2023-09-30T06:24:34,381 Created temporary directory: /tmp/pip-build-tracker-4tpd25gq 2023-09-30T06:24:34,382 Initialized build tracking at /tmp/pip-build-tracker-4tpd25gq 2023-09-30T06:24:34,383 Created build tracker: /tmp/pip-build-tracker-4tpd25gq 2023-09-30T06:24:34,383 Entered build tracker: /tmp/pip-build-tracker-4tpd25gq 2023-09-30T06:24:34,384 Created temporary directory: /tmp/pip-wheel-8hlqep4j 2023-09-30T06:24:34,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-o0fh68ma 2023-09-30T06:24:34,410 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-30T06:24:34,414 2 location(s) to search for versions of gqlib: 2023-09-30T06:24:34,414 * https://pypi.org/simple/gqlib/ 2023-09-30T06:24:34,414 * https://www.piwheels.org/simple/gqlib/ 2023-09-30T06:24:34,415 Fetching project page and analyzing links: https://pypi.org/simple/gqlib/ 2023-09-30T06:24:34,415 Getting page https://pypi.org/simple/gqlib/ 2023-09-30T06:24:34,417 Found index url https://pypi.org/simple/ 2023-09-30T06:24:34,645 Fetched page https://pypi.org/simple/gqlib/ as application/vnd.pypi.simple.v1+json 2023-09-30T06:24:34,648 Found link https://files.pythonhosted.org/packages/a5/26/1fb85708574f429a67cf7ebd09819706893e408c693c867248098c8b6bb2/gqlib-2.9.9.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.9.9.3 2023-09-30T06:24:34,649 Found link https://files.pythonhosted.org/packages/0d/5a/694f5a2ea4ee7048c32cdd2cb69c7f4835e5d8a43328f762434b770b7cfb/gqlib-2.10.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.10.0 2023-09-30T06:24:34,650 Found link https://files.pythonhosted.org/packages/18/a3/f599a42c49499622e4dddc2d7b9c699a728dee1ccead4bac6055ae72d9c1/gqlib-2.12.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.1 2023-09-30T06:24:34,650 Found link https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.2 2023-09-30T06:24:34,651 Found link https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.13.0 2023-09-30T06:24:34,651 Found link https://files.pythonhosted.org/packages/50/a3/2ac18994f4f2c3ccf01226bb48d4bb264bf4a2b8a02179fab8cc4426fa9f/gqlib-2.14.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.0 2023-09-30T06:24:34,652 Found link https://files.pythonhosted.org/packages/b9/a3/7066b734916fa72d91a1f66b8813956a942a6ab87f4911741223f3535d6c/gqlib-2.14.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.1 2023-09-30T06:24:34,653 Found link https://files.pythonhosted.org/packages/c6/41/ca9aee12d1391d42cd05347f67634bc5c50dd35b91988dad8412d819cb4e/gqlib-2.14.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.2 2023-09-30T06:24:34,654 Found link https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.14.3 2023-09-30T06:24:34,655 Fetching project page and analyzing links: https://www.piwheels.org/simple/gqlib/ 2023-09-30T06:24:34,655 Getting page https://www.piwheels.org/simple/gqlib/ 2023-09-30T06:24:34,657 Found index url https://www.piwheels.org/simple/ 2023-09-30T06:24:34,816 Fetched page https://www.piwheels.org/simple/gqlib/ as text/html 2023-09-30T06:24:34,819 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.14.2-py3-none-any.whl#sha256=762b0d76989c7809374852fff5b2eacd3c4116cbc3217ee4b287dd070d7f075f (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,820 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.14.1-py3-none-any.whl#sha256=8d84e8b5e5001fbfef92aeb77d9bdb8da1129550ee7f290af93d5d6d2d82ce66 (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,821 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.14.0-py3-none-any.whl#sha256=c41b281122c2b923b2d3c89f0465f171cbe007c915c27c6710476cd1fed98574 (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,821 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.13.0-py3-none-any.whl#sha256=dfafe4e4b53c04fb1a60312eb30a983e8031ffc28ce6891f90fb0b4cdf99de0f (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,822 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.2-py3-none-any.whl#sha256=0f647a2d442d1b4b2c523c7e2193362bfe81d4aba376bf2bbece35717eebd174 (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,823 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.1-py3-none-any.whl#sha256=f1fb244343d7ea0235837d6a1bd7c60c95f6755b1a2b831691e04f851b4e551b (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,823 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.10.0-py3-none-any.whl#sha256=393b7dc20a4d91ae690b4799f687ff2522c749d97cad0f98bf305f2817b1c0ea (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,823 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.9.9.3-py3-none-any.whl#sha256=2bd1fb961af8b28506ae8b437d5b9e7a5a5f0f88b956679b48a458e056fe35e9 (from https://www.piwheels.org/simple/gqlib/) 2023-09-30T06:24:34,824 Skipping link: not a file: https://www.piwheels.org/simple/gqlib/ 2023-09-30T06:24:34,824 Skipping link: not a file: https://pypi.org/simple/gqlib/ 2023-09-30T06:24:34,845 Given no hashes to check 1 links for project 'gqlib': discarding no candidates 2023-09-30T06:24:34,864 Collecting gqlib==2.14.3 2023-09-30T06:24:34,867 Created temporary directory: /tmp/pip-unpack-bq575y5i 2023-09-30T06:24:35,098 Downloading gqlib-2.14.3.tar.gz (104 kB) 2023-09-30T06:24:35,410 Added gqlib==2.14.3 from https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz to build tracker '/tmp/pip-build-tracker-4tpd25gq' 2023-09-30T06:24:35,412 Running setup.py (path:/tmp/pip-wheel-8hlqep4j/gqlib_debb88f9865f4b3ba14c2fb30c103e0f/setup.py) egg_info for package gqlib 2023-09-30T06:24:35,413 Created temporary directory: /tmp/pip-pip-egg-info-jcoaji2m 2023-09-30T06:24:35,413 Preparing metadata (setup.py): started 2023-09-30T06:24:35,415 Running command python setup.py egg_info 2023-09-30T06:24:35,884 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:24:35,885 !! 