2023-10-01T05:09:17,399 Created temporary directory: /tmp/pip-build-tracker-3qv_956a
2023-10-01T05:09:17,400 Initialized build tracking at /tmp/pip-build-tracker-3qv_956a
2023-10-01T05:09:17,401 Created build tracker: /tmp/pip-build-tracker-3qv_956a
2023-10-01T05:09:17,401 Entered build tracker: /tmp/pip-build-tracker-3qv_956a
2023-10-01T05:09:17,402 Created temporary directory: /tmp/pip-wheel-9rc2qqhb
2023-10-01T05:09:17,405 Created temporary directory: /tmp/pip-ephem-wheel-cache-ct80e6a3
2023-10-01T05:09:17,426 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-01T05:09:17,430 2 location(s) to search for versions of porous-media:
2023-10-01T05:09:17,430 * https://pypi.org/simple/porous-media/
2023-10-01T05:09:17,430 * https://www.piwheels.org/simple/porous-media/
2023-10-01T05:09:17,431 Fetching project page and analyzing links: https://pypi.org/simple/porous-media/
2023-10-01T05:09:17,432 Getting page https://pypi.org/simple/porous-media/
2023-10-01T05:09:17,433 Found index url https://pypi.org/simple/
2023-10-01T05:09:17,688 Fetched page https://pypi.org/simple/porous-media/ as application/vnd.pypi.simple.v1+json
2023-10-01T05:09:17,690   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/8d/aa/23156715fa495249b2758769e4fa2567e7760d8163a52093c07b32cab1f7/porous_media-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,691   Found link https://files.pythonhosted.org/packages/03/ae/895e5a752d9520e0cab951bb55c0cf72a1b030407edf4f68df420e091dbf/porous_media-0.1.0.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.0
2023-10-01T05:09:17,692   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/7a/2b/68bf0447869b0e05a5d80d56fa7e51b643a0361dea2fbeda73da2d2ea5e6/porous_media-0.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,693   Found link https://files.pythonhosted.org/packages/1c/19/afaf97f13a4c6782bfb31883c7bfe177c7ec44e00708fac2c72e570d30b7/porous_media-0.1.1.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.1
2023-10-01T05:09:17,694   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/4e/7f/dd78526e28ad2a7aaef881c6cde3d259c9a6878e5119f7bea051dba2b901/porous_media-0.1.2-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,695   Found link https://files.pythonhosted.org/packages/c6/10/1fb8da0ed29a49642f003f479d058d99b17a25fb39718c8059447e81f19b/porous_media-0.1.2.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.2
2023-10-01T05:09:17,696   Skipping link: No binaries permitted for porous-media: https://files.pythonhosted.org/packages/09/d1/d05f573f6a568b9e5a5b8c312f82b13987a1c09883b2310b71a554660ed2/porous_media-0.1.3-py2.py3-none-any.whl (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,697   Found link https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz (from https://pypi.org/simple/porous-media/) (requires-python:>=3.9), version: 0.1.3
2023-10-01T05:09:17,697 Fetching project page and analyzing links: https://www.piwheels.org/simple/porous-media/
2023-10-01T05:09:17,698 Getting page https://www.piwheels.org/simple/porous-media/
2023-10-01T05:09:17,699 Found index url https://www.piwheels.org/simple/
2023-10-01T05:09:17,862 Fetched page https://www.piwheels.org/simple/porous-media/ as text/html
2023-10-01T05:09:17,864   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.2-py2.py3-none-any.whl#sha256=2e11acfaa8901230a1cbff1cec7bb5c9ad8d629684ba176b9a36ff622fdee90b (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,865   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.1-py2.py3-none-any.whl#sha256=73590dad04a9e67fda010bcf97fe37b17fd0f4c3403cf4e475f9a2c3c2330626 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,866   Skipping link: No binaries permitted for porous-media: https://www.piwheels.org/simple/porous-media/porous_media-0.1.0-py2.py3-none-any.whl#sha256=92ec168e839a0e69eacf0b16c74c0afc9240778d9298a93c919a19459c34dea0 (from https://www.piwheels.org/simple/porous-media/) (requires-python:>=3.9)
