2023-09-30T06:25:54,806 Created temporary directory: /tmp/pip-build-tracker-7k3vqme8 2023-09-30T06:25:54,807 Initialized build tracking at /tmp/pip-build-tracker-7k3vqme8 2023-09-30T06:25:54,807 Created build tracker: /tmp/pip-build-tracker-7k3vqme8 2023-09-30T06:25:54,808 Entered build tracker: /tmp/pip-build-tracker-7k3vqme8 2023-09-30T06:25:54,809 Created temporary directory: /tmp/pip-wheel-a8ej1fti 2023-09-30T06:25:54,812 Created temporary directory: /tmp/pip-ephem-wheel-cache-5ke99deu 2023-09-30T06:25:54,834 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-30T06:25:54,838 2 location(s) to search for versions of vermouth: 2023-09-30T06:25:54,838 * https://pypi.org/simple/vermouth/ 2023-09-30T06:25:54,838 * https://www.piwheels.org/simple/vermouth/ 2023-09-30T06:25:54,839 Fetching project page and analyzing links: https://pypi.org/simple/vermouth/ 2023-09-30T06:25:54,840 Getting page https://pypi.org/simple/vermouth/ 2023-09-30T06:25:54,841 Found index url https://pypi.org/simple/ 2023-09-30T06:25:54,985 Fetched page https://pypi.org/simple/vermouth/ as application/vnd.pypi.simple.v1+json 2023-09-30T06:25:54,992 Found link https://files.pythonhosted.org/packages/c6/b1/274b76764e2ebe0b190708befe8a588d5b645f096609f68723139c80fdee/vermouth-0.1.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.1.0 2023-09-30T06:25:54,993 Found link https://files.pythonhosted.org/packages/ee/d9/cc8ed35bf50924fa9bf4d450c620f6f0f45254b00b30c2fe1a7f76b00368/vermouth-0.2.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.2.0 2023-09-30T06:25:54,993 Found link https://files.pythonhosted.org/packages/c7/6b/bf90515318a6a1c4e2994db43469e52e638d16400068dfcb7d478e9b7c1a/vermouth-0.3.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.0 2023-09-30T06:25:54,994 Found link https://files.pythonhosted.org/packages/b2/d5/07402db0608b5e2bdfbf3f8858ccfd2f454f382f50e4a6940b763426cbea/vermouth-0.3.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.1 2023-09-30T06:25:54,995 Found link https://files.pythonhosted.org/packages/bf/6e/b4e991b3fe595aca6a31cc0449c66b240f50edbf12ebfe80f0d0e592cd5e/vermouth-0.4.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.0 2023-09-30T06:25:54,996 Found link https://files.pythonhosted.org/packages/2c/72/107e8be40ef06f07a809105debbfb1278aceaee8c363189b9c09fe44f8a2/vermouth-0.4.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.1 2023-09-30T06:25:54,996 Found link https://files.pythonhosted.org/packages/d2/86/6cc920072226d0a6e5c0e0a28f85414722b023c66c3cccaaf3492ded2cba/vermouth-0.5.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.5.0 2023-09-30T06:25:54,997 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/ee/ff/589eae88b25a30d0b086231b459f2927ede30c9ef57e92b84a4d479775f2/vermouth-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:54,998 Found link https://files.pythonhosted.org/packages/de/df/6ec1631c808589b3eb5dfbb8e22df2803fde0750c30e6305148f14d72256/vermouth-0.6.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.0 2023-09-30T06:25:54,998 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/de/1f/a29254c72edc7bc749c16f3bf621baa85c6883567469ebcc068b6771abb4/vermouth-0.6.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:54,999 Found link https://files.pythonhosted.org/packages/f5/75/24a94d58fdd58770f2df5325d29034dbd0a072a0bd99905507a297dc3796/vermouth-0.6.1.dev1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.1.dev1 2023-09-30T06:25:55,000 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b8/87/07db5eba7bf97abf229dbf76ff759a877057bf94cffff0ded5909422d14a/vermouth-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,000 Found link https://files.pythonhosted.org/packages/94/1f/e6e57cdc03b6afb830671707bffbfccefd383b3efc9dbe086c1d9037c34d/vermouth-0.7.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.0 2023-09-30T06:25:55,001 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/18/d3/2998a0d56963a85358f7fe385adb3eb9d660c1ce771057008afd5cfd6901/vermouth-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,002 Found link https://files.pythonhosted.org/packages/43/0b/d6cd081c035a321c1149cd8625fad98d969d6413327bbde731f4d30c5e4f/vermouth-0.7.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.1 2023-09-30T06:25:55,002 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/3a/cb877fe0c178bce0e16ddda0c34fd57902248b07938e3cb72bc1c78bc0d1/vermouth-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,003 Found link https://files.pythonhosted.org/packages/56/a1/1e5a5d54a4d1aed5d50645e5adc4ad026636c1e837d56adce10a54463ad6/vermouth-0.7.2.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.2 2023-09-30T06:25:55,003 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/20/f41a35c1b011d730614adab6923c713a58b7731b28b6488e8190a009aec2/vermouth-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,004 Found link https://files.pythonhosted.org/packages/7d/78/12e0752ceab663c708253421692fbc1ee3b1184e1918e2fbc9b06f4f9097/vermouth-0.7.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.3 2023-09-30T06:25:55,004 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/52/34/e7b82dc063e327fc8f47ab01d2b27363ebd3778e8f45d90ec8ad38486480/vermouth-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,005 Found link https://files.pythonhosted.org/packages/1a/49/4e20bde1dbaab255a469c7944c1e6a767e7449e1dd5b20e3f2524083d6eb/vermouth-0.8.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.8.1 2023-09-30T06:25:55,006 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/7e/a1/549f337abec9f3a02d249895a849d3d500008e1d39beb38582c97654e949/vermouth-0.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,006 Found link https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.0 2023-09-30T06:25:55,007 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/57/ac/ab6dc7c67e51a2a64dd830a992d3e8e23e785532a87c4e19527cd548bb97/vermouth-0.9.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,008 Found link https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.1 2023-09-30T06:25:55,008 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/49/75/4ec22d12b99a6be70538a808b22498875fe370f7a80155adc7c3df890c80/vermouth-0.9.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,009 Found link https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.3 2023-09-30T06:25:55,010 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/c5/b8/a35f4f3c9002c38cc912089d3309daae1c3b60021286badbb606362b4d4e/vermouth-0.9.5-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,010 Found link https://files.pythonhosted.org/packages/0a/9b/b4318b5b2e2ec08885ac6eaf41e0fab500d3eb77341c1556e283b7bda837/vermouth-0.9.5.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.5 2023-09-30T06:25:55,011 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/e9/50/d3f5301305901af444be9e6d18fdde39bb54794104eb77f75c8a1ab39808/vermouth-0.9.6-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-09-30T06:25:55,012 Found link https://files.pythonhosted.org/packages/f2/1e/703491e3de4fd3c249d1df055007c42352ebf22a0cefe6c666f99c880576/vermouth-0.9.6.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.6 2023-09-30T06:25:55,013 Fetching project page and analyzing links: https://www.piwheels.org/simple/vermouth/ 2023-09-30T06:25:55,014 Getting page https://www.piwheels.org/simple/vermouth/ 2023-09-30T06:25:55,015 Found index url https://www.piwheels.org/simple/ 2023-09-30T06:25:55,191 Fetched page https://www.piwheels.org/simple/vermouth/ as text/html 2023-09-30T06:25:55,196 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.5-py2.py3-none-any.whl#sha256=b59fbef1a8f42539625f80181897a6bab10ab1aa9dd00a8ced5bcd6a5e9090ab (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,197 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.3-py2.py3-none-any.whl#sha256=28c579c2c0792f6e9e78f0ab16f165a1c83a2d5e1e4db5b46b528a9f13127af7 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,198 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.1-py2.py3-none-any.whl#sha256=d081aae0aa5c3bf9d4d2af5221874610db58acfca8080f5cb45f3e76d4624bd8 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,198 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.0-py2.py3-none-any.whl#sha256=af7e389a682ab361277dba8792edfca3ef6ca68d5884be63696c233885c5d31c (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,198 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.8.1-py2.py3-none-any.whl#sha256=f0c9d27ed8796568f7aa9dd2294d10d07fa0f27764ebc2d85ce2715ec2c6a5e5 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,199 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.3-py2.py3-none-any.whl#sha256=a151dce5369142ce6d19a3988e0a1746288f8f2fae07ba59c5e1547df88ad1e3 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,200 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.2-py2.py3-none-any.whl#sha256=229f973ded59ef7883ba4f6fbfa96540cdf40b1b961b12efdbe7d5cb81fac6a1 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,200 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.1-py2.py3-none-any.whl#sha256=fc70883831d576793246091cafc7b008f187bc4faf6a8e560307ab7481e832f2 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,201 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.0-py2.py3-none-any.whl#sha256=5fca42314e68189e5e41f8e4b1722a1b93e3522c211a4504fa1e329991804768 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,202 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.1.dev1-py2.py3-none-any.whl#sha256=40b89874779133125b2ceda6a869dfaee2f00ebbeb4eab86903eb35cf0f51102 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,202 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.0-py2.py3-none-any.whl#sha256=eacf3828c494728c7a206f78e8b3845eed24ca2f25b522c618260811f03231fe (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,203 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.5.0-py2.py3-none-any.whl#sha256=d2dcb086df80653b9602029af7363d8ba15a3660a9eed6f9d5c62f3156f231d2 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,203 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.1-py2.py3-none-any.whl#sha256=7b29e1249b460cbf99396d25d6b7898d394a4f354f06f4574240f9226aaf70de (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,204 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.0-py2.py3-none-any.whl#sha256=1e8e41f2ade8de1b613de4a5fba5a29828bbd23b449c1c6fc503ab0dd52aa61f (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,205 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.1-py2.py3-none-any.whl#sha256=3431b025e519118e06c5ccb19b7a28cbf5f40fc6029496521569f2647a0fab3a (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,205 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.0-py2.py3-none-any.whl#sha256=164322a4f376c6a503756677793912d937dfb6330f3973c9dc8fdb89eafa44e3 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,206 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.2.0-py2.py3-none-any.whl#sha256=bc59509223e3450150b291f42032d3cea874b0544820fe778507ccca510f03b5 (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,206 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.1.0-py2.py3-none-any.whl#sha256=28068403a9546c028aca0d749c0401d00d6aa1ec66f1cf8bb91f8e293294cc2e (from https://www.piwheels.org/simple/vermouth/) 2023-09-30T06:25:55,206 Skipping link: not a file: https://www.piwheels.org/simple/vermouth/ 2023-09-30T06:25:55,207 Skipping link: not a file: https://pypi.org/simple/vermouth/ 2023-09-30T06:25:55,227 Given no hashes to check 1 links for project 'vermouth': discarding no candidates 2023-09-30T06:25:55,245 Collecting vermouth==0.9.6 2023-09-30T06:25:55,248 Created temporary directory: /tmp/pip-unpack-7fa5dtvl 2023-09-30T06:25:55,467 Downloading vermouth-0.9.6.tar.gz (2.5 MB) 2023-09-30T06:25:57,625 Added vermouth==0.9.6 from https://files.pythonhosted.org/packages/f2/1e/703491e3de4fd3c249d1df055007c42352ebf22a0cefe6c666f99c880576/vermouth-0.9.6.tar.gz to build tracker '/tmp/pip-build-tracker-7k3vqme8' 2023-09-30T06:25:57,630 Created temporary directory: /tmp/pip-build-env-_ickv_yg 2023-09-30T06:25:57,634 Installing build dependencies: started 2023-09-30T06:25:57,635 Running command pip subprocess to install build dependencies 2023-09-30T06:25:58,803 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-09-30T06:25:59,333 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-30T06:25:59,842 Collecting wheel 2023-09-30T06:25:59,861 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-09-30T06:26:01,169 Collecting setuptools>=30.3.0 2023-09-30T06:26:01,244 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-09-30T06:26:01,468 Collecting pbr 2023-09-30T06:26:01,497 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.1-py2.py3-none-any.whl (112 kB) 2023-09-30T06:26:04,081 Installing collected packages: wheel, setuptools, pbr 2023-09-30T06:26:04,309 Creating /tmp/pip-build-env-_ickv_yg/overlay/local/bin 2023-09-30T06:26:04,311 changing mode of /tmp/pip-build-env-_ickv_yg/overlay/local/bin/wheel to 755 2023-09-30T06:26:06,937 changing mode of /tmp/pip-build-env-_ickv_yg/overlay/local/bin/pbr to 755 2023-09-30T06:26:06,957 Successfully installed pbr-5.11.1 setuptools-68.2.2 wheel-0.41.2 2023-09-30T06:26:07,501 Installing build dependencies: finished with status 'done' 2023-09-30T06:26:07,514 Getting requirements to build wheel: started 2023-09-30T06:26:07,516 Running command Getting requirements to build wheel 2023-09-30T06:26:08,029 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,029 !! 2023-09-30T06:26:08,031 ******************************************************************************** 2023-09-30T06:26:08,031 Usage of dash-separated 'description-content-type' will not be supported in future 2023-09-30T06:26:08,031 versions. Please use the underscore name 'description_content_type' instead. 2023-09-30T06:26:08,032 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,033 calls to avoid build errors in the future. 2023-09-30T06:26:08,033 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,034 ******************************************************************************** 2023-09-30T06:26:08,035 !! 2023-09-30T06:26:08,035 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,042 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,043 !! 2023-09-30T06:26:08,044 ******************************************************************************** 2023-09-30T06:26:08,044 Usage of dash-separated 'setup-requires' will not be supported in future 2023-09-30T06:26:08,044 versions. Please use the underscore name 'setup_requires' instead. 2023-09-30T06:26:08,046 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,046 calls to avoid build errors in the future. 2023-09-30T06:26:08,047 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,048 ******************************************************************************** 2023-09-30T06:26:08,049 !! 2023-09-30T06:26:08,050 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,051 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,051 !! 2023-09-30T06:26:08,053 ******************************************************************************** 2023-09-30T06:26:08,053 Usage of dash-separated 'install-requires' will not be supported in future 2023-09-30T06:26:08,054 versions. Please use the underscore name 'install_requires' instead. 2023-09-30T06:26:08,055 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,055 calls to avoid build errors in the future. 2023-09-30T06:26:08,056 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,057 ******************************************************************************** 2023-09-30T06:26:08,058 !! 2023-09-30T06:26:08,059 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,059 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,060 !! 2023-09-30T06:26:08,061 ******************************************************************************** 2023-09-30T06:26:08,061 Usage of dash-separated 'zip-safe' will not be supported in future 2023-09-30T06:26:08,062 versions. Please use the underscore name 'zip_safe' instead. 2023-09-30T06:26:08,063 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,064 calls to avoid build errors in the future. 2023-09-30T06:26:08,065 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,065 ******************************************************************************** 2023-09-30T06:26:08,066 !! 2023-09-30T06:26:08,067 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,151 Getting requirements to build wheel: finished with status 'done' 2023-09-30T06:26:08,174 Created temporary directory: /tmp/pip-modern-metadata-zt1_p_79 2023-09-30T06:26:08,176 Preparing metadata (pyproject.toml): started 2023-09-30T06:26:08,177 Running command Preparing metadata (pyproject.toml) 2023-09-30T06:26:08,857 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-09-30T06:26:08,858 !! 2023-09-30T06:26:08,859 ******************************************************************************** 2023-09-30T06:26:08,859 Please avoid running ``setup.py`` and ``easy_install``. 2023-09-30T06:26:08,860 Instead, use pypa/build, pypa/installer or other 2023-09-30T06:26:08,860 standards-based tools. 2023-09-30T06:26:08,861 See https://github.com/pypa/setuptools/issues/917 for details. 2023-09-30T06:26:08,861 ******************************************************************************** 2023-09-30T06:26:08,862 !! 2023-09-30T06:26:08,863 easy_install.initialize_options(self) 2023-09-30T06:26:08,863 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-30T06:26:08,864 !! 2023-09-30T06:26:08,865 ******************************************************************************** 2023-09-30T06:26:08,865 Please avoid running ``setup.py`` directly. 2023-09-30T06:26:08,865 Instead, use pypa/build, pypa/installer or other 2023-09-30T06:26:08,866 standards-based tools. 2023-09-30T06:26:08,867 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-30T06:26:08,867 ******************************************************************************** 2023-09-30T06:26:08,868 !! 2023-09-30T06:26:08,869 self.initialize_options() 2023-09-30T06:26:08,877 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,878 !! 2023-09-30T06:26:08,879 ******************************************************************************** 2023-09-30T06:26:08,879 Usage of dash-separated 'description-content-type' will not be supported in future 2023-09-30T06:26:08,880 versions. Please use the underscore name 'description_content_type' instead. 2023-09-30T06:26:08,881 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,882 calls to avoid build errors in the future. 2023-09-30T06:26:08,883 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,883 ******************************************************************************** 2023-09-30T06:26:08,884 !! 2023-09-30T06:26:08,885 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,891 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,892 !! 2023-09-30T06:26:08,893 ******************************************************************************** 2023-09-30T06:26:08,893 Usage of dash-separated 'setup-requires' will not be supported in future 2023-09-30T06:26:08,894 versions. Please use the underscore name 'setup_requires' instead. 2023-09-30T06:26:08,895 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,896 calls to avoid build errors in the future. 2023-09-30T06:26:08,897 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,898 ******************************************************************************** 2023-09-30T06:26:08,899 !! 2023-09-30T06:26:08,899 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,900 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,900 !! 2023-09-30T06:26:08,901 ******************************************************************************** 2023-09-30T06:26:08,901 Usage of dash-separated 'install-requires' will not be supported in future 2023-09-30T06:26:08,902 versions. Please use the underscore name 'install_requires' instead. 2023-09-30T06:26:08,903 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,903 calls to avoid build errors in the future. 2023-09-30T06:26:08,904 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,904 ******************************************************************************** 2023-09-30T06:26:08,905 !! 2023-09-30T06:26:08,905 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,906 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:08,906 !! 2023-09-30T06:26:08,907 ******************************************************************************** 2023-09-30T06:26:08,908 Usage of dash-separated 'zip-safe' will not be supported in future 2023-09-30T06:26:08,908 versions. Please use the underscore name 'zip_safe' instead. 2023-09-30T06:26:08,909 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:08,910 calls to avoid build errors in the future. 2023-09-30T06:26:08,911 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:08,911 ******************************************************************************** 2023-09-30T06:26:08,912 !! 2023-09-30T06:26:08,913 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:08,936 running dist_info 2023-09-30T06:26:08,938 creating /tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info 2023-09-30T06:26:08,956 writing /tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/PKG-INFO 2023-09-30T06:26:08,960 writing dependency_links to /tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/dependency_links.txt 2023-09-30T06:26:08,962 writing requirements to /tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/requires.txt 2023-09-30T06:26:08,963 writing top-level names to /tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/top_level.txt 2023-09-30T06:26:08,964 [pbr] Processing SOURCES.txt 2023-09-30T06:26:08,965 writing manifest file '/tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/SOURCES.txt' 2023-09-30T06:26:09,153 warning: no files found matching 'AUTHORS' 2023-09-30T06:26:09,154 warning: no files found matching 'ChangeLog' 2023-09-30T06:26:09,154 warning: no previously-included files found matching '.gitignore' 2023-09-30T06:26:09,155 warning: no previously-included files found matching '.gitreview' 2023-09-30T06:26:09,157 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-30T06:26:09,226 adding license file 'LICENSE' 2023-09-30T06:26:09,244 writing manifest file '/tmp/pip-modern-metadata-zt1_p_79/vermouth.egg-info/SOURCES.txt' 2023-09-30T06:26:09,246 creating '/tmp/pip-modern-metadata-zt1_p_79/vermouth-0.9.6.dist-info' 2023-09-30T06:26:09,306 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-30T06:26:09,447 Preparing metadata (pyproject.toml): finished with status 'done' 2023-09-30T06:26:09,451 Source in /tmp/pip-wheel-a8ej1fti/vermouth_f49f255586da44f98d63ec2d70ff7f66 has version 0.9.6, which satisfies requirement vermouth==0.9.6 from https://files.pythonhosted.org/packages/f2/1e/703491e3de4fd3c249d1df055007c42352ebf22a0cefe6c666f99c880576/vermouth-0.9.6.tar.gz 2023-09-30T06:26:09,452 Removed vermouth==0.9.6 from https://files.pythonhosted.org/packages/f2/1e/703491e3de4fd3c249d1df055007c42352ebf22a0cefe6c666f99c880576/vermouth-0.9.6.tar.gz from build tracker '/tmp/pip-build-tracker-7k3vqme8' 2023-09-30T06:26:09,457 Created temporary directory: /tmp/pip-unpack-7woes5d_ 2023-09-30T06:26:09,458 Created temporary directory: /tmp/pip-unpack-m_v3vect 2023-09-30T06:26:09,466 Building wheels for collected packages: vermouth 2023-09-30T06:26:09,470 Created temporary directory: /tmp/pip-wheel-1v5yltqb 2023-09-30T06:26:09,471 Destination directory: /tmp/pip-wheel-1v5yltqb 2023-09-30T06:26:09,473 Building wheel for vermouth (pyproject.toml): started 2023-09-30T06:26:09,474 Running command Building wheel for vermouth (pyproject.toml) 2023-09-30T06:26:10,148 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-09-30T06:26:10,148 !! 2023-09-30T06:26:10,149 ******************************************************************************** 2023-09-30T06:26:10,149 Please avoid running ``setup.py`` and ``easy_install``. 2023-09-30T06:26:10,150 Instead, use pypa/build, pypa/installer or other 2023-09-30T06:26:10,150 standards-based tools. 2023-09-30T06:26:10,151 See https://github.com/pypa/setuptools/issues/917 for details. 2023-09-30T06:26:10,152 ******************************************************************************** 2023-09-30T06:26:10,153 !! 2023-09-30T06:26:10,153 easy_install.initialize_options(self) 2023-09-30T06:26:10,164 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:10,165 !! 2023-09-30T06:26:10,166 ******************************************************************************** 2023-09-30T06:26:10,166 Usage of dash-separated 'description-content-type' will not be supported in future 2023-09-30T06:26:10,167 versions. Please use the underscore name 'description_content_type' instead. 2023-09-30T06:26:10,168 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:10,169 calls to avoid build errors in the future. 2023-09-30T06:26:10,170 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:10,171 ******************************************************************************** 2023-09-30T06:26:10,172 !! 2023-09-30T06:26:10,172 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:10,177 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:10,177 !! 2023-09-30T06:26:10,178 ******************************************************************************** 2023-09-30T06:26:10,179 Usage of dash-separated 'setup-requires' will not be supported in future 2023-09-30T06:26:10,179 versions. Please use the underscore name 'setup_requires' instead. 2023-09-30T06:26:10,181 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:10,181 calls to avoid build errors in the future. 2023-09-30T06:26:10,182 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:10,183 ******************************************************************************** 2023-09-30T06:26:10,184 !! 2023-09-30T06:26:10,185 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:10,185 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:10,186 !! 2023-09-30T06:26:10,187 ******************************************************************************** 2023-09-30T06:26:10,188 Usage of dash-separated 'install-requires' will not be supported in future 2023-09-30T06:26:10,188 versions. Please use the underscore name 'install_requires' instead. 2023-09-30T06:26:10,189 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:10,189 calls to avoid build errors in the future. 2023-09-30T06:26:10,190 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:10,191 ******************************************************************************** 2023-09-30T06:26:10,191 !! 2023-09-30T06:26:10,192 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:10,192 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-30T06:26:10,193 !! 2023-09-30T06:26:10,193 ******************************************************************************** 2023-09-30T06:26:10,194 Usage of dash-separated 'zip-safe' will not be supported in future 2023-09-30T06:26:10,195 versions. Please use the underscore name 'zip_safe' instead. 2023-09-30T06:26:10,195 This deprecation is overdue, please update your project and remove deprecated 2023-09-30T06:26:10,196 calls to avoid build errors in the future. 2023-09-30T06:26:10,197 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-30T06:26:10,197 ******************************************************************************** 2023-09-30T06:26:10,198 !! 2023-09-30T06:26:10,199 opt = self.warn_dash_deprecation(opt, section) 2023-09-30T06:26:10,263 running bdist_wheel 2023-09-30T06:26:10,272 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-30T06:26:10,288 running build 2023-09-30T06:26:10,289 running build_py 2023-09-30T06:26:10,298 creating build 2023-09-30T06:26:10,298 creating build/lib 2023-09-30T06:26:10,299 creating build/lib/vermouth 2023-09-30T06:26:10,300 creating build/lib/vermouth/tests 2023-09-30T06:26:10,301 copying vermouth/tests/test_sort_molecule_atoms.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,303 copying vermouth/tests/test_mapping_integrative.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,306 copying vermouth/tests/helper_functions.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,308 copying vermouth/tests/test_native_forcefield.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,309 copying vermouth/tests/test_grappa.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,312 copying vermouth/tests/test_ptm_detection.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,314 copying vermouth/tests/__init__.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,316 copying vermouth/tests/test_file_writer.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,318 copying vermouth/tests/test_molecule.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,321 copying vermouth/tests/test_edge_tuning.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,323 copying vermouth/tests/test_itp_files.