29T05:21:27,979 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-09-29T05:21:27,993 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:27,995 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:27,998 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,001 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,004 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,007 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,010 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,013 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,014 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,019 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,026 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,031 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,040 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,075 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-29T05:21:28,076 !! 2023-09-29T05:21:28,077 ******************************************************************************** 2023-09-29T05:21:28,077 Please avoid running ``setup.py`` directly. 2023-09-29T05:21:28,077 Instead, use pypa/build, pypa/installer or other 2023-09-29T05:21:28,078 standards-based tools. 2023-09-29T05:21:28,079 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-29T05:21:28,079 ******************************************************************************** 2023-09-29T05:21:28,080 !! 2023-09-29T05:21:28,081 self.initialize_options() 2023-09-29T05:21:28,100 installing to build/bdist.linux-armv7l/wheel 2023-09-29T05:21:28,100 running install 2023-09-29T05:21:28,124 running install_lib 2023-09-29T05:21:28,148 creating build/bdist.linux-armv7l 2023-09-29T05:21:28,148 creating build/bdist.linux-armv7l/wheel 2023-09-29T05:21:28,150 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,151 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,152 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,154 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,156 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,158 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,161 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2023-09-29T05:21:28,162 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,163 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,165 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,168 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,170 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,172 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,174 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-09-29T05:21:28,176 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,177 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,184 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,189 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,192 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,197 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-09-29T05:21:28,202 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-09-29T05:21:28,202 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-09-29T05:21:28,211 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,216 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,218 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,220 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,222 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,230 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2023-09-29T05:21:28,231 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,233 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,239 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,242 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,246 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,251 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,254 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,256 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,262 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,265 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,268 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,273 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,278 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,281 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,283 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,285 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,290 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,292 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,295 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,299 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,302 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-09-29T05:21:28,307 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,308 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,312 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,315 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,318 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,321 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,323 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,328 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,331 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,333 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,336 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,340 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,343 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,348 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,351 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,354 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,359 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,363 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,366 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,370 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,373 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-09-29T05:21:28,378 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,379 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,382 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,385 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,388 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,391 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,435 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,440 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,443 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,449 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,451 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,454 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,457 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,461 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,464 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,466 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,471 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,475 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,480 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,482 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,486 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-09-29T05:21:28,489 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,490 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,493 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,496 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,498 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,501 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,505 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,511 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,514 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,517 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,520 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,525 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,528 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,533 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,538 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,541 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,548 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,550 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,553 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,555 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,561 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,564 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,569 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,572 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,575 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,582 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,584 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-09-29T05:21:28,588 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,589 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,591 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,594 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,596 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,601 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,604 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,608 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,614 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,616 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,621 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,624 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,628 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,631 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,633 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,636 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,638 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,642 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,648 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,652 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,657 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-09-29T05:21:28,660 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,662 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-09-29T05:21:28,666 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,668 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,669 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,673 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,676 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,677 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-09-29T05:21:28,681 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,682 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,688 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:28,690 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-09-29T05:21:28,691 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-09-29T05:21:28,705 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:28,708 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-09-29T05:21:28,710 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,713 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,715 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,718 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,720 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,723 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,725 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-09-29T05:21:28,727 running install_egg_info 2023-09-29T05:21:28,757 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.32-py3.11.egg-info 2023-09-29T05:21:28,771 running install_scripts 2023-09-29T05:21:28,796 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.32.dist-info/WHEEL 2023-09-29T05:21:28,799 creating '/tmp/pip-wheel-zqktgyft/SigProfilerAssignment-0.0.32-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-29T05:21:28,802 adding 'SigProfilerAssignment/Analyzer.py' 2023-09-29T05:21:28,804 adding 'SigProfilerAssignment/__init__.py' 