2023-09-30T00:29:17,232 Created temporary directory: /tmp/pip-build-tracker-400lxj_t
2023-09-30T00:29:17,234 Initialized build tracking at /tmp/pip-build-tracker-400lxj_t
2023-09-30T00:29:17,234 Created build tracker: /tmp/pip-build-tracker-400lxj_t
2023-09-30T00:29:17,235 Entered build tracker: /tmp/pip-build-tracker-400lxj_t
2023-09-30T00:29:17,235 Created temporary directory: /tmp/pip-wheel-yjp80zme
2023-09-30T00:29:17,239 Created temporary directory: /tmp/pip-ephem-wheel-cache-hmyt982g
2023-09-30T00:29:17,260 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-30T00:29:17,264 2 location(s) to search for versions of capcruncher:
2023-09-30T00:29:17,264 * https://pypi.org/simple/capcruncher/
2023-09-30T00:29:17,264 * https://www.piwheels.org/simple/capcruncher/
2023-09-30T00:29:17,265 Fetching project page and analyzing links: https://pypi.org/simple/capcruncher/
2023-09-30T00:29:17,266 Getting page https://pypi.org/simple/capcruncher/
2023-09-30T00:29:17,267 Found index url https://pypi.org/simple/
2023-09-30T00:29:17,539 Fetched page https://pypi.org/simple/capcruncher/ as application/vnd.pypi.simple.v1+json
2023-09-30T00:29:17,544   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/34/0a/9e75866768f2f383fb94a19406fc1351c2752e365607839d6e2bb1d8d84b/capcruncher-0.1.0a1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,545   Found link https://files.pythonhosted.org/packages/3c/f1/f89b867eec66701b2f41487ec19a3092f869cba76c6d15750220af30ab7b/capcruncher-0.1.0a1.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.1.0a1
2023-09-30T00:29:17,546   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/1d/1b/b3083fd403c5ea09c7ac18edb1a69b795ab753e1dce96d3837c6777c090a/capcruncher-0.1.0a2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,547   Found link https://files.pythonhosted.org/packages/78/43/1dbd9816f26f28c8ea8e41109f7b55f3c29216ae9ee9faf3132455ee5900/capcruncher-0.1.0a2.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.1.0a2
2023-09-30T00:29:17,548   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/af/21/1bd19a95d650d782bd61f0617e2ade19b8ea9dfc2583d5188cf31fc9e2ac/capcruncher-0.1.1a0-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-09-30T00:29:17,548   Found link https://files.pythonhosted.org/packages/4b/58/8c4c26cb67c97bc632d4fd7df6b754a3d7d52d9224a12b5ef30f1551e18a/capcruncher-0.1.1a0.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.1.1a0
2023-09-30T00:29:17,549   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/09/3a/0d4e2559f5fcd1ea08ba4a59a2174bfa9b4e362fb6fbbeff57652bc8b43b/capcruncher-0.1.1a1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-09-30T00:29:17,550   Found link https://files.pythonhosted.org/packages/fc/38/d9f3fbb589780a7116c60af23e14e0ffec82fa966bd6fac06494df1ff972/capcruncher-0.1.1a1.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.1.1a1
2023-09-30T00:29:17,551   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/d8/b8/f378ab302aba8e011a3548bc8e12ca018dd51bae5e175f2aeac9b7023dbe/capcruncher-0.2.0-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-09-30T00:29:17,551   Found link https://files.pythonhosted.org/packages/ab/85/07383d62359c33bab143b6f85173a09852963625a5c6e23bbfd5c54d81d4/capcruncher-0.2.0.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.2.0
2023-09-30T00:29:17,552   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/20/fb/21512e9e9259664564498669e39be1c06854d7b9a4b2c088d640dbaed48b/capcruncher-0.2.2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-09-30T00:29:17,553   Found link https://files.pythonhosted.org/packages/d6/8a/d499689bfadfc8c5ad88d9403619ffd62fe9169a359c304a3ef25d368b1d/capcruncher-0.2.2.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.2.2
2023-09-30T00:29:17,553   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/37/32/8d0b33d160aeec619f8cc86611ac7771733f9a300176f3b7fbc5f94dc51a/capcruncher-0.2.3-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,555   Found link https://files.pythonhosted.org/packages/e7/da/78b7ae1ccdca4a9c2a0abdd16e308facc1909da2e159ce2d565c05fad639/capcruncher-0.2.3.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.2.3
2023-09-30T00:29:17,555   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/26/e5/2b7ada507bb60d04dfafa0655d63edd3b82cdfb5476b8672acf0cb5477b9/capcruncher-0.3.1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,556   Found link https://files.pythonhosted.org/packages/43/bd/2aabc1f9b8e2fae522852b4f3c8f27f42aadcf50016eb7bfcdfe83d499bb/capcruncher-0.3.1.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.1
2023-09-30T00:29:17,557   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/23/34/26f733de022f420176a15aaccb50dc49d6eac08dcf68d147f08d3abb257b/capcruncher-0.3.2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,557   Found link https://files.pythonhosted.org/packages/b4/c4/a3c7065d7c993db2680c1303d40862031cc6e8535aca5b023ded383d4520/capcruncher-0.3.2.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.2
