2023-09-29T23:59:36,828 Created temporary directory: /tmp/pip-build-tracker-mpgy3t78 2023-09-29T23:59:36,830 Initialized build tracking at /tmp/pip-build-tracker-mpgy3t78 2023-09-29T23:59:36,830 Created build tracker: /tmp/pip-build-tracker-mpgy3t78 2023-09-29T23:59:36,830 Entered build tracker: /tmp/pip-build-tracker-mpgy3t78 2023-09-29T23:59:36,831 Created temporary directory: /tmp/pip-wheel-_txpreu5 2023-09-29T23:59:36,834 Created temporary directory: /tmp/pip-ephem-wheel-cache-3xzj2fuq 2023-09-29T23:59:36,856 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-29T23:59:36,860 2 location(s) to search for versions of gqlib: 2023-09-29T23:59:36,860 * https://pypi.org/simple/gqlib/ 2023-09-29T23:59:36,860 * https://www.piwheels.org/simple/gqlib/ 2023-09-29T23:59:36,860 Fetching project page and analyzing links: https://pypi.org/simple/gqlib/ 2023-09-29T23:59:36,861 Getting page https://pypi.org/simple/gqlib/ 2023-09-29T23:59:36,863 Found index url https://pypi.org/simple/ 2023-09-29T23:59:37,118 Fetched page https://pypi.org/simple/gqlib/ as application/vnd.pypi.simple.v1+json 2023-09-29T23:59:37,120 Found link https://files.pythonhosted.org/packages/a5/26/1fb85708574f429a67cf7ebd09819706893e408c693c867248098c8b6bb2/gqlib-2.9.9.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.9.9.3 2023-09-29T23:59:37,121 Found link https://files.pythonhosted.org/packages/0d/5a/694f5a2ea4ee7048c32cdd2cb69c7f4835e5d8a43328f762434b770b7cfb/gqlib-2.10.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.10.0 2023-09-29T23:59:37,122 Found link https://files.pythonhosted.org/packages/18/a3/f599a42c49499622e4dddc2d7b9c699a728dee1ccead4bac6055ae72d9c1/gqlib-2.12.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.1 2023-09-29T23:59:37,122 Found link https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.2 2023-09-29T23:59:37,123 Found link https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.13.0 2023-09-29T23:59:37,124 Found link https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.0 2023-09-29T23:59:37,125 Found link https://files.pythonhosted.org/packages/b9/a3/7066b734916fa72d91a1f66b8813956a942a6ab87f4911741223f3535d6c/gqlib-2.14.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.1 2023-09-29T23:59:37,125 Found link https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.2 2023-09-29T23:59:37,126 Found link https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.3 2023-09-29T23:59:37,127 Fetching project page and analyzing links: https://www.piwheels.org/simple/gqlib/ 2023-09-29T23:59:37,128 Getting page https://www.piwheels.org/simple/gqlib/ 2023-09-29T23:59:37,129 Found index url https://www.piwheels.org/simple/ 2023-09-29T23:59:37,297 Fetched page https://www.piwheels.org/simple/gqlib/ as text/html 2023-09-29T23:59:37,300 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.14.1-py3-none-any.whl#sha256=8d84e8b5e5001fbfef92aeb77d9bdb8da1129550ee7f290af93d5d6d2d82ce66 (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,301 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.14.0-py3-none-any.whl#sha256=c41b281122c2b923b2d3c89f0465f171cbe007c915c27c6710476cd1fed98574 (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,301 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.13.0-py3-none-any.whl#sha256=dfafe4e4b53c04fb1a60312eb30a983e8031ffc28ce6891f90fb0b4cdf99de0f (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,302 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.2-py3-none-any.whl#sha256=0f647a2d442d1b4b2c523c7e2193362bfe81d4aba376bf2bbece35717eebd174 (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,303 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.1-py3-none-any.whl#sha256=f1fb244343d7ea0235837d6a1bd7c60c95f6755b1a2b831691e04f851b4e551b (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,303 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.10.0-py3-none-any.whl#sha256=393b7dc20a4d91ae690b4799f687ff2522c749d97cad0f98bf305f2817b1c0ea (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,304 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.9.9.3-py3-none-any.whl#sha256=2bd1fb961af8b28506ae8b437d5b9e7a5a5f0f88b956679b48a458e056fe35e9 (from https://www.piwheels.org/simple/gqlib/) 2023-09-29T23:59:37,304 Skipping link: not a file: https://www.piwheels.org/simple/gqlib/ 2023-09-29T23:59:37,305 Skipping link: not a file: https://pypi.org/simple/gqlib/ 2023-09-29T23:59:37,323 Given no hashes to check 1 links for project 'gqlib': discarding no candidates 2023-09-29T23:59:37,341 Collecting gqlib==2.14.2 2023-09-29T23:59:37,344 Created temporary directory: /tmp/pip-unpack-q7012hc4 2023-09-29T23:59:37,563 Downloading gqlib-2.14.2.tar.gz (103 kB) 2023-09-29T23:59:37,852 Added gqlib==2.14.2 from https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz to build tracker '/tmp/pip-build-tracker-mpgy3t78' 2023-09-29T23:59:37,854 Running setup.py (path:/tmp/pip-wheel-_txpreu5/gqlib_f1878b6f458a4d6ba616aeb5093255fa/setup.py) egg_info for package gqlib 2023-09-29T23:59:37,855 Created temporary directory: /tmp/pip-pip-egg-info-024r6y93 2023-09-29T23:59:37,855 Preparing metadata (setup.py): started 2023-09-29T23:59:37,857 Running command python setup.py egg_info 2023-09-29T23:59:38,312 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-29T23:59:38,313 !! 2023-09-29T23:59:38,314 ******************************************************************************** 2023-09-29T23:59:38,315 Usage of dash-separated 'description-file' will not be supported in future 2023-09-29T23:59:38,315 versions. Please use the underscore name 'description_file' instead. 