2023-09-30T06:24:35,886 ******************************************************************************** 2023-09-30T06:24:35,886 Usage of dash-separated 'description-file' will not be supported in future 2023-09-30T06:24:35,887 versions. Please use the underscore name 'description_file' instead. 2023-09-30T06:24:35,888 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:24:35,889 calls to avoid build errors in the future. 2023-09-30T06:24:35,890 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:24:35,891 ******************************************************************************** 2023-09-30T06:24:35,892 !! 2023-09-30T06:24:35,893 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:24:36,435 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:24:36,436 !! 2023-09-30T06:24:36,437 ******************************************************************************** 2023-09-30T06:24:36,438 Usage of dash-separated 'description-file' will not be supported in future 2023-09-30T06:24:36,439 versions. Please use the underscore name 'description_file' instead. 2023-09-30T06:24:36,440 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:24:36,441 calls to avoid build errors in the future. 2023-09-30T06:24:36,442 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:24:36,442 ******************************************************************************** 2023-09-30T06:24:36,443 !! 2023-09-30T06:24:36,444 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:24:36,476 running egg_info 2023-09-30T06:24:36,477 creating /tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info 2023-09-30T06:24:36,503 writing /tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/PKG-INFO 2023-09-30T06:24:36,507 writing dependency_links to /tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/dependency_links.txt 2023-09-30T06:24:36,509 writing requirements to /tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/requires.txt 2023-09-30T06:24:36,510 writing top-level names to /tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/top_level.txt 2023-09-30T06:24:36,511 writing manifest file '/tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/SOURCES.txt' 2023-09-30T06:24:36,609 reading manifest file '/tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/SOURCES.txt' 2023-09-30T06:24:36,610 reading manifest template 'MANIFEST.in' 2023-09-30T06:24:36,611 adding license file 'LICENSE' 2023-09-30T06:24:36,616 writing manifest file '/tmp/pip-pip-egg-info-jcoaji2m/gqlib.egg-info/SOURCES.txt' 2023-09-30T06:24:36,727 Preparing metadata (setup.py): finished with status 'done' 2023-09-30T06:24:36,731 Source in /tmp/pip-wheel-8hlqep4j/gqlib_debb88f9865f4b3ba14c2fb30c103e0f has version 2.14.3, which satisfies requirement gqlib==2.14.3 from https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz 2023-09-30T06:24:36,731 Removed gqlib==2.14.3 from https://files.pythonhosted.org/packages/4b/62/ee33383cee30261f245760366c88b12c19aad8a68823df4ba081103deaab/gqlib-2.14.3.tar.gz from build tracker '/tmp/pip-build-tracker-4tpd25gq' 2023-09-30T06:24:36,736 Created temporary directory: /tmp/pip-unpack-_ugar3tg 2023-09-30T06:24:36,737 Created temporary directory: /tmp/pip-unpack-_vvkh10x 2023-09-30T06:24:36,744 Building wheels for collected packages: gqlib 2023-09-30T06:24:36,748 Created temporary directory: /tmp/pip-wheel-upodutc6 2023-09-30T06:24:36,749 Building wheel for gqlib (setup.py): started 2023-09-30T06:24:36,750 Destination directory: /tmp/pip-wheel-upodutc6 2023-09-30T06:24:36,751 Running command python setup.py bdist_wheel 2023-09-30T06:24:37,202 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:24:37,203 !! 2023-09-30T06:24:37,204 ******************************************************************************** 2023-09-30T06:24:37,204 Usage of dash-separated 'description-file' will not be supported in future 2023-09-30T06:24:37,205 versions. Please use the underscore name 'description_file' instead. 2023-09-30T06:24:37,206 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:24:37,207 calls to avoid build errors in the future. 2023-09-30T06:24:37,208 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:24:37,208 ******************************************************************************** 2023-09-30T06:24:37,209 !! 2023-09-30T06:24:37,210 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:24:37,746 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:24:37,746 !! 2023-09-30T06:24:37,747 ******************************************************************************** 2023-09-30T06:24:37,748 Usage of dash-separated 'description-file' will not be supported in future 2023-09-30T06:24:37,749 versions. Please use the underscore name 'description_file' instead. 2023-09-30T06:24:37,751 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:24:37,752 calls to avoid build errors in the future. 2023-09-30T06:24:37,753 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:24:37,753 ******************************************************************************** 2023-09-30T06:24:37,754 !! 