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,325 copying vermouth/tests/test_ffinput.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,328 copying vermouth/tests/molecule_strategies.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,330 copying vermouth/tests/test_ff_files.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,333 copying vermouth/tests/test_do_mapping.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,335 copying vermouth/tests/test_forcefield.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,337 copying vermouth/tests/test_logging.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,339 copying vermouth/tests/datafiles.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,341 copying vermouth/tests/test_version.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,343 copying vermouth/tests/test_utils.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,345 copying vermouth/tests/test_geometry.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,347 copying vermouth/tests/test_tune_cystein_bridges.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,349 copying vermouth/tests/test_graph_utils.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,351 copying vermouth/tests/test_add_molecule_edges.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,353 copying vermouth/tests/test_average_beads.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,355 copying vermouth/tests/test_make_bonds.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,357 copying vermouth/tests/test_go_vs_includes.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,358 copying vermouth/tests/test_map_parser.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,361 copying vermouth/tests/test_annotate_mut_mod.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,363 copying vermouth/tests/test_name_moltype.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,365 copying vermouth/tests/test_dssp.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,367 copying vermouth/tests/test_apply_rubber_band.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,370 copying vermouth/tests/test_links.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,372 copying vermouth/tests/test_map_input.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,374 copying vermouth/tests/test_repair_graph.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,376 copying vermouth/tests/test_ismags.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,379 copying vermouth/tests/test_selectors.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,381 copying vermouth/tests/test_section_parser.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,383 copying vermouth/tests/test_set_molecule_meta.py -> build/lib/vermouth/tests 2023-09-30T06:26:10,385 creating build/lib/vermouth/pdb 2023-09-30T06:26:10,386 copying vermouth/pdb/__init__.py -> build/lib/vermouth/pdb 2023-09-30T06:26:10,387 copying vermouth/pdb/pdb.py -> build/lib/vermouth/pdb 2023-09-30T06:26:10,390 creating build/lib/vermouth/gmx 2023-09-30T06:26:10,391 copying vermouth/gmx/gro.py -> build/lib/vermouth/gmx 2023-09-30T06:26:10,393 copying vermouth/gmx/__init__.py -> build/lib/vermouth/gmx 2023-09-30T06:26:10,395 copying vermouth/gmx/itp.py -> build/lib/vermouth/gmx 2023-09-30T06:26:10,397 copying vermouth/gmx/itp_read.py -> build/lib/vermouth/gmx 2023-09-30T06:26:10,400 copying vermouth/gmx/rtp.py -> build/lib/vermouth/gmx 2023-09-30T06:26:10,403 creating build/lib/vermouth/tests/integration_tests 2023-09-30T06:26:10,403 copying vermouth/tests/integration_tests/__init__.py -> build/lib/vermouth/tests/integration_tests 2023-09-30T06:26:10,405 copying vermouth/tests/integration_tests/test_integration.py -> build/lib/vermouth/tests/integration_tests 2023-09-30T06:26:10,408 creating build/lib/vermouth/processors 2023-09-30T06:26:10,409 copying vermouth/processors/tune_cystein_bridges.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,411 copying vermouth/processors/locate_charge_dummies.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,413 copying vermouth/processors/__init__.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,415 copying vermouth/processors/do_mapping.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,417 copying vermouth/processors/sort_molecule_atoms.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,419 copying vermouth/processors/merge_chains.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,421 copying vermouth/processors/set_molecule_meta.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,422 copying vermouth/processors/average_beads.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,424 copying vermouth/processors/make_bonds.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,427 copying vermouth/processors/rename_modified_residues.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,428 copying vermouth/processors/annotate_mut_mod.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,430 copying vermouth/processors/repair_graph.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,433 copying vermouth/processors/apply_posres.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,434 copying vermouth/processors/go_vs_includes.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,436 copying vermouth/processors/merge_all_molecules.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,438 copying vermouth/processors/quote.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,439 copying vermouth/processors/canonicalize_modifications.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,441 copying vermouth/processors/do_links.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,443 copying vermouth/processors/add_molecule_edges.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,445 copying vermouth/processors/attach_mass.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,447 copying vermouth/processors/gro_reader.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,448 copying vermouth/processors/name_moltype.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,450 copying vermouth/processors/processor.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,451 copying vermouth/processors/apply_rubber_band.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,454 copying vermouth/processors/pdb_reader.py -> build/lib/vermouth/processors 2023-09-30T06:26:10,456 copying vermouth/map_parser.py -> build/lib/vermouth 2023-09-30T06:26:10,459 copying vermouth/ismags.py -> build/lib/vermouth 2023-09-30T06:26:10,461 copying vermouth/__init__.py -> build/lib/vermouth 2023-09-30T06:26:10,463 copying vermouth/parser_utils.py -> build/lib/vermouth 2023-09-30T06:26:10,465 copying vermouth/utils.py -> build/lib/vermouth 2023-09-30T06:26:10,467 copying vermouth/log_helpers.py -> build/lib/vermouth 2023-09-30T06:26:10,469 copying vermouth/edge_tuning.py -> build/lib/vermouth 2023-09-30T06:26:10,471 copying vermouth/citation_parser.py -> build/lib/vermouth 2023-09-30T06:26:10,474 copying vermouth/map_input.py -> build/lib/vermouth 2023-09-30T06:26:10,476 copying vermouth/truncating_formatter.py -> build/lib/vermouth 2023-09-30T06:26:10,478 copying vermouth/forcefield.py -> build/lib/vermouth 2023-09-30T06:26:10,480 copying vermouth/system.py -> build/lib/vermouth 2023-09-30T06:26:10,482 copying vermouth/graph_utils.py -> build/lib/vermouth 2023-09-30T06:26:10,484 copying vermouth/molecule.py -> build/lib/vermouth 2023-09-30T06:26:10,487 copying vermouth/ffinput.py -> build/lib/vermouth 2023-09-30T06:26:10,490 copying vermouth/geometry.py -> build/lib/vermouth 2023-09-30T06:26:10,492 copying vermouth/file_writer.py -> build/lib/vermouth 2023-09-30T06:26:10,494 copying vermouth/selectors.py -> build/lib/vermouth 2023-09-30T06:26:10,496 creating build/lib/vermouth/dssp 2023-09-30T06:26:10,497 copying vermouth/dssp/__init__.py -> build/lib/vermouth/dssp 2023-09-30T06:26:10,499 copying vermouth/dssp/dssp.py -> build/lib/vermouth/dssp 2023-09-30T06:26:10,501 running egg_info 2023-09-30T06:26:10,518 writing vermouth.egg-info/PKG-INFO 2023-09-30T06:26:10,521 writing dependency_links to vermouth.egg-info/dependency_links.txt 2023-09-30T06:26:10,523 writing requirements to vermouth.egg-info/requires.txt 2023-09-30T06:26:10,524 writing top-level names to vermouth.egg-info/top_level.txt 2023-09-30T06:26:10,526 [pbr] Reusing existing SOURCES.txt 2023-09-30T06:26:10,540 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data' is absent from the `packages` configuration. 2023-09-30T06:26:10,541 !! 2023-09-30T06:26:10,542 ******************************************************************************** 2023-09-30T06:26:10,543 ############################ 2023-09-30T06:26:10,544 # Package would be ignored # 2023-09-30T06:26:10,544 ############################ 2023-09-30T06:26:10,545 Python recognizes 'vermouth.data' as an importable package[^1], 2023-09-30T06:26:10,545 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,546 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,546 package, please make sure that 'vermouth.data' is explicitly added 2023-09-30T06:26:10,547 to the `packages` configuration field. 2023-09-30T06:26:10,548 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,549 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,549 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,551 If you don't want 'vermouth.data' to be distributed and are 2023-09-30T06:26:10,551 already explicitly excluding 'vermouth.data' via 2023-09-30T06:26:10,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,553 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,553 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,557 even if it does not contain any `.py` files. 2023-09-30T06:26:10,558 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,558 directory, all directories are treated like packages. 2023-09-30T06:26:10,559 ******************************************************************************** 2023-09-30T06:26:10,560 !! 2023-09-30T06:26:10,560 check.warn(importable) 2023-09-30T06:26:10,561 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.amber' is absent from the `packages` configuration. 2023-09-30T06:26:10,561 !! 2023-09-30T06:26:10,563 ******************************************************************************** 2023-09-30T06:26:10,563 ############################ 2023-09-30T06:26:10,564 # Package would be ignored # 2023-09-30T06:26:10,564 ############################ 2023-09-30T06:26:10,565 Python recognizes 'vermouth.data.force_fields.amber' as an importable package[^1], 2023-09-30T06:26:10,565 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,567 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,567 package, please make sure that 'vermouth.data.force_fields.amber' is explicitly added 2023-09-30T06:26:10,568 to the `packages` configuration field. 2023-09-30T06:26:10,569 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,569 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,570 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,571 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,572 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,573 If you don't want 'vermouth.data.force_fields.amber' to be distributed and are 2023-09-30T06:26:10,573 already explicitly excluding 'vermouth.data.force_fields.amber' via 2023-09-30T06:26:10,574 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,575 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,576 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,578 even if it does not contain any `.py` files. 2023-09-30T06:26:10,578 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,578 directory, all directories are treated like packages. 2023-09-30T06:26:10,579 ******************************************************************************** 2023-09-30T06:26:10,579 !! 2023-09-30T06:26:10,580 check.warn(importable) 2023-09-30T06:26:10,580 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.charmm' is absent from the `packages` configuration. 2023-09-30T06:26:10,581 !! 2023-09-30T06:26:10,581 ******************************************************************************** 2023-09-30T06:26:10,582 ############################ 2023-09-30T06:26:10,582 # Package would be ignored # 2023-09-30T06:26:10,583 ############################ 2023-09-30T06:26:10,583 Python recognizes 'vermouth.data.force_fields.charmm' as an importable package[^1], 2023-09-30T06:26:10,584 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,585 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,586 package, please make sure that 'vermouth.data.force_fields.charmm' is explicitly added 2023-09-30T06:26:10,586 to the `packages` configuration field. 2023-09-30T06:26:10,587 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,588 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,589 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,591 If you don't want 'vermouth.data.force_fields.charmm' to be distributed and are 2023-09-30T06:26:10,592 already explicitly excluding 'vermouth.data.force_fields.charmm' via 2023-09-30T06:26:10,592 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,593 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,594 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,595 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,597 even if it does not contain any `.py` files. 2023-09-30T06:26:10,597 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,598 directory, all directories are treated like packages. 2023-09-30T06:26:10,598 ******************************************************************************** 2023-09-30T06:26:10,600 !! 2023-09-30T06:26:10,600 check.warn(importable) 2023-09-30T06:26:10,600 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.elnedyn21' is absent from the `packages` configuration. 2023-09-30T06:26:10,601 !! 2023-09-30T06:26:10,601 ******************************************************************************** 2023-09-30T06:26:10,602 ############################ 2023-09-30T06:26:10,602 # Package would be ignored # 2023-09-30T06:26:10,602 ############################ 2023-09-30T06:26:10,603 Python recognizes 'vermouth.data.force_fields.elnedyn21' as an importable package[^1], 2023-09-30T06:26:10,603 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,604 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,604 package, please make sure that 'vermouth.data.force_fields.elnedyn21' is explicitly added 2023-09-30T06:26:10,605 to the `packages` configuration field. 2023-09-30T06:26:10,606 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,606 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,607 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,608 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,609 If you don't want 'vermouth.data.force_fields.elnedyn21' to be distributed and are 2023-09-30T06:26:10,609 already explicitly excluding 'vermouth.data.force_fields.elnedyn21' via 2023-09-30T06:26:10,609 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,610 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,611 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,612 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,615 even if it does not contain any `.py` files. 2023-09-30T06:26:10,616 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,616 directory, all directories are treated like packages. 2023-09-30T06:26:10,616 ******************************************************************************** 2023-09-30T06:26:10,618 !! 2023-09-30T06:26:10,618 check.warn(importable) 2023-09-30T06:26:10,619 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.elnedyn22' is absent from the `packages` configuration. 2023-09-30T06:26:10,619 !! 2023-09-30T06:26:10,620 ******************************************************************************** 2023-09-30T06:26:10,621 ############################ 2023-09-30T06:26:10,621 # Package would be ignored # 2023-09-30T06:26:10,622 ############################ 2023-09-30T06:26:10,622 Python recognizes 'vermouth.data.force_fields.elnedyn22' as an importable package[^1], 2023-09-30T06:26:10,623 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,624 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,624 package, please make sure that 'vermouth.data.force_fields.elnedyn22' is explicitly added 2023-09-30T06:26:10,625 to the `packages` configuration field. 2023-09-30T06:26:10,626 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,627 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,628 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,630 If you don't want 'vermouth.data.force_fields.elnedyn22' to be distributed and are 2023-09-30T06:26:10,630 already explicitly excluding 'vermouth.data.force_fields.elnedyn22' via 2023-09-30T06:26:10,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,632 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,632 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,634 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,635 even if it does not contain any `.py` files. 2023-09-30T06:26:10,635 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,636 directory, all directories are treated like packages. 2023-09-30T06:26:10,636 ******************************************************************************** 2023-09-30T06:26:10,637 !! 2023-09-30T06:26:10,638 check.warn(importable) 2023-09-30T06:26:10,638 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.elnedyn22p' is absent from the `packages` configuration. 2023-09-30T06:26:10,639 !! 2023-09-30T06:26:10,640 ******************************************************************************** 2023-09-30T06:26:10,640 ############################ 2023-09-30T06:26:10,641 # Package would be ignored # 2023-09-30T06:26:10,641 ############################ 2023-09-30T06:26:10,642 Python recognizes 'vermouth.data.force_fields.elnedyn22p' as an importable package[^1], 2023-09-30T06:26:10,643 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,644 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,645 package, please make sure that 'vermouth.data.force_fields.elnedyn22p' is explicitly added 2023-09-30T06:26:10,645 to the `packages` configuration field. 2023-09-30T06:26:10,646 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,647 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,647 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,648 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,649 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,650 If you don't want 'vermouth.data.force_fields.elnedyn22p' to be distributed and are 2023-09-30T06:26:10,651 already explicitly excluding 'vermouth.data.force_fields.elnedyn22p' via 2023-09-30T06:26:10,651 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,652 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,652 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,653 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,654 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,655 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,655 even if it does not contain any `.py` files. 2023-09-30T06:26:10,656 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,656 directory, all directories are treated like packages. 2023-09-30T06:26:10,656 ******************************************************************************** 2023-09-30T06:26:10,657 !! 2023-09-30T06:26:10,658 check.warn(importable) 2023-09-30T06:26:10,658 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.gromos' is absent from the `packages` configuration. 2023-09-30T06:26:10,658 !! 2023-09-30T06:26:10,659 ******************************************************************************** 2023-09-30T06:26:10,659 ############################ 2023-09-30T06:26:10,660 # Package would be ignored # 2023-09-30T06:26:10,660 ############################ 2023-09-30T06:26:10,661 Python recognizes 'vermouth.data.force_fields.gromos' as an importable package[^1], 2023-09-30T06:26:10,661 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,662 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,662 package, please make sure that 'vermouth.data.force_fields.gromos' is explicitly added 2023-09-30T06:26:10,662 to the `packages` configuration field. 2023-09-30T06:26:10,663 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,664 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,665 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,666 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,668 If you don't want 'vermouth.data.force_fields.gromos' to be distributed and are 2023-09-30T06:26:10,668 already explicitly excluding 'vermouth.data.force_fields.gromos' via 2023-09-30T06:26:10,668 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,669 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,670 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,671 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,671 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,673 even if it does not contain any `.py` files. 2023-09-30T06:26:10,674 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,674 directory, all directories are treated like packages. 2023-09-30T06:26:10,675 ******************************************************************************** 2023-09-30T06:26:10,676 !! 2023-09-30T06:26:10,676 check.warn(importable) 2023-09-30T06:26:10,677 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.martini22' is absent from the `packages` configuration. 2023-09-30T06:26:10,677 !! 2023-09-30T06:26:10,678 ******************************************************************************** 2023-09-30T06:26:10,679 ############################ 2023-09-30T06:26:10,680 # Package would be ignored # 2023-09-30T06:26:10,680 ############################ 2023-09-30T06:26:10,681 Python recognizes 'vermouth.data.force_fields.martini22' as an importable package[^1], 2023-09-30T06:26:10,681 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,682 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,682 package, please make sure that 'vermouth.data.force_fields.martini22' is explicitly added 2023-09-30T06:26:10,682 to the `packages` configuration field. 2023-09-30T06:26:10,683 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,684 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,684 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,686 If you don't want 'vermouth.data.force_fields.martini22' to be distributed and are 2023-09-30T06:26:10,686 already explicitly excluding 'vermouth.data.force_fields.martini22' via 2023-09-30T06:26:10,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,687 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,687 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,688 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,689 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,691 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,691 even if it does not contain any `.py` files. 2023-09-30T06:26:10,692 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,692 directory, all directories are treated like packages. 2023-09-30T06:26:10,693 ******************************************************************************** 2023-09-30T06:26:10,694 !! 2023-09-30T06:26:10,694 check.warn(importable) 2023-09-30T06:26:10,695 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.martini22p' is absent from the `packages` configuration. 2023-09-30T06:26:10,696 !! 2023-09-30T06:26:10,697 ******************************************************************************** 2023-09-30T06:26:10,697 ############################ 2023-09-30T06:26:10,698 # Package would be ignored # 2023-09-30T06:26:10,698 ############################ 2023-09-30T06:26:10,698 Python recognizes 'vermouth.data.force_fields.martini22p' as an importable package[^1], 2023-09-30T06:26:10,699 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,700 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,700 package, please make sure that 'vermouth.data.force_fields.martini22p' is explicitly added 2023-09-30T06:26:10,701 to the `packages` configuration field. 2023-09-30T06:26:10,702 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,703 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,704 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,706 If you don't want 'vermouth.data.force_fields.martini22p' to be distributed and are 2023-09-30T06:26:10,707 already explicitly excluding 'vermouth.data.force_fields.martini22p' via 2023-09-30T06:26:10,707 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,708 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,709 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,709 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,711 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,711 even if it does not contain any `.py` files. 2023-09-30T06:26:10,712 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,712 directory, all directories are treated like packages. 2023-09-30T06:26:10,712 ******************************************************************************** 2023-09-30T06:26:10,713 !! 2023-09-30T06:26:10,714 check.warn(importable) 2023-09-30T06:26:10,714 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.martini3001' is absent from the `packages` configuration. 2023-09-30T06:26:10,715 !! 2023-09-30T06:26:10,715 ******************************************************************************** 2023-09-30T06:26:10,716 ############################ 2023-09-30T06:26:10,716 # Package would be ignored # 2023-09-30T06:26:10,717 ############################ 2023-09-30T06:26:10,717 Python recognizes 'vermouth.data.force_fields.martini3001' as an importable package[^1], 2023-09-30T06:26:10,718 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,719 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,720 package, please make sure that 'vermouth.data.force_fields.martini3001' is explicitly added 2023-09-30T06:26:10,720 to the `packages` configuration field. 2023-09-30T06:26:10,721 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,723 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,724 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,725 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,726 If you don't want 'vermouth.data.force_fields.martini3001' to be distributed and are 2023-09-30T06:26:10,726 already explicitly excluding 'vermouth.data.force_fields.martini3001' via 2023-09-30T06:26:10,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,728 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,729 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,733 even if it does not contain any `.py` files. 2023-09-30T06:26:10,733 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,734 directory, all directories are treated like packages. 2023-09-30T06:26:10,735 ******************************************************************************** 2023-09-30T06:26:10,736 !! 2023-09-30T06:26:10,736 check.warn(importable) 2023-09-30T06:26:10,736 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.martini30b32' is absent from the `packages` configuration. 2023-09-30T06:26:10,737 !! 2023-09-30T06:26:10,738 ******************************************************************************** 2023-09-30T06:26:10,738 ############################ 2023-09-30T06:26:10,738 # Package would be ignored # 2023-09-30T06:26:10,739 ############################ 2023-09-30T06:26:10,739 Python recognizes 'vermouth.data.force_fields.martini30b32' as an importable package[^1], 2023-09-30T06:26:10,740 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,740 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,741 package, please make sure that 'vermouth.data.force_fields.martini30b32' is explicitly added 2023-09-30T06:26:10,741 to the `packages` configuration field. 2023-09-30T06:26:10,742 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,743 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,744 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,746 If you don't want 'vermouth.data.force_fields.martini30b32' to be distributed and are 2023-09-30T06:26:10,746 already explicitly excluding 'vermouth.data.force_fields.martini30b32' via 2023-09-30T06:26:10,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,748 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,749 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,750 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,752 even if it does not contain any `.py` files. 2023-09-30T06:26:10,753 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,754 directory, all directories are treated like packages. 2023-09-30T06:26:10,754 ******************************************************************************** 2023-09-30T06:26:10,755 !! 2023-09-30T06:26:10,756 check.warn(importable) 2023-09-30T06:26:10,756 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.force_fields.martini30dev' is absent from the `packages` configuration. 