2023-10-01T05:09:17,867 Skipping link: not a file: https://www.piwheels.org/simple/porous-media/
2023-10-01T05:09:17,867 Skipping link: not a file: https://pypi.org/simple/porous-media/
2023-10-01T05:09:17,887 Given no hashes to check 1 links for project 'porous-media': discarding no candidates
2023-10-01T05:09:17,906 Collecting porous-media==0.1.3
2023-10-01T05:09:17,909   Created temporary directory: /tmp/pip-unpack-sogmnhvw
2023-10-01T05:09:18,048   Downloading porous_media-0.1.3.tar.gz (967 kB)
2023-10-01T05:09:18,368   Added porous-media==0.1.3 from https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-3qv_956a'
2023-10-01T05:09:18,370   Running setup.py (path:/tmp/pip-wheel-9rc2qqhb/porous-media_36fb6dc6097b47ffa329f3a5f67585bc/setup.py) egg_info for package porous-media
2023-10-01T05:09:18,371   Created temporary directory: /tmp/pip-pip-egg-info-04t8iiul
2023-10-01T05:09:18,372   Preparing metadata (setup.py): started
2023-10-01T05:09:18,374   Running command python setup.py egg_info
2023-10-01T05:09:19,594   running egg_info
2023-10-01T05:09:19,595   creating /tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info
2023-10-01T05:09:19,619   writing /tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/PKG-INFO
2023-10-01T05:09:19,628   writing dependency_links to /tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/dependency_links.txt
2023-10-01T05:09:19,632   writing requirements to /tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/requires.txt
2023-10-01T05:09:19,633   writing top-level names to /tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/top_level.txt
2023-10-01T05:09:19,634   writing manifest file '/tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/SOURCES.txt'
2023-10-01T05:09:19,715   reading manifest file '/tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/SOURCES.txt'
2023-10-01T05:09:19,716   reading manifest template 'MANIFEST.in'
2023-10-01T05:09:19,736   adding license file 'LICENSE'
2023-10-01T05:09:19,739   writing manifest file '/tmp/pip-pip-egg-info-04t8iiul/porous_media.egg-info/SOURCES.txt'
2023-10-01T05:09:19,851   Preparing metadata (setup.py): finished with status 'done'
2023-10-01T05:09:19,855   Source in /tmp/pip-wheel-9rc2qqhb/porous-media_36fb6dc6097b47ffa329f3a5f67585bc has version 0.1.3, which satisfies requirement porous-media==0.1.3 from https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz
2023-10-01T05:09:19,856   Removed porous-media==0.1.3 from https://files.pythonhosted.org/packages/12/37/9300f1927b7193000a0808c54e609207a5b6e48a7cb6dcadb727fd0d5eab/porous_media-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-3qv_956a'
2023-10-01T05:09:19,862 Created temporary directory: /tmp/pip-unpack-ryl8lj_4
2023-10-01T05:09:19,864 Created temporary directory: /tmp/pip-unpack-85qf26pl
2023-10-01T05:09:19,911 Building wheels for collected packages: porous-media
2023-10-01T05:09:19,916   Created temporary directory: /tmp/pip-wheel-61_hzqhx
2023-10-01T05:09:19,916   Building wheel for porous-media (setup.py): started
2023-10-01T05:09:19,918   Destination directory: /tmp/pip-wheel-61_hzqhx
2023-10-01T05:09:19,918   Running command python setup.py bdist_wheel
2023-10-01T05:09:21,095   running bdist_wheel
2023-10-01T05:09:21,224   running build
2023-10-01T05:09:21,224   running build_py
2023-10-01T05:09:21,251   creating build
2023-10-01T05:09:21,252   creating build/lib
2023-10-01T05:09:21,253   creating build/lib/porous_media
2023-10-01T05:09:21,254   copying src/porous_media/__init__.py -> build/lib/porous_media
2023-10-01T05:09:21,256   copying src/porous_media/log.py -> build/lib/porous_media
2023-10-01T05:09:21,257   copying src/porous_media/console.py -> build/lib/porous_media
2023-10-01T05:09:21,259   creating build/lib/porous_media/mesh
2023-10-01T05:09:21,260   copying src/porous_media/mesh/__init__.py -> build/lib/porous_media/mesh
2023-10-01T05:09:21,262   copying src/porous_media/mesh/mesh_zonation.py -> build/lib/porous_media/mesh