2023-09-30T06:24:37,754 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:24:37,780 running bdist_wheel 2023-09-30T06:24:37,911 running build 2023-09-30T06:24:37,912 running build_py 2023-09-30T06:24:37,941 creating build 2023-09-30T06:24:37,941 creating build/lib 2023-09-30T06:24:37,942 creating build/lib/gqlib_oldx 2023-09-30T06:24:37,943 copying gqlib_oldx/__init__.py -> build/lib/gqlib_oldx 2023-09-30T06:24:37,944 copying gqlib_oldx/__main__.py -> build/lib/gqlib_oldx 2023-09-30T06:24:37,946 copying gqlib_oldx/handle_args.py -> build/lib/gqlib_oldx 2023-09-30T06:24:37,949 creating build/lib/gqlib 2023-09-30T06:24:37,950 copying gqlib/__init__.py -> build/lib/gqlib 2023-09-30T06:24:37,951 copying gqlib/__main__.py -> build/lib/gqlib 2023-09-30T06:24:37,954 copying gqlib/handle_args.py -> build/lib/gqlib 2023-09-30T06:24:37,956 creating build/lib/gqlib_old 2023-09-30T06:24:37,957 copying gqlib_old/__init__.py -> build/lib/gqlib_old 2023-09-30T06:24:37,959 copying gqlib_old/__main__.py -> build/lib/gqlib_old 2023-09-30T06:24:37,961 copying gqlib_old/handle_args.py -> build/lib/gqlib_old 2023-09-30T06:24:37,963 creating build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,964 copying gqlib_oldx/counters/__init__.py -> build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,966 copying gqlib_oldx/counters/region_counter.py -> build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,968 copying gqlib_oldx/counters/alignment_counter.py -> build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,971 copying gqlib_oldx/counters/seq_counter.py -> build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,972 copying gqlib_oldx/counters/count_manager.py -> build/lib/gqlib_oldx/counters 2023-09-30T06:24:37,975 creating build/lib/gqlib_oldx/profilers 2023-09-30T06:24:37,976 copying gqlib_oldx/profilers/__init__.py -> build/lib/gqlib_oldx/profilers 2023-09-30T06:24:37,977 copying gqlib_oldx/profilers/feature_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-30T06:24:37,980 copying gqlib_oldx/profilers/gene_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-30T06:24:37,981 copying gqlib_oldx/profilers/region_quantifier.py -> build/lib/gqlib_oldx/profilers 2023-09-30T06:24:37,984 creating build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,985 copying gqlib_oldx/bin/__init__.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,986 copying gqlib_oldx/bin/collate_studies.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,988 copying gqlib_oldx/bin/collate_counts.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,990 copying gqlib_oldx/bin/split_table.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,992 copying gqlib_oldx/bin/build_custom_database.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,994 copying gqlib_oldx/bin/build_domain_database.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,996 copying gqlib_oldx/bin/build_gene_database.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:37,998 copying gqlib_oldx/bin/build_bed_database.py -> build/lib/gqlib_oldx/bin 2023-09-30T06:24:38,001 creating build/lib/gqlib_oldx/annotation 2023-09-30T06:24:38,002 copying gqlib_oldx/annotation/__init__.py -> build/lib/gqlib_oldx/annotation 2023-09-30T06:24:38,004 copying gqlib_oldx/annotation/count_writer.py -> build/lib/gqlib_oldx/annotation 2023-09-30T06:24:38,006 copying gqlib_oldx/annotation/count_annotator.py -> build/lib/gqlib_oldx/annotation 2023-09-30T06:24:38,008 creating build/lib/gqlib_oldx/alignment 2023-09-30T06:24:38,009 copying gqlib_oldx/alignment/__init__.py -> build/lib/gqlib_oldx/alignment 2023-09-30T06:24:38,011 copying gqlib_oldx/alignment/aln_group.py -> build/lib/gqlib_oldx/alignment 2023-09-30T06:24:38,013 copying gqlib_oldx/alignment/pysam_alignment_processor.py -> build/lib/gqlib_oldx/alignment 2023-09-30T06:24:38,014 copying gqlib_oldx/alignment/bamreader.py -> build/lib/gqlib_oldx/alignment 2023-09-30T06:24:38,017 creating build/lib/gqlib_oldx/db 2023-09-30T06:24:38,018 copying gqlib_oldx/db/__init__.py -> build/lib/gqlib_oldx/db 2023-09-30T06:24:38,020 copying gqlib_oldx/db/database.py -> build/lib/gqlib_oldx/db 2023-09-30T06:24:38,021 copying gqlib_oldx/db/db_import.py -> build/lib/gqlib_oldx/db 2023-09-30T06:24:38,023 copying gqlib_oldx/db/annotation_db.py -> build/lib/gqlib_oldx/db 2023-09-30T06:24:38,025 copying gqlib_oldx/db/gff_dbm.py -> build/lib/gqlib_oldx/db 2023-09-30T06:24:38,027 creating build/lib/gqlib_oldx/db/models 2023-09-30T06:24:38,028 copying gqlib_oldx/db/models/__init__.py -> build/lib/gqlib_oldx/db/models 2023-09-30T06:24:38,030 copying gqlib_oldx/db/models/meta.py -> build/lib/gqlib_oldx/db/models 2023-09-30T06:24:38,032 copying gqlib_oldx/db/models/db.py -> build/lib/gqlib_oldx/db/models 2023-09-30T06:24:38,034 creating build/lib/gqlib/runners 2023-09-30T06:24:38,034 copying gqlib/runners/__init__.py -> build/lib/gqlib/runners 2023-09-30T06:24:38,036 copying gqlib/runners/alignment_runner.py -> build/lib/gqlib/runners 2023-09-30T06:24:38,038 creating build/lib/gqlib/counters 2023-09-30T06:24:38,039 copying gqlib/counters/__init__.py -> build/lib/gqlib/counters 2023-09-30T06:24:38,041 copying gqlib/counters/region_counter.py -> build/lib/gqlib/counters 2023-09-30T06:24:38,042 copying gqlib/counters/alignment_counter.py -> build/lib/gqlib/counters 2023-09-30T06:24:38,044 copying gqlib/counters/seq_counter.py -> build/lib/gqlib/counters 2023-09-30T06:24:38,046 copying gqlib/counters/count_manager.py -> build/lib/gqlib/counters 2023-09-30T06:24:38,048 creating build/lib/gqlib/ui 2023-09-30T06:24:38,049 copying gqlib/ui/__init__.py -> build/lib/gqlib/ui 2023-09-30T06:24:38,051 copying gqlib/ui/validation.py -> build/lib/gqlib/ui 2023-09-30T06:24:38,053 creating build/lib/gqlib/profilers 2023-09-30T06:24:38,054 copying gqlib/profilers/__init__.py -> build/lib/gqlib/profilers 2023-09-30T06:24:38,056 copying gqlib/profilers/feature_quantifier.py -> build/lib/gqlib/profilers 2023-09-30T06:24:38,058 copying gqlib/profilers/gene_quantifier.py -> build/lib/gqlib/profilers 2023-09-30T06:24:38,060 copying gqlib/profilers/region_quantifier.py -> build/lib/gqlib/profilers 2023-09-30T06:24:38,062 creating build/lib/gqlib/bin 2023-09-30T06:24:38,063 copying gqlib/bin/__init__.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,065 copying gqlib/bin/collate_studies.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,067 copying gqlib/bin/collate_counts.