2023-09-29T23:59:38,317 This deprecation is overdue, please update your project and remove deprecated 2023-09-29T23:59:38,317 calls to avoid build errors in the future. 2023-09-29T23:59:38,318 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-29T23:59:38,319 ******************************************************************************** 2023-09-29T23:59:38,320 !! 2023-09-29T23:59:38,321 opt = self.warn_dash_deprecation(opt, section) 2023-09-29T23:59:38,825 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-29T23:59:38,825 !! 2023-09-29T23:59:38,826 ******************************************************************************** 2023-09-29T23:59:38,827 Usage of dash-separated 'description-file' will not be supported in future 2023-09-29T23:59:38,828 versions. Please use the underscore name 'description_file' instead. 2023-09-29T23:59:38,829 This deprecation is overdue, please update your project and remove deprecated 2023-09-29T23:59:38,829 calls to avoid build errors in the future. 2023-09-29T23:59:38,831 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-29T23:59:38,831 ******************************************************************************** 2023-09-29T23:59:38,832 !! 2023-09-29T23:59:38,833 opt = self.warn_dash_deprecation(opt, section) 2023-09-29T23:59:38,863 running egg_info 2023-09-29T23:59:38,864 creating /tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info 2023-09-29T23:59:38,888 writing /tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/PKG-INFO 2023-09-29T23:59:38,891 writing dependency_links to /tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/dependency_links.txt 2023-09-29T23:59:38,893 writing requirements to /tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/requires.txt 2023-09-29T23:59:38,894 writing top-level names to /tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/top_level.txt 2023-09-29T23:59:38,895 writing manifest file '/tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/SOURCES.txt' 2023-09-29T23:59:38,983 reading manifest file '/tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/SOURCES.txt' 2023-09-29T23:59:38,984 reading manifest template 'MANIFEST.in' 2023-09-29T23:59:38,985 adding license file 'LICENSE' 2023-09-29T23:59:38,990 writing manifest file '/tmp/pip-pip-egg-info-024r6y93/gqlib.egg-info/SOURCES.txt' 2023-09-29T23:59:39,099 Preparing metadata (setup.py): finished with status 'done' 2023-09-29T23:59:39,103 Source in /tmp/pip-wheel-_txpreu5/gqlib_f1878b6f458a4d6ba616aeb5093255fa has version 2.14.2, which satisfies requirement gqlib==2.14.2 from https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz 2023-09-29T23:59:39,104 Removed gqlib==2.14.2 from https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz from build tracker '/tmp/pip-build-tracker-mpgy3t78' 2023-09-29T23:59:39,108 Created temporary directory: /tmp/pip-unpack-jg64i73h 2023-09-29T23:59:39,109 Created temporary directory: /tmp/pip-unpack-vuie9q3z 2023-09-29T23:59:39,116 Building wheels for collected packages: gqlib 2023-09-29T23:59:39,120 Created temporary directory: /tmp/pip-wheel-950ssy0e 2023-09-29T23:59:39,121 Building wheel for gqlib (setup.py): started 2023-09-29T23:59:39,122 Destination directory: /tmp/pip-wheel-950ssy0e 2023-09-29T23:59:39,123 Running command python setup.py bdist_wheel 2023-09-29T23:59:39,569 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-29T23:59:39,570 !! 2023-09-29T23:59:39,571 ******************************************************************************** 2023-09-29T23:59:39,571 Usage of dash-separated 'description-file' will not be supported in future 2023-09-29T23:59:39,572 versions. Please use the underscore name 'description_file' instead. 2023-09-29T23:59:39,573 This deprecation is overdue, please update your project and remove deprecated 2023-09-29T23:59:39,574 calls to avoid build errors in the future. 2023-09-29T23:59:39,575 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-29T23:59:39,575 ******************************************************************************** 2023-09-29T23:59:39,576 !! 2023-09-29T23:59:39,577 opt = self.warn_dash_deprecation(opt, section) 2023-09-29T23:59:40,090 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-29T23:59:40,091 !! 2023-09-29T23:59:40,092 ******************************************************************************** 2023-09-29T23:59:40,092 Usage of dash-separated 'description-file' will not be supported in future 2023-09-29T23:59:40,093 versions. Please use the underscore name 'description_file' instead. 2023-09-29T23:59:40,094 This deprecation is overdue, please update your project and remove deprecated 2023-09-29T23:59:40,095 calls to avoid build errors in the future. 2023-09-29T23:59:40,096 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-29T23:59:40,097 ******************************************************************************** 2023-09-29T23:59:40,098 !! 