2023-09-30T06:26:10,757 !! 2023-09-30T06:26:10,758 ******************************************************************************** 2023-09-30T06:26:10,758 ############################ 2023-09-30T06:26:10,759 # Package would be ignored # 2023-09-30T06:26:10,759 ############################ 2023-09-30T06:26:10,760 Python recognizes 'vermouth.data.force_fields.martini30dev' as an importable package[^1], 2023-09-30T06:26:10,760 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,761 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,762 package, please make sure that 'vermouth.data.force_fields.martini30dev' is explicitly added 2023-09-30T06:26:10,763 to the `packages` configuration field. 2023-09-30T06:26:10,764 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,765 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,765 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,766 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,767 If you don't want 'vermouth.data.force_fields.martini30dev' to be distributed and are 2023-09-30T06:26:10,767 already explicitly excluding 'vermouth.data.force_fields.martini30dev' via 2023-09-30T06:26:10,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,769 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,769 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,770 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,772 even if it does not contain any `.py` files. 2023-09-30T06:26:10,772 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,773 directory, all directories are treated like packages. 2023-09-30T06:26:10,773 ******************************************************************************** 2023-09-30T06:26:10,774 !! 2023-09-30T06:26:10,775 check.warn(importable) 2023-09-30T06:26:10,775 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings' is absent from the `packages` configuration. 2023-09-30T06:26:10,776 !! 2023-09-30T06:26:10,777 ******************************************************************************** 2023-09-30T06:26:10,778 ############################ 2023-09-30T06:26:10,778 # Package would be ignored # 2023-09-30T06:26:10,779 ############################ 2023-09-30T06:26:10,779 Python recognizes 'vermouth.data.mappings' as an importable package[^1], 2023-09-30T06:26:10,780 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,781 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,781 package, please make sure that 'vermouth.data.mappings' is explicitly added 2023-09-30T06:26:10,782 to the `packages` configuration field. 2023-09-30T06:26:10,783 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,784 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,784 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,785 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,786 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,787 If you don't want 'vermouth.data.mappings' to be distributed and are 2023-09-30T06:26:10,788 already explicitly excluding 'vermouth.data.mappings' via 2023-09-30T06:26:10,789 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,789 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,790 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,791 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,792 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,793 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,793 even if it does not contain any `.py` files. 2023-09-30T06:26:10,794 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,794 directory, all directories are treated like packages. 2023-09-30T06:26:10,795 ******************************************************************************** 2023-09-30T06:26:10,795 !! 2023-09-30T06:26:10,796 check.warn(importable) 2023-09-30T06:26:10,796 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings.elnedyn' is absent from the `packages` configuration. 2023-09-30T06:26:10,797 !! 2023-09-30T06:26:10,797 ******************************************************************************** 2023-09-30T06:26:10,798 ############################ 2023-09-30T06:26:10,798 # Package would be ignored # 2023-09-30T06:26:10,799 ############################ 2023-09-30T06:26:10,799 Python recognizes 'vermouth.data.mappings.elnedyn' as an importable package[^1], 2023-09-30T06:26:10,800 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,801 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,801 package, please make sure that 'vermouth.data.mappings.elnedyn' is explicitly added 2023-09-30T06:26:10,802 to the `packages` configuration field. 2023-09-30T06:26:10,803 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,803 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,804 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,805 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,807 If you don't want 'vermouth.data.mappings.elnedyn' to be distributed and are 2023-09-30T06:26:10,808 already explicitly excluding 'vermouth.data.mappings.elnedyn' via 2023-09-30T06:26:10,809 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,809 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,810 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,811 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,814 even if it does not contain any `.py` files. 2023-09-30T06:26:10,814 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,815 directory, all directories are treated like packages. 2023-09-30T06:26:10,815 ******************************************************************************** 2023-09-30T06:26:10,816 !! 2023-09-30T06:26:10,817 check.warn(importable) 2023-09-30T06:26:10,818 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings.elnedyn.elnedyn22p' is absent from the `packages` configuration. 2023-09-30T06:26:10,818 !! 2023-09-30T06:26:10,820 ******************************************************************************** 2023-09-30T06:26:10,820 ############################ 2023-09-30T06:26:10,820 # Package would be ignored # 2023-09-30T06:26:10,821 ############################ 2023-09-30T06:26:10,821 Python recognizes 'vermouth.data.mappings.elnedyn.elnedyn22p' as an importable package[^1], 2023-09-30T06:26:10,822 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,822 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,823 package, please make sure that 'vermouth.data.mappings.elnedyn.elnedyn22p' is explicitly added 2023-09-30T06:26:10,823 to the `packages` configuration field. 2023-09-30T06:26:10,824 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,824 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,825 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,826 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,826 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,827 If you don't want 'vermouth.data.mappings.elnedyn.elnedyn22p' to be distributed and are 2023-09-30T06:26:10,828 already explicitly excluding 'vermouth.data.mappings.elnedyn.elnedyn22p' via 2023-09-30T06:26:10,828 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,828 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,829 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,830 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,833 even if it does not contain any `.py` files. 2023-09-30T06:26:10,834 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,835 directory, all directories are treated like packages. 2023-09-30T06:26:10,835 ******************************************************************************** 2023-09-30T06:26:10,836 !! 2023-09-30T06:26:10,837 check.warn(importable) 2023-09-30T06:26:10,838 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings.elnedyn21' is absent from the `packages` configuration. 2023-09-30T06:26:10,838 !! 2023-09-30T06:26:10,839 ******************************************************************************** 2023-09-30T06:26:10,840 ############################ 2023-09-30T06:26:10,840 # Package would be ignored # 2023-09-30T06:26:10,841 ############################ 2023-09-30T06:26:10,841 Python recognizes 'vermouth.data.mappings.elnedyn21' as an importable package[^1], 2023-09-30T06:26:10,842 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,843 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,843 package, please make sure that 'vermouth.data.mappings.elnedyn21' is explicitly added 2023-09-30T06:26:10,844 to the `packages` configuration field. 2023-09-30T06:26:10,845 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,846 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,847 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,849 If you don't want 'vermouth.data.mappings.elnedyn21' to be distributed and are 2023-09-30T06:26:10,850 already explicitly excluding 'vermouth.data.mappings.elnedyn21' via 2023-09-30T06:26:10,850 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,851 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,851 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,852 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,853 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,855 even if it does not contain any `.py` files. 2023-09-30T06:26:10,855 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,855 directory, all directories are treated like packages. 2023-09-30T06:26:10,856 ******************************************************************************** 2023-09-30T06:26:10,857 !! 2023-09-30T06:26:10,857 check.warn(importable) 2023-09-30T06:26:10,857 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings.martini3001' is absent from the `packages` configuration. 2023-09-30T06:26:10,858 !! 2023-09-30T06:26:10,859 ******************************************************************************** 2023-09-30T06:26:10,859 ############################ 2023-09-30T06:26:10,860 # Package would be ignored # 2023-09-30T06:26:10,861 ############################ 2023-09-30T06:26:10,861 Python recognizes 'vermouth.data.mappings.martini3001' as an importable package[^1], 2023-09-30T06:26:10,862 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,863 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,863 package, please make sure that 'vermouth.data.mappings.martini3001' is explicitly added 2023-09-30T06:26:10,864 to the `packages` configuration field. 2023-09-30T06:26:10,865 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,865 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,866 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,867 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,868 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,869 If you don't want 'vermouth.data.mappings.martini3001' to be distributed and are 2023-09-30T06:26:10,869 already explicitly excluding 'vermouth.data.mappings.martini3001' via 2023-09-30T06:26:10,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,871 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,872 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,873 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,875 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,876 even if it does not contain any `.py` files. 2023-09-30T06:26:10,876 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,877 directory, all directories are treated like packages. 2023-09-30T06:26:10,877 ******************************************************************************** 2023-09-30T06:26:10,879 !! 2023-09-30T06:26:10,880 check.warn(importable) 2023-09-30T06:26:10,880 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.data.mappings.martini30b32' is absent from the `packages` configuration. 2023-09-30T06:26:10,881 !! 2023-09-30T06:26:10,885 ******************************************************************************** 2023-09-30T06:26:10,885 ############################ 2023-09-30T06:26:10,886 # Package would be ignored # 2023-09-30T06:26:10,886 ############################ 2023-09-30T06:26:10,887 Python recognizes 'vermouth.data.mappings.martini30b32' as an importable package[^1], 2023-09-30T06:26:10,887 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,888 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,889 package, please make sure that 'vermouth.data.mappings.martini30b32' is explicitly added 2023-09-30T06:26:10,892 to the `packages` configuration field. 2023-09-30T06:26:10,893 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,895 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,896 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,898 If you don't want 'vermouth.data.mappings.martini30b32' to be distributed and are 2023-09-30T06:26:10,900 already explicitly excluding 'vermouth.data.mappings.martini30b32' via 2023-09-30T06:26:10,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,907 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,907 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,908 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,909 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,911 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,912 even if it does not contain any `.py` files. 2023-09-30T06:26:10,913 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,913 directory, all directories are treated like packages. 2023-09-30T06:26:10,914 ******************************************************************************** 2023-09-30T06:26:10,915 !! 2023-09-30T06:26:10,915 check.warn(importable) 2023-09-30T06:26:10,916 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.graphing' is absent from the `packages` configuration. 2023-09-30T06:26:10,917 !! 2023-09-30T06:26:10,918 ******************************************************************************** 2023-09-30T06:26:10,918 ############################ 2023-09-30T06:26:10,919 # Package would be ignored # 2023-09-30T06:26:10,920 ############################ 2023-09-30T06:26:10,920 Python recognizes 'vermouth.graphing' as an importable package[^1], 2023-09-30T06:26:10,921 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,922 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,923 package, please make sure that 'vermouth.graphing' is explicitly added 2023-09-30T06:26:10,935 to the `packages` configuration field. 2023-09-30T06:26:10,959 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,960 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,960 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,962 If you don't want 'vermouth.graphing' to be distributed and are 2023-09-30T06:26:10,962 already explicitly excluding 'vermouth.graphing' via 2023-09-30T06:26:10,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,964 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,965 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,967 even if it does not contain any `.py` files. 2023-09-30T06:26:10,968 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,968 directory, all directories are treated like packages. 2023-09-30T06:26:10,969 ******************************************************************************** 2023-09-30T06:26:10,970 !! 2023-09-30T06:26:10,970 check.warn(importable) 2023-09-30T06:26:10,970 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data' is absent from the `packages` configuration. 2023-09-30T06:26:10,971 !! 2023-09-30T06:26:10,972 ******************************************************************************** 2023-09-30T06:26:10,972 ############################ 2023-09-30T06:26:10,973 # Package would be ignored # 2023-09-30T06:26:10,973 ############################ 2023-09-30T06:26:10,974 Python recognizes 'vermouth.tests.data' as an importable package[^1], 2023-09-30T06:26:10,974 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,975 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,976 package, please make sure that 'vermouth.tests.data' is explicitly added 2023-09-30T06:26:10,976 to the `packages` configuration field. 2023-09-30T06:26:10,977 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,978 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,979 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:10,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:10,981 If you don't want 'vermouth.tests.data' to be distributed and are 2023-09-30T06:26:10,982 already explicitly excluding 'vermouth.tests.data' via 2023-09-30T06:26:10,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:10,983 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:10,983 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:10,985 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:10,986 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:10,987 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:10,988 even if it does not contain any `.py` files. 2023-09-30T06:26:10,988 On the other hand, currently there is no concept of package data 2023-09-30T06:26:10,988 directory, all directories are treated like packages. 2023-09-30T06:26:10,989 ******************************************************************************** 2023-09-30T06:26:10,990 !! 2023-09-30T06:26:10,990 check.warn(importable) 2023-09-30T06:26:10,991 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data.dssp_tests' is absent from the `packages` configuration. 2023-09-30T06:26:10,991 !! 2023-09-30T06:26:10,992 ******************************************************************************** 2023-09-30T06:26:10,992 ############################ 2023-09-30T06:26:10,993 # Package would be ignored # 2023-09-30T06:26:10,993 ############################ 2023-09-30T06:26:10,994 Python recognizes 'vermouth.tests.data.dssp_tests' as an importable package[^1], 2023-09-30T06:26:10,994 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:10,995 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:10,996 package, please make sure that 'vermouth.tests.data.dssp_tests' is explicitly added 2023-09-30T06:26:10,996 to the `packages` configuration field. 2023-09-30T06:26:10,997 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:10,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:10,998 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:10,999 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,000 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,001 If you don't want 'vermouth.tests.data.dssp_tests' to be distributed and are 2023-09-30T06:26:11,001 already explicitly excluding 'vermouth.tests.data.dssp_tests' via 2023-09-30T06:26:11,002 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,003 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,004 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,007 even if it does not contain any `.py` files. 2023-09-30T06:26:11,007 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,008 directory, all directories are treated like packages. 2023-09-30T06:26:11,008 ******************************************************************************** 2023-09-30T06:26:11,009 !! 2023-09-30T06:26:11,010 check.warn(importable) 2023-09-30T06:26:11,010 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data.force_fields' is absent from the `packages` configuration. 2023-09-30T06:26:11,011 !! 2023-09-30T06:26:11,012 ******************************************************************************** 2023-09-30T06:26:11,012 ############################ 2023-09-30T06:26:11,013 # Package would be ignored # 2023-09-30T06:26:11,013 ############################ 2023-09-30T06:26:11,014 Python recognizes 'vermouth.tests.data.force_fields' as an importable package[^1], 2023-09-30T06:26:11,014 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,015 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,015 package, please make sure that 'vermouth.tests.data.force_fields' is explicitly added 2023-09-30T06:26:11,016 to the `packages` configuration field. 2023-09-30T06:26:11,017 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,017 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,018 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,020 If you don't want 'vermouth.tests.data.force_fields' to be distributed and are 2023-09-30T06:26:11,020 already explicitly excluding 'vermouth.tests.data.force_fields' via 2023-09-30T06:26:11,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,022 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,022 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,025 even if it does not contain any `.py` files. 2023-09-30T06:26:11,026 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,026 directory, all directories are treated like packages. 2023-09-30T06:26:11,027 ******************************************************************************** 2023-09-30T06:26:11,028 !! 2023-09-30T06:26:11,028 check.warn(importable) 2023-09-30T06:26:11,029 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data.force_fields.pepplane' is absent from the `packages` configuration. 2023-09-30T06:26:11,029 !! 2023-09-30T06:26:11,030 ******************************************************************************** 2023-09-30T06:26:11,031 ############################ 2023-09-30T06:26:11,032 # Package would be ignored # 2023-09-30T06:26:11,032 ############################ 2023-09-30T06:26:11,033 Python recognizes 'vermouth.tests.data.force_fields.pepplane' as an importable package[^1], 2023-09-30T06:26:11,033 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,034 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,034 package, please make sure that 'vermouth.tests.data.force_fields.pepplane' is explicitly added 2023-09-30T06:26:11,035 to the `packages` configuration field. 2023-09-30T06:26:11,036 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,037 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,038 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,039 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,040 If you don't want 'vermouth.tests.data.force_fields.pepplane' to be distributed and are 2023-09-30T06:26:11,041 already explicitly excluding 'vermouth.tests.data.force_fields.pepplane' via 2023-09-30T06:26:11,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,042 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,043 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,044 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,045 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,046 even if it does not contain any `.py` files. 2023-09-30T06:26:11,046 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,046 directory, all directories are treated like packages. 2023-09-30T06:26:11,047 ******************************************************************************** 2023-09-30T06:26:11,048 !! 2023-09-30T06:26:11,048 check.warn(importable) 2023-09-30T06:26:11,049 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data.integration_tests' is absent from the `packages` configuration. 2023-09-30T06:26:11,049 !! 2023-09-30T06:26:11,050 ******************************************************************************** 2023-09-30T06:26:11,050 ############################ 2023-09-30T06:26:11,051 # Package would be ignored # 2023-09-30T06:26:11,051 ############################ 2023-09-30T06:26:11,052 Python recognizes 'vermouth.tests.data.integration_tests' as an importable package[^1], 2023-09-30T06:26:11,052 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,053 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,054 package, please make sure that 'vermouth.tests.data.integration_tests' is explicitly added 2023-09-30T06:26:11,054 to the `packages` configuration field. 2023-09-30T06:26:11,055 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,056 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,057 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,058 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,059 If you don't want 'vermouth.tests.data.integration_tests' to be distributed and are 2023-09-30T06:26:11,059 already explicitly excluding 'vermouth.tests.data.integration_tests' via 2023-09-30T06:26:11,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,061 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,062 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,065 even if it does not contain any `.py` files. 2023-09-30T06:26:11,065 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,066 directory, all directories are treated like packages. 2023-09-30T06:26:11,067 ******************************************************************************** 2023-09-30T06:26:11,068 !! 2023-09-30T06:26:11,068 check.warn(importable) 2023-09-30T06:26:11,069 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.data.mappings' is absent from the `packages` configuration. 2023-09-30T06:26:11,069 !! 2023-09-30T06:26:11,070 ******************************************************************************** 2023-09-30T06:26:11,070 ############################ 2023-09-30T06:26:11,071 # Package would be ignored # 2023-09-30T06:26:11,071 ############################ 2023-09-30T06:26:11,072 Python recognizes 'vermouth.tests.data.mappings' as an importable package[^1], 2023-09-30T06:26:11,072 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,073 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,073 package, please make sure that 'vermouth.tests.data.mappings' is explicitly added 2023-09-30T06:26:11,074 to the `packages` configuration field. 2023-09-30T06:26:11,075 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,075 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,075 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,076 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,077 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,078 If you don't want 'vermouth.tests.data.mappings' to be distributed and are 2023-09-30T06:26:11,079 already explicitly excluding 'vermouth.tests.data.mappings' via 2023-09-30T06:26:11,079 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,080 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,080 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,081 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,082 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,083 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,084 even if it does not contain any `.py` files. 2023-09-30T06:26:11,085 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,085 directory, all directories are treated like packages. 2023-09-30T06:26:11,085 ******************************************************************************** 2023-09-30T06:26:11,086 !! 2023-09-30T06:26:11,087 check.warn(importable) 2023-09-30T06:26:11,088 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.gmx' is absent from the `packages` configuration. 2023-09-30T06:26:11,088 !! 2023-09-30T06:26:11,089 ******************************************************************************** 2023-09-30T06:26:11,090 ############################ 2023-09-30T06:26:11,090 # Package would be ignored # 2023-09-30T06:26:11,091 ############################ 2023-09-30T06:26:11,091 Python recognizes 'vermouth.tests.gmx' as an importable package[^1], 2023-09-30T06:26:11,092 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,093 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,093 package, please make sure that 'vermouth.tests.gmx' is explicitly added 2023-09-30T06:26:11,094 to the `packages` configuration field. 2023-09-30T06:26:11,095 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,095 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,096 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,096 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,097 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,098 If you don't want 'vermouth.tests.gmx' to be distributed and are 2023-09-30T06:26:11,099 already explicitly excluding 'vermouth.tests.gmx' via 2023-09-30T06:26:11,099 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,099 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,100 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,101 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,101 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,103 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,103 even if it does not contain any `.py` files. 2023-09-30T06:26:11,104 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,104 directory, all directories are treated like packages. 2023-09-30T06:26:11,105 ******************************************************************************** 2023-09-30T06:26:11,105 !! 2023-09-30T06:26:11,106 check.warn(importable) 2023-09-30T06:26:11,106 /tmp/pip-build-env-_ickv_yg/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'vermouth.tests.pdb' is absent from the `packages` configuration. 2023-09-30T06:26:11,107 !! 2023-09-30T06:26:11,108 ******************************************************************************** 2023-09-30T06:26:11,108 ############################ 2023-09-30T06:26:11,109 # Package would be ignored # 2023-09-30T06:26:11,109 ############################ 2023-09-30T06:26:11,110 Python recognizes 'vermouth.tests.pdb' as an importable package[^1], 2023-09-30T06:26:11,110 but it is absent from setuptools' `packages` configuration. 