2023-10-01T05:09:21,264   copying src/porous_media/mesh/mesh_tools.py -> build/lib/porous_media/mesh
2023-10-01T05:09:21,266   creating build/lib/porous_media/febio
2023-10-01T05:09:21,267   copying src/porous_media/febio/febio_manipulation.py -> build/lib/porous_media/febio
2023-10-01T05:09:21,268   copying src/porous_media/febio/__init__.py -> build/lib/porous_media/febio
2023-10-01T05:09:21,270   creating build/lib/porous_media/analyses
2023-10-01T05:09:21,271   copying src/porous_media/analyses/__init__.py -> build/lib/porous_media/analyses
2023-10-01T05:09:21,273   copying src/porous_media/analyses/liver_variables.py -> build/lib/porous_media/analyses
2023-10-01T05:09:21,275   creating build/lib/porous_media/visualization
2023-10-01T05:09:21,276   copying src/porous_media/visualization/video.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,277   copying src/porous_media/visualization/__init__.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,279   copying src/porous_media/visualization/pyvista_visualization.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,281   copying src/porous_media/visualization/plots.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,283   copying src/porous_media/visualization/image_annotation.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,285   copying src/porous_media/visualization/image_manipulation.py -> build/lib/porous_media/visualization
2023-10-01T05:09:21,287   creating build/lib/porous_media/data
2023-10-01T05:09:21,288   copying src/porous_media/data/__init__.py -> build/lib/porous_media/data
2023-10-01T05:09:21,289   copying src/porous_media/data/xdmf_tools.py -> build/lib/porous_media/data
2023-10-01T05:09:21,291   copying src/porous_media/data/xdmf_calculations.py -> build/lib/porous_media/data
2023-10-01T05:09:21,294   creating build/lib/porous_media/analyses/simliva
2023-10-01T05:09:21,295   copying src/porous_media/analyses/simliva/__init__.py -> build/lib/porous_media/analyses/simliva
2023-10-01T05:09:21,296   copying src/porous_media/analyses/simliva/simliva_example.py -> build/lib/porous_media/analyses/simliva
2023-10-01T05:09:21,298   creating build/lib/porous_media/analyses/spt
2023-10-01T05:09:21,299   copying src/porous_media/analyses/spt/spt_zonation_patterns.py -> build/lib/porous_media/analyses/spt
2023-10-01T05:09:21,301   copying src/porous_media/analyses/spt/__init__.py -> build/lib/porous_media/analyses/spt
2023-10-01T05:09:21,303   copying src/porous_media/analyses/spt/spt_substrate_scan.py -> build/lib/porous_media/analyses/spt
2023-10-01T05:09:21,305   copying src/porous_media/analyses/spt/spt_zonation_patterns_plot2d.py -> build/lib/porous_media/analyses/spt
2023-10-01T05:09:21,307   creating build/lib/porous_media/analyses/examples
2023-10-01T05:09:21,308   copying src/porous_media/analyses/examples/groups.py -> build/lib/porous_media/analyses/examples
2023-10-01T05:09:21,310   copying src/porous_media/analyses/examples/__init__.py -> build/lib/porous_media/analyses/examples
2023-10-01T05:09:21,311   running egg_info
2023-10-01T05:09:21,336   writing src/porous_media.egg-info/PKG-INFO
2023-10-01T05:09:21,344   writing dependency_links to src/porous_media.egg-info/dependency_links.txt
2023-10-01T05:09:21,349   writing requirements to src/porous_media.egg-info/requires.txt
2023-10-01T05:09:21,350   writing top-level names to src/porous_media.egg-info/top_level.txt
2023-10-01T05:09:21,382   reading manifest file 'src/porous_media.egg-info/SOURCES.txt'
2023-10-01T05:09:21,385   reading manifest template 'MANIFEST.in'
2023-10-01T05:09:21,403   adding license file 'LICENSE'
2023-10-01T05:09:21,407   writing manifest file 'src/porous_media.egg-info/SOURCES.txt'
2023-10-01T05:09:21,410   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'porous_media.resources.images' is absent from the `packages` configuration.
2023-10-01T05:09:21,410   !!