2023-09-29T23:59:40,099 opt = self.warn_dash_deprecation(opt, section) 2023-09-29T23:59:40,126 running bdist_wheel 2023-09-29T23:59:40,218 running build 2023-09-29T23:59:40,219 running build_py 2023-09-29T23:59:40,246 creating build 2023-09-29T23:59:40,247 creating build/lib 2023-09-29T23:59:40,248 creating build/lib/gqlib_oldx 2023-09-29T23:59:40,249 copying gqlib_oldx/__init__.py -> build/lib/gqlib_oldx 2023-09-29T23:59:40,251 copying gqlib_oldx/__main__.py -> build/lib/gqlib_oldx 2023-09-29T23:59:40,253 copying gqlib_oldx/handle_args.py -> build/lib/gqlib_oldx 2023-09-29T23:59:40,256 creating build/lib/gqlib_old 2023-09-29T23:59:40,257 copying gqlib_old/__init__.py -> build/lib/gqlib_old 2023-09-29T23:59:40,259 copying gqlib_old/__main__.py -> build/lib/gqlib_old 2023-09-29T23:59:40,261 copying gqlib_old/handle_args.py -> build/lib/gqlib_old 2023-09-29T23:59:40,264 creating build/lib/gqlib 2023-09-29T23:59:40,265 copying gqlib/__init__.py -> build/lib/gqlib 2023-09-29T23:59:40,267 copying gqlib/__main__.py -> build/lib/gqlib 2023-09-29T23:59:40,270 copying gqlib/handle_args.py -> build/lib/gqlib 2023-09-29T23:59:40,273 creating build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,274 copying gqlib_oldx/counters/count_manager.py -> build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,276 copying gqlib_oldx/counters/seq_counter.py -> build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,278 copying gqlib_oldx/counters/__init__.py -> build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,280 copying gqlib_oldx/counters/region_counter.py -> build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,282 copying gqlib_oldx/counters/alignment_counter.py -> build/lib/gqlib_oldx/counters 2023-09-29T23:59:40,284 creating build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,286 copying gqlib_oldx/bin/__init__.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,287 copying gqlib_oldx/bin/build_bed_database.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,290 copying gqlib_oldx/bin/collate_studies.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,292 copying gqlib_oldx/bin/collate_counts.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,294 copying gqlib_oldx/bin/split_table.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,296 copying gqlib_oldx/bin/build_domain_database.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,298 copying gqlib_oldx/bin/build_gene_database.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,301 copying gqlib_oldx/bin/build_custom_database.py -> build/lib/gqlib_oldx/bin 2023-09-29T23:59:40,303 creating build/lib/gqlib_oldx/annotation 2023-09-29T23:59:40,305 copying gqlib_oldx/annotation/__init__.py -> build/lib/gqlib_oldx/annotation 2023-09-29T23:59:40,307 copying gqlib_oldx/annotation/count_annotator.py -> build/lib/gqlib_oldx/annotation 2023-09-29T23:59:40,309 copying gqlib_oldx/annotation/count_writer.py -> build/lib/gqlib_oldx/annotation 2023-09-29T23:59:40,312 creating build/lib/gqlib_oldx/alignment 2023-09-29T23:59:40,313 copying gqlib_oldx/alignment/__init__.py -> build/lib/gqlib_oldx/alignment 2023-09-29T23:59:40,315 copying gqlib_oldx/alignment/aln_group.py -> build/lib/gqlib_oldx/alignment 2023-09-29T23:59:40,317 copying gqlib_oldx/alignment/pysam_alignment_processor.py -> build/lib/gqlib_oldx/alignment 2023-09-29T23:59:40,319 copying gqlib_oldx/alignment/bamreader.py -> build/lib/gqlib_oldx/alignment 2023-09-29T23:59:40,322 creating build/lib/gqlib_oldx/profilers 2023-09-29T23:59:40,323 copying gqlib_oldx/profilers/gene_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-29T23:59:40,325 copying gqlib_oldx/profilers/__init__.py -> build/lib/gqlib_oldx/profilers 2023-09-29T23:59:40,327 copying gqlib_oldx/profilers/region_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-29T23:59:40,329 copying gqlib_oldx/profilers/feature_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-29T23:59:40,332 creating build/lib/gqlib_oldx/db 2023-09-29T23:59:40,333 copying gqlib_oldx/db/database.py -> build/lib/gqlib_oldx/db 2023-09-29T23:59:40,335 copying gqlib_oldx/db/__init__.py -> build/lib/gqlib_oldx/db 2023-09-29T23:59:40,337 copying gqlib_oldx/db/db_import.py -> build/lib/gqlib_oldx/db 2023-09-29T23:59:40,339 copying gqlib_oldx/db/gff_dbm.py -> build/lib/gqlib_oldx/db 2023-09-29T23:59:40,341 copying gqlib_oldx/db/annotation_db.py -> build/lib/gqlib_oldx/db 2023-09-29T23:59:40,344 creating build/lib/gqlib_oldx/db/models 2023-09-29T23:59:40,345 copying gqlib_oldx/db/models/__init__.py -> build/lib/gqlib_oldx/db/models 2023-09-29T23:59:40,347 copying gqlib_oldx/db/models/meta.py -> build/lib/gqlib_oldx/db/models 2023-09-29T23:59:40,348 copying gqlib_oldx/db/models/db.py -> build/lib/gqlib_oldx/db/models 2023-09-29T23:59:40,351 creating build/lib/gqlib_old/counters 2023-09-29T23:59:40,352 copying gqlib_old/counters/count_manager.py -> build/lib/gqlib_old/counters 2023-09-29T23:59:40,354 copying gqlib_old/counters/seq_counter.py -> build/lib/gqlib_old/counters 2023-09-29T23:59:40,356 copying gqlib_old/counters/__init__.py -> build/lib/gqlib_old/counters 2023-09-29T23:59:40,358 copying gqlib_old/counters/region_counter.py -> build/lib/gqlib_old/counters 2023-09-29T23:59:40,360 copying gqlib_old/counters/alignment_counter.py -> build/lib/gqlib_old/counters 2023-09-29T23:59:40,362 creating build/lib/gqlib_old/bin 2023-09-29T23:59:40,363 copying gqlib_old/bin/db_collate.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,366 copying gqlib_old/bin/__init__.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,367 copying gqlib_old/bin/build_pg3_database.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,370 copying gqlib_old/bin/build_bed_database.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,372 copying gqlib_old/bin/collate_studies.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,374 copying gqlib_old/bin/db_collate2.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,376 copying gqlib_old/bin/collate_counts.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,378 copying gqlib_old/bin/split_table.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,380 copying gqlib_old/bin/build_domain_database.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,382 copying gqlib_old/bin/build_gene_database.