2023-09-30T06:26:11,111 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-30T06:26:11,112 package, please make sure that 'vermouth.tests.pdb' is explicitly added 2023-09-30T06:26:11,112 to the `packages` configuration field. 2023-09-30T06:26:11,113 Alternatively, you can also rely on setuptools' discovery methods 2023-09-30T06:26:11,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-30T06:26:11,114 instead of `find_packages(...)`/`find:`). 2023-09-30T06:26:11,115 You can read more about "package discovery" on setuptools documentation page: 2023-09-30T06:26:11,116 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-30T06:26:11,117 If you don't want 'vermouth.tests.pdb' to be distributed and are 2023-09-30T06:26:11,118 already explicitly excluding 'vermouth.tests.pdb' via 2023-09-30T06:26:11,118 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-30T06:26:11,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-30T06:26:11,119 combination with a more fine grained `package-data` configuration. 2023-09-30T06:26:11,120 You can read more about "package data files" on setuptools documentation page: 2023-09-30T06:26:11,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-30T06:26:11,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-30T06:26:11,123 even if it does not contain any `.py` files. 2023-09-30T06:26:11,124 On the other hand, currently there is no concept of package data 2023-09-30T06:26:11,124 directory, all directories are treated like packages. 2023-09-30T06:26:11,125 ******************************************************************************** 2023-09-30T06:26:11,126 !! 2023-09-30T06:26:11,126 check.warn(importable) 2023-09-30T06:26:11,127 creating build/lib/vermouth/tests/data 2023-09-30T06:26:11,128 copying vermouth/tests/data/1bta.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,128 copying vermouth/tests/data/1bta_mutated.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,129 copying vermouth/tests/data/2QWO.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,129 copying vermouth/tests/data/2dn2.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,130 copying vermouth/tests/data/6E8W.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,130 copying vermouth/tests/data/ala5.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,131 copying vermouth/tests/data/ala5_cg.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,131 copying vermouth/tests/data/dna-short.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,132 copying vermouth/tests/data/heme.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,133 copying vermouth/tests/data/tri_alanine.pdb -> build/lib/vermouth/tests/data 2023-09-30T06:26:11,133 creating build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,134 copying vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,134 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,135 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,135 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,136 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,136 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,137 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-09-30T06:26:11,137 creating build/lib/vermouth/tests/data/force_fields 2023-09-30T06:26:11,138 creating build/lib/vermouth/tests/data/force_fields/martini-test 2023-09-30T06:26:11,138 copying vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/lib/vermouth/tests/data/force_fields/martini-test 2023-09-30T06:26:11,139 creating build/lib/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:11,139 copying vermouth/tests/data/force_fields/pepplane/ala.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:11,140 copying vermouth/tests/data/force_fields/pepplane/general.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:11,141 copying vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:11,141 creating build/lib/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:11,142 copying vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/lib/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:11,142 copying vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/lib/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:11,143 creating build/lib/vermouth/tests/data/integration_tests 2023-09-30T06:26:11,144 creating build/lib/vermouth/tests/data/integration_tests/tier-0 2023-09-30T06:26:11,144 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:11,145 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:11,145 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:11,146 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,146 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,147 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,147 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,148 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,149 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:11,149 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:11,150 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:11,150 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:11,150 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,151 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,151 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,152 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,152 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,153 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,154 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,154 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:11,155 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:11,156 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:11,157 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:11,158 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,158 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,159 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,159 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,160 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,160 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,161 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,162 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:11,162 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:11,163 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:11,163 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:11,164 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,165 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,165 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,166 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,167 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,170 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,171 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,172 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:11,172 creating build/lib/vermouth/tests/data/integration_tests/tier-1 2023-09-30T06:26:11,173 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:11,174 copying vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:11,175 copying vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:11,175 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:11,176 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:11,176 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:11,179 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,179 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,180 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,180 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,181 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,181 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,182 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,182 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:11,183 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,183 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,184 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,184 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,187 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,189 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,191 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,197 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:11,200 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:11,201 copying vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:11,205 copying vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:11,207 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,208 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,211 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,213 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,216 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,218 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,220 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,222 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,226 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,228 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:11,230 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:11,231 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:11,237 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:11,239 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,240 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,243 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,245 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,247 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,249 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,251 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,256 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:11,259 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:11,260 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:11,262 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:11,266 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,267 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,270 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,271 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,274 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,276 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,278 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,281 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:11,283 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:11,284 copying vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:11,286 copying vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:11,289 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,290 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,293 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,295 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,298 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,300 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,301 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,304 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:11,307 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:11,308 copying vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:11,310 copying vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:11,313 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,314 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,317 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,320 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,322 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,324 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,327 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,329 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:11,331 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:11,332 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:11,334 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:11,338 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,339 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,342 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,345 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,347 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,349 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,352 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,355 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,358 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:11,360 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,361 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,363 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,368 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,370 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,373 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,377 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:11,379 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,380 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,383 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,386 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,387 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,389 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,392 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,394 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,397 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:11,399 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:11,400 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:11,402 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:11,407 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,407 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,410 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,412 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,415 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,417 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,419 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,422 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,425 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:11,428 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:11,429 copying vermouth/tests/data/integration_tests/tier-1/villin/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:11,431 copying vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:11,434 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,435 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,438 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,439 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,441 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,444 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,446 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:11,447 creating build/lib/vermouth/tests/data/mappings 2023-09-30T06:26:11,448 creating build/lib/vermouth/tests/data/mappings/universal-test 2023-09-30T06:26:11,449 creating build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2023-09-30T06:26:11,450 copying vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2023-09-30T06:26:11,452 creating build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:11,453 copying vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:11,455 copying vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:11,457 creating build/lib/vermouth/tests/gmx 2023-09-30T06:26:11,458 copying vermouth/tests/gmx/test_gro.py -> build/lib/vermouth/tests/gmx 2023-09-30T06:26:11,461 copying vermouth/tests/gmx/test_itp.py -> build/lib/vermouth/tests/gmx 2023-09-30T06:26:11,463 creating build/lib/vermouth/tests/pdb 2023-09-30T06:26:11,464 copying vermouth/tests/pdb/test_read_pdb.py -> build/lib/vermouth/tests/pdb 2023-09-30T06:26:11,467 copying vermouth/tests/pdb/test_write_pdb.py -> build/lib/vermouth/tests/pdb 2023-09-30T06:26:11,469 creating build/lib/vermouth/data 2023-09-30T06:26:11,470 copying vermouth/data/quotes.txt -> build/lib/vermouth/data 2023-09-30T06:26:11,473 creating build/lib/vermouth/data/force_fields 2023-09-30T06:26:11,473 creating build/lib/vermouth/data/force_fields/amber 2023-09-30T06:26:11,474 copying vermouth/data/force_fields/amber/aminoacids.rtp -> build/lib/vermouth/data/force_fields/amber 2023-09-30T06:26:11,477 copying vermouth/data/force_fields/amber/modifications.ff -> build/lib/vermouth/data/force_fields/amber 2023-09-30T06:26:11,480 creating build/lib/vermouth/data/force_fields/charmm 2023-09-30T06:26:11,481 copying vermouth/data/force_fields/charmm/aminoacids.rtp -> build/lib/vermouth/data/force_fields/charmm 2023-09-30T06:26:11,484 copying vermouth/data/force_fields/charmm/modifications.ff -> build/lib/vermouth/data/force_fields/charmm 2023-09-30T06:26:11,486 copying vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/lib/vermouth/data/force_fields/charmm 2023-09-30T06:26:11,524 creating build/lib/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:11,525 copying vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:11,528 copying vermouth/data/force_fields/elnedyn21/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:11,531 copying vermouth/data/force_fields/elnedyn21/general.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:11,533 copying vermouth/data/force_fields/elnedyn21/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:11,536 creating build/lib/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:11,537 copying vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:11,540 copying vermouth/data/force_fields/elnedyn22/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:11,543 copying vermouth/data/force_fields/elnedyn22/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:11,546 copying vermouth/data/force_fields/elnedyn22/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:11,548 creating build/lib/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:11,549 copying vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:11,553 copying vermouth/data/force_fields/elnedyn22p/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:11,556 copying vermouth/data/force_fields/elnedyn22p/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:11,558 copying vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:11,561 creating build/lib/vermouth/data/force_fields/gromos 2023-09-30T06:26:11,562 copying vermouth/data/force_fields/gromos/aminoacids.rtp -> build/lib/vermouth/data/force_fields/gromos 2023-09-30T06:26:11,567 copying vermouth/data/force_fields/gromos/cofactors.ff -> build/lib/vermouth/data/force_fields/gromos 2023-09-30T06:26:11,570 copying vermouth/data/force_fields/gromos/modifications.ff -> build/lib/vermouth/data/force_fields/gromos 2023-09-30T06:26:11,573 creating build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,574 copying vermouth/data/force_fields/martini22/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,578 copying vermouth/data/force_fields/martini22/citations.bib -> build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,581 copying vermouth/data/force_fields/martini22/general.ff -> build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,584 copying vermouth/data/force_fields/martini22/modifications.ff -> build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,586 copying vermouth/data/force_fields/martini22/nucleotides.ff -> build/lib/vermouth/data/force_fields/martini22 2023-09-30T06:26:11,589 creating build/lib/vermouth/data/force_fields/martini22p 2023-09-30T06:26:11,590 copying vermouth/data/force_fields/martini22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-09-30T06:26:11,594 copying vermouth/data/force_fields/martini22p/citations.bib -> build/lib/vermouth/data/force_fields/martini22p 2023-09-30T06:26:11,597 copying vermouth/data/force_fields/martini22p/general.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-09-30T06:26:11,599 copying vermouth/data/force_fields/martini22p/modifications.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-09-30T06:26:11,602 creating build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,603 copying vermouth/data/force_fields/martini3001/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,608 copying vermouth/data/force_fields/martini3001/citations.bib -> build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,610 copying vermouth/data/force_fields/martini3001/general.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,613 copying vermouth/data/force_fields/martini3001/modifications.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,616 copying vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-09-30T06:26:11,619 creating build/lib/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:11,620 copying vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:11,624 copying vermouth/data/force_fields/martini30b32/citations.bib -> build/lib/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:11,626 copying vermouth/data/force_fields/martini30b32/modifications.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:11,628 copying vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:11,629 creating build/lib/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:11,630 copying vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:11,633 copying vermouth/data/force_fields/martini30dev/citations.bib -> build/lib/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:11,635 copying vermouth/data/force_fields/martini30dev/modifications.ff -> build/lib/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:11,637 creating build/lib/vermouth/data/mappings 2023-09-30T06:26:11,638 copying vermouth/data/mappings/ala.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,640 copying vermouth/data/mappings/ala.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,642 copying vermouth/data/mappings/arg.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,645 copying vermouth/data/mappings/arg.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,647 copying vermouth/data/mappings/arg.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,649 copying vermouth/data/mappings/asn.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,651 copying vermouth/data/mappings/asn.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,653 copying vermouth/data/mappings/asn.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,655 copying vermouth/data/mappings/asp.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,657 copying vermouth/data/mappings/asp.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,659 copying vermouth/data/mappings/asp.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,661 copying vermouth/data/mappings/asp0.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,663 copying vermouth/data/mappings/chol.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,665 copying vermouth/data/mappings/cys.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,667 copying vermouth/data/mappings/cys.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,669 copying vermouth/data/mappings/dmpc.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,671 copying vermouth/data/mappings/dopc.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,673 copying vermouth/data/mappings/dppc.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,676 copying vermouth/data/mappings/dppg.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,678 copying vermouth/data/mappings/fmn.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,680 copying vermouth/data/mappings/gln.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,682 copying vermouth/data/mappings/gln.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,684 copying vermouth/data/mappings/gln.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,686 copying vermouth/data/mappings/glu.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,688 copying vermouth/data/mappings/glu.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,690 copying vermouth/data/mappings/glu.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,692 copying vermouth/data/mappings/glu0.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,694 copying vermouth/data/mappings/gly.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,697 copying vermouth/data/mappings/gly.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,699 copying vermouth/data/mappings/his.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,701 copying vermouth/data/mappings/his.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,703 copying vermouth/data/mappings/hsd.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,706 copying vermouth/data/mappings/hse.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,708 copying vermouth/data/mappings/hsp.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,710 copying vermouth/data/mappings/ile.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,713 copying vermouth/data/mappings/ile.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,715 copying vermouth/data/mappings/leu.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,718 copying vermouth/data/mappings/leu.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,720 copying vermouth/data/mappings/lys.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,722 copying vermouth/data/mappings/lys.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,725 copying vermouth/data/mappings/lys.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,727 copying vermouth/data/mappings/met.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,729 copying vermouth/data/mappings/met.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,732 copying vermouth/data/mappings/modifications.gromos.mapping -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,734 copying vermouth/data/mappings/modifications.mapping -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,737 copying vermouth/data/mappings/nad.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,739 copying vermouth/data/mappings/phe.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,741 copying vermouth/data/mappings/phe.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,743 copying vermouth/data/mappings/popc.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,745 copying vermouth/data/mappings/pope.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,747 copying vermouth/data/mappings/popg.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,749 copying vermouth/data/mappings/pops.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,752 copying vermouth/data/mappings/pro.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,753 copying vermouth/data/mappings/pro.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,755 copying vermouth/data/mappings/ser.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,757 copying vermouth/data/mappings/ser.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,759 copying vermouth/data/mappings/ser.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,761 copying vermouth/data/mappings/thr.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,763 copying vermouth/data/mappings/thr.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,765 copying vermouth/data/mappings/thr.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,767 copying vermouth/data/mappings/tpp.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,769 copying vermouth/data/mappings/trp.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,771 copying vermouth/data/mappings/trp.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,773 copying vermouth/data/mappings/tyr.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,775 copying vermouth/data/mappings/tyr.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,777 copying vermouth/data/mappings/val.charmm36.