2023-09-30T00:29:17,558   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/80/d5/ae6f38bc4ec0724841406c0125296bad843a1ca2fe9e2dfce8bb73796ae5/capcruncher-0.3.3-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,559   Found link https://files.pythonhosted.org/packages/21/8f/8063b68decdfed76375774899994ce09bf6f2362453110d3a7e3091d0f47/capcruncher-0.3.3.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.3
2023-09-30T00:29:17,559   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/61/55/adac692b940cca0f453b760ec8c3be9b325e22afb8e8693717fcebd202c0/capcruncher-0.3.4-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,560   Found link https://files.pythonhosted.org/packages/b1/78/c98a2a4a6e62b5bd169af128129633b9e06bce32b0284b79c68808a8f0e5/capcruncher-0.3.4.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.4
2023-09-30T00:29:17,561   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/a7/b0/ed93710d654d62b661c227e5ab7cd4318633571b06cf746789710ca33465/capcruncher-0.3.5-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,562   Found link https://files.pythonhosted.org/packages/37/ea/966e9f14e18737107ed291ea6d3646f5a05e13a9566c2e70e0a7cd9ed172/capcruncher-0.3.5.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.5
2023-09-30T00:29:17,563 Fetching project page and analyzing links: https://www.piwheels.org/simple/capcruncher/
2023-09-30T00:29:17,564 Getting page https://www.piwheels.org/simple/capcruncher/
2023-09-30T00:29:17,565 Found index url https://www.piwheels.org/simple/
2023-09-30T00:29:17,721 Fetched page https://www.piwheels.org/simple/capcruncher/ as text/html
2023-09-30T00:29:17,725   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.4-py3-none-any.whl#sha256=1f430b5ce16f4b15f8b8c7eae415267929912ca0a78616fde3f593f9d458918e (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,726   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.3-py3-none-any.whl#sha256=a622eec10ed86905ffdc0d9696093c93ede9ae0280eb0979727ed05b78c6aeed (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,727   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.2-py3-none-any.whl#sha256=cb9bbb6e602e5e11dcbac280be5520518f0110c58eb9bc7937644b956c455a02 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,728   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.1-py3-none-any.whl#sha256=010cc17949484bec95ba588bf89f30d450d6476b8e7c612e14f32270db999b52 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-09-30T00:29:17,728   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.3-py3-none-any.whl#sha256=3640a41566ec698430601c7ee8ff373d698ad995981fcb1564072cbdaadeaa70 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,729   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.2-py3-none-any.whl#sha256=696271de6a0cfb479ebe5c059b46015c0b54a4883b28fac6d3f60d3f10360694 (from https://www.piwheels.org/simple/capcruncher/)
2023-09-30T00:29:17,729   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.0-py3-none-any.whl#sha256=a376e09af30f629484777d94d245a0a18cdee37e332344294623f74a218de161 (from https://www.piwheels.org/simple/capcruncher/)
2023-09-30T00:29:17,729   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.1a1-py3-none-any.whl#sha256=45ad47d1025882de7d3ae2436f95d9c690fb55f4ad3320a464754782dd2a9ce8 (from https://www.piwheels.org/simple/capcruncher/)
2023-09-30T00:29:17,730   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.1a0-py3-none-any.whl#sha256=33582eed6498ac35fff342bc97adfeec48d012dca74e99a13b6c8ed596465d0d (from https://www.piwheels.org/simple/capcruncher/)
2023-09-30T00:29:17,731   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.0a2-py3-none-any.whl#sha256=a9cad04a0fa53e9864f02ac8641b704ba78bd0da1a8d83c5e84199e7ae183222 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,731   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.0a1-py3-none-any.whl#sha256=8d0852e344db844525d67d074e33a0880f102073b0bdc5d77c2c3bd498ffee5b (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-09-30T00:29:17,732 Skipping link: not a file: https://www.piwheels.org/simple/capcruncher/
2023-09-30T00:29:17,732 Skipping link: not a file: https://pypi.org/simple/capcruncher/
2023-09-30T00:29:17,753 Given no hashes to check 1 links for project 'capcruncher': discarding no candidates
2023-09-30T00:29:17,772 Collecting capcruncher==0.3.5
2023-09-30T00:29:17,775   Created temporary directory: /tmp/pip-unpack-7cpwv7ho
2023-09-30T00:29:17,999   Downloading capcruncher-0.3.5.tar.gz (84.8 MB)
2023-09-30T00:29:36,158   Added capcruncher==0.3.5 from https://files.pythonhosted.org/packages/37/ea/966e9f14e18737107ed291ea6d3646f5a05e13a9566c2e70e0a7cd9ed172/capcruncher-0.3.5.tar.gz to build tracker '/tmp/pip-build-tracker-400lxj_t'
2023-09-30T00:29:36,166   Created temporary directory: /tmp/pip-build-env-7ygr1cof
2023-09-30T00:29:36,170   Installing build dependencies: started
2023-09-30T00:29:36,172   Running command pip subprocess to install build dependencies