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,385 copying gqlib_old/bin/build_custom_database.py -> build/lib/gqlib_old/bin 2023-09-29T23:59:40,387 creating build/lib/gqlib_old/annotation 2023-09-29T23:59:40,389 copying gqlib_old/annotation/__init__.py -> build/lib/gqlib_old/annotation 2023-09-29T23:59:40,390 copying gqlib_old/annotation/count_annotator.py -> build/lib/gqlib_old/annotation 2023-09-29T23:59:40,393 copying gqlib_old/annotation/count_writer.py -> build/lib/gqlib_old/annotation 2023-09-29T23:59:40,396 creating build/lib/gqlib_old/alignment 2023-09-29T23:59:40,397 copying gqlib_old/alignment/__init__.py -> build/lib/gqlib_old/alignment 2023-09-29T23:59:40,399 copying gqlib_old/alignment/aln_group.py -> build/lib/gqlib_old/alignment 2023-09-29T23:59:40,401 copying gqlib_old/alignment/pysam_alignment_processor.py -> build/lib/gqlib_old/alignment 2023-09-29T23:59:40,403 copying gqlib_old/alignment/bamreader.py -> build/lib/gqlib_old/alignment 2023-09-29T23:59:40,406 creating build/lib/gqlib_old/profilers 2023-09-29T23:59:40,407 copying gqlib_old/profilers/gene_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-29T23:59:40,410 copying gqlib_old/profilers/__init__.py -> build/lib/gqlib_old/profilers 2023-09-29T23:59:40,412 copying gqlib_old/profilers/region_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-29T23:59:40,414 copying gqlib_old/profilers/feature_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-29T23:59:40,417 creating build/lib/gqlib_old/db 2023-09-29T23:59:40,418 copying gqlib_old/db/database.py -> build/lib/gqlib_old/db 2023-09-29T23:59:40,420 copying gqlib_old/db/__init__.py -> build/lib/gqlib_old/db 2023-09-29T23:59:40,422 copying gqlib_old/db/db_import.py -> build/lib/gqlib_old/db 2023-09-29T23:59:40,425 copying gqlib_old/db/gff_dbm.py -> build/lib/gqlib_old/db 2023-09-29T23:59:40,427 copying gqlib_old/db/annotation_db.py -> build/lib/gqlib_old/db 2023-09-29T23:59:40,430 creating build/lib/gqlib_old/db/models 2023-09-29T23:59:40,431 copying gqlib_old/db/models/__init__.py -> build/lib/gqlib_old/db/models 2023-09-29T23:59:40,433 copying gqlib_old/db/models/meta.py -> build/lib/gqlib_old/db/models 2023-09-29T23:59:40,435 copying gqlib_old/db/models/db.py -> build/lib/gqlib_old/db/models 2023-09-29T23:59:40,438 creating build/lib/gqlib/counters 2023-09-29T23:59:40,439 copying gqlib/counters/count_manager.py -> build/lib/gqlib/counters 2023-09-29T23:59:40,441 copying gqlib/counters/seq_counter.py -> build/lib/gqlib/counters 2023-09-29T23:59:40,443 copying gqlib/counters/__init__.py -> build/lib/gqlib/counters 2023-09-29T23:59:40,445 copying gqlib/counters/region_counter.py -> build/lib/gqlib/counters 2023-09-29T23:59:40,447 copying gqlib/counters/alignment_counter.py -> build/lib/gqlib/counters 2023-09-29T23:59:40,450 creating build/lib/gqlib/runners 2023-09-29T23:59:40,451 copying gqlib/runners/__init__.py -> build/lib/gqlib/runners 2023-09-29T23:59:40,453 copying gqlib/runners/alignment_runner.py -> build/lib/gqlib/runners 2023-09-29T23:59:40,456 creating build/lib/gqlib/ui 2023-09-29T23:59:40,457 copying gqlib/ui/__init__.py -> build/lib/gqlib/ui 2023-09-29T23:59:40,459 copying gqlib/ui/validation.py -> build/lib/gqlib/ui 2023-09-29T23:59:40,462 creating build/lib/gqlib/bin 2023-09-29T23:59:40,463 copying gqlib/bin/db_collate.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,466 copying gqlib/bin/__init__.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,467 copying gqlib/bin/build_bed_database.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,470 copying gqlib/bin/collate_studies.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,472 copying gqlib/bin/collate_counts.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,475 copying gqlib/bin/split_table.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,477 copying gqlib/bin/build_domain_database.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,479 copying gqlib/bin/build_gene_database.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,482 copying gqlib/bin/build_custom_database.py -> build/lib/gqlib/bin 2023-09-29T23:59:40,485 creating build/lib/gqlib/annotation 2023-09-29T23:59:40,486 copying gqlib/annotation/__init__.py -> build/lib/gqlib/annotation 2023-09-29T23:59:40,488 copying gqlib/annotation/count_annotator.py -> build/lib/gqlib/annotation 2023-09-29T23:59:40,491 copying gqlib/annotation/count_writer.py -> build/lib/gqlib/annotation 2023-09-29T23:59:40,494 creating build/lib/gqlib/alignment 2023-09-29T23:59:40,495 copying gqlib/alignment/__init__.py -> build/lib/gqlib/alignment 2023-09-29T23:59:40,497 copying gqlib/alignment/aln_group.py -> build/lib/gqlib/alignment 2023-09-29T23:59:40,499 copying gqlib/alignment/pysam_alignment_processor.py -> build/lib/gqlib/alignment 2023-09-29T23:59:40,501 copying gqlib/alignment/bamreader.py -> build/lib/gqlib/alignment 2023-09-29T23:59:40,504 creating build/lib/gqlib/profilers 2023-09-29T23:59:40,506 copying gqlib/profilers/gene_quantifier.py -> build/lib/gqlib/profilers 2023-09-29T23:59:40,508 copying gqlib/profilers/__init__.py -> build/lib/gqlib/profilers 2023-09-29T23:59:40,510 copying gqlib/profilers/region_quantifier.py -> build/lib/gqlib/profilers 2023-09-29T23:59:40,513 copying gqlib/profilers/feature_quantifier.py -> build/lib/gqlib/profilers 2023-09-29T23:59:40,516 creating build/lib/gqlib/db 2023-09-29T23:59:40,517 copying gqlib/db/database.py -> build/lib/gqlib/db 2023-09-29T23:59:40,519 copying gqlib/db/__init__.py -> build/lib/gqlib/db 2023-09-29T23:59:40,521 copying gqlib/db/db_import.py -> build/lib/gqlib/db 2023-09-29T23:59:40,524 copying gqlib/db/gff_dbm.py -> build/lib/gqlib/db 2023-09-29T23:59:40,526 copying gqlib/db/annotation_db.py -> build/lib/gqlib/db 2023-09-29T23:59:40,529 creating build/lib/gqlib/db/models 2023-09-29T23:59:40,531 copying gqlib/db/models/__init__.py -> build/lib/gqlib/db/models 