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,779 copying vermouth/data/mappings/val.gromos.map -> build/lib/vermouth/data/mappings 2023-09-30T06:26:11,781 creating build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,782 copying vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,784 copying vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,786 copying vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,788 copying vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,790 copying vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,792 copying vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,794 copying vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,796 copying vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,798 copying vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,801 copying vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,803 copying vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,805 copying vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,807 copying vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,809 copying vermouth/data/mappings/elnedyn/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,811 copying vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,813 copying vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,815 copying vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,817 copying vermouth/data/mappings/elnedyn/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,818 copying vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,820 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,823 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,826 copying vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,828 copying vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,830 copying vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,832 copying vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,835 copying vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,837 copying vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,839 copying vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,841 copying vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,843 copying vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,845 copying vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,846 copying vermouth/data/mappings/elnedyn/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-09-30T06:26:11,848 creating build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,849 copying vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,851 copying vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,853 copying vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,855 copying vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,857 copying vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,859 copying vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,861 copying vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,863 copying vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:11,865 creating build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,866 copying vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,868 copying vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,870 copying vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,872 copying vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,874 copying vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,876 copying vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,878 copying vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,880 copying vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,882 copying vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,884 copying vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,886 copying vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,888 copying vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,890 copying vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,892 copying vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,894 copying vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,896 copying vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,898 copying vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,900 copying vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,902 copying vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,904 copying vermouth/data/mappings/elnedyn21/modifications.mapping -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,906 copying vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,908 copying vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,910 copying vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,912 copying vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,914 copying vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,916 copying vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,918 copying vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,920 copying vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,922 copying vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:11,924 creating build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,925 copying vermouth/data/mappings/martini3001/ala.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,927 copying vermouth/data/mappings/martini3001/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,929 copying vermouth/data/mappings/martini3001/antr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,931 copying vermouth/data/mappings/martini3001/arg.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,933 copying vermouth/data/mappings/martini3001/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,935 copying vermouth/data/mappings/martini3001/ash.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,937 copying vermouth/data/mappings/martini3001/asn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,939 copying vermouth/data/mappings/martini3001/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,941 copying vermouth/data/mappings/martini3001/asp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,943 copying vermouth/data/mappings/martini3001/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,945 copying vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,947 copying vermouth/data/mappings/martini3001/bald.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,949 copying vermouth/data/mappings/martini3001/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,951 copying vermouth/data/mappings/martini3001/c3.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,953 copying vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,955 copying vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,957 copying vermouth/data/mappings/martini3001/cume.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,959 copying vermouth/data/mappings/martini3001/cys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,961 copying vermouth/data/mappings/martini3001/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,963 copying vermouth/data/mappings/martini3001/diol.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,964 copying vermouth/data/mappings/martini3001/diox.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,966 copying vermouth/data/mappings/martini3001/dman.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,968 copying vermouth/data/mappings/martini3001/eben.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,970 copying vermouth/data/mappings/martini3001/fura.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,972 copying vermouth/data/mappings/martini3001/glh.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,974 copying vermouth/data/mappings/martini3001/gln.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,976 copying vermouth/data/mappings/martini3001/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,977 copying vermouth/data/mappings/martini3001/glu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,979 copying vermouth/data/mappings/martini3001/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,981 copying vermouth/data/mappings/martini3001/glup.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,983 copying vermouth/data/mappings/martini3001/gly.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,989 copying vermouth/data/mappings/martini3001/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,991 copying vermouth/data/mappings/martini3001/hid.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,993 copying vermouth/data/mappings/martini3001/hie.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,994 copying vermouth/data/mappings/martini3001/hip.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,996 copying vermouth/data/mappings/martini3001/his.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:11,998 copying vermouth/data/mappings/martini3001/his.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,000 copying vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,002 copying vermouth/data/mappings/martini3001/hse.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,004 copying vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,006 copying vermouth/data/mappings/martini3001/ile.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,008 copying vermouth/data/mappings/martini3001/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,010 copying vermouth/data/mappings/martini3001/imia.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,012 copying vermouth/data/mappings/martini3001/inda.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,014 copying vermouth/data/mappings/martini3001/indo.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,016 copying vermouth/data/mappings/martini3001/leu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,018 copying vermouth/data/mappings/martini3001/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,020 copying vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,022 copying vermouth/data/mappings/martini3001/lyn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,023 copying vermouth/data/mappings/martini3001/lys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,025 copying vermouth/data/mappings/martini3001/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,027 copying vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,029 copying vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,031 copying vermouth/data/mappings/martini3001/meob.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,032 copying vermouth/data/mappings/martini3001/met.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,035 copying vermouth/data/mappings/martini3001/met.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,037 copying vermouth/data/mappings/martini3001/mind.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,039 copying vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,041 copying vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,043 copying vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,045 copying vermouth/data/mappings/martini3001/naft.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,047 copying vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,049 copying vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,051 copying vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,053 copying vermouth/data/mappings/martini3001/phe.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,055 copying vermouth/data/mappings/martini3001/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,057 copying vermouth/data/mappings/martini3001/phen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,059 copying vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,061 copying vermouth/data/mappings/martini3001/prld.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,063 copying vermouth/data/mappings/martini3001/pro.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,065 copying vermouth/data/mappings/martini3001/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,067 copying vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,069 copying vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,071 copying vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,073 copying vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,075 copying vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,077 copying vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,079 copying vermouth/data/mappings/martini3001/ser.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,081 copying vermouth/data/mappings/martini3001/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,083 copying vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,084 copying vermouth/data/mappings/martini3001/styr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,086 copying vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,088 copying vermouth/data/mappings/martini3001/thf.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,090 copying vermouth/data/mappings/martini3001/thip.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,092 copying vermouth/data/mappings/martini3001/thp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,094 copying vermouth/data/mappings/martini3001/thr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,096 copying vermouth/data/mappings/martini3001/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,098 copying vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,100 copying vermouth/data/mappings/martini3001/trp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,102 copying vermouth/data/mappings/martini3001/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,104 copying vermouth/data/mappings/martini3001/tyr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,106 copying vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,108 copying vermouth/data/mappings/martini3001/val.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,110 copying vermouth/data/mappings/martini3001/val.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,112 copying vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,114 copying vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,116 copying vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-09-30T06:26:12,118 creating build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,119 copying vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,122 copying vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,124 copying vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,126 copying vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,128 copying vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,130 copying vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,132 copying vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,135 copying vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,137 copying vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,139 copying vermouth/data/mappings/martini30b32/his.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,141 copying vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,143 copying vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,145 copying vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,147 copying vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,149 copying vermouth/data/mappings/martini30b32/met.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,151 copying vermouth/data/mappings/martini30b32/modifications.mapping -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,153 copying vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,154 copying vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,156 copying vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,158 copying vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,160 copying vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,162 copying vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,164 copying vermouth/data/mappings/martini30b32/val.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-09-30T06:26:12,166 creating build/lib/vermouth/graphing 2023-09-30T06:26:12,166 copying vermouth/graphing/grappa.py -> build/lib/vermouth/graphing 2023-09-30T06:26:12,324 running build_scripts 2023-09-30T06:26:12,324 creating build/scripts-3.11 2023-09-30T06:26:12,326 copying and adjusting bin/martinize2 -> build/scripts-3.11 2023-09-30T06:26:12,330 changing mode of build/scripts-3.11/martinize2 from 644 to 755 2023-09-30T06:26:12,330 installing to build/bdist.linux-armv7l/wheel 2023-09-30T06:26:12,331 running install 2023-09-30T06:26:12,366 [pbr] Generating AUTHORS 2023-09-30T06:26:12,373 [pbr] AUTHORS complete (0.0s) 2023-09-30T06:26:12,373 running install_lib 2023-09-30T06:26:12,380 creating build/bdist.linux-armv7l 2023-09-30T06:26:12,381 creating build/bdist.linux-armv7l/wheel 2023-09-30T06:26:12,383 creating build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,384 copying build/lib/vermouth/map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,387 copying build/lib/vermouth/ismags.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,390 copying build/lib/vermouth/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,392 copying build/lib/vermouth/parser_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,395 copying build/lib/vermouth/utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,397 copying build/lib/vermouth/log_helpers.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,399 copying build/lib/vermouth/edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,401 copying build/lib/vermouth/citation_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,404 copying build/lib/vermouth/map_input.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,406 copying build/lib/vermouth/truncating_formatter.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,409 copying build/lib/vermouth/forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,411 copying build/lib/vermouth/system.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,413 creating build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-09-30T06:26:12,414 copying build/lib/vermouth/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-09-30T06:26:12,416 copying build/lib/vermouth/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-09-30T06:26:12,419 creating build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,420 copying build/lib/vermouth/processors/tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,422 copying build/lib/vermouth/processors/locate_charge_dummies.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,424 copying build/lib/vermouth/processors/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,426 copying build/lib/vermouth/processors/do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,428 copying build/lib/vermouth/processors/sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,430 copying build/lib/vermouth/processors/merge_chains.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,432 copying build/lib/vermouth/processors/set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,434 copying build/lib/vermouth/processors/average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,436 copying build/lib/vermouth/processors/make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,438 copying build/lib/vermouth/processors/rename_modified_residues.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,440 copying build/lib/vermouth/processors/annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,442 copying build/lib/vermouth/processors/repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,445 copying build/lib/vermouth/processors/apply_posres.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,446 copying build/lib/vermouth/processors/go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,449 copying build/lib/vermouth/processors/merge_all_molecules.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,450 copying build/lib/vermouth/processors/quote.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,452 copying build/lib/vermouth/processors/canonicalize_modifications.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,455 copying build/lib/vermouth/processors/do_links.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,457 copying build/lib/vermouth/processors/add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,459 copying build/lib/vermouth/processors/attach_mass.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,460 copying build/lib/vermouth/processors/gro_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,462 copying build/lib/vermouth/processors/name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,464 copying build/lib/vermouth/processors/processor.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,466 copying build/lib/vermouth/processors/apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,468 copying build/lib/vermouth/processors/pdb_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-09-30T06:26:12,470 copying build/lib/vermouth/graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,473 copying build/lib/vermouth/molecule.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,475 copying build/lib/vermouth/ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,479 creating build/bdist.linux-armv7l/wheel/vermouth/graphing 2023-09-30T06:26:12,480 copying build/lib/vermouth/graphing/grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/graphing 2023-09-30T06:26:12,482 copying build/lib/vermouth/geometry.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:12,485 creating build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,485 copying build/lib/vermouth/gmx/gro.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,488 copying build/lib/vermouth/gmx/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,489 copying build/lib/vermouth/gmx/itp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,492 copying build/lib/vermouth/gmx/itp_read.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,494 copying build/lib/vermouth/gmx/rtp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-09-30T06:26:12,498 creating build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,499 copying build/lib/vermouth/tests/test_sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,501 copying build/lib/vermouth/tests/test_mapping_integrative.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,503 copying build/lib/vermouth/tests/helper_functions.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,505 copying build/lib/vermouth/tests/test_native_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,506 copying build/lib/vermouth/tests/test_grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,510 creating build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-09-30T06:26:12,510 copying build/lib/vermouth/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-09-30T06:26:12,512 copying build/lib/vermouth/tests/integration_tests/test_integration.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-09-30T06:26:12,515 copying build/lib/vermouth/tests/test_ptm_detection.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,517 copying build/lib/vermouth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,519 copying build/lib/vermouth/tests/test_file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,521 copying build/lib/vermouth/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,524 copying build/lib/vermouth/tests/test_edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,527 copying build/lib/vermouth/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,529 copying build/lib/vermouth/tests/test_ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,532 copying build/lib/vermouth/tests/molecule_strategies.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,534 copying build/lib/vermouth/tests/test_ff_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,537 copying build/lib/vermouth/tests/test_do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,540 copying build/lib/vermouth/tests/test_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,542 copying build/lib/vermouth/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,544 copying build/lib/vermouth/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,546 copying build/lib/vermouth/tests/test_version.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,548 copying build/lib/vermouth/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,550 copying build/lib/vermouth/tests/test_geometry.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,552 copying build/lib/vermouth/tests/test_tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,555 copying build/lib/vermouth/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,557 copying build/lib/vermouth/tests/test_add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,559 copying build/lib/vermouth/tests/test_average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,561 copying build/lib/vermouth/tests/test_make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,563 copying build/lib/vermouth/tests/test_go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,564 copying build/lib/vermouth/tests/test_map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,567 copying build/lib/vermouth/tests/test_annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,569 copying build/lib/vermouth/tests/test_name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,571 copying build/lib/vermouth/tests/test_dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,574 copying build/lib/vermouth/tests/test_apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,576 copying build/lib/vermouth/tests/test_links.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,578 copying build/lib/vermouth/tests/test_map_input.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:12,581 creating build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-09-30T06:26:12,582 copying build/lib/vermouth/tests/gmx/test_gro.