2023-09-29T05:21:28,813 adding 'SigProfilerAssignment/decompose_subroutines.py' 2023-09-29T05:21:28,819 adding 'SigProfilerAssignment/decomposition.py' 2023-09-29T05:21:28,825 adding 'SigProfilerAssignment/single_sample.py' 2023-09-29T05:21:28,828 adding 'SigProfilerAssignment/version.py' 2023-09-29T05:21:28,833 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2023-09-29T05:21:28,836 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2023-09-29T05:21:28,839 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2023-09-29T05:21:28,842 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2023-09-29T05:21:28,845 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2023-09-29T05:21:28,848 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2023-09-29T05:21:28,851 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2023-09-29T05:21:28,867 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2023-09-29T05:21:28,872 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2023-09-29T05:21:28,873 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2023-09-29T05:21:28,980 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2023-09-29T05:21:28,988 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2023-09-29T05:21:28,989 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2023-09-29T05:21:28,992 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2023-09-29T05:21:28,994 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2023-09-29T05:21:29,008 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2023-09-29T05:21:29,050 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2023-09-29T05:21:29,055 adding 'SigProfilerAssignment/data/Samples.txt' 2023-09-29T05:21:29,057 adding 'SigProfilerAssignment/data/csvexample.csv' 2023-09-29T05:21:29,059 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2023-09-29T05:21:29,062 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2023-09-29T05:21:29,076 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2023-09-29T05:21:29,086 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2023-09-29T05:21:29,094 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,102 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2023-09-29T05:21:29,115 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,118 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2023-09-29T05:21:29,121 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2023-09-29T05:21:29,127 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2023-09-29T05:21:29,161 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2023-09-29T05:21:29,195 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,200 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2023-09-29T05:21:29,203 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2023-09-29T05:21:29,209 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2023-09-29T05:21:29,230 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2023-09-29T05:21:29,267 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2023-09-29T05:21:29,305 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,310 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2023-09-29T05:21:29,313 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2023-09-29T05:21:29,316 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2023-09-29T05:21:29,322 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2023-09-29T05:21:29,358 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2023-09-29T05:21:29,397 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,401 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2023-09-29T05:21:29,405 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2023-09-29T05:21:29,410 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2023-09-29T05:21:29,441 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2023-09-29T05:21:29,473 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2023-09-29T05:21:29,483 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2023-09-29T05:21:29,491 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,503 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2023-09-29T05:21:29,516 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,519 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2023-09-29T05:21:29,523 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2023-09-29T05:21:29,557 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2023-09-29T05:21:29,591 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,596 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2023-09-29T05:21:29,599 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2023-09-29T05:21:29,636 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2023-09-29T05:21:29,674 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,678 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2023-09-29T05:21:29,682 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2023-09-29T05:21:29,719 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2023-09-29T05:21:29,758 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,763 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2023-09-29T05:21:29,766 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2023-09-29T05:21:29,797 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2023-09-29T05:21:29,830 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2023-09-29T05:21:29,840 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2023-09-29T05:21:29,848 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2023-09-29T05:21:29,860 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2023-09-29T05:21:29,873 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2023-09-29T05:21:29,876 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2023-09-29T05:21:29,879 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2023-09-29T05:21:29,913 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2023-09-29T05:21:29,948 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2023-09-29T05:21:29,952 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2023-09-29T05:21:29,955 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2023-09-29T05:21:29,992 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2023-09-29T05:21:30,030 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2023-09-29T05:21:30,034 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2023-09-29T05:21:30,038 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2023-09-29T05:21:30,075 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2023-09-29T05:21:30,114 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2023-09-29T05:21:30,118 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2023-09-29T05:21:30,121 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2023-09-29T05:21:30,153 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2023-09-29T05:21:30,185 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2023-09-29T05:21:30,195 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2023-09-29T05:21:30,204 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2023-09-29T05:21:30,216 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2023-09-29T05:21:30,229 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2023-09-29T05:21:30,232 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2023-09-29T05:21:30,236 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2023-09-29T05:21:30,270 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2023-09-29T05:21:30,304 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2023-09-29T05:21:30,308 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2023-09-29T05:21:30,312 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2023-09-29T05:21:30,349 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2023-09-29T05:21:30,387 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2023-09-29T05:21:30,391 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2023-09-29T05:21:30,394 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2023-09-29T05:21:30,432 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2023-09-29T05:21:30,470 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2023-09-29T05:21:30,475 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2023-09-29T05:21:30,478 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2023-09-29T05:21:30,510 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2023-09-29T05:21:30,542 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2023-09-29T05:21:30,552 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2023-09-29T05:21:30,560 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2023-09-29T05:21:30,572 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2023-09-29T05:21:30,585 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2023-09-29T05:21:30,589 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2023-09-29T05:21:30,592 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2023-09-29T05:21:30,626 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2023-09-29T05:21:30,660 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2023-09-29T05:21:30,665 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2023-09-29T05:21:30,668 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2023-09-29T05:21:30,706 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2023-09-29T05:21:30,766 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2023-09-29T05:21:30,771 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2023-09-29T05:21:30,775 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2023-09-29T05:21:30,813 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2023-09-29T05:21:30,927 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2023-09-29T05:21:30,932 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2023-09-29T05:21:30,948 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2023-09-29T05:21:31,004 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2023-09-29T05:21:31,044 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2023-09-29T05:21:31,110 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2023-09-29T05:21:31,209 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2023-09-29T05:21:31,214 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2023-09-29T05:21:31,217 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2023-09-29T05:21:31,229 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2023-09-29T05:21:31,231 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2023-09-29T05:21:31,233 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2023-09-29T05:21:31,243 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2023-09-29T05:21:31,361 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2023-09-29T05:21:31,467 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2023-09-29T05:21:31,506 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2023-09-29T05:21:31,582 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2023-09-29T05:21:31,600 adding 'SigProfilerAssignment-0.0.32.dist-info/LICENSE.txt' 2023-09-29T05:21:31,602 adding 'SigProfilerAssignment-0.0.32.dist-info/METADATA' 2023-09-29T05:21:31,604 adding 'SigProfilerAssignment-0.0.32.dist-info/WHEEL' 2023-09-29T05:21:31,633 adding 'SigProfilerAssignment-0.0.32.dist-info/top_level.txt' 2023-09-29T05:21:31,636 adding 'SigProfilerAssignment-0.0.32.dist-info/RECORD' 2023-09-29T05:21:36,575 removing build/bdist.linux-armv7l/wheel 2023-09-29T05:21:36,870 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2023-09-29T05:21:36,931 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.32-py3-none-any.whl size=4676716 sha256=227dbec6add15230f646c36278ea288835ab52145d2be37d5b7ef7cd62c369d5 2023-09-29T05:21:36,932 Stored in directory: /tmp/pip-ephem-wheel-cache-c700i7pt/wheels/f8/18/f4/e27b535958810505a07bd8c830d6146c72a42f4e6c2980d7b6 2023-09-29T05:21:36,950 Successfully built sigprofilerassignment 2023-09-29T05:21:37,333 Removed build tracker: '/tmp/pip-build-tracker-xxo_gapy'