2023-09-29T23:59:40,533 copying gqlib/db/models/meta.py -> build/lib/gqlib/db/models 2023-09-29T23:59:40,535 copying gqlib/db/models/db.py -> build/lib/gqlib/db/models 2023-09-29T23:59:40,537 running egg_info 2023-09-29T23:59:40,593 writing gqlib.egg-info/PKG-INFO 2023-09-29T23:59:40,597 writing dependency_links to gqlib.egg-info/dependency_links.txt 2023-09-29T23:59:40,598 writing requirements to gqlib.egg-info/requires.txt 2023-09-29T23:59:40,600 writing top-level names to gqlib.egg-info/top_level.txt 2023-09-29T23:59:40,640 reading manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-29T23:59:40,644 reading manifest template 'MANIFEST.in' 2023-09-29T23:59:40,646 adding license file 'LICENSE' 2023-09-29T23:59:40,652 writing manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-29T23:59:40,690 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-29T23:59:40,691 !! 2023-09-29T23:59:40,692 ******************************************************************************** 2023-09-29T23:59:40,692 Please avoid running ``setup.py`` directly. 2023-09-29T23:59:40,693 Instead, use pypa/build, pypa/installer or other 2023-09-29T23:59:40,693 standards-based tools. 2023-09-29T23:59:40,694 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-29T23:59:40,694 ******************************************************************************** 2023-09-29T23:59:40,695 !! 2023-09-29T23:59:40,696 self.initialize_options() 2023-09-29T23:59:40,719 installing to build/bdist.linux-armv7l/wheel 2023-09-29T23:59:40,720 running install 2023-09-29T23:59:40,744 running install_lib 2023-09-29T23:59:40,768 creating build/bdist.linux-armv7l 2023-09-29T23:59:40,769 creating build/bdist.linux-armv7l/wheel 2023-09-29T23:59:40,771 creating build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-29T23:59:40,772 copying build/lib/gqlib_oldx/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-29T23:59:40,774 copying build/lib/gqlib_oldx/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-29T23:59:40,777 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,778 copying build/lib/gqlib_oldx/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,781 copying build/lib/gqlib_oldx/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,783 copying build/lib/gqlib_oldx/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,785 copying build/lib/gqlib_oldx/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,787 copying build/lib/gqlib_oldx/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-29T23:59:40,789 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,790 copying build/lib/gqlib_oldx/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,792 copying build/lib/gqlib_oldx/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,794 copying build/lib/gqlib_oldx/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,797 copying build/lib/gqlib_oldx/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,799 copying build/lib/gqlib_oldx/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,801 copying build/lib/gqlib_oldx/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,803 copying build/lib/gqlib_oldx/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,806 copying build/lib/gqlib_oldx/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-29T23:59:40,808 copying build/lib/gqlib_oldx/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-29T23:59:40,811 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-29T23:59:40,812 copying build/lib/gqlib_oldx/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-29T23:59:40,814 copying build/lib/gqlib_oldx/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-29T23:59:40,817 copying build/lib/gqlib_oldx/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-29T23:59:40,820 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-29T23:59:40,821 copying build/lib/gqlib_oldx/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-29T23:59:40,823 copying build/lib/gqlib_oldx/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-29T23:59:40,825 copying build/lib/gqlib_oldx/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-29T23:59:40,827 copying build/lib/gqlib_oldx/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-29T23:59:40,830 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-29T23:59:40,831 copying build/lib/gqlib_oldx/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-29T23:59:40,833 copying build/lib/gqlib_oldx/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-29T23:59:40,835 copying build/lib/gqlib_oldx/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-29T23:59:40,837 copying build/lib/gqlib_oldx/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-29T23:59:40,840 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,842 copying build/lib/gqlib_oldx/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,843 copying build/lib/gqlib_oldx/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,845 copying build/lib/gqlib_oldx/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,848 copying build/lib/gqlib_oldx/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,850 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-29T23:59:40,851 copying build/lib/gqlib_oldx/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-29T23:59:40,853 copying build/lib/gqlib_oldx/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-29T23:59:40,855 copying build/lib/gqlib_oldx/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-29T23:59:40,857 copying build/lib/gqlib_oldx/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-29T23:59:40,860 creating build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-29T23:59:40,861 copying