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-09-30T06:26:12,584 copying build/lib/vermouth/tests/gmx/test_itp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-09-30T06:26:12,587 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:12,588 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests 2023-09-30T06:26:12,589 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0 2023-09-30T06:26:12,591 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:12,592 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:12,595 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-09-30T06:26:12,597 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,598 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,600 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,603 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,605 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,606 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,609 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,611 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-09-30T06:26:12,613 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:12,613 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:12,615 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-09-30T06:26:12,617 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,618 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,620 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,622 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,624 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,626 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-09-30T06:26:12,628 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:12,629 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:12,632 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-09-30T06:26:12,634 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,635 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,637 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,639 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,641 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,643 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,645 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,647 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-09-30T06:26:12,649 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:12,650 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:12,652 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-09-30T06:26:12,654 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,655 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,657 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,659 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,660 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,662 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,664 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,666 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-09-30T06:26:12,669 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1 2023-09-30T06:26:12,670 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:12,671 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:12,674 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-09-30T06:26:12,676 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,677 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,680 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,682 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,683 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,685 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,687 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,689 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-09-30T06:26:12,691 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,692 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,694 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,698 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,699 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,702 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,705 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-09-30T06:26:12,708 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,709 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,711 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,713 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,715 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,717 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,719 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,722 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,724 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-09-30T06:26:12,727 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:12,728 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:12,732 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-09-30T06:26:12,734 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,734 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,736 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,738 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,740 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,742 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,745 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,747 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-09-30T06:26:12,750 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:12,751 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:12,755 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-09-30T06:26:12,757 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,758 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,760 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,762 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,764 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,766 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,768 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,771 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,773 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-09-30T06:26:12,777 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:12,777 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:12,779 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-09-30T06:26:12,785 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,786 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,790 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,793 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,794 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,796 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,799 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,801 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-09-30T06:26:12,803 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:12,804 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:12,806 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-09-30T06:26:12,811 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,812 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,815 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,817 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,818 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,820 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,822 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,824 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,826 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-09-30T06:26:12,829 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:12,830 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:12,837 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-09-30T06:26:12,840 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,840 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,845 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,846 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,848 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,852 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,854 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,856 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-09-30T06:26:12,859 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:12,860 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:12,863 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-09-30T06:26:12,866 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,867 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,869 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,871 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,873 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,875 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,877 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,879 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-09-30T06:26:12,881 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:12,882 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:12,884 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-09-30T06:26:12,887 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,888 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,890 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,892 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,894 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,895 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,898 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-09-30T06:26:12,900 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:12,901 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:12,903 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-09-30T06:26:12,906 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,907 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,910 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,913 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,914 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,916 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,918 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,920 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,922 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,924 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-09-30T06:26:12,927 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:12,928 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:12,938 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-09-30T06:26:12,941 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,942 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,947 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,952 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,954 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,957 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,959 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,961 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-09-30T06:26:12,965 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields 2023-09-30T06:26:12,967 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:12,968 copying build/lib/vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:12,970 copying build/lib/vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-09-30T06:26:12,973 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:12,974 copying build/lib/vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:12,976 copying build/lib/vermouth/tests/data/force_fields/pepplane/ala.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:12,978 copying build/lib/vermouth/tests/data/force_fields/pepplane/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-09-30T06:26:12,980 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2023-09-30T06:26:12,981 copying build/lib/vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2023-09-30T06:26:12,984 copying build/lib/vermouth/tests/data/2QWO.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:12,992 copying build/lib/vermouth/tests/data/ala5_cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:12,994 copying build/lib/vermouth/tests/data/dna-short.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:12,997 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings 2023-09-30T06:26:12,998 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test 2023-09-30T06:26:12,999 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:13,000 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:13,002 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-09-30T06:26:13,005 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2023-09-30T06:26:13,006 copying build/lib/vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2023-09-30T06:26:13,008 copying build/lib/vermouth/tests/data/1bta_mutated.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,013 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,013 copying build/lib/vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,016 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,019 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,021 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,024 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,026 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,028 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-09-30T06:26:13,031 copying build/lib/vermouth/tests/data/6E8W.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,081 copying build/lib/vermouth/tests/data/tri_alanine.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,083 copying build/lib/vermouth/tests/data/2dn2.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,097 copying build/lib/vermouth/tests/data/ala5.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,099 copying build/lib/vermouth/tests/data/1bta.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,104 copying build/lib/vermouth/tests/data/heme.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-09-30T06:26:13,105 copying build/lib/vermouth/tests/test_repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:13,108 copying build/lib/vermouth/tests/test_ismags.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:13,110 copying build/lib/vermouth/tests/test_selectors.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:13,113 creating build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-09-30T06:26:13,114 copying build/lib/vermouth/tests/pdb/test_write_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-09-30T06:26:13,116 copying build/lib/vermouth/tests/pdb/test_read_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-09-30T06:26:13,118 copying build/lib/vermouth/tests/test_section_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:13,120 copying build/lib/vermouth/tests/test_set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-09-30T06:26:13,122 creating build/bdist.linux-armv7l/wheel/vermouth/data 2023-09-30T06:26:13,124 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields 2023-09-30T06:26:13,125 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-09-30T06:26:13,126 copying build/lib/vermouth/data/force_fields/charmm/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-09-30T06:26:13,128 copying build/lib/vermouth/data/force_fields/charmm/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-09-30T06:26:13,131 copying build/lib/vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-09-30T06:26:13,177 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:13,178 copying build/lib/vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:13,182 copying build/lib/vermouth/data/force_fields/elnedyn22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:13,186 copying build/lib/vermouth/data/force_fields/elnedyn22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:13,190 copying build/lib/vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-09-30T06:26:13,193 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,194 copying build/lib/vermouth/data/force_fields/martini3001/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,197 copying build/lib/vermouth/data/force_fields/martini3001/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,198 copying build/lib/vermouth/data/force_fields/martini3001/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,200 copying build/lib/vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,203 copying build/lib/vermouth/data/force_fields/martini3001/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-09-30T06:26:13,206 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,207 copying build/lib/vermouth/data/force_fields/martini22/nucleotides.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,209 copying build/lib/vermouth/data/force_fields/martini22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,211 copying build/lib/vermouth/data/force_fields/martini22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,213 copying build/lib/vermouth/data/force_fields/martini22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,215 copying build/lib/vermouth/data/force_fields/martini22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-09-30T06:26:13,218 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-09-30T06:26:13,218 copying build/lib/vermouth/data/force_fields/amber/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-09-30T06:26:13,221 copying build/lib/vermouth/data/force_fields/amber/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-09-30T06:26:13,224 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:13,225 copying build/lib/vermouth/data/force_fields/martini30dev/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:13,227 copying build/lib/vermouth/data/force_fields/martini30dev/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:13,229 copying build/lib/vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-09-30T06:26:13,232 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:13,233 copying build/lib/vermouth/data/force_fields/elnedyn21/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:13,235 copying build/lib/vermouth/data/force_fields/elnedyn21/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:13,237 copying build/lib/vermouth/data/force_fields/elnedyn21/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:13,238 copying build/lib/vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-09-30T06:26:13,241 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-09-30T06:26:13,242 copying build/lib/vermouth/data/force_fields/gromos/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-09-30T06:26:13,245 copying build/lib/vermouth/data/force_fields/gromos/cofactors.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-09-30T06:26:13,247 copying build/lib/vermouth/data/force_fields/gromos/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-09-30T06:26:13,251 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-09-30T06:26:13,252 copying build/lib/vermouth/data/force_fields/martini22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-09-30T06:26:13,254 copying build/lib/vermouth/data/force_fields/martini22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-09-30T06:26:13,256 copying build/lib/vermouth/data/force_fields/martini22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-09-30T06:26:13,257 copying build/lib/vermouth/data/force_fields/martini22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-09-30T06:26:13,260 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:13,261 copying build/lib/vermouth/data/force_fields/elnedyn22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:13,263 copying build/lib/vermouth/data/force_fields/elnedyn22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:13,265 copying build/lib/vermouth/data/force_fields/elnedyn22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:13,267 copying build/lib/vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-09-30T06:26:13,270 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:13,271 copying build/lib/vermouth/data/force_fields/martini30b32/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:13,273 copying build/lib/vermouth/data/force_fields/martini30b32/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:13,275 copying build/lib/vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:13,277 copying build/lib/vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-09-30T06:26:13,281 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,282 copying build/lib/vermouth/data/mappings/lys.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,284 copying build/lib/vermouth/data/mappings/glu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,286 copying build/lib/vermouth/data/mappings/trp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,287 copying build/lib/vermouth/data/mappings/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,289 copying build/lib/vermouth/data/mappings/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,292 copying build/lib/vermouth/data/mappings/pro.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,293 copying build/lib/vermouth/data/mappings/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,295 copying build/lib/vermouth/data/mappings/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,297 copying build/lib/vermouth/data/mappings/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,299 copying build/lib/vermouth/data/mappings/ala.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,301 copying build/lib/vermouth/data/mappings/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,303 copying build/lib/vermouth/data/mappings/gln.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,305 copying build/lib/vermouth/data/mappings/glu0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,307 copying build/lib/vermouth/data/mappings/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,308 copying build/lib/vermouth/data/mappings/asp.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,310 copying build/lib/vermouth/data/mappings/arg.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,312 copying build/lib/vermouth/data/mappings/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,314 copying build/lib/vermouth/data/mappings/cys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,316 copying build/lib/vermouth/data/mappings/leu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,318 copying build/lib/vermouth/data/mappings/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,319 copying build/lib/vermouth/data/mappings/met.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,321 copying build/lib/vermouth/data/mappings/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,323 copying build/lib/vermouth/data/mappings/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,325 copying build/lib/vermouth/data/mappings/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,327 copying build/lib/vermouth/data/mappings/modifications.gromos.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,329 copying build/lib/vermouth/data/mappings/asn.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,331 copying build/lib/vermouth/data/mappings/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,332 copying build/lib/vermouth/data/mappings/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,337 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,338 copying build/lib/vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,340 copying build/lib/vermouth/data/mappings/martini3001/thf.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,342 copying build/lib/vermouth/data/mappings/martini3001/thp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,344 copying build/lib/vermouth/data/mappings/martini3001/gly.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,346 copying build/lib/vermouth/data/mappings/martini3001/ash.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,347 copying build/lib/vermouth/data/mappings/martini3001/dman.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,349 copying build/lib/vermouth/data/mappings/martini3001/phen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,351 copying build/lib/vermouth/data/mappings/martini3001/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,353 copying build/lib/vermouth/data/mappings/martini3001/his.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,355 copying build/lib/vermouth/data/mappings/martini3001/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,357 copying build/lib/vermouth/data/mappings/martini3001/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,359 copying build/lib/vermouth/data/mappings/martini3001/diol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,361 copying build/lib/vermouth/data/mappings/martini3001/eben.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,362 copying build/lib/vermouth/data/mappings/martini3001/fura.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,364 copying build/lib/vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,366 copying build/lib/vermouth/data/mappings/martini3001/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,368 copying build/lib/vermouth/data/mappings/martini3001/ile.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,370 copying build/lib/vermouth/data/mappings/martini3001/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,371 copying build/lib/vermouth/data/mappings/martini3001/antr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,373 copying build/lib/vermouth/data/mappings/martini3001/hip.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,375 copying build/lib/vermouth/data/mappings/martini3001/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,377 copying build/lib/vermouth/data/mappings/martini3001/inda.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,379 copying build/lib/vermouth/data/mappings/martini3001/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,381 copying build/lib/vermouth/data/mappings/martini3001/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,383 copying build/lib/vermouth/data/mappings/martini3001/thip.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,384 copying build/lib/vermouth/data/mappings/martini3001/bald.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,386 copying build/lib/vermouth/data/mappings/martini3001/hid.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,388 copying build/lib/vermouth/data/mappings/martini3001/hie.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,390 copying build/lib/vermouth/data/mappings/martini3001/gln.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,392 copying build/lib/vermouth/data/mappings/martini3001/asn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,394 copying build/lib/vermouth/data/mappings/martini3001/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,396 copying build/lib/vermouth/data/mappings/martini3001/tyr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,398 copying build/lib/vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,400 copying build/lib/vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,402 copying build/lib/vermouth/data/mappings/martini3001/ala.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,404 copying build/lib/vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,406 copying build/lib/vermouth/data/mappings/martini3001/asp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,408 copying build/lib/vermouth/data/mappings/martini3001/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,410 copying build/lib/vermouth/data/mappings/martini3001/thr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,412 copying build/lib/vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,413 copying build/lib/vermouth/data/mappings/martini3001/cume.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,415 copying build/lib/vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,417 copying build/lib/vermouth/data/mappings/martini3001/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,419 copying build/lib/vermouth/data/mappings/martini3001/leu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,420 copying build/lib/vermouth/data/mappings/martini3001/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,422 copying build/lib/vermouth/data/mappings/martini3001/phe.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,424 copying build/lib/vermouth/data/mappings/martini3001/meob.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,426 copying build/lib/vermouth/data/mappings/martini3001/ser.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,428 copying build/lib/vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,430 copying build/lib/vermouth/data/mappings/martini3001/cys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,432 copying build/lib/vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,433 copying build/lib/vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,435 copying build/lib/vermouth/data/mappings/martini3001/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,437 copying build/lib/vermouth/data/mappings/martini3001/val.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,439 copying build/lib/vermouth/data/mappings/martini3001/lys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,441 copying build/lib/vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,443 copying build/lib/vermouth/data/mappings/martini3001/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,445 copying build/lib/vermouth/data/mappings/martini3001/mind.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,446 copying build/lib/vermouth/data/mappings/martini3001/indo.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,448 copying build/lib/vermouth/data/mappings/martini3001/met.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,450 copying build/lib/vermouth/data/mappings/martini3001/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,452 copying build/lib/vermouth/data/mappings/martini3001/glh.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,454 copying build/lib/vermouth/data/mappings/martini3001/glup.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,456 copying build/lib/vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,458 copying build/lib/vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,460 copying build/lib/vermouth/data/mappings/martini3001/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,461 copying build/lib/vermouth/data/mappings/martini3001/lyn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,463 copying build/lib/vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,465 copying build/lib/vermouth/data/mappings/martini3001/diox.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,467 copying build/lib/vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,469 copying build/lib/vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,470 copying build/lib/vermouth/data/mappings/martini3001/glu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,472 copying build/lib/vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,474 copying build/lib/vermouth/data/mappings/martini3001/pro.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,476 copying build/lib/vermouth/data/mappings/martini3001/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,478 copying build/lib/vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,480 copying build/lib/vermouth/data/mappings/martini3001/arg.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,481 copying build/lib/vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,484 copying build/lib/vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,485 copying build/lib/vermouth/data/mappings/martini3001/c3.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,487 copying build/lib/vermouth/data/mappings/martini3001/trp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,489 copying build/lib/vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,491 copying build/lib/vermouth/data/mappings/martini3001/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,493 copying build/lib/vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,494 copying build/lib/vermouth/data/mappings/martini3001/prld.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,496 copying build/lib/vermouth/data/mappings/martini3001/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,498 copying build/lib/vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,500 copying build/lib/vermouth/data/mappings/martini3001/naft.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,502 copying build/lib/vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,504 copying build/lib/vermouth/data/mappings/martini3001/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,506 copying build/lib/vermouth/data/mappings/martini3001/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,507 copying build/lib/vermouth/data/mappings/martini3001/styr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,509 copying build/lib/vermouth/data/mappings/martini3001/imia.