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,069 copying gqlib/bin/db_collate.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,071 copying gqlib/bin/split_table.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,073 copying gqlib/bin/build_custom_database.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,075 copying gqlib/bin/build_domain_database.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,077 copying gqlib/bin/build_gene_database.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,079 copying gqlib/bin/build_bed_database.py -> build/lib/gqlib/bin 2023-09-30T06:24:38,081 creating build/lib/gqlib/annotation 2023-09-30T06:24:38,083 copying gqlib/annotation/__init__.py -> build/lib/gqlib/annotation 2023-09-30T06:24:38,084 copying gqlib/annotation/count_writer.py -> build/lib/gqlib/annotation 2023-09-30T06:24:38,086 copying gqlib/annotation/count_annotator.py -> build/lib/gqlib/annotation 2023-09-30T06:24:38,089 creating build/lib/gqlib/alignment 2023-09-30T06:24:38,090 copying gqlib/alignment/__init__.py -> build/lib/gqlib/alignment 2023-09-30T06:24:38,092 copying gqlib/alignment/aln_group.py -> build/lib/gqlib/alignment 2023-09-30T06:24:38,094 copying gqlib/alignment/pysam_alignment_processor.py -> build/lib/gqlib/alignment 2023-09-30T06:24:38,095 copying gqlib/alignment/bamreader.py -> build/lib/gqlib/alignment 2023-09-30T06:24:38,098 creating build/lib/gqlib/db 2023-09-30T06:24:38,099 copying gqlib/db/__init__.py -> build/lib/gqlib/db 2023-09-30T06:24:38,101 copying gqlib/db/database.py -> build/lib/gqlib/db 2023-09-30T06:24:38,102 copying gqlib/db/db_import.py -> build/lib/gqlib/db 2023-09-30T06:24:38,104 copying gqlib/db/annotation_db.py -> build/lib/gqlib/db 2023-09-30T06:24:38,106 copying gqlib/db/gff_dbm.py -> build/lib/gqlib/db 2023-09-30T06:24:38,109 creating build/lib/gqlib/db/models 2023-09-30T06:24:38,110 copying gqlib/db/models/__init__.py -> build/lib/gqlib/db/models 2023-09-30T06:24:38,111 copying gqlib/db/models/meta.py -> build/lib/gqlib/db/models 2023-09-30T06:24:38,113 copying gqlib/db/models/db.py -> build/lib/gqlib/db/models 2023-09-30T06:24:38,115 creating build/lib/gqlib_old/counters 2023-09-30T06:24:38,116 copying gqlib_old/counters/__init__.py -> build/lib/gqlib_old/counters 2023-09-30T06:24:38,118 copying gqlib_old/counters/region_counter.py -> build/lib/gqlib_old/counters 2023-09-30T06:24:38,119 copying gqlib_old/counters/alignment_counter.py -> build/lib/gqlib_old/counters 2023-09-30T06:24:38,121 copying gqlib_old/counters/seq_counter.py -> build/lib/gqlib_old/counters 2023-09-30T06:24:38,123 copying gqlib_old/counters/count_manager.py -> build/lib/gqlib_old/counters 2023-09-30T06:24:38,125 creating build/lib/gqlib_old/profilers 2023-09-30T06:24:38,126 copying gqlib_old/profilers/__init__.py -> build/lib/gqlib_old/profilers 2023-09-30T06:24:38,128 copying gqlib_old/profilers/feature_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-30T06:24:38,130 copying gqlib_old/profilers/gene_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-30T06:24:38,131 copying gqlib_old/profilers/region_quantifier.py -> build/lib/gqlib_old/profilers 2023-09-30T06:24:38,134 creating build/lib/gqlib_old/bin 2023-09-30T06:24:38,134 copying gqlib_old/bin/__init__.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,136 copying gqlib_old/bin/collate_studies.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,138 copying gqlib_old/bin/collate_counts.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,140 copying gqlib_old/bin/db_collate.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,142 copying gqlib_old/bin/split_table.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,143 copying gqlib_old/bin/build_custom_database.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,145 copying gqlib_old/bin/build_domain_database.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,147 copying gqlib_old/bin/db_collate2.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,149 copying gqlib_old/bin/build_gene_database.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,151 copying gqlib_old/bin/build_bed_database.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,153 copying gqlib_old/bin/build_pg3_database.py -> build/lib/gqlib_old/bin 2023-09-30T06:24:38,156 creating build/lib/gqlib_old/annotation 2023-09-30T06:24:38,156 copying gqlib_old/annotation/__init__.py -> build/lib/gqlib_old/annotation 2023-09-30T06:24:38,158 copying gqlib_old/annotation/count_writer.py -> build/lib/gqlib_old/annotation 2023-09-30T06:24:38,160 copying gqlib_old/annotation/count_annotator.py -> build/lib/gqlib_old/annotation 2023-09-30T06:24:38,163 creating build/lib/gqlib_old/alignment 2023-09-30T06:24:38,164 copying gqlib_old/alignment/__init__.py -> build/lib/gqlib_old/alignment 2023-09-30T06:24:38,166 copying gqlib_old/alignment/aln_group.py -> build/lib/gqlib_old/alignment 2023-09-30T06:24:38,168 copying gqlib_old/alignment/pysam_alignment_processor.py -> build/lib/gqlib_old/alignment 2023-09-30T06:24:38,170 copying gqlib_old/alignment/bamreader.py -> build/lib/gqlib_old/alignment 2023-09-30T06:24:38,172 creating build/lib/gqlib_old/db 2023-09-30T06:24:38,173 copying gqlib_old/db/__init__.py -> build/lib/gqlib_old/db 2023-09-30T06:24:38,175 copying gqlib_old/db/database.py -> build/lib/gqlib_old/db 2023-09-30T06:24:38,177 copying gqlib_old/db/db_import.py -> build/lib/gqlib_old/db 2023-09-30T06:24:38,178 copying gqlib_old/db/annotation_db.py -> build/lib/gqlib_old/db 2023-09-30T06:24:38,180 copying gqlib_old/db/gff_dbm.py -> build/lib/gqlib_old/db 2023-09-30T06:24:38,183 creating build/lib/gqlib_old/db/models 2023-09-30T06:24:38,184 copying gqlib_old/db/models/__init__.py -> build/lib/gqlib_old/db/models 2023-09-30T06:24:38,185 copying gqlib_old/db/models/meta.py -> build/lib/gqlib_old/db/models 2023-09-30T06:24:38,187 copying gqlib_old/db/models/db.py -> build/lib/gqlib_old/db/models 2023-09-30T06:24:38,188 running egg_info 2023-09-30T06:24:38,217 writing gqlib.egg-info/PKG-INFO 2023-09-30T06:24:38,220 writing dependency_links to gqlib.egg-info/dependency_links.txt 2023-09-30T06:24:38,221 writing requirements to gqlib.egg-info/requires.txt 2023-09-30T06:24:38,223 writing top-level names to gqlib.egg-info/top_level.txt 2023-09-30T06:24:38,261 reading manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-30T06:24:38,265 reading manifest template 'MANIFEST.in' 2023-09-30T06:24:38,266 adding license file 'LICENSE' 2023-09-30T06:24:38,272 writing manifest file 'gqlib.egg-info/SOURCES.txt' 2023-09-30T06:24:38,311 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-30T06:24:38,311 !! 2023-09-30T06:24:38,312 ******************************************************************************** 2023-09-30T06:24:38,313 Please avoid running ``setup.py`` directly. 2023-09-30T06:24:38,314 Instead, use pypa/build, pypa/installer or other 2023-09-30T06:24:38,314 standards-based tools. 2023-09-30T06:24:38,315 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-30T06:24:38,316 ******************************************************************************** 2023-09-30T06:24:38,317 !! 2023-09-30T06:24:38,318 self.initialize_options() 2023-09-30T06:24:38,339 installing to build/bdist.linux-armv7l/wheel 2023-09-30T06:24:38,340 running install 2023-09-30T06:24:38,364 running install_lib 2023-09-30T06:24:38,389 creating build/bdist.linux-armv7l 2023-09-30T06:24:38,390 creating build/bdist.linux-armv7l/wheel 2023-09-30T06:24:38,391 creating build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-30T06:24:38,392 copying build/lib/gqlib_oldx/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-30T06:24:38,395 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,396 copying build/lib/gqlib_oldx/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,397 copying build/lib/gqlib_oldx/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,399 copying build/lib/gqlib_oldx/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,401 copying build/lib/gqlib_oldx/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,403 copying build/lib/gqlib_oldx/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/counters 2023-09-30T06:24:38,406 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-30T06:24:38,407 copying build/lib/gqlib_oldx/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-30T06:24:38,409 copying build/lib/gqlib_oldx/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-30T06:24:38,411 copying build/lib/gqlib_oldx/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-30T06:24:38,413 copying build/lib/gqlib_oldx/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/profilers 2023-09-30T06:24:38,415 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,416 copying build/lib/gqlib_oldx/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,418 copying build/lib/gqlib_oldx/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,420 copying build/lib/gqlib_oldx/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,422 copying build/lib/gqlib_oldx/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,423 copying build/lib/gqlib_oldx/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,426 copying build/lib/gqlib_oldx/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,428 copying build/lib/gqlib_oldx/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,430 copying build/lib/gqlib_oldx/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/bin 2023-09-30T06:24:38,432 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-30T06:24:38,433 copying build/lib/gqlib_oldx/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-30T06:24:38,434 copying build/lib/gqlib_oldx/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-30T06:24:38,436 copying build/lib/gqlib_oldx/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/annotation 2023-09-30T06:24:38,439 copying build/lib/gqlib_oldx/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-30T06:24:38,441 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-30T06:24:38,442 copying build/lib/gqlib_oldx/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-30T06:24:38,443 copying build/lib/gqlib_oldx/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-30T06:24:38,445 copying build/lib/gqlib_oldx/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-30T06:24:38,447 copying build/lib/gqlib_oldx/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/alignment 2023-09-30T06:24:38,449 copying build/lib/gqlib_oldx/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx 2023-09-30T06:24:38,451 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,452 copying build/lib/gqlib_oldx/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,454 copying build/lib/gqlib_oldx/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,456 copying build/lib/gqlib_oldx/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,458 creating build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-30T06:24:38,459 copying build/lib/gqlib_oldx/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-30T06:24:38,461 copying build/lib/gqlib_oldx/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-30T06:24:38,463 copying build/lib/gqlib_oldx/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db/models 2023-09-30T06:24:38,464 copying build/lib/gqlib_oldx/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,466 copying build/lib/gqlib_oldx/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_oldx/db 