build/lib/gqlib_old/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-29T23:59:40,864 copying build/lib/gqlib_old/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-29T23:59:40,866 creating build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,868 copying build/lib/gqlib_old/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,870 copying build/lib/gqlib_old/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,872 copying build/lib/gqlib_old/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,874 copying build/lib/gqlib_old/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,877 copying build/lib/gqlib_old/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-29T23:59:40,879 creating build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,880 copying build/lib/gqlib_old/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,883 copying build/lib/gqlib_old/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,884 copying build/lib/gqlib_old/bin/build_pg3_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,887 copying build/lib/gqlib_old/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,889 copying build/lib/gqlib_old/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,891 copying build/lib/gqlib_old/bin/db_collate2.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,893 copying build/lib/gqlib_old/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,895 copying build/lib/gqlib_old/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,897 copying build/lib/gqlib_old/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,900 copying build/lib/gqlib_old/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,902 copying build/lib/gqlib_old/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-29T23:59:40,905 copying build/lib/gqlib_old/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-29T23:59:40,908 creating build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-29T23:59:40,909 copying build/lib/gqlib_old/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-29T23:59:40,911 copying build/lib/gqlib_old/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-29T23:59:40,913 copying build/lib/gqlib_old/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-29T23:59:40,916 creating build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-29T23:59:40,917 copying build/lib/gqlib_old/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-29T23:59:40,919 copying build/lib/gqlib_old/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-29T23:59:40,922 copying build/lib/gqlib_old/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-29T23:59:40,924 copying build/lib/gqlib_old/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-29T23:59:40,927 creating build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-29T23:59:40,928 copying build/lib/gqlib_old/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-29T23:59:40,930 copying build/lib/gqlib_old/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-29T23:59:40,932 copying build/lib/gqlib_old/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-29T23:59:40,935 copying build/lib/gqlib_old/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-29T23:59:40,938 creating build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,939 copying build/lib/gqlib_old/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,941 copying build/lib/gqlib_old/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,943 copying build/lib/gqlib_old/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,945 copying build/lib/gqlib_old/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,948 creating build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-29T23:59:40,950 copying build/lib/gqlib_old/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-29T23:59:40,951 copying build/lib/gqlib_old/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-29T23:59:40,953 copying build/lib/gqlib_old/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-29T23:59:40,956 copying build/lib/gqlib_old/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-29T23:59:40,959 creating build/bdist.linux-armv7l/wheel/gqlib 2023-09-29T23:59:40,960 copying build/lib/gqlib/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-29T23:59:40,962 copying build/lib/gqlib/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-29T23:59:40,965 creating build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,966 copying build/lib/gqlib/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,968 copying build/lib/gqlib/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,970 copying build/lib/gqlib/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,972 copying build/lib/gqlib/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,974 copying build/lib/gqlib/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-29T23:59:40,976 creating build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-29T23:59:40,977 copying build/lib/gqlib/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-29T23:59:40,979 copying build/lib/gqlib/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-29T23:59:40,982 creating build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-29T23:59:40,983 copying build/lib/gqlib/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-29T23:59:40,985 copying build/lib/gqlib/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-29T23:59:40,987 creating build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,988 copying build/lib/gqlib/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,991 copying build/lib/gqlib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,993 copying build/lib/gqlib/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,995 