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,511 copying build/lib/vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,513 copying build/lib/vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,515 copying build/lib/vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,517 copying build/lib/vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-09-30T06:26:13,518 copying build/lib/vermouth/data/mappings/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,521 copying build/lib/vermouth/data/mappings/gly.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,522 copying build/lib/vermouth/data/mappings/arg.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,524 copying build/lib/vermouth/data/mappings/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,526 copying build/lib/vermouth/data/mappings/nad.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,528 copying build/lib/vermouth/data/mappings/his.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,530 copying build/lib/vermouth/data/mappings/tyr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,532 copying build/lib/vermouth/data/mappings/phe.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,534 copying build/lib/vermouth/data/mappings/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,536 copying build/lib/vermouth/data/mappings/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,538 copying build/lib/vermouth/data/mappings/ser.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,540 copying build/lib/vermouth/data/mappings/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,542 copying build/lib/vermouth/data/mappings/asp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,544 copying build/lib/vermouth/data/mappings/lys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,546 copying build/lib/vermouth/data/mappings/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,548 copying build/lib/vermouth/data/mappings/glu.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,550 copying build/lib/vermouth/data/mappings/fmn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,552 copying build/lib/vermouth/data/mappings/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,553 copying build/lib/vermouth/data/mappings/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,556 copying build/lib/vermouth/data/mappings/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,558 copying build/lib/vermouth/data/mappings/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,559 copying build/lib/vermouth/data/mappings/tpp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,561 copying build/lib/vermouth/data/mappings/ile.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,563 copying build/lib/vermouth/data/mappings/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,565 copying build/lib/vermouth/data/mappings/thr.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,567 copying build/lib/vermouth/data/mappings/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,569 copying build/lib/vermouth/data/mappings/asp0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,571 copying build/lib/vermouth/data/mappings/ser.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,572 copying build/lib/vermouth/data/mappings/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,574 copying build/lib/vermouth/data/mappings/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,577 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,578 copying build/lib/vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,580 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,582 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,584 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,586 copying build/lib/vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,588 copying build/lib/vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,590 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,592 copying build/lib/vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,594 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,596 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,598 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,600 copying build/lib/vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,602 copying build/lib/vermouth/data/mappings/elnedyn21/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,604 copying build/lib/vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,605 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,607 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,609 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,611 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,613 copying build/lib/vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,615 copying build/lib/vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,617 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,619 copying build/lib/vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,620 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,622 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,624 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,626 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,628 copying build/lib/vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,630 copying build/lib/vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,632 copying build/lib/vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-09-30T06:26:13,634 copying build/lib/vermouth/data/mappings/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,635 copying build/lib/vermouth/data/mappings/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,637 copying build/lib/vermouth/data/mappings/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,639 copying build/lib/vermouth/data/mappings/thr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,641 copying build/lib/vermouth/data/mappings/asn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,643 copying build/lib/vermouth/data/mappings/val.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,645 copying build/lib/vermouth/data/mappings/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,647 copying build/lib/vermouth/data/mappings/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,649 copying build/lib/vermouth/data/mappings/gln.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-09-30T06:26:13,651 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,652 copying build/lib/vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,654 copying build/lib/vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,656 copying build/lib/vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,658 copying build/lib/vermouth/data/mappings/martini30b32/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,660 copying build/lib/vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,661 copying build/lib/vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,663 copying build/lib/vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,665 copying build/lib/vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,667 copying build/lib/vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,669 copying build/lib/vermouth/data/mappings/martini30b32/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,670 copying build/lib/vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,672 copying build/lib/vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,674 copying build/lib/vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,676 copying build/lib/vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,678 copying build/lib/vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,680 copying build/lib/vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,682 copying build/lib/vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,684 copying build/lib/vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,686 copying build/lib/vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,688 copying build/lib/vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,690 copying build/lib/vermouth/data/mappings/martini30b32/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,691 copying build/lib/vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,693 copying build/lib/vermouth/data/mappings/martini30b32/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-09-30T06:26:13,696 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,697 copying build/lib/vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,699 copying build/lib/vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,701 copying build/lib/vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,703 copying build/lib/vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,705 copying build/lib/vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,707 copying build/lib/vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,709 copying build/lib/vermouth/data/mappings/elnedyn/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,711 copying build/lib/vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,713 copying build/lib/vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,715 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,716 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,718 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,720 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,722 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,724 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,726 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,727 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,729 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-09-30T06:26:13,731 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,733 copying build/lib/vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,735 copying build/lib/vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,737 copying build/lib/vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,739 copying build/lib/vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,741 copying build/lib/vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,743 copying build/lib/vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,745 copying build/lib/vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,747 copying build/lib/vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,749 copying build/lib/vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,751 copying build/lib/vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,753 copying build/lib/vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,754 copying build/lib/vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,756 copying build/lib/vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,758 copying build/lib/vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,760 copying build/lib/vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,762 copying build/lib/vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,763 copying build/lib/vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,765 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,767 copying build/lib/vermouth/data/mappings/elnedyn/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,769 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,771 copying build/lib/vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,773 copying build/lib/vermouth/data/mappings/elnedyn/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-09-30T06:26:13,775 copying build/lib/vermouth/data/quotes.txt -> build/bdist.linux-armv7l/wheel/vermouth/data 2023-09-30T06:26:13,777 copying build/lib/vermouth/file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:13,779 copying build/lib/vermouth/selectors.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-09-30T06:26:13,782 creating build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-09-30T06:26:13,783 copying build/lib/vermouth/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-09-30T06:26:13,785 copying build/lib/vermouth/pdb/pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-09-30T06:26:13,788 running install_egg_info 2023-09-30T06:26:13,794 Copying vermouth.egg-info to build/bdist.linux-armv7l/wheel/vermouth-0.9.6-py3.11.egg-info 2023-09-30T06:26:13,809 running install_scripts 2023-09-30T06:26:13,810 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.6.data 2023-09-30T06:26:13,811 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.6.data/scripts 2023-09-30T06:26:13,812 copying build/scripts-3.11/martinize2 -> build/bdist.linux-armv7l/wheel/vermouth-0.9.6.data/scripts 2023-09-30T06:26:13,815 changing mode of build/bdist.linux-armv7l/wheel/vermouth-0.9.6.data/scripts/martinize2 to 755 2023-09-30T06:26:13,833 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.6.dist-info/WHEEL 2023-09-30T06:26:13,836 creating '/tmp/pip-wheel-1v5yltqb/.tmp-uqv6yaru/vermouth-0.9.6-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-30T06:26:13,839 adding 'vermouth/__init__.py' 2023-09-30T06:26:13,841 adding 'vermouth/citation_parser.py' 2023-09-30T06:26:13,843 adding 'vermouth/edge_tuning.py' 2023-09-30T06:26:13,848 adding 'vermouth/ffinput.py' 2023-09-30T06:26:13,850 adding 'vermouth/file_writer.py' 2023-09-30T06:26:13,852 adding 'vermouth/forcefield.py' 2023-09-30T06:26:13,853 adding 'vermouth/geometry.py' 2023-09-30T06:26:13,856 adding 'vermouth/graph_utils.py' 2023-09-30T06:26:13,861 adding 'vermouth/ismags.py' 2023-09-30T06:26:13,864 adding 'vermouth/log_helpers.py' 2023-09-30T06:26:13,867 adding 'vermouth/map_input.py' 2023-09-30T06:26:13,871 adding 'vermouth/map_parser.py' 2023-09-30T06:26:13,878 adding 'vermouth/molecule.py' 2023-09-30T06:26:13,881 adding 'vermouth/parser_utils.py' 2023-09-30T06:26:13,883 adding 'vermouth/selectors.py' 2023-09-30T06:26:13,884 adding 'vermouth/system.py' 2023-09-30T06:26:13,886 adding 'vermouth/truncating_formatter.py' 2023-09-30T06:26:13,888 adding 'vermouth/utils.py' 2023-09-30T06:26:13,889 adding 'vermouth/data/quotes.txt' 2023-09-30T06:26:13,894 adding 'vermouth/data/force_fields/amber/aminoacids.rtp' 2023-09-30T06:26:13,895 adding 'vermouth/data/force_fields/amber/modifications.ff' 2023-09-30T06:26:13,898 adding 'vermouth/data/force_fields/charmm/aminoacids.rtp' 2023-09-30T06:26:13,900 adding 'vermouth/data/force_fields/charmm/modifications.ff' 2023-09-30T06:26:14,104 adding 'vermouth/data/force_fields/charmm/small_molecule_charmm.ff' 2023-09-30T06:26:14,122 adding 'vermouth/data/force_fields/elnedyn21/aminoacids.ff' 2023-09-30T06:26:14,123 adding 'vermouth/data/force_fields/elnedyn21/citations.bib' 2023-09-30T06:26:14,124 adding 'vermouth/data/force_fields/elnedyn21/general.ff' 2023-09-30T06:26:14,126 adding 'vermouth/data/force_fields/elnedyn21/modifications.ff' 2023-09-30T06:26:14,128 adding 'vermouth/data/force_fields/elnedyn22/aminoacids.ff' 2023-09-30T06:26:14,129 adding 'vermouth/data/force_fields/elnedyn22/citations.bib' 2023-09-30T06:26:14,130 adding 'vermouth/data/force_fields/elnedyn22/general.ff' 2023-09-30T06:26:14,132 adding 'vermouth/data/force_fields/elnedyn22/modifications.ff' 2023-09-30T06:26:14,134 adding 'vermouth/data/force_fields/elnedyn22p/aminoacids.ff' 2023-09-30T06:26:14,137 adding 'vermouth/data/force_fields/elnedyn22p/citations.bib' 2023-09-30T06:26:14,138 adding 'vermouth/data/force_fields/elnedyn22p/general.ff' 2023-09-30T06:26:14,140 adding 'vermouth/data/force_fields/elnedyn22p/modifications.ff' 2023-09-30T06:26:14,145 adding 'vermouth/data/force_fields/gromos/aminoacids.rtp' 2023-09-30T06:26:14,148 adding 'vermouth/data/force_fields/gromos/cofactors.ff' 2023-09-30T06:26:14,149 adding 'vermouth/data/force_fields/gromos/modifications.ff' 2023-09-30T06:26:14,152 adding 'vermouth/data/force_fields/martini22/aminoacids.ff' 2023-09-30T06:26:14,154 adding 'vermouth/data/force_fields/martini22/citations.bib' 2023-09-30T06:26:14,155 adding 'vermouth/data/force_fields/martini22/general.ff' 2023-09-30T06:26:14,156 adding 'vermouth/data/force_fields/martini22/modifications.ff' 2023-09-30T06:26:14,158 adding 'vermouth/data/force_fields/martini22/nucleotides.ff' 2023-09-30T06:26:14,161 adding 'vermouth/data/force_fields/martini22p/aminoacids.ff' 2023-09-30T06:26:14,162 adding 'vermouth/data/force_fields/martini22p/citations.bib' 2023-09-30T06:26:14,163 adding 'vermouth/data/force_fields/martini22p/general.ff' 2023-09-30T06:26:14,165 adding 'vermouth/data/force_fields/martini22p/modifications.ff' 2023-09-30T06:26:14,168 adding 'vermouth/data/force_fields/martini3001/aminoacids.ff' 2023-09-30T06:26:14,170 adding 'vermouth/data/force_fields/martini3001/citations.bib' 2023-09-30T06:26:14,171 adding 'vermouth/data/force_fields/martini3001/general.ff' 2023-09-30T06:26:14,172 adding 'vermouth/data/force_fields/martini3001/modifications.ff' 2023-09-30T06:26:14,174 adding 'vermouth/data/force_fields/martini3001/small_molecule_martini3.ff' 2023-09-30T06:26:14,177 adding 'vermouth/data/force_fields/martini30b32/aminoacids.ff' 2023-09-30T06:26:14,178 adding 'vermouth/data/force_fields/martini30b32/citations.bib' 2023-09-30T06:26:14,179 adding 'vermouth/data/force_fields/martini30b32/modifications.ff' 2023-09-30T06:26:14,180 adding 'vermouth/data/force_fields/martini30b32/small_molecules.ff' 2023-09-30T06:26:14,184 adding 'vermouth/data/force_fields/martini30dev/aminoacids.ff' 2023-09-30T06:26:14,185 adding 'vermouth/data/force_fields/martini30dev/citations.bib' 2023-09-30T06:26:14,186 adding 'vermouth/data/force_fields/martini30dev/modifications.ff' 2023-09-30T06:26:14,189 adding 'vermouth/data/mappings/ala.charmm36.map' 2023-09-30T06:26:14,190 adding 'vermouth/data/mappings/ala.gromos.map' 2023-09-30T06:26:14,191 adding 'vermouth/data/mappings/arg.charmm36.map' 2023-09-30T06:26:14,192 adding 'vermouth/data/mappings/arg.charmm36.martini22p.map' 2023-09-30T06:26:14,194 adding 'vermouth/data/mappings/arg.gromos.map' 2023-09-30T06:26:14,195 adding 'vermouth/data/mappings/asn.charmm36.map' 2023-09-30T06:26:14,196 adding 'vermouth/data/mappings/asn.charmm36.martini22p.map' 2023-09-30T06:26:14,197 adding 'vermouth/data/mappings/asn.gromos.map' 2023-09-30T06:26:14,198 adding 'vermouth/data/mappings/asp.charmm36.map' 2023-09-30T06:26:14,200 adding 'vermouth/data/mappings/asp.charmm36.martini22p.map' 2023-09-30T06:26:14,201 adding 'vermouth/data/mappings/asp.gromos.map' 2023-09-30T06:26:14,202 adding 'vermouth/data/mappings/asp0.gromos.map' 2023-09-30T06:26:14,203 adding 'vermouth/data/mappings/chol.charmm36.map' 2023-09-30T06:26:14,204 adding 'vermouth/data/mappings/cys.charmm36.map' 2023-09-30T06:26:14,205 adding 'vermouth/data/mappings/cys.gromos.map' 2023-09-30T06:26:14,207 adding 'vermouth/data/mappings/dmpc.charmm36.map' 2023-09-30T06:26:14,209 adding 'vermouth/data/mappings/dopc.charmm36.map' 2023-09-30T06:26:14,210 adding 'vermouth/data/mappings/dppc.charmm36.map' 2023-09-30T06:26:14,212 adding 'vermouth/data/mappings/dppg.charmm36.map' 2023-09-30T06:26:14,213 adding 'vermouth/data/mappings/fmn.gromos.map' 2023-09-30T06:26:14,214 adding 'vermouth/data/mappings/gln.charmm36.map' 2023-09-30T06:26:14,215 adding 'vermouth/data/mappings/gln.charmm36.martini22p.map' 2023-09-30T06:26:14,216 adding 'vermouth/data/mappings/gln.gromos.map' 2023-09-30T06:26:14,218 adding 'vermouth/data/mappings/glu.charmm36.map' 2023-09-30T06:26:14,219 adding 'vermouth/data/mappings/glu.charmm36.martini22p.map' 2023-09-30T06:26:14,220 adding 'vermouth/data/mappings/glu.gromos.map' 2023-09-30T06:26:14,221 adding 'vermouth/data/mappings/glu0.gromos.map' 2023-09-30T06:26:14,222 adding 'vermouth/data/mappings/gly.charmm36.map' 2023-09-30T06:26:14,224 adding 'vermouth/data/mappings/gly.gromos.map' 2023-09-30T06:26:14,225 adding 'vermouth/data/mappings/his.charmm36.map' 2023-09-30T06:26:14,226 adding 'vermouth/data/mappings/his.gromos.map' 2023-09-30T06:26:14,227 adding 'vermouth/data/mappings/hsd.charmm36.map' 2023-09-30T06:26:14,229 adding 'vermouth/data/mappings/hse.charmm36.map' 2023-09-30T06:26:14,230 adding 'vermouth/data/mappings/hsp.charmm36.map' 2023-09-30T06:26:14,231 adding 'vermouth/data/mappings/ile.charmm36.map' 2023-09-30T06:26:14,232 adding 'vermouth/data/mappings/ile.gromos.map' 2023-09-30T06:26:14,234 adding 'vermouth/data/mappings/leu.charmm36.map' 2023-09-30T06:26:14,235 adding 'vermouth/data/mappings/leu.gromos.map' 2023-09-30T06:26:14,236 adding 'vermouth/data/mappings/lys.charmm36.map' 2023-09-30T06:26:14,237 adding 'vermouth/data/mappings/lys.charmm36.martini22p.map' 2023-09-30T06:26:14,239 adding 'vermouth/data/mappings/lys.gromos.map' 2023-09-30T06:26:14,240 adding 'vermouth/data/mappings/met.charmm36.map' 2023-09-30T06:26:14,241 adding 'vermouth/data/mappings/met.gromos.map' 2023-09-30T06:26:14,242 adding 'vermouth/data/mappings/modifications.gromos.mapping' 2023-09-30T06:26:14,243 adding 'vermouth/data/mappings/modifications.mapping' 2023-09-30T06:26:14,245 adding 'vermouth/data/mappings/nad.gromos.map' 2023-09-30T06:26:14,246 adding 'vermouth/data/mappings/phe.charmm36.map' 2023-09-30T06:26:14,247 adding 'vermouth/data/mappings/phe.gromos.map' 2023-09-30T06:26:14,248 adding 'vermouth/data/mappings/popc.charmm36.map' 2023-09-30T06:26:14,250 adding 'vermouth/data/mappings/pope.charmm36.map' 2023-09-30T06:26:14,251 adding 'vermouth/data/mappings/popg.charmm36.map' 2023-09-30T06:26:14,253 adding 'vermouth/data/mappings/pops.charmm36.map' 2023-09-30T06:26:14,254 adding 'vermouth/data/mappings/pro.charmm36.map' 2023-09-30T06:26:14,255 adding 'vermouth/data/mappings/pro.gromos.map' 2023-09-30T06:26:14,256 adding 'vermouth/data/mappings/ser.charmm36.map' 2023-09-30T06:26:14,257 adding 'vermouth/data/mappings/ser.charmm36.martini22p.map' 2023-09-30T06:26:14,258 adding 'vermouth/data/mappings/ser.gromos.map' 2023-09-30T06:26:14,259 adding 'vermouth/data/mappings/thr.charmm36.map' 2023-09-30T06:26:14,261 adding 'vermouth/data/mappings/thr.charmm36.martini22p.map' 2023-09-30T06:26:14,262 adding 'vermouth/data/mappings/thr.gromos.map' 2023-09-30T06:26:14,263 adding 'vermouth/data/mappings/tpp.gromos.map' 2023-09-30T06:26:14,264 adding 'vermouth/data/mappings/trp.charmm36.map' 2023-09-30T06:26:14,265 adding 'vermouth/data/mappings/trp.gromos.map' 2023-09-30T06:26:14,267 adding 'vermouth/data/mappings/tyr.charmm36.map' 2023-09-30T06:26:14,268 adding 'vermouth/data/mappings/tyr.gromos.map' 2023-09-30T06:26:14,269 adding 'vermouth/data/mappings/val.charmm36.map' 2023-09-30T06:26:14,270 adding 'vermouth/data/mappings/val.gromos.map' 2023-09-30T06:26:14,272 adding 'vermouth/data/mappings/elnedyn/ala.charmm36.map' 2023-09-30T06:26:14,274 adding 'vermouth/data/mappings/elnedyn/arg.charmm36.map' 2023-09-30T06:26:14,275 adding 'vermouth/data/mappings/elnedyn/asn.charmm36.map' 2023-09-30T06:26:14,276 adding 'vermouth/data/mappings/elnedyn/asp.charmm36.map' 2023-09-30T06:26:14,278 adding 'vermouth/data/mappings/elnedyn/chol.charmm36.map' 2023-09-30T06:26:14,279 adding 'vermouth/data/mappings/elnedyn/cys.charmm36.map' 2023-09-30T06:26:14,280 adding 'vermouth/data/mappings/elnedyn/dmpc.charmm36.map' 2023-09-30T06:26:14,282 adding 'vermouth/data/mappings/elnedyn/dopc.charmm36.map' 2023-09-30T06:26:14,284 adding 'vermouth/data/mappings/elnedyn/dppc.charmm36.map' 2023-09-30T06:26:14,285 adding 'vermouth/data/mappings/elnedyn/dppg.charmm36.map' 2023-09-30T06:26:14,286 adding 'vermouth/data/mappings/elnedyn/gln.charmm36.map' 2023-09-30T06:26:14,288 adding 'vermouth/data/mappings/elnedyn/glu.charmm36.map' 2023-09-30T06:26:14,289 adding 'vermouth/data/mappings/elnedyn/gly.charmm36.map' 2023-09-30T06:26:14,290 adding 'vermouth/data/mappings/elnedyn/his.charmm36.map' 2023-09-30T06:26:14,291 adding 'vermouth/data/mappings/elnedyn/ile.charmm36.map' 2023-09-30T06:26:14,292 adding 'vermouth/data/mappings/elnedyn/leu.charmm36.map' 2023-09-30T06:26:14,294 adding 'vermouth/data/mappings/elnedyn/lys.charmm36.map' 2023-09-30T06:26:14,295 adding 'vermouth/data/mappings/elnedyn/met.charmm36.map' 2023-09-30T06:26:14,296 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping' 2023-09-30T06:26:14,297 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping' 2023-09-30T06:26:14,299 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping' 2023-09-30T06:26:14,300 adding 'vermouth/data/mappings/elnedyn/phe.charmm36.map' 2023-09-30T06:26:14,301 adding 'vermouth/data/mappings/elnedyn/popc.charmm36.map' 2023-09-30T06:26:14,303 adding 'vermouth/data/mappings/elnedyn/pope.charmm36.map' 2023-09-30T06:26:14,305 adding 'vermouth/data/mappings/elnedyn/popg.charmm36.map' 2023-09-30T06:26:14,306 adding 'vermouth/data/mappings/elnedyn/pops.charmm36.map' 2023-09-30T06:26:14,308 adding 'vermouth/data/mappings/elnedyn/pro.charmm36.map' 2023-09-30T06:26:14,309 adding 'vermouth/data/mappings/elnedyn/ser.charmm36.map' 2023-09-30T06:26:14,310 adding 'vermouth/data/mappings/elnedyn/thr.charmm36.map' 2023-09-30T06:26:14,311 adding 'vermouth/data/mappings/elnedyn/trp.charmm36.map' 2023-09-30T06:26:14,312 adding 'vermouth/data/mappings/elnedyn/tyr.charmm36.map' 2023-09-30T06:26:14,313 adding 'vermouth/data/mappings/elnedyn/val.charmm36.map' 2023-09-30T06:26:14,315 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,316 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,318 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,319 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,320 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,321 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,322 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,323 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,326 adding 'vermouth/data/mappings/elnedyn21/ala.charmm36.map' 2023-09-30T06:26:14,327 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,328 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.map' 2023-09-30T06:26:14,329 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,330 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.map' 2023-09-30T06:26:14,332 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,333 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.map' 2023-09-30T06:26:14,334 adding 'vermouth/data/mappings/elnedyn21/cys.charmm36.map' 2023-09-30T06:26:14,335 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,336 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.map' 2023-09-30T06:26:14,338 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,339 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.map' 2023-09-30T06:26:14,340 adding 'vermouth/data/mappings/elnedyn21/gly.charmm36.map' 2023-09-30T06:26:14,341 adding 'vermouth/data/mappings/elnedyn21/his.charmm36.map' 2023-09-30T06:26:14,342 adding 'vermouth/data/mappings/elnedyn21/ile.charmm36.map' 2023-09-30T06:26:14,344 adding 'vermouth/data/mappings/elnedyn21/leu.charmm36.map' 2023-09-30T06:26:14,345 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,346 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.map' 2023-09-30T06:26:14,347 adding 'vermouth/data/mappings/elnedyn21/met.charmm36.map' 2023-09-30T06:26:14,349 adding 'vermouth/data/mappings/elnedyn21/modifications.mapping' 2023-09-30T06:26:14,350 adding 'vermouth/data/mappings/elnedyn21/phe.charmm36.map' 2023-09-30T06:26:14,351 adding 'vermouth/data/mappings/elnedyn21/pro.charmm36.map' 2023-09-30T06:26:14,352 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,354 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.map' 2023-09-30T06:26:14,355 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map' 2023-09-30T06:26:14,356 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.map' 2023-09-30T06:26:14,357 adding 'vermouth/data/mappings/elnedyn21/trp.charmm36.map' 2023-09-30T06:26:14,359 adding 'vermouth/data/mappings/elnedyn21/tyr.charmm36.map' 2023-09-30T06:26:14,360 adding 'vermouth/data/mappings/elnedyn21/val.charmm36.map' 2023-09-30T06:26:14,363 adding 'vermouth/data/mappings/martini3001/ala.amber.map' 2023-09-30T06:26:14,365 adding 'vermouth/data/mappings/martini3001/ala.charmm36.map' 2023-09-30T06:26:14,366 adding 'vermouth/data/mappings/martini3001/antr.charmm36.map' 2023-09-30T06:26:14,367 adding 'vermouth/data/mappings/martini3001/arg.amber.map' 2023-09-30T06:26:14,369 adding 'vermouth/data/mappings/martini3001/arg.charmm36.map' 2023-09-30T06:26:14,370 adding 'vermouth/data/mappings/martini3001/ash.amber.map' 2023-09-30T06:26:14,371 adding 'vermouth/data/mappings/martini3001/asn.amber.map' 2023-09-30T06:26:14,372 adding 'vermouth/data/mappings/martini3001/asn.charmm36.map' 2023-09-30T06:26:14,373 adding 'vermouth/data/mappings/martini3001/asp.amber.map' 2023-09-30T06:26:14,374 adding 'vermouth/data/mappings/martini3001/asp.charmm36.map' 2023-09-30T06:26:14,375 adding 'vermouth/data/mappings/martini3001/aspp.charmm36.map' 2023-09-30T06:26:14,376 adding 'vermouth/data/mappings/martini3001/bald.charmm36.map' 2023-09-30T06:26:14,377 adding 'vermouth/data/mappings/martini3001/benz.charmm36.map' 2023-09-30T06:26:14,378 adding 'vermouth/data/mappings/martini3001/c3.charmm36.map' 2023-09-30T06:26:14,379 adding 'vermouth/data/mappings/martini3001/chxe.charmm36.map' 2023-09-30T06:26:14,380 adding 'vermouth/data/mappings/martini3001/cpen.charmm36.map' 2023-09-30T06:26:14,381 adding 