2023-09-30T00:29:37,386   Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-09-30T00:29:37,922   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-30T00:29:39,459   Collecting setuptools>=61.0
2023-09-30T00:29:39,526     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-09-30T00:29:39,760   Collecting wheel
2023-09-30T00:29:39,776     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-30T00:29:40,064   Collecting setuptools_scm[toml]>=6.2
2023-09-30T00:29:40,066     Obtaining dependency information for setuptools_scm[toml]>=6.2 from https://files.pythonhosted.org/packages/ca/04/4ea91c627355ae6d976bf7f1fc2815372a96b1b87bf290c8d726d10a08a1/setuptools_scm-8.0.3-py3-none-any.whl.metadata
2023-09-30T00:29:40,072     Using cached setuptools_scm-8.0.3-py3-none-any.whl.metadata (6.1 kB)
2023-09-30T00:29:40,421   Collecting packaging>=20 (from setuptools_scm[toml]>=6.2)
2023-09-30T00:29:40,437     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-09-30T00:29:40,494   Using cached setuptools_scm-8.0.3-py3-none-any.whl (41 kB)
2023-09-30T00:29:43,136   Installing collected packages: wheel, setuptools, packaging, setuptools_scm
2023-09-30T00:29:43,365     Creating /tmp/pip-build-env-7ygr1cof/overlay/local/bin
2023-09-30T00:29:43,367     changing mode of /tmp/pip-build-env-7ygr1cof/overlay/local/bin/wheel to 755
2023-09-30T00:29:45,909   Successfully installed packaging-23.1 setuptools-68.2.2 setuptools_scm-8.0.3 wheel-0.41.2
2023-09-30T00:29:46,438   Installing build dependencies: finished with status 'done'
2023-09-30T00:29:46,441   Getting requirements to build wheel: started
2023-09-30T00:29:46,442   Running command Getting requirements to build wheel
2023-09-30T00:29:47,342   running egg_info
2023-09-30T00:29:47,347   writing capcruncher.egg-info/PKG-INFO
2023-09-30T00:29:47,354   writing dependency_links to capcruncher.egg-info/dependency_links.txt
2023-09-30T00:29:47,356   writing entry points to capcruncher.egg-info/entry_points.txt
2023-09-30T00:29:47,359   writing requirements to capcruncher.egg-info/requires.txt
2023-09-30T00:29:47,360   writing top-level names to capcruncher.egg-info/top_level.txt
2023-09-30T00:29:47,408   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-30T00:29:47,412   reading manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:47,421   reading manifest template 'MANIFEST.in'
2023-09-30T00:29:47,454   adding license file 'LICENSE'
2023-09-30T00:29:47,463   writing manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:47,590   Getting requirements to build wheel: finished with status 'done'
2023-09-30T00:29:47,604   Created temporary directory: /tmp/pip-modern-metadata-5y_8akj9
2023-09-30T00:29:47,606   Preparing metadata (pyproject.toml): started
2023-09-30T00:29:47,608   Running command Preparing metadata (pyproject.toml)
2023-09-30T00:29:48,450   running dist_info
2023-09-30T00:29:48,455   creating /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info
2023-09-30T00:29:48,460   writing /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/PKG-INFO
2023-09-30T00:29:48,467   writing dependency_links to /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/dependency_links.txt
2023-09-30T00:29:48,468   writing entry points to /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/entry_points.txt
2023-09-30T00:29:48,471   writing requirements to /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/requires.txt
2023-09-30T00:29:48,472   writing top-level names to /tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/top_level.txt
2023-09-30T00:29:48,474   writing manifest file '/tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:48,514   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-30T00:29:48,517   reading manifest file '/tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:48,519   reading manifest template 'MANIFEST.in'
2023-09-30T00:29:48,548   adding license file 'LICENSE'
2023-09-30T00:29:48,552   writing manifest file '/tmp/pip-modern-metadata-5y_8akj9/capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:48,553   creating '/tmp/pip-modern-metadata-5y_8akj9/capcruncher-0.3.5.dist-info'
2023-09-30T00:29:48,723   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-30T00:29:48,734   Source in /tmp/pip-wheel-yjp80zme/capcruncher_376a5966ba32490c91c992a2b7d89c8f has version 0.3.5, which satisfies requirement capcruncher==0.3.5 from https://files.pythonhosted.org/packages/37/ea/966e9f14e18737107ed291ea6d3646f5a05e13a9566c2e70e0a7cd9ed172/capcruncher-0.3.5.tar.gz
2023-09-30T00:29:48,735   Removed capcruncher==0.3.5 from https://files.pythonhosted.org/packages/37/ea/966e9f14e18737107ed291ea6d3646f5a05e13a9566c2e70e0a7cd9ed172/capcruncher-0.3.5.tar.gz from build tracker '/tmp/pip-build-tracker-400lxj_t'
2023-09-30T00:29:48,754 Created temporary directory: /tmp/pip-unpack-8j1au49c
2023-09-30T00:29:48,755 Created temporary directory: /tmp/pip-unpack-r6hf5dng