copying build/lib/gqlib/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,997 copying build/lib/gqlib/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:40,999 copying build/lib/gqlib/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:41,001 copying build/lib/gqlib/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:41,004 copying build/lib/gqlib/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:41,007 copying build/lib/gqlib/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-29T23:59:41,009 copying build/lib/gqlib/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-29T23:59:41,012 creating build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-29T23:59:41,013 copying build/lib/gqlib/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-29T23:59:41,015 copying build/lib/gqlib/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-29T23:59:41,017 copying build/lib/gqlib/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-29T23:59:41,020 creating build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-29T23:59:41,022 copying build/lib/gqlib/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-29T23:59:41,024 copying build/lib/gqlib/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-29T23:59:41,026 copying build/lib/gqlib/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-29T23:59:41,028 copying build/lib/gqlib/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-29T23:59:41,031 creating build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-29T23:59:41,032 copying build/lib/gqlib/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-29T23:59:41,034 copying build/lib/gqlib/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-29T23:59:41,036 copying build/lib/gqlib/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-29T23:59:41,038 copying build/lib/gqlib/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-29T23:59:41,041 creating build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,042 copying build/lib/gqlib/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,044 copying build/lib/gqlib/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,046 copying build/lib/gqlib/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,049 copying build/lib/gqlib/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,051 creating build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-29T23:59:41,053 copying build/lib/gqlib/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-29T23:59:41,054 copying build/lib/gqlib/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-29T23:59:41,057 copying build/lib/gqlib/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-29T23:59:41,059 copying build/lib/gqlib/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-29T23:59:41,061 running install_egg_info 2023-09-29T23:59:41,091 Copying gqlib.egg-info to build/bdist.linux-armv7l/wheel/gqlib-2.14.2-py3.11.egg-info 2023-09-29T23:59:41,102 running install_scripts 2023-09-29T23:59:41,115 creating build/bdist.linux-armv7l/wheel/gqlib-2.14.2.dist-info/WHEEL 2023-09-29T23:59:41,118 creating '/tmp/pip-wheel-950ssy0e/gqlib-2.14.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-29T23:59:41,121 adding 'gqlib/__init__.py' 2023-09-29T23:59:41,123 adding 'gqlib/__main__.py' 2023-09-29T23:59:41,125 adding 'gqlib/handle_args.py' 2023-09-29T23:59:41,127 adding 'gqlib/alignment/__init__.py' 2023-09-29T23:59:41,129 adding 'gqlib/alignment/aln_group.py' 2023-09-29T23:59:41,132 adding 'gqlib/alignment/bamreader.py' 2023-09-29T23:59:41,134 adding 'gqlib/alignment/pysam_alignment_processor.py' 2023-09-29T23:59:41,136 adding 'gqlib/annotation/__init__.py' 2023-09-29T23:59:41,139 adding 'gqlib/annotation/count_annotator.py' 2023-09-29T23:59:41,141 adding 'gqlib/annotation/count_writer.py' 2023-09-29T23:59:41,143 adding 'gqlib/bin/__init__.py' 2023-09-29T23:59:41,145 adding 'gqlib/bin/build_bed_database.py' 2023-09-29T23:59:41,147 adding 'gqlib/bin/build_custom_database.py' 2023-09-29T23:59:41,149 adding 'gqlib/bin/build_domain_database.py' 2023-09-29T23:59:41,151 adding 'gqlib/bin/build_gene_database.py' 2023-09-29T23:59:41,153 adding 'gqlib/bin/collate_counts.py' 2023-09-29T23:59:41,155 adding 'gqlib/bin/collate_studies.py' 2023-09-29T23:59:41,157 adding 'gqlib/bin/db_collate.py' 2023-09-29T23:59:41,159 adding 'gqlib/bin/split_table.py' 2023-09-29T23:59:41,161 adding 'gqlib/counters/__init__.py' 2023-09-29T23:59:41,163 adding 'gqlib/counters/alignment_counter.py' 2023-09-29T23:59:41,165 adding 'gqlib/counters/count_manager.py' 2023-09-29T23:59:41,167 adding 'gqlib/counters/region_counter.py' 2023-09-29T23:59:41,168 adding 'gqlib/counters/seq_counter.py' 2023-09-29T23:59:41,170 adding 'gqlib/db/__init__.py' 2023-09-29T23:59:41,173 adding 'gqlib/db/annotation_db.py' 2023-09-29T23:59:41,174 adding 'gqlib/db/database.py' 2023-09-29T23:59:41,176 adding 'gqlib/db/db_import.py' 2023-09-29T23:59:41,178 adding 'gqlib/db/gff_dbm.py' 2023-09-29T23:59:41,180 adding 'gqlib/db/models/__init__.py' 2023-09-29T23:59:41,182 adding 'gqlib/db/models/db.py' 2023-09-29T23:59:41,184 adding 'gqlib/db/models/meta.py' 2023-09-29T23:59:41,186 adding 'gqlib/profilers/__init__.py' 2023-09-29T23:59:41,188 adding 'gqlib/profilers/feature_quantifier.py' 2023-09-29T23:59:41,190 adding 'gqlib/profilers/gene_quantifier.py' 2023-09-29T23:59:41,192 adding 'gqlib/profilers/region_quantifier.py' 2023-09-29T23:59:41,193 adding 'gqlib/runners/__init__.py' 2023-09-29T23:59:41,195 adding 'gqlib/runners/alignment_runner.py' 2023-09-29T23:59:41,197 adding 'gqlib/ui/__init__.py' 2023-09-29T23:59:41,199 adding 'gqlib/ui/validation.py' 2023-09-29T23:59:41,201 adding 'gqlib_old/__init__.py' 2023-09-29T23:59:41,203 