2023-09-30T06:24:38,469 creating build/bdist.linux-armv7l/wheel/gqlib 2023-09-30T06:24:38,470 copying build/lib/gqlib/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-30T06:24:38,473 creating build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-30T06:24:38,474 copying build/lib/gqlib/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-30T06:24:38,475 copying build/lib/gqlib/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-09-30T06:24:38,478 creating build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,479 copying build/lib/gqlib/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,480 copying build/lib/gqlib/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,482 copying build/lib/gqlib/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,484 copying build/lib/gqlib/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,486 copying build/lib/gqlib/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-09-30T06:24:38,488 creating build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-30T06:24:38,489 copying build/lib/gqlib/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-30T06:24:38,491 copying build/lib/gqlib/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-09-30T06:24:38,493 creating build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-30T06:24:38,494 copying build/lib/gqlib/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-30T06:24:38,495 copying build/lib/gqlib/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-30T06:24:38,498 copying build/lib/gqlib/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-30T06:24:38,500 copying build/lib/gqlib/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-09-30T06:24:38,502 creating build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,503 copying build/lib/gqlib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,504 copying build/lib/gqlib/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,506 copying build/lib/gqlib/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,508 copying build/lib/gqlib/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,510 copying build/lib/gqlib/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,512 copying build/lib/gqlib/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,514 copying build/lib/gqlib/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,516 copying build/lib/gqlib/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,518 copying build/lib/gqlib/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-09-30T06:24:38,520 creating build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-30T06:24:38,521 copying build/lib/gqlib/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-30T06:24:38,523 copying build/lib/gqlib/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-30T06:24:38,525 copying build/lib/gqlib/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-09-30T06:24:38,528 copying build/lib/gqlib/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-30T06:24:38,530 creating build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-30T06:24:38,531 copying build/lib/gqlib/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-30T06:24:38,533 copying build/lib/gqlib/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-30T06:24:38,535 copying build/lib/gqlib/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-30T06:24:38,537 copying build/lib/gqlib/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-09-30T06:24:38,539 copying build/lib/gqlib/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-09-30T06:24:38,542 creating build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,543 copying build/lib/gqlib/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,544 copying build/lib/gqlib/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,546 copying build/lib/gqlib/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,548 creating build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-30T06:24:38,549 copying build/lib/gqlib/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-30T06:24:38,551 copying build/lib/gqlib/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-30T06:24:38,552 copying build/lib/gqlib/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-09-30T06:24:38,554 copying build/lib/gqlib/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,556 copying build/lib/gqlib/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-09-30T06:24:38,559 creating build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-30T06:24:38,559 copying build/lib/gqlib_old/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-30T06:24:38,561 creating build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,562 copying build/lib/gqlib_old/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,564 copying build/lib/gqlib_old/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,566 copying build/lib/gqlib_old/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,568 copying build/lib/gqlib_old/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,570 copying build/lib/gqlib_old/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-09-30T06:24:38,573 creating build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-30T06:24:38,574 copying build/lib/gqlib_old/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-30T06:24:38,576 copying build/lib/gqlib_old/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-30T06:24:38,578 copying build/lib/gqlib_old/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-30T06:24:38,580 copying build/lib/gqlib_old/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-09-30T06:24:38,582 creating build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,583 copying build/lib/gqlib_old/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,585 copying build/lib/gqlib_old/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,587 copying build/lib/gqlib_old/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,589 copying build/lib/gqlib_old/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,591 copying build/lib/gqlib_old/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,593 copying build/lib/gqlib_old/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,595 copying build/lib/gqlib_old/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,597 copying build/lib/gqlib_old/bin/db_collate2.