2023-09-30T00:29:48,806 Building wheels for collected packages: capcruncher
2023-09-30T00:29:48,810   Created temporary directory: /tmp/pip-wheel-0ju889a2
2023-09-30T00:29:48,810   Destination directory: /tmp/pip-wheel-0ju889a2
2023-09-30T00:29:48,812   Building wheel for capcruncher (pyproject.toml): started
2023-09-30T00:29:48,813   Running command Building wheel for capcruncher (pyproject.toml)
2023-09-30T00:29:49,622   running bdist_wheel
2023-09-30T00:29:49,644   running build
2023-09-30T00:29:49,644   running build_py
2023-09-30T00:29:49,649   creating build
2023-09-30T00:29:49,650   creating build/lib
2023-09-30T00:29:49,651   creating build/lib/capcruncher
2023-09-30T00:29:49,652   copying capcruncher/__init__.py -> build/lib/capcruncher
2023-09-30T00:29:49,654   copying capcruncher/_version.py -> build/lib/capcruncher
2023-09-30T00:29:49,655   copying capcruncher/utils.py -> build/lib/capcruncher
2023-09-30T00:29:49,658   creating build/lib/capcruncher/pipeline
2023-09-30T00:29:49,658   copying capcruncher/pipeline/utils.py -> build/lib/capcruncher/pipeline
2023-09-30T00:29:49,662   creating build/lib/capcruncher/cli
2023-09-30T00:29:49,663   copying capcruncher/cli/cli_interactions.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,665   copying capcruncher/cli/cli_fastq.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,667   copying capcruncher/cli/interactions_count.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,669   copying capcruncher/cli/fastq_split.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,671   copying capcruncher/cli/cli_genome.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,673   copying capcruncher/cli/__init__.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,674   copying capcruncher/cli/alignments_annotate.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,676   copying capcruncher/cli/interactions_store.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,678   copying capcruncher/cli/genome_digest.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,680   copying capcruncher/cli/interactions_pileup.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,682   copying capcruncher/cli/cli_utilities.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,684   copying capcruncher/cli/cli_alignments.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,686   copying capcruncher/cli/interactions_compare.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,689   copying capcruncher/cli/interactions_differential.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,690   copying capcruncher/cli/interactions_deduplicate.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,692   copying capcruncher/cli/alignments_filter.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,694   copying capcruncher/cli/fastq_digest.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,696   copying capcruncher/cli/cli_pipeline.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,698   copying capcruncher/cli/cli_plot.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,699   copying capcruncher/cli/fastq_deduplicate.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,701   copying capcruncher/cli/plot.py -> build/lib/capcruncher/cli
2023-09-30T00:29:49,704   creating build/lib/capcruncher/api
2023-09-30T00:29:49,704   copying capcruncher/api/io.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,707   copying capcruncher/api/plotting.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,709   copying capcruncher/api/storage.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,711   copying capcruncher/api/__init__.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,713   copying capcruncher/api/statistics.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,715   copying capcruncher/api/annotate.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,716   copying capcruncher/api/pileup.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,719   copying capcruncher/api/filter.py -> build/lib/capcruncher/api
2023-09-30T00:29:49,723   creating build/lib/capcruncher/pipeline/workflow
2023-09-30T00:29:49,724   creating build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,724   copying capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,726   copying capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,728   copying capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,729   copying capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,731   copying capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,733   copying capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,734   copying capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,736   copying capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,738   copying capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,739   copying capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,741   copying capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,743   copying capcruncher/pipeline/workflow/scripts/plot.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,744   copying capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,747   creating build/lib/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,747   copying capcruncher/pipeline/workflow/report/make_report.py -> build/lib/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,752   running egg_info