adding 'gqlib_old/__main__.py' 2023-09-29T23:59:41,206 adding 'gqlib_old/handle_args.py' 2023-09-29T23:59:41,208 adding 'gqlib_old/alignment/__init__.py' 2023-09-29T23:59:41,209 adding 'gqlib_old/alignment/aln_group.py' 2023-09-29T23:59:41,212 adding 'gqlib_old/alignment/bamreader.py' 2023-09-29T23:59:41,214 adding 'gqlib_old/alignment/pysam_alignment_processor.py' 2023-09-29T23:59:41,216 adding 'gqlib_old/annotation/__init__.py' 2023-09-29T23:59:41,218 adding 'gqlib_old/annotation/count_annotator.py' 2023-09-29T23:59:41,220 adding 'gqlib_old/annotation/count_writer.py' 2023-09-29T23:59:41,222 adding 'gqlib_old/bin/__init__.py' 2023-09-29T23:59:41,225 adding 'gqlib_old/bin/build_bed_database.py' 2023-09-29T23:59:41,227 adding 'gqlib_old/bin/build_custom_database.py' 2023-09-29T23:59:41,229 adding 'gqlib_old/bin/build_domain_database.py' 2023-09-29T23:59:41,231 adding 'gqlib_old/bin/build_gene_database.py' 2023-09-29T23:59:41,233 adding 'gqlib_old/bin/build_pg3_database.py' 2023-09-29T23:59:41,235 adding 'gqlib_old/bin/collate_counts.py' 2023-09-29T23:59:41,237 adding 'gqlib_old/bin/collate_studies.py' 2023-09-29T23:59:41,239 adding 'gqlib_old/bin/db_collate.py' 2023-09-29T23:59:41,241 adding 'gqlib_old/bin/db_collate2.py' 2023-09-29T23:59:41,243 adding 'gqlib_old/bin/split_table.py' 2023-09-29T23:59:41,245 adding 'gqlib_old/counters/__init__.py' 2023-09-29T23:59:41,246 adding 'gqlib_old/counters/alignment_counter.py' 2023-09-29T23:59:41,248 adding 'gqlib_old/counters/count_manager.py' 2023-09-29T23:59:41,250 adding 'gqlib_old/counters/region_counter.py' 2023-09-29T23:59:41,252 adding 'gqlib_old/counters/seq_counter.py' 2023-09-29T23:59:41,254 adding 'gqlib_old/db/__init__.py' 2023-09-29T23:59:41,256 adding 'gqlib_old/db/annotation_db.py' 2023-09-29T23:59:41,258 adding 'gqlib_old/db/database.py' 2023-09-29T23:59:41,260 adding 'gqlib_old/db/db_import.py' 2023-09-29T23:59:41,262 adding 'gqlib_old/db/gff_dbm.py' 2023-09-29T23:59:41,264 adding 'gqlib_old/db/models/__init__.py' 2023-09-29T23:59:41,265 adding 'gqlib_old/db/models/db.py' 2023-09-29T23:59:41,267 adding 'gqlib_old/db/models/meta.py' 2023-09-29T23:59:41,269 adding 'gqlib_old/profilers/__init__.py' 2023-09-29T23:59:41,271 adding 'gqlib_old/profilers/feature_quantifier.py' 2023-09-29T23:59:41,273 adding 'gqlib_old/profilers/gene_quantifier.py' 2023-09-29T23:59:41,275 adding 'gqlib_old/profilers/region_quantifier.py' 2023-09-29T23:59:41,277 adding 'gqlib_oldx/__init__.py' 2023-09-29T23:59:41,279 adding 'gqlib_oldx/__main__.py' 2023-09-29T23:59:41,281 adding 'gqlib_oldx/handle_args.py' 2023-09-29T23:59:41,283 adding 'gqlib_oldx/alignment/__init__.py' 2023-09-29T23:59:41,285 adding 'gqlib_oldx/alignment/aln_group.py' 2023-09-29T23:59:41,287 adding 'gqlib_oldx/alignment/bamreader.py' 2023-09-29T23:59:41,289 adding 'gqlib_oldx/alignment/pysam_alignment_processor.py' 2023-09-29T23:59:41,291 adding 'gqlib_oldx/annotation/__init__.py' 2023-09-29T23:59:41,294 adding 'gqlib_oldx/annotation/count_annotator.py' 2023-09-29T23:59:41,296 adding 'gqlib_oldx/annotation/count_writer.py' 2023-09-29T23:59:41,298 adding 'gqlib_oldx/bin/__init__.py' 2023-09-29T23:59:41,300 adding 'gqlib_oldx/bin/build_bed_database.py' 2023-09-29T23:59:41,302 adding 'gqlib_oldx/bin/build_custom_database.py' 2023-09-29T23:59:41,304 adding 'gqlib_oldx/bin/build_domain_database.py' 2023-09-29T23:59:41,305 adding 'gqlib_oldx/bin/build_gene_database.py' 2023-09-29T23:59:41,307 adding 'gqlib_oldx/bin/collate_counts.py' 2023-09-29T23:59:41,308 adding 'gqlib_oldx/bin/collate_studies.py' 2023-09-29T23:59:41,310 adding 'gqlib_oldx/bin/split_table.py' 2023-09-29T23:59:41,311 adding 'gqlib_oldx/counters/__init__.py' 2023-09-29T23:59:41,312 adding 'gqlib_oldx/counters/alignment_counter.py' 2023-09-29T23:59:41,314 adding 'gqlib_oldx/counters/count_manager.py' 2023-09-29T23:59:41,315 adding 'gqlib_oldx/counters/region_counter.py' 2023-09-29T23:59:41,316 adding 'gqlib_oldx/counters/seq_counter.py' 2023-09-29T23:59:41,318 adding 'gqlib_oldx/db/__init__.py' 2023-09-29T23:59:41,320 adding 'gqlib_oldx/db/annotation_db.py' 2023-09-29T23:59:41,321 adding 'gqlib_oldx/db/database.py' 2023-09-29T23:59:41,322 adding 'gqlib_oldx/db/db_import.py' 2023-09-29T23:59:41,324 adding 'gqlib_oldx/db/gff_dbm.py' 2023-09-29T23:59:41,325 adding 'gqlib_oldx/db/models/__init__.py' 2023-09-29T23:59:41,327 adding 'gqlib_oldx/db/models/db.py' 2023-09-29T23:59:41,328 adding 'gqlib_oldx/db/models/meta.py' 2023-09-29T23:59:41,329 adding 'gqlib_oldx/profilers/__init__.py' 2023-09-29T23:59:41,331 adding 'gqlib_oldx/profilers/feature_quantifier.py' 2023-09-29T23:59:41,333 adding 'gqlib_oldx/profilers/gene_quantifier.py' 2023-09-29T23:59:41,334 adding 'gqlib_oldx/profilers/region_quantifier.py' 2023-09-29T23:59:41,335 adding 'gqlib-2.14.2.dist-info/LICENSE' 2023-09-29T23:59:41,336 adding 'gqlib-2.14.2.dist-info/METADATA' 2023-09-29T23:59:41,337 adding 'gqlib-2.14.2.dist-info/WHEEL' 2023-09-29T23:59:41,338 adding 'gqlib-2.14.2.dist-info/top_level.txt' 2023-09-29T23:59:41,340 adding 'gqlib-2.14.2.dist-info/RECORD' 2023-09-29T23:59:41,344 removing build/bdist.linux-armv7l/wheel 2023-09-29T23:59:41,488 Building wheel for gqlib (setup.py): finished with status 'done' 2023-09-29T23:59:41,492 Created wheel for gqlib: filename=gqlib-2.14.2-py3-none-any.whl size=153759 sha256=762b0d76989c7809374852fff5b2eacd3c4116cbc3217ee4b287dd070d7f075f 2023-09-29T23:59:41,493 Stored in directory: /tmp/pip-ephem-wheel-cache-3xzj2fuq/wheels/6e/9d/5b/b8412c4da120b3676ec1ac68cc7f749e4f16e4f45e636864c3 2023-09-29T23:59:41,506 Successfully built gqlib 2023-09-29T23:59:41,513 Removed build tracker: '/tmp/pip-build-tracker-mpgy3t78'