2023-10-01T05:09:21,411           ********************************************************************************
2023-10-01T05:09:21,411           ############################
2023-10-01T05:09:21,412           # Package would be ignored #
2023-10-01T05:09:21,412           ############################
2023-10-01T05:09:21,413           Python recognizes 'porous_media.resources.images' as an importable package[^1],
2023-10-01T05:09:21,413           but it is absent from setuptools' `packages` configuration.

2023-10-01T05:09:21,414           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-01T05:09:21,414           package, please make sure that 'porous_media.resources.images' is explicitly added
2023-10-01T05:09:21,415           to the `packages` configuration field.

2023-10-01T05:09:21,416           Alternatively, you can also rely on setuptools' discovery methods
2023-10-01T05:09:21,416           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-01T05:09:21,417           instead of `find_packages(...)`/`find:`).

2023-10-01T05:09:21,418           You can read more about "package discovery" on setuptools documentation page:

2023-10-01T05:09:21,419           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-01T05:09:21,420           If you don't want 'porous_media.resources.images' to be distributed and are
2023-10-01T05:09:21,424           already explicitly excluding 'porous_media.resources.images' via
2023-10-01T05:09:21,424           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-01T05:09:21,425           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-01T05:09:21,425           combination with a more fine grained `package-data` configuration.

2023-10-01T05:09:21,426           You can read more about "package data files" on setuptools documentation page:

2023-10-01T05:09:21,427           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-01T05:09:21,429           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-01T05:09:21,429                 even if it does not contain any `.py` files.
2023-10-01T05:09:21,430                 On the other hand, currently there is no concept of package data
2023-10-01T05:09:21,431                 directory, all directories are treated like packages.
2023-10-01T05:09:21,432           ********************************************************************************

2023-10-01T05:09:21,435   !!
2023-10-01T05:09:21,436     check.warn(importable)
2023-10-01T05:09:21,437   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'porous_media.resources.vtk.vtk_single' is absent from the `packages` configuration.
2023-10-01T05:09:21,437   !!

2023-10-01T05:09:21,438           ********************************************************************************
2023-10-01T05:09:21,439           ############################
2023-10-01T05:09:21,439           # Package would be ignored #
2023-10-01T05:09:21,440           ############################
2023-10-01T05:09:21,440           Python recognizes 'porous_media.resources.vtk.vtk_single' as an importable package[^1],
2023-10-01T05:09:21,441           but it is absent from setuptools' `packages` configuration.

2023-10-01T05:09:21,443           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-01T05:09:21,444           package, please make sure that 'porous_media.resources.vtk.vtk_single' is explicitly added
2023-10-01T05:09:21,444           to the `packages` configuration field.

2023-10-01T05:09:21,446           Alternatively, you can also rely on setuptools' discovery methods
2023-10-01T05:09:21,446           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-01T05:09:21,448           instead of `find_packages(...)`/`find:`).

2023-10-01T05:09:21,453           You can read more about "package discovery" on setuptools documentation page:

2023-10-01T05:09:21,454           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-01T05:09:21,455           If you don't want 'porous_media.resources.vtk.vtk_single' to be distributed and are
2023-10-01T05:09:21,455           already explicitly excluding 'porous_media.resources.vtk.vtk_single' via
2023-10-01T05:09:21,456           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-01T05:09:21,456           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-01T05:09:21,456           combination with a more fine grained `package-data` configuration.

2023-10-01T05:09:21,457           You can read more about "package data files" on setuptools documentation page:

2023-10-01T05:09:21,462           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-01T05:09:21,464           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-01T05:09:21,464                 even if it does not contain any `.py` files.
2023-10-01T05:09:21,464                 On the other hand, currently there is no concept of package data
2023-10-01T05:09:21,465                 directory, all directories are treated like packages.
2023-10-01T05:09:21,465           ********************************************************************************

2023-10-01T05:09:21,467   !!
2023-10-01T05:09:21,467     check.warn(importable)
2023-10-01T05:09:21,468   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'porous_media.resources.vtk.vtk_timecourse' is absent from the `packages` configuration.
2023-10-01T05:09:21,468   !!

2023-10-01T05:09:21,471           ********************************************************************************
2023-10-01T05:09:21,471           ############################
2023-10-01T05:09:21,472           # Package would be ignored #
2023-10-01T05:09:21,472           ############################
2023-10-01T05:09:21,473           Python recognizes 'porous_media.resources.vtk.vtk_timecourse' as an importable package[^1],
2023-10-01T05:09:21,474           but it is absent from setuptools' `packages` configuration.

2023-10-01T05:09:21,475           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-01T05:09:21,476           package, please make sure that 'porous_media.resources.vtk.vtk_timecourse' is explicitly added
2023-10-01T05:09:21,476           to the `packages` configuration field.