2023-09-30T00:29:49,757   writing capcruncher.egg-info/PKG-INFO
2023-09-30T00:29:49,763   writing dependency_links to capcruncher.egg-info/dependency_links.txt
2023-09-30T00:29:49,764   writing entry points to capcruncher.egg-info/entry_points.txt
2023-09-30T00:29:49,767   writing requirements to capcruncher.egg-info/requires.txt
2023-09-30T00:29:49,768   writing top-level names to capcruncher.egg-info/top_level.txt
2023-09-30T00:29:49,798   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-09-30T00:29:49,801   reading manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:49,807   reading manifest template 'MANIFEST.in'
2023-09-30T00:29:49,843   adding license file 'LICENSE'
2023-09-30T00:29:49,851   writing manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-09-30T00:29:49,859   creating build/lib/capcruncher/data
2023-09-30T00:29:49,860   copying capcruncher/data/logo.txt -> build/lib/capcruncher/data
2023-09-30T00:29:49,862   creating build/lib/capcruncher/pipeline/config
2023-09-30T00:29:49,862   copying capcruncher/pipeline/config/cookiecutter.json -> build/lib/capcruncher/pipeline/config
2023-09-30T00:29:49,864   creating build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-09-30T00:29:49,865   copying capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml -> build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-09-30T00:29:49,867   copying capcruncher/pipeline/workflow/Snakefile -> build/lib/capcruncher/pipeline/workflow
2023-09-30T00:29:49,870   copying capcruncher/pipeline/workflow/report/capcruncher_report.qmd -> build/lib/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,872   copying capcruncher/pipeline/workflow/report/report_text.yml -> build/lib/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,874   creating build/lib/capcruncher/pipeline/workflow/data
2023-09-30T00:29:49,875   copying capcruncher/pipeline/workflow/data/annotation_defaults.json -> build/lib/capcruncher/pipeline/workflow/data
2023-09-30T00:29:49,877   creating build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,878   copying capcruncher/pipeline/workflow/rules/align.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,880   copying capcruncher/pipeline/workflow/rules/annotate.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,882   copying capcruncher/pipeline/workflow/rules/compare.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,884   copying capcruncher/pipeline/workflow/rules/digest.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,886   copying capcruncher/pipeline/workflow/rules/fastq.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,888   copying capcruncher/pipeline/workflow/rules/filter.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,890   copying capcruncher/pipeline/workflow/rules/pileup.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,892   copying capcruncher/pipeline/workflow/rules/qc.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,894   copying capcruncher/pipeline/workflow/rules/statistics.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,896   copying capcruncher/pipeline/workflow/rules/visualise.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:49,898   creating build/lib/capcruncher/pipeline/workflow/envs
2023-09-30T00:29:49,899   copying capcruncher/pipeline/workflow/envs/environment.yml -> build/lib/capcruncher/pipeline/workflow/envs
2023-09-30T00:29:49,901   creating build/lib/capcruncher/pipeline/workflow/envs/profiles
2023-09-30T00:29:49,902   creating build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-09-30T00:29:49,903   copying capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml -> build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-09-30T00:29:49,905   creating build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-09-30T00:29:49,906   copying capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml -> build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-09-30T00:29:49,922   installing to build/bdist.linux-armv7l/wheel
2023-09-30T00:29:49,923   running install
2023-09-30T00:29:49,947   running install_lib
2023-09-30T00:29:49,952   creating build/bdist.linux-armv7l
2023-09-30T00:29:49,953   creating build/bdist.linux-armv7l/wheel
2023-09-30T00:29:49,954   creating build/bdist.linux-armv7l/wheel/capcruncher
2023-09-30T00:29:49,955   copying build/lib/capcruncher/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-09-30T00:29:49,957   copying build/lib/capcruncher/_version.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-09-30T00:29:49,959   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline
2023-09-30T00:29:49,960   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config
2023-09-30T00:29:49,962   copying build/lib/capcruncher/pipeline/config/cookiecutter.json -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config
2023-09-30T00:29:49,964   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-09-30T00:29:49,965   copying build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-09-30T00:29:49,967   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow
2023-09-30T00:29:49,968   copying build/lib/capcruncher/pipeline/workflow/Snakefile -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow
2023-09-30T00:29:49,971   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,971   copying build/lib/capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,973   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,975   copying build/lib/capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,977   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,979   copying build/lib/capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,981   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,982   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,984   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,986   copying build/lib/capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,987   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,989   copying build/lib/capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,991   copying build/lib/capcruncher/pipeline/workflow/scripts/plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,993   copying build/lib/capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-09-30T00:29:49,995   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,996   copying build/lib/capcruncher/pipeline/workflow/report/report_text.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-09-30T00:29:49,998   copying build/lib/capcruncher/pipeline/workflow/report/capcruncher_report.qmd -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-09-30T00:29:50,001   copying build/lib/capcruncher/pipeline/workflow/report/make_report.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-09-30T00:29:50,004   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/data
2023-09-30T00:29:50,005   copying build/lib/capcruncher/pipeline/workflow/data/annotation_defaults.json -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/data
2023-09-30T00:29:50,007   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,012   copying build/lib/capcruncher/pipeline/workflow/rules/digest.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,013   copying build/lib/capcruncher/pipeline/workflow/rules/compare.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,016   copying build/lib/capcruncher/pipeline/workflow/rules/qc.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,017   copying build/lib/capcruncher/pipeline/workflow/rules/align.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,019   copying build/lib/capcruncher/pipeline/workflow/rules/visualise.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,021   copying build/lib/capcruncher/pipeline/workflow/rules/filter.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,023   copying build/lib/capcruncher/pipeline/workflow/rules/pileup.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,025   copying build/lib/capcruncher/pipeline/workflow/rules/fastq.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,027   copying build/lib/capcruncher/pipeline/workflow/rules/statistics.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,029   copying build/lib/capcruncher/pipeline/workflow/rules/annotate.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-09-30T00:29:50,031   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs
2023-09-30T00:29:50,032   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles
2023-09-30T00:29:50,034   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-09-30T00:29:50,035   copying build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-09-30T00:29:50,037   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-09-30T00:29:50,038   copying build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-09-30T00:29:50,040   copying build/lib/capcruncher/pipeline/workflow/envs/environment.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs
2023-09-30T00:29:50,042   copying build/lib/capcruncher/pipeline/utils.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline
2023-09-30T00:29:50,044   creating build/bdist.linux-armv7l/wheel/capcruncher/data
2023-09-30T00:29:50,045   copying build/lib/capcruncher/data/logo.txt -> build/bdist.linux-armv7l/wheel/capcruncher/data