'vermouth/data/mappings/martini3001/cume.charmm36.map' 2023-09-30T06:26:14,383 adding 'vermouth/data/mappings/martini3001/cys.amber.map' 2023-09-30T06:26:14,384 adding 'vermouth/data/mappings/martini3001/cys.charmm36.map' 2023-09-30T06:26:14,385 adding 'vermouth/data/mappings/martini3001/diol.charmm36.map' 2023-09-30T06:26:14,386 adding 'vermouth/data/mappings/martini3001/diox.charmm36.map' 2023-09-30T06:26:14,387 adding 'vermouth/data/mappings/martini3001/dman.charmm36.map' 2023-09-30T06:26:14,388 adding 'vermouth/data/mappings/martini3001/eben.charmm36.map' 2023-09-30T06:26:14,389 adding 'vermouth/data/mappings/martini3001/fura.charmm36.map' 2023-09-30T06:26:14,390 adding 'vermouth/data/mappings/martini3001/glh.amber.map' 2023-09-30T06:26:14,392 adding 'vermouth/data/mappings/martini3001/gln.amber.map' 2023-09-30T06:26:14,393 adding 'vermouth/data/mappings/martini3001/gln.charmm36.map' 2023-09-30T06:26:14,394 adding 'vermouth/data/mappings/martini3001/glu.amber.map' 2023-09-30T06:26:14,395 adding 'vermouth/data/mappings/martini3001/glu.charmm36.map' 2023-09-30T06:26:14,396 adding 'vermouth/data/mappings/martini3001/glup.charmm36.map' 2023-09-30T06:26:14,398 adding 'vermouth/data/mappings/martini3001/gly.amber.map' 2023-09-30T06:26:14,399 adding 'vermouth/data/mappings/martini3001/gly.charmm36.map' 2023-09-30T06:26:14,400 adding 'vermouth/data/mappings/martini3001/hid.amber.map' 2023-09-30T06:26:14,401 adding 'vermouth/data/mappings/martini3001/hie.amber.map' 2023-09-30T06:26:14,403 adding 'vermouth/data/mappings/martini3001/hip.amber.map' 2023-09-30T06:26:14,404 adding 'vermouth/data/mappings/martini3001/his.amber.map' 2023-09-30T06:26:14,405 adding 'vermouth/data/mappings/martini3001/his.charmm36.map' 2023-09-30T06:26:14,406 adding 'vermouth/data/mappings/martini3001/hsd.charmm36.map' 2023-09-30T06:26:14,407 adding 'vermouth/data/mappings/martini3001/hse.charmm36.map' 2023-09-30T06:26:14,409 adding 'vermouth/data/mappings/martini3001/hsp.charmm36.map' 2023-09-30T06:26:14,410 adding 'vermouth/data/mappings/martini3001/ile.amber.map' 2023-09-30T06:26:14,411 adding 'vermouth/data/mappings/martini3001/ile.charmm36.map' 2023-09-30T06:26:14,412 adding 'vermouth/data/mappings/martini3001/imia.charmm36.map' 2023-09-30T06:26:14,413 adding 'vermouth/data/mappings/martini3001/inda.charmm36.map' 2023-09-30T06:26:14,414 adding 'vermouth/data/mappings/martini3001/indo.charmm36.map' 2023-09-30T06:26:14,416 adding 'vermouth/data/mappings/martini3001/leu.amber.map' 2023-09-30T06:26:14,417 adding 'vermouth/data/mappings/martini3001/leu.charmm36.map' 2023-09-30T06:26:14,418 adding 'vermouth/data/mappings/martini3001/lsn.charmm36.map' 2023-09-30T06:26:14,420 adding 'vermouth/data/mappings/martini3001/lyn.amber.map' 2023-09-30T06:26:14,421 adding 'vermouth/data/mappings/martini3001/lys.amber.map' 2023-09-30T06:26:14,422 adding 'vermouth/data/mappings/martini3001/lys.charmm36.map' 2023-09-30T06:26:14,423 adding 'vermouth/data/mappings/martini3001/mboa.charmm36.map' 2023-09-30T06:26:14,424 adding 'vermouth/data/mappings/martini3001/mcpe.charmm36.map' 2023-09-30T06:26:14,426 adding 'vermouth/data/mappings/martini3001/meob.charmm36.map' 2023-09-30T06:26:14,427 adding 'vermouth/data/mappings/martini3001/met.amber.map' 2023-09-30T06:26:14,428 adding 'vermouth/data/mappings/martini3001/met.charmm36.map' 2023-09-30T06:26:14,429 adding 'vermouth/data/mappings/martini3001/mind.charmm36.map' 2023-09-30T06:26:14,430 adding 'vermouth/data/mappings/martini3001/modifications.amber.mapping' 2023-09-30T06:26:14,431 adding 'vermouth/data/mappings/martini3001/modifications.charmm36.mapping' 2023-09-30T06:26:14,432 adding 'vermouth/data/mappings/martini3001/mxyl.charmm36.map' 2023-09-30T06:26:14,433 adding 'vermouth/data/mappings/martini3001/naft.charmm36.map' 2023-09-30T06:26:14,434 adding 'vermouth/data/mappings/martini3001/nitb.charmm36.map' 2023-09-30T06:26:14,435 adding 'vermouth/data/mappings/martini3001/oxyl.charmm36.map' 2023-09-30T06:26:14,437 adding 'vermouth/data/mappings/martini3001/pcro.charmm36.map' 2023-09-30T06:26:14,438 adding 'vermouth/data/mappings/martini3001/phe.amber.map' 2023-09-30T06:26:14,439 adding 'vermouth/data/mappings/martini3001/phe.charmm36.map' 2023-09-30T06:26:14,440 adding 'vermouth/data/mappings/martini3001/phen.charmm36.map' 2023-09-30T06:26:14,441 adding 'vermouth/data/mappings/martini3001/phmk.charmm36.map' 2023-09-30T06:26:14,442 adding 'vermouth/data/mappings/martini3001/prld.charmm36.map' 2023-09-30T06:26:14,443 adding 'vermouth/data/mappings/martini3001/pro.amber.map' 2023-09-30T06:26:14,445 adding 'vermouth/data/mappings/martini3001/pro.charmm36.map' 2023-09-30T06:26:14,446 adding 'vermouth/data/mappings/martini3001/pxyl.charmm36.map' 2023-09-30T06:26:14,447 adding 'vermouth/data/mappings/martini3001/pyr1.charmm36.map' 2023-09-30T06:26:14,448 adding 'vermouth/data/mappings/martini3001/pyrd.charmm36.map' 2023-09-30T06:26:14,449 adding 'vermouth/data/mappings/martini3001/pyrl.charmm36.map' 2023-09-30T06:26:14,450 adding 'vermouth/data/mappings/martini3001/pyrm.charmm36.map' 2023-09-30T06:26:14,451 adding 'vermouth/data/mappings/martini3001/qinl.charmm36.map' 2023-09-30T06:26:14,452 adding 'vermouth/data/mappings/martini3001/ser.amber.map' 2023-09-30T06:26:14,454 adding 'vermouth/data/mappings/martini3001/ser.charmm36.map' 2023-09-30T06:26:14,455 adding 'vermouth/data/mappings/martini3001/sm139.charmm36.map' 2023-09-30T06:26:14,456 adding 'vermouth/data/mappings/martini3001/styr.charmm36.map' 2023-09-30T06:26:14,457 adding 'vermouth/data/mappings/martini3001/thaz.charmm36.map' 2023-09-30T06:26:14,458 adding 'vermouth/data/mappings/martini3001/thf.charmm36.map' 2023-09-30T06:26:14,459 adding 'vermouth/data/mappings/martini3001/thip.charmm36.map' 2023-09-30T06:26:14,460 adding 'vermouth/data/mappings/martini3001/thp.charmm36.map' 2023-09-30T06:26:14,462 adding 'vermouth/data/mappings/martini3001/thr.amber.map' 2023-09-30T06:26:14,463 adding 'vermouth/data/mappings/martini3001/thr.charmm36.map' 2023-09-30T06:26:14,464 adding 'vermouth/data/mappings/martini3001/tolu.charmm36.map' 2023-09-30T06:26:14,465 adding 'vermouth/data/mappings/martini3001/trp.amber.map' 2023-09-30T06:26:14,466 adding 'vermouth/data/mappings/martini3001/trp.charmm36.map' 2023-09-30T06:26:14,468 adding 'vermouth/data/mappings/martini3001/tyr.amber.map' 2023-09-30T06:26:14,469 adding 'vermouth/data/mappings/martini3001/tyr.charmm36.map' 2023-09-30T06:26:14,470 adding 'vermouth/data/mappings/martini3001/val.amber.map' 2023-09-30T06:26:14,471 adding 'vermouth/data/mappings/martini3001/val.charmm36.map' 2023-09-30T06:26:14,473 adding 'vermouth/data/mappings/martini3001/zimi.charmm36.map' 2023-09-30T06:26:14,474 adding 'vermouth/data/mappings/martini3001/zthp.charmm36.map' 2023-09-30T06:26:14,475 adding 'vermouth/data/mappings/martini3001/zthz.charmm36.map' 2023-09-30T06:26:14,477 adding 'vermouth/data/mappings/martini30b32/ala.charmm36.map' 2023-09-30T06:26:14,478 adding 'vermouth/data/mappings/martini30b32/arg.charmm36.map' 2023-09-30T06:26:14,479 adding 'vermouth/data/mappings/martini30b32/asn.charmm36.map' 2023-09-30T06:26:14,480 adding 'vermouth/data/mappings/martini30b32/asp.charmm36.map' 2023-09-30T06:26:14,481 adding 'vermouth/data/mappings/martini30b32/benz.charmm36.map' 2023-09-30T06:26:14,483 adding 'vermouth/data/mappings/martini30b32/cys.charmm36.map' 2023-09-30T06:26:14,484 adding 'vermouth/data/mappings/martini30b32/gln.charmm36.map' 2023-09-30T06:26:14,485 adding 'vermouth/data/mappings/martini30b32/glu.charmm36.map' 2023-09-30T06:26:14,486 adding 'vermouth/data/mappings/martini30b32/gly.charmm36.map' 2023-09-30T06:26:14,487 adding 'vermouth/data/mappings/martini30b32/his.charmm36.map' 2023-09-30T06:26:14,488 adding 'vermouth/data/mappings/martini30b32/hsd.charmm36.map' 2023-09-30T06:26:14,489 adding 'vermouth/data/mappings/martini30b32/ile.charmm36.map' 2023-09-30T06:26:14,490 adding 'vermouth/data/mappings/martini30b32/leu.charmm36.map' 2023-09-30T06:26:14,492 adding 'vermouth/data/mappings/martini30b32/lys.charmm36.map' 2023-09-30T06:26:14,493 adding 'vermouth/data/mappings/martini30b32/met.charmm36.map' 2023-09-30T06:26:14,494 adding 'vermouth/data/mappings/martini30b32/modifications.mapping' 2023-09-30T06:26:14,495 adding 'vermouth/data/mappings/martini30b32/phe.charmm36.map' 2023-09-30T06:26:14,496 adding 'vermouth/data/mappings/martini30b32/pro.charmm36.map' 2023-09-30T06:26:14,497 adding 'vermouth/data/mappings/martini30b32/ser.charmm36.map' 2023-09-30T06:26:14,499 adding 'vermouth/data/mappings/martini30b32/thr.charmm36.map' 2023-09-30T06:26:14,500 adding 'vermouth/data/mappings/martini30b32/trp.charmm36.map' 2023-09-30T06:26:14,501 adding 'vermouth/data/mappings/martini30b32/tyr.charmm36.map' 2023-09-30T06:26:14,502 adding 'vermouth/data/mappings/martini30b32/val.charmm36.map' 2023-09-30T06:26:14,504 adding 'vermouth/dssp/__init__.py' 2023-09-30T06:26:14,507 adding 'vermouth/dssp/dssp.py' 2023-09-30T06:26:14,509 adding 'vermouth/gmx/__init__.py' 2023-09-30T06:26:14,510 adding 'vermouth/gmx/gro.py' 2023-09-30T06:26:14,513 adding 'vermouth/gmx/itp.py' 2023-09-30T06:26:14,515 adding 'vermouth/gmx/itp_read.py' 2023-09-30T06:26:14,518 adding 'vermouth/gmx/rtp.py' 2023-09-30T06:26:14,521 adding 'vermouth/graphing/grappa.py' 2023-09-30T06:26:14,522 adding 'vermouth/pdb/__init__.py' 2023-09-30T06:26:14,525 adding 'vermouth/pdb/pdb.py' 2023-09-30T06:26:14,527 adding 'vermouth/processors/__init__.py' 2023-09-30T06:26:14,529 adding 'vermouth/processors/add_molecule_edges.py' 2023-09-30T06:26:14,530 adding 'vermouth/processors/annotate_mut_mod.py' 2023-09-30T06:26:14,532 adding 'vermouth/processors/apply_posres.py' 2023-09-30T06:26:14,534 adding 'vermouth/processors/apply_rubber_band.py' 2023-09-30T06:26:14,536 adding 'vermouth/processors/attach_mass.py' 2023-09-30T06:26:14,537 adding 'vermouth/processors/average_beads.py' 2023-09-30T06:26:14,540 adding 'vermouth/processors/canonicalize_modifications.py' 2023-09-30T06:26:14,542 adding 'vermouth/processors/do_links.py' 2023-09-30T06:26:14,547 adding 'vermouth/processors/do_mapping.py' 2023-09-30T06:26:14,549 adding 'vermouth/processors/go_vs_includes.py' 2023-09-30T06:26:14,550 adding 'vermouth/processors/gro_reader.py' 2023-09-30T06:26:14,551 adding 'vermouth/processors/locate_charge_dummies.py' 2023-09-30T06:26:14,554 adding 'vermouth/processors/make_bonds.py' 2023-09-30T06:26:14,555 adding 'vermouth/processors/merge_all_molecules.py' 2023-09-30T06:26:14,557 adding 'vermouth/processors/merge_chains.py' 2023-09-30T06:26:14,558 adding 'vermouth/processors/name_moltype.py' 2023-09-30T06:26:14,559 adding 'vermouth/processors/pdb_reader.py' 2023-09-30T06:26:14,560 adding 'vermouth/processors/processor.py' 2023-09-30T06:26:14,562 adding 'vermouth/processors/quote.py' 2023-09-30T06:26:14,563 adding 'vermouth/processors/rename_modified_residues.py' 2023-09-30T06:26:14,566 adding 'vermouth/processors/repair_graph.py' 2023-09-30T06:26:14,568 adding 'vermouth/processors/set_molecule_meta.py' 2023-09-30T06:26:14,569 adding 'vermouth/processors/sort_molecule_atoms.py' 2023-09-30T06:26:14,571 adding 'vermouth/processors/tune_cystein_bridges.py' 2023-09-30T06:26:14,573 adding 'vermouth/tests/__init__.py' 2023-09-30T06:26:14,574 adding 'vermouth/tests/datafiles.py' 2023-09-30T06:26:14,575 adding 'vermouth/tests/helper_functions.py' 2023-09-30T06:26:14,577 adding 'vermouth/tests/molecule_strategies.py' 2023-09-30T06:26:14,578 adding 'vermouth/tests/test_add_molecule_edges.py' 2023-09-30T06:26:14,580 adding 'vermouth/tests/test_annotate_mut_mod.py' 2023-09-30T06:26:14,582 adding 'vermouth/tests/test_apply_rubber_band.py' 2023-09-30T06:26:14,583 adding 'vermouth/tests/test_average_beads.py' 2023-09-30T06:26:14,586 adding 'vermouth/tests/test_do_mapping.py' 2023-09-30T06:26:14,588 adding 'vermouth/tests/test_dssp.py' 2023-09-30T06:26:14,590 adding 'vermouth/tests/test_edge_tuning.py' 2023-09-30T06:26:14,594 adding 'vermouth/tests/test_ff_files.py' 2023-09-30T06:26:14,597 adding 'vermouth/tests/test_ffinput.py' 2023-09-30T06:26:14,598 adding 'vermouth/tests/test_file_writer.py' 2023-09-30T06:26:14,600 adding 'vermouth/tests/test_forcefield.py' 2023-09-30T06:26:14,602 adding 'vermouth/tests/test_geometry.py' 2023-09-30T06:26:14,603 adding 'vermouth/tests/test_go_vs_includes.py' 2023-09-30T06:26:14,605 adding 'vermouth/tests/test_graph_utils.py' 2023-09-30T06:26:14,607 adding 'vermouth/tests/test_grappa.py' 2023-09-30T06:26:14,609 adding 'vermouth/tests/test_ismags.py' 2023-09-30T06:26:14,611 adding 'vermouth/tests/test_itp_files.py' 2023-09-30T06:26:14,613 adding 'vermouth/tests/test_links.py' 2023-09-30T06:26:14,614 adding 'vermouth/tests/test_logging.py' 2023-09-30T06:26:14,616 adding 'vermouth/tests/test_make_bonds.py' 2023-09-30T06:26:14,618 adding 'vermouth/tests/test_map_input.py' 2023-09-30T06:26:14,621 adding 'vermouth/tests/test_map_parser.py' 2023-09-30T06:26:14,622 adding 'vermouth/tests/test_mapping_integrative.py' 2023-09-30T06:26:14,626 adding 'vermouth/tests/test_molecule.py' 2023-09-30T06:26:14,628 adding 'vermouth/tests/test_name_moltype.py' 2023-09-30T06:26:14,629 adding 'vermouth/tests/test_native_forcefield.py' 2023-09-30T06:26:14,630 adding 'vermouth/tests/test_ptm_detection.py' 2023-09-30T06:26:14,633 adding 'vermouth/tests/test_repair_graph.py' 2023-09-30T06:26:14,634 adding 'vermouth/tests/test_section_parser.py' 2023-09-30T06:26:14,635 adding 'vermouth/tests/test_selectors.py' 2023-09-30T06:26:14,637 adding 'vermouth/tests/test_set_molecule_meta.py' 2023-09-30T06:26:14,638 adding 'vermouth/tests/test_sort_molecule_atoms.py' 2023-09-30T06:26:14,640 adding 'vermouth/tests/test_tune_cystein_bridges.py' 2023-09-30T06:26:14,641 adding 'vermouth/tests/test_utils.py' 2023-09-30T06:26:14,642 adding 'vermouth/tests/test_version.py' 2023-09-30T06:26:14,665 adding 'vermouth/tests/data/1bta.pdb' 2023-09-30T06:26:14,687 adding 'vermouth/tests/data/1bta_mutated.pdb' 2023-09-30T06:26:14,752 adding 'vermouth/tests/data/2QWO.pdb' 2023-09-30T06:26:14,897 adding 'vermouth/tests/data/2dn2.pdb' 2023-09-30T06:26:15,432 adding 'vermouth/tests/data/6E8W.pdb' 2023-09-30T06:26:15,460 adding 'vermouth/tests/data/ala5.pdb' 2023-09-30T06:26:15,461 adding 'vermouth/tests/data/ala5_cg.pdb' 2023-09-30T06:26:15,464 adding 'vermouth/tests/data/dna-short.pdb' 2023-09-30T06:26:15,465 adding 'vermouth/tests/data/heme.pdb' 2023-09-30T06:26:15,466 adding 'vermouth/tests/data/tri_alanine.pdb' 2023-09-30T06:26:15,470 adding 'vermouth/tests/data/dssp_tests/dssp_1bta.ssd' 2023-09-30T06:26:15,473 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-09-30T06:26:15,475 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-09-30T06:26:15,477 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-09-30T06:26:15,479 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-09-30T06:26:15,481 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-09-30T06:26:15,482 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-09-30T06:26:15,485 adding 'vermouth/tests/data/force_fields/martini-test/aminoacids.ff' 2023-09-30T06:26:15,487 adding 'vermouth/tests/data/force_fields/pepplane/ala.ff' 2023-09-30T06:26:15,488 adding 'vermouth/tests/data/force_fields/pepplane/general.ff' 2023-09-30T06:26:15,489 adding 'vermouth/tests/data/force_fields/pepplane/modifications.ff' 2023-09-30T06:26:15,493 adding 'vermouth/tests/data/force_fields/universal-test/aminoacids.rtp' 2023-09-30T06:26:15,494 adding 'vermouth/tests/data/force_fields/universal-test/modifications.ff' 2023-09-30T06:26:15,497 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/README' 2023-09-30T06:26:15,498 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb' 2023-09-30T06:26:15,500 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb' 2023-09-30T06:26:15,501 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation' 2023-09-30T06:26:15,502 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command' 2023-09-30T06:26:15,503 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp' 2023-09-30T06:26:15,505 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top' 2023-09-30T06:26:15,506 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README' 2023-09-30T06:26:15,511 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb' 2023-09-30T06:26:15,514 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb' 2023-09-30T06:26:15,516 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd' 2023-09-30T06:26:15,517 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation' 2023-09-30T06:26:15,518 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command' 2023-09-30T06:26:15,520 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp' 2023-09-30T06:26:15,521 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output' 2023-09-30T06:26:15,522 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top' 2023-09-30T06:26:15,524 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README' 2023-09-30T06:26:15,532 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb' 2023-09-30T06:26:15,535 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb' 2023-09-30T06:26:15,537 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd' 2023-09-30T06:26:15,538 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation' 2023-09-30T06:26:15,539 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command' 2023-09-30T06:26:15,542 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp' 2023-09-30T06:26:15,543 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output' 2023-09-30T06:26:15,544 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top' 2023-09-30T06:26:15,546 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README' 2023-09-30T06:26:15,550 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb' 2023-09-30T06:26:15,552 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb' 2023-09-30T06:26:15,554 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd' 2023-09-30T06:26:15,555 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation' 2023-09-30T06:26:15,556 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command' 2023-09-30T06:26:15,557 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp' 2023-09-30T06:26:15,558 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output' 2023-09-30T06:26:15,559 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top' 2023-09-30T06:26:15,561 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/README' 2023-09-30T06:26:15,626 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb' 2023-09-30T06:26:15,639 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb' 2023-09-30T06:26:15,641 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top' 2023-09-30T06:26:15,651 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd' 2023-09-30T06:26:15,653 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation' 2023-09-30T06:26:15,654 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command' 2023-09-30T06:26:15,674 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp' 2023-09-30T06:26:15,676 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output' 2023-09-30T06:26:15,678 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README' 2023-09-30T06:26:15,741 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb' 2023-09-30T06:26:15,755 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb' 2023-09-30T06:26:15,757 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top' 2023-09-30T06:26:15,767 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd' 2023-09-30T06:26:15,768 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation' 2023-09-30T06:26:15,769 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command' 2023-09-30T06:26:15,789 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp' 2023-09-30T06:26:15,792 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output' 2023-09-30T06:26:15,801 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb' 2023-09-30T06:26:15,802 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/README' 2023-09-30T06:26:15,805 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb' 2023-09-30T06:26:15,807 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top' 2023-09-30T06:26:15,809 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd' 2023-09-30T06:26:15,811 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd' 2023-09-30T06:26:15,813 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation' 2023-09-30T06:26:15,814 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command' 2023-09-30T06:26:15,817 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp' 2023-09-30T06:26:15,820 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp' 2023-09-30T06:26:15,822 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output' 2023-09-30T06:26:15,850 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb' 2023-09-30T06:26:15,853 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README' 2023-09-30T06:26:15,861 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb' 2023-09-30T06:26:15,863 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top' 2023-09-30T06:26:15,865 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd' 2023-09-30T06:26:15,866 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation' 2023-09-30T06:26:15,868 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command' 2023-09-30T06:26:15,884 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp' 2023-09-30T06:26:15,886 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output' 2023-09-30T06:26:15,887 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/README' 2023-09-30T06:26:15,896 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb' 2023-09-30T06:26:15,899 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb' 2023-09-30T06:26:15,900 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top' 2023-09-30T06:26:15,902 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd' 2023-09-30T06:26:15,904 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation' 2023-09-30T06:26:15,905 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command' 2023-09-30T06:26:15,908 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp' 2023-09-30T06:26:15,909 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output' 2023-09-30T06:26:15,911 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/README' 2023-09-30T06:26:15,919 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb' 2023-09-30T06:26:15,922 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb' 2023-09-30T06:26:15,924 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top' 2023-09-30T06:26:15,926 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd' 2023-09-30T06:26:15,927 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation' 2023-09-30T06:26:15,928 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command' 2023-09-30T06:26:15,931 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp' 2023-09-30T06:26:15,933 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output' 2023-09-30T06:26:15,934 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/README' 2023-09-30T06:26:15,944 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb' 2023-09-30T06:26:15,948 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb' 2023-09-30T06:26:15,950 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd' 2023-09-30T06:26:15,953 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation' 2023-09-30T06:26:15,954 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command' 2023-09-30T06:26:15,957 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp' 2023-09-30T06:26:15,959 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output' 2023-09-30T06:26:15,961 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top' 2023-09-30T06:26:15,962 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/README' 2023-09-30T06:26:15,982 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb' 2023-09-30T06:26:15,988 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb' 2023-09-30T06:26:15,993 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd' 2023-09-30T06:26:15,994 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation' 2023-09-30T06:26:15,995 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command' 2023-09-30T06:26:16,002 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp' 2023-09-30T06:26:16,005 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output' 2023-09-30T06:26:16,012 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp' 2023-09-30T06:26:16,014 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top' 2023-09-30T06:26:16,016 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README' 2023-09-30T06:26:16,035 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb' 2023-09-30T06:26:16,040 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb' 2023-09-30T06:26:16,045 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd' 2023-09-30T06:26:16,053 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp' 2023-09-30T06:26:16,055 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top' 2023-09-30T06:26:16,060 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb' 2023-09-30T06:26:16,064 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd' 2023-09-30T06:26:16,066 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation' 2023-09-30T06:26:16,067 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command' 2023-09-30T06:26:16,075 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp' 2023-09-30T06:26:16,077 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output' 2023-09-30T06:26:16,084 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp' 2023-09-30T06:26:16,086 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top' 2023-09-30T06:26:16,087 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README' 2023-09-30T06:26:16,110 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb' 2023-09-30T06:26:16,116 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb' 2023-09-30T06:26:16,118 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top' 2023-09-30T06:26:16,122 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd' 2023-09-30T06:26:16,123 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation' 2023-09-30T06:26:16,125 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command' 2023-09-30T06:26:16,133 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp' 2023-09-30T06:26:16,135 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output' 2023-09-30T06:26:16,136 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top' 2023-09-30T06:26:16,138 adding 'vermouth/tests/data/integration_tests/tier-1/villin/README' 2023-09-30T06:26:16,142 adding 'vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb' 2023-09-30T06:26:16,145 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb' 2023-09-30T06:26:16,146 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation' 2023-09-30T06:26:16,147 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command' 2023-09-30T06:26:16,149 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp' 2023-09-30T06:26:16,150 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output' 2023-09-30T06:26:16,151 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top' 2023-09-30T06:26:16,154 adding 'vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping' 2023-09-30T06:26:16,155 adding 'vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping' 2023-09-30T06:26:16,156 adding 'vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping' 2023-09-30T06:26:16,159 adding 'vermouth/tests/gmx/test_gro.py' 2023-09-30T06:26:16,161 adding 'vermouth/tests/gmx/test_itp.py' 2023-09-30T06:26:16,162 adding 'vermouth/tests/integration_tests/__init__.py' 2023-09-30T06:26:16,164 adding 'vermouth/tests/integration_tests/test_integration.py' 2023-09-30T06:26:16,166 adding 'vermouth/tests/pdb/test_read_pdb.py' 2023-09-30T06:26:16,168 adding 'vermouth/tests/pdb/test_write_pdb.py' 2023-09-30T06:26:16,173 adding 'vermouth-0.9.6.data/scripts/martinize2' 2023-09-30T06:26:16,176 adding 'vermouth-0.9.6.dist-info/LICENSE' 2023-09-30T06:26:16,178 adding 'vermouth-0.9.6.dist-info/METADATA' 2023-09-30T06:26:16,179 adding 'vermouth-0.9.6.dist-info/WHEEL' 2023-09-30T06:26:16,180 adding 'vermouth-0.9.6.dist-info/pbr.json' 2023-09-30T06:26:16,181 adding 'vermouth-0.9.6.dist-info/top_level.txt' 2023-09-30T06:26:16,190 adding 'vermouth-0.9.6.dist-info/RECORD' 2023-09-30T06:26:16,233 removing build/bdist.linux-armv7l/wheel 2023-09-30T06:26:16,490 Building wheel for vermouth (pyproject.toml): finished with status 'done' 2023-09-30T06:26:16,562 Created wheel for vermouth: filename=vermouth-0.9.6-py2.py3-none-any.whl size=2767053 sha256=d8450b9e106940aa63a68b151e6df9efdc4b4826495e4c64cbd076c7b478de08 2023-09-30T06:26:16,563 Stored in directory: /tmp/pip-ephem-wheel-cache-5ke99deu/wheels/14/30/41/216ab8cc3bcfdd1bc01e20b911a9a6ec603f35604f934f82a5 2023-09-30T06:26:16,591 Successfully built vermouth 2023-09-30T06:26:16,659 Removed build tracker: '/tmp/pip-build-tracker-7k3vqme8'