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,599 copying build/lib/gqlib_old/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,601 copying build/lib/gqlib_old/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,603 copying build/lib/gqlib_old/bin/build_pg3_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-09-30T06:24:38,606 creating build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-30T06:24:38,607 copying build/lib/gqlib_old/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-30T06:24:38,609 copying build/lib/gqlib_old/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-30T06:24:38,611 copying build/lib/gqlib_old/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-09-30T06:24:38,613 copying build/lib/gqlib_old/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-30T06:24:38,616 creating build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-30T06:24:38,617 copying build/lib/gqlib_old/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-30T06:24:38,618 copying build/lib/gqlib_old/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-30T06:24:38,620 copying build/lib/gqlib_old/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-30T06:24:38,622 copying build/lib/gqlib_old/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-09-30T06:24:38,624 copying build/lib/gqlib_old/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-09-30T06:24:38,626 creating build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,627 copying build/lib/gqlib_old/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,629 copying build/lib/gqlib_old/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,630 copying build/lib/gqlib_old/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,632 creating build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-30T06:24:38,633 copying build/lib/gqlib_old/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-30T06:24:38,635 copying build/lib/gqlib_old/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-30T06:24:38,636 copying build/lib/gqlib_old/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-09-30T06:24:38,638 copying build/lib/gqlib_old/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,640 copying build/lib/gqlib_old/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-09-30T06:24:38,642 running install_egg_info 2023-09-30T06:24:38,673 Copying gqlib.egg-info to build/bdist.linux-armv7l/wheel/gqlib-2.14.3-py3.11.egg-info 2023-09-30T06:24:38,684 running install_scripts 2023-09-30T06:24:38,697 creating build/bdist.linux-armv7l/wheel/gqlib-2.14.3.dist-info/WHEEL 2023-09-30T06:24:38,699 creating '/tmp/pip-wheel-upodutc6/gqlib-2.14.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-30T06:24:38,702 adding 'gqlib/__init__.py' 2023-09-30T06:24:38,703 adding 'gqlib/__main__.py' 2023-09-30T06:24:38,705 adding 'gqlib/handle_args.py' 2023-09-30T06:24:38,707 adding 'gqlib/alignment/__init__.py' 2023-09-30T06:24:38,708 adding 'gqlib/alignment/aln_group.py' 2023-09-30T06:24:38,711 adding 'gqlib/alignment/bamreader.py' 2023-09-30T06:24:38,712 adding 'gqlib/alignment/pysam_alignment_processor.py' 2023-09-30T06:24:38,714 adding 'gqlib/annotation/__init__.py' 2023-09-30T06:24:38,716 adding 'gqlib/annotation/count_annotator.py' 2023-09-30T06:24:38,718 adding 'gqlib/annotation/count_writer.py' 2023-09-30T06:24:38,719 adding 'gqlib/bin/__init__.py' 2023-09-30T06:24:38,721 adding 'gqlib/bin/build_bed_database.py' 2023-09-30T06:24:38,723 adding 'gqlib/bin/build_custom_database.py' 2023-09-30T06:24:38,724 adding 'gqlib/bin/build_domain_database.py' 2023-09-30T06:24:38,726 adding 'gqlib/bin/build_gene_database.py' 2023-09-30T06:24:38,727 adding 'gqlib/bin/collate_counts.py' 2023-09-30T06:24:38,729 adding 'gqlib/bin/collate_studies.py' 2023-09-30T06:24:38,730 adding 'gqlib/bin/db_collate.py' 2023-09-30T06:24:38,732 adding 'gqlib/bin/split_table.py' 2023-09-30T06:24:38,734 adding 'gqlib/counters/__init__.py' 2023-09-30T06:24:38,735 adding 'gqlib/counters/alignment_counter.py' 2023-09-30T06:24:38,736 adding 'gqlib/counters/count_manager.py' 2023-09-30T06:24:38,738 adding 'gqlib/counters/region_counter.py' 2023-09-30T06:24:38,739 adding 'gqlib/counters/seq_counter.py' 2023-09-30T06:24:38,741 adding 'gqlib/db/__init__.py' 2023-09-30T06:24:38,742 adding 'gqlib/db/annotation_db.py' 2023-09-30T06:24:38,743 adding 'gqlib/db/database.py' 2023-09-30T06:24:38,744 adding 'gqlib/db/db_import.py' 2023-09-30T06:24:38,746 adding 'gqlib/db/gff_dbm.py' 2023-09-30T06:24:38,748 adding 'gqlib/db/models/__init__.py' 2023-09-30T06:24:38,749 adding 'gqlib/db/models/db.py' 2023-09-30T06:24:38,750 adding 'gqlib/db/models/meta.py' 2023-09-30T06:24:38,752 adding 'gqlib/profilers/__init__.py' 2023-09-30T06:24:38,754 adding 'gqlib/profilers/feature_quantifier.py' 2023-09-30T06:24:38,755 adding 'gqlib/profilers/gene_quantifier.py' 2023-09-30T06:24:38,756 adding 'gqlib/profilers/region_quantifier.py' 2023-09-30T06:24:38,758 adding 'gqlib/runners/__init__.py' 2023-09-30T06:24:38,759 adding 'gqlib/runners/alignment_runner.py' 2023-09-30T06:24:38,761 adding 'gqlib/ui/__init__.py' 2023-09-30T06:24:38,762 adding 'gqlib/ui/validation.py' 2023-09-30T06:24:38,764 