2023-09-30T00:29:50,048   creating build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,048   copying build/lib/capcruncher/cli/cli_interactions.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,051   copying build/lib/capcruncher/cli/cli_fastq.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,053   copying build/lib/capcruncher/cli/interactions_count.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,055   copying build/lib/capcruncher/cli/fastq_split.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,057   copying build/lib/capcruncher/cli/cli_genome.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,058   copying build/lib/capcruncher/cli/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,060   copying build/lib/capcruncher/cli/alignments_annotate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,062   copying build/lib/capcruncher/cli/interactions_store.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,064   copying build/lib/capcruncher/cli/genome_digest.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,066   copying build/lib/capcruncher/cli/interactions_pileup.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,067   copying build/lib/capcruncher/cli/cli_utilities.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,070   copying build/lib/capcruncher/cli/cli_alignments.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,072   copying build/lib/capcruncher/cli/interactions_compare.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,074   copying build/lib/capcruncher/cli/interactions_differential.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,076   copying build/lib/capcruncher/cli/interactions_deduplicate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,078   copying build/lib/capcruncher/cli/alignments_filter.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,079   copying build/lib/capcruncher/cli/fastq_digest.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,081   copying build/lib/capcruncher/cli/cli_pipeline.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,083   copying build/lib/capcruncher/cli/cli_plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,084   copying build/lib/capcruncher/cli/fastq_deduplicate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,086   copying build/lib/capcruncher/cli/plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-09-30T00:29:50,087   copying build/lib/capcruncher/utils.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-09-30T00:29:50,090   creating build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,091   copying build/lib/capcruncher/api/io.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,093   copying build/lib/capcruncher/api/plotting.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,096   copying build/lib/capcruncher/api/storage.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,098   copying build/lib/capcruncher/api/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,100   copying build/lib/capcruncher/api/statistics.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,101   copying build/lib/capcruncher/api/annotate.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,103   copying build/lib/capcruncher/api/pileup.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,106   copying build/lib/capcruncher/api/filter.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-09-30T00:29:50,108   running install_egg_info
2023-09-30T00:29:50,113   Copying capcruncher.egg-info to build/bdist.linux-armv7l/wheel/capcruncher-0.3.5-py3.11.egg-info
2023-09-30T00:29:50,125   running install_scripts
2023-09-30T00:29:50,151   creating build/bdist.linux-armv7l/wheel/capcruncher-0.3.5.dist-info/WHEEL
2023-09-30T00:29:50,153   creating '/tmp/pip-wheel-0ju889a2/.tmp-72vm0ol1/capcruncher-0.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-30T00:29:50,155   adding 'capcruncher/__init__.py'
2023-09-30T00:29:50,157   adding 'capcruncher/_version.py'
2023-09-30T00:29:50,159   adding 'capcruncher/utils.py'
2023-09-30T00:29:50,161   adding 'capcruncher/api/__init__.py'
2023-09-30T00:29:50,163   adding 'capcruncher/api/annotate.py'
2023-09-30T00:29:50,166   adding 'capcruncher/api/filter.py'
2023-09-30T00:29:50,169   adding 'capcruncher/api/io.py'
2023-09-30T00:29:50,171   adding 'capcruncher/api/pileup.py'
2023-09-30T00:29:50,175   adding 'capcruncher/api/plotting.py'
2023-09-30T00:29:50,176   adding 'capcruncher/api/statistics.py'
2023-09-30T00:29:50,179   adding 'capcruncher/api/storage.py'
2023-09-30T00:29:50,181   adding 'capcruncher/cli/__init__.py'
2023-09-30T00:29:50,183   adding 'capcruncher/cli/alignments_annotate.py'
2023-09-30T00:29:50,185   adding 'capcruncher/cli/alignments_filter.py'
2023-09-30T00:29:50,186   adding 'capcruncher/cli/cli_alignments.py'
2023-09-30T00:29:50,188   adding 'capcruncher/cli/cli_fastq.py'
2023-09-30T00:29:50,189   adding 'capcruncher/cli/cli_genome.py'
2023-09-30T00:29:50,191   adding 'capcruncher/cli/cli_interactions.py'
2023-09-30T00:29:50,192   adding 'capcruncher/cli/cli_pipeline.py'
2023-09-30T00:29:50,194   adding 'capcruncher/cli/cli_plot.py'
2023-09-30T00:29:50,196   adding 'capcruncher/cli/cli_utilities.py'
2023-09-30T00:29:50,197   adding 'capcruncher/cli/fastq_deduplicate.py'
2023-09-30T00:29:50,198   adding 'capcruncher/cli/fastq_digest.py'
2023-09-30T00:29:50,200   adding 'capcruncher/cli/fastq_split.py'
2023-09-30T00:29:50,201   adding 'capcruncher/cli/genome_digest.py'
2023-09-30T00:29:50,203   adding 'capcruncher/cli/interactions_compare.py'
2023-09-30T00:29:50,204   adding 'capcruncher/cli/interactions_count.py'
2023-09-30T00:29:50,205   adding 'capcruncher/cli/interactions_deduplicate.py'
2023-09-30T00:29:50,207   adding 'capcruncher/cli/interactions_differential.py'
2023-09-30T00:29:50,209   adding 'capcruncher/cli/interactions_pileup.py'
2023-09-30T00:29:50,210   adding 'capcruncher/cli/interactions_store.py'
2023-09-30T00:29:50,211   adding 'capcruncher/cli/plot.py'
2023-09-30T00:29:50,213   adding 'capcruncher/data/logo.txt'
2023-09-30T00:29:50,216   adding 'capcruncher/pipeline/utils.py'
2023-09-30T00:29:50,218   adding 'capcruncher/pipeline/config/cookiecutter.json'
2023-09-30T00:29:50,220   adding 'capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml'
2023-09-30T00:29:50,222   adding 'capcruncher/pipeline/workflow/Snakefile'
2023-09-30T00:29:50,224   adding 'capcruncher/pipeline/workflow/data/annotation_defaults.json'
2023-09-30T00:29:50,225   adding 'capcruncher/pipeline/workflow/envs/environment.yml'
2023-09-30T00:29:50,227   adding 'capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml'
2023-09-30T00:29:50,229   adding 'capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml'
2023-09-30T00:29:50,232   adding 'capcruncher/pipeline/workflow/report/capcruncher_report.qmd'
2023-09-30T00:29:50,234   adding 'capcruncher/pipeline/workflow/report/make_report.py'
2023-09-30T00:29:50,236   adding 'capcruncher/pipeline/workflow/report/report_text.yml'
2023-09-30T00:29:50,238   adding 'capcruncher/pipeline/workflow/rules/align.smk'
2023-09-30T00:29:50,239   adding 'capcruncher/pipeline/workflow/rules/annotate.smk'
2023-09-30T00:29:50,240   adding 'capcruncher/pipeline/workflow/rules/compare.smk'
2023-09-30T00:29:50,242   adding 'capcruncher/pipeline/workflow/rules/digest.smk'
2023-09-30T00:29:50,244   adding 'capcruncher/pipeline/workflow/rules/fastq.smk'
2023-09-30T00:29:50,245   adding 'capcruncher/pipeline/workflow/rules/filter.smk'
2023-09-30T00:29:50,247   adding 'capcruncher/pipeline/workflow/rules/pileup.smk'
2023-09-30T00:29:50,248   adding 'capcruncher/pipeline/workflow/rules/qc.smk'
2023-09-30T00:29:50,249   adding 'capcruncher/pipeline/workflow/rules/statistics.smk'
2023-09-30T00:29:50,251   adding 'capcruncher/pipeline/workflow/rules/visualise.smk'
2023-09-30T00:29:50,253   adding 'capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py'
2023-09-30T00:29:50,254   adding 'capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py'
2023-09-30T00:29:50,255   adding 'capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py'
2023-09-30T00:29:50,256   adding 'capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py'
2023-09-30T00:29:50,257   adding 'capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py'
2023-09-30T00:29:50,258   adding 'capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py'
2023-09-30T00:29:50,259   adding 'capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py'
2023-09-30T00:29:50,260   adding 'capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py'
2023-09-30T00:29:50,262   adding 'capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py'
2023-09-30T00:29:50,263   adding 'capcruncher/pipeline/workflow/scripts/plot.py'
2023-09-30T00:29:50,264   adding 'capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py'
2023-09-30T00:29:50,265   adding 'capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py'
2023-09-30T00:29:50,267   adding 'capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py'
2023-09-30T00:29:50,273   adding 'capcruncher-0.3.5.dist-info/LICENSE'
2023-09-30T00:29:50,281   adding 'capcruncher-0.3.5.dist-info/METADATA'
2023-09-30T00:29:50,282   adding 'capcruncher-0.3.5.dist-info/WHEEL'
2023-09-30T00:29:50,283   adding 'capcruncher-0.3.5.dist-info/entry_points.txt'
2023-09-30T00:29:50,284   adding 'capcruncher-0.3.5.dist-info/top_level.txt'
2023-09-30T00:29:50,286   adding 'capcruncher-0.3.5.dist-info/RECORD'
2023-09-30T00:29:50,289   removing build/bdist.linux-armv7l/wheel
2023-09-30T00:29:50,435   Building wheel for capcruncher (pyproject.toml): finished with status 'done'
2023-09-30T00:29:50,443   Created wheel for capcruncher: filename=capcruncher-0.3.5-py3-none-any.whl size=147169 sha256=503c6a297520994543673dade8d1f543945f4696ee680a184d3f998ca2896c5b
2023-09-30T00:29:50,444   Stored in directory: /tmp/pip-ephem-wheel-cache-hmyt982g/wheels/6f/7d/c8/4e566583f69165b6e6be7b6b512fd2b446f3d6ca7292f34b1a
2023-09-30T00:29:50,479 Successfully built capcruncher
2023-09-30T00:29:50,485 Removed build tracker: '/tmp/pip-build-tracker-400lxj_t'