adding 'gqlib_old/__init__.py' 2023-09-30T06:24:38,766 adding 'gqlib_old/__main__.py' 2023-09-30T06:24:38,768 adding 'gqlib_old/handle_args.py' 2023-09-30T06:24:38,770 adding 'gqlib_old/alignment/__init__.py' 2023-09-30T06:24:38,771 adding 'gqlib_old/alignment/aln_group.py' 2023-09-30T06:24:38,774 adding 'gqlib_old/alignment/bamreader.py' 2023-09-30T06:24:38,775 adding 'gqlib_old/alignment/pysam_alignment_processor.py' 2023-09-30T06:24:38,777 adding 'gqlib_old/annotation/__init__.py' 2023-09-30T06:24:38,779 adding 'gqlib_old/annotation/count_annotator.py' 2023-09-30T06:24:38,781 adding 'gqlib_old/annotation/count_writer.py' 2023-09-30T06:24:38,782 adding 'gqlib_old/bin/__init__.py' 2023-09-30T06:24:38,784 adding 'gqlib_old/bin/build_bed_database.py' 2023-09-30T06:24:38,786 adding 'gqlib_old/bin/build_custom_database.py' 2023-09-30T06:24:38,787 adding 'gqlib_old/bin/build_domain_database.py' 2023-09-30T06:24:38,789 adding 'gqlib_old/bin/build_gene_database.py' 2023-09-30T06:24:38,790 adding 'gqlib_old/bin/build_pg3_database.py' 2023-09-30T06:24:38,792 adding 'gqlib_old/bin/collate_counts.py' 2023-09-30T06:24:38,794 adding 'gqlib_old/bin/collate_studies.py' 2023-09-30T06:24:38,795 adding 'gqlib_old/bin/db_collate.py' 2023-09-30T06:24:38,796 adding 'gqlib_old/bin/db_collate2.py' 2023-09-30T06:24:38,798 adding 'gqlib_old/bin/split_table.py' 2023-09-30T06:24:38,799 adding 'gqlib_old/counters/__init__.py' 2023-09-30T06:24:38,801 adding 'gqlib_old/counters/alignment_counter.py' 2023-09-30T06:24:38,802 adding 'gqlib_old/counters/count_manager.py' 2023-09-30T06:24:38,804 adding 'gqlib_old/counters/region_counter.py' 2023-09-30T06:24:38,805 adding 'gqlib_old/counters/seq_counter.py' 2023-09-30T06:24:38,807 adding 'gqlib_old/db/__init__.py' 2023-09-30T06:24:38,809 adding 'gqlib_old/db/annotation_db.py' 2023-09-30T06:24:38,810 adding 'gqlib_old/db/database.py' 2023-09-30T06:24:38,812 adding 'gqlib_old/db/db_import.py' 2023-09-30T06:24:38,814 adding 'gqlib_old/db/gff_dbm.py' 2023-09-30T06:24:38,816 adding 'gqlib_old/db/models/__init__.py' 2023-09-30T06:24:38,817 adding 'gqlib_old/db/models/db.py' 2023-09-30T06:24:38,818 adding 'gqlib_old/db/models/meta.py' 2023-09-30T06:24:38,820 adding 'gqlib_old/profilers/__init__.py' 2023-09-30T06:24:38,822 adding 'gqlib_old/profilers/feature_quantifier.py' 2023-09-30T06:24:38,823 adding 'gqlib_old/profilers/gene_quantifier.py' 2023-09-30T06:24:38,825 adding 'gqlib_old/profilers/region_quantifier.py' 2023-09-30T06:24:38,826 adding 'gqlib_oldx/__init__.py' 2023-09-30T06:24:38,828 adding 'gqlib_oldx/__main__.py' 2023-09-30T06:24:38,829 adding 'gqlib_oldx/handle_args.py' 2023-09-30T06:24:38,831 adding 'gqlib_oldx/alignment/__init__.py' 2023-09-30T06:24:38,832 adding 'gqlib_oldx/alignment/aln_group.py' 2023-09-30T06:24:38,834 adding 'gqlib_oldx/alignment/bamreader.py' 2023-09-30T06:24:38,836 adding 'gqlib_oldx/alignment/pysam_alignment_processor.py' 2023-09-30T06:24:38,838 adding 'gqlib_oldx/annotation/__init__.py' 2023-09-30T06:24:38,839 adding 'gqlib_oldx/annotation/count_annotator.py' 2023-09-30T06:24:38,841 adding 'gqlib_oldx/annotation/count_writer.py' 2023-09-30T06:24:38,842 adding 'gqlib_oldx/bin/__init__.py' 2023-09-30T06:24:38,844 adding 'gqlib_oldx/bin/build_bed_database.py' 2023-09-30T06:24:38,845 adding 'gqlib_oldx/bin/build_custom_database.py' 2023-09-30T06:24:38,847 adding 'gqlib_oldx/bin/build_domain_database.py' 2023-09-30T06:24:38,848 adding 'gqlib_oldx/bin/build_gene_database.py' 2023-09-30T06:24:38,850 adding 'gqlib_oldx/bin/collate_counts.py' 2023-09-30T06:24:38,851 adding 'gqlib_oldx/bin/collate_studies.py' 2023-09-30T06:24:38,853 adding 'gqlib_oldx/bin/split_table.py' 2023-09-30T06:24:38,854 adding 'gqlib_oldx/counters/__init__.py' 2023-09-30T06:24:38,855 adding 'gqlib_oldx/counters/alignment_counter.py' 2023-09-30T06:24:38,857 adding 'gqlib_oldx/counters/count_manager.py' 2023-09-30T06:24:38,858 adding 'gqlib_oldx/counters/region_counter.py' 2023-09-30T06:24:38,859 adding 'gqlib_oldx/counters/seq_counter.py' 2023-09-30T06:24:38,861 adding 'gqlib_oldx/db/__init__.py' 2023-09-30T06:24:38,862 adding 'gqlib_oldx/db/annotation_db.py' 2023-09-30T06:24:38,863 adding 'gqlib_oldx/db/database.py' 2023-09-30T06:24:38,865 adding 'gqlib_oldx/db/db_import.py' 2023-09-30T06:24:38,866 adding 'gqlib_oldx/db/gff_dbm.py' 2023-09-30T06:24:38,868 adding 'gqlib_oldx/db/models/__init__.py' 2023-09-30T06:24:38,869 adding 'gqlib_oldx/db/models/db.py' 2023-09-30T06:24:38,870 adding 'gqlib_oldx/db/models/meta.py' 2023-09-30T06:24:38,872 adding 'gqlib_oldx/profilers/__init__.py' 2023-09-30T06:24:38,874 adding 'gqlib_oldx/profilers/feature_quantifier.py' 2023-09-30T06:24:38,875 adding 'gqlib_oldx/profilers/gene_quantifier.py' 2023-09-30T06:24:38,876 adding 'gqlib_oldx/profilers/region_quantifier.py' 2023-09-30T06:24:38,878 adding 'gqlib-2.14.3.dist-info/LICENSE' 2023-09-30T06:24:38,879 adding 'gqlib-2.14.3.dist-info/METADATA' 2023-09-30T06:24:38,879 adding 'gqlib-2.14.3.dist-info/WHEEL' 2023-09-30T06:24:38,880 adding 'gqlib-2.14.3.dist-info/top_level.txt' 2023-09-30T06:24:38,882 adding 'gqlib-2.14.3.dist-info/RECORD' 2023-09-30T06:24:38,887 removing build/bdist.linux-armv7l/wheel 2023-09-30T06:24:39,032 Building wheel for gqlib (setup.py): finished with status 'done' 2023-09-30T06:24:39,036 Created wheel for gqlib: filename=gqlib-2.14.3-py3-none-any.whl size=154078 sha256=ebd6ca6c85e0a35ac9530341546bcc8b4ee43c5ad75e83b09f9e0db8b5ec9a01 2023-09-30T06:24:39,037 Stored in directory: /tmp/pip-ephem-wheel-cache-o0fh68ma/wheels/ee/bb/3c/77a0e7ce592cb5021f80379e70ff01f4e38e336801cf3a18f8 2023-09-30T06:24:39,050 Successfully built gqlib 2023-09-30T06:24:39,056 Removed build tracker: '/tmp/pip-build-tracker-4tpd25gq'