2023-10-01T05:09:21,480           Alternatively, you can also rely on setuptools' discovery methods
2023-10-01T05:09:21,481           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-01T05:09:21,481           instead of `find_packages(...)`/`find:`).

2023-10-01T05:09:21,482           You can read more about "package discovery" on setuptools documentation page:

2023-10-01T05:09:21,484           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-01T05:09:21,485           If you don't want 'porous_media.resources.vtk.vtk_timecourse' to be distributed and are
2023-10-01T05:09:21,486           already explicitly excluding 'porous_media.resources.vtk.vtk_timecourse' via
2023-10-01T05:09:21,486           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-01T05:09:21,487           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-01T05:09:21,487           combination with a more fine grained `package-data` configuration.

2023-10-01T05:09:21,489           You can read more about "package data files" on setuptools documentation page:

2023-10-01T05:09:21,490           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-01T05:09:21,492           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-01T05:09:21,492                 even if it does not contain any `.py` files.
2023-10-01T05:09:21,493                 On the other hand, currently there is no concept of package data
2023-10-01T05:09:21,493                 directory, all directories are treated like packages.
2023-10-01T05:09:21,494           ********************************************************************************

2023-10-01T05:09:21,495   !!
2023-10-01T05:09:21,497     check.warn(importable)
2023-10-01T05:09:21,497   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'porous_media.resources.zonation' is absent from the `packages` configuration.
2023-10-01T05:09:21,497   !!

2023-10-01T05:09:21,498           ********************************************************************************
2023-10-01T05:09:21,499           ############################
2023-10-01T05:09:21,499           # Package would be ignored #
2023-10-01T05:09:21,500           ############################
2023-10-01T05:09:21,501           Python recognizes 'porous_media.resources.zonation' as an importable package[^1],
2023-10-01T05:09:21,501           but it is absent from setuptools' `packages` configuration.

2023-10-01T05:09:21,502           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-01T05:09:21,503           package, please make sure that 'porous_media.resources.zonation' is explicitly added
2023-10-01T05:09:21,503           to the `packages` configuration field.

2023-10-01T05:09:21,504           Alternatively, you can also rely on setuptools' discovery methods
2023-10-01T05:09:21,505           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-01T05:09:21,506           instead of `find_packages(...)`/`find:`).

2023-10-01T05:09:21,507           You can read more about "package discovery" on setuptools documentation page:

2023-10-01T05:09:21,509           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-01T05:09:21,510           If you don't want 'porous_media.resources.zonation' to be distributed and are
2023-10-01T05:09:21,510           already explicitly excluding 'porous_media.resources.zonation' via
2023-10-01T05:09:21,511           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-01T05:09:21,512           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-01T05:09:21,512           combination with a more fine grained `package-data` configuration.

2023-10-01T05:09:21,514           You can read more about "package data files" on setuptools documentation page:

2023-10-01T05:09:21,514           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-01T05:09:21,516           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-01T05:09:21,517                 even if it does not contain any `.py` files.
2023-10-01T05:09:21,518                 On the other hand, currently there is no concept of package data
2023-10-01T05:09:21,518                 directory, all directories are treated like packages.
2023-10-01T05:09:21,519           ********************************************************************************

2023-10-01T05:09:21,520   !!
2023-10-01T05:09:21,521     check.warn(importable)
2023-10-01T05:09:21,522   copying src/porous_media/py.typed -> build/lib/porous_media
2023-10-01T05:09:21,522   creating build/lib/porous_media/resources
2023-10-01T05:09:21,523   creating build/lib/porous_media/resources/images
2023-10-01T05:09:21,524   copying src/porous_media/resources/images/mesh_zonation.png -> build/lib/porous_media/resources/images
2023-10-01T05:09:21,524   creating build/lib/porous_media/resources/vtk
2023-10-01T05:09:21,525   creating build/lib/porous_media/resources/vtk/vtk_single
2023-10-01T05:09:21,525   copying src/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_single
2023-10-01T05:09:21,526   creating build/lib/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,526   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,527   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,527   copying src/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/lib/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,528   creating build/lib/porous_media/resources/zonation
2023-10-01T05:09:21,528   copying src/porous_media/resources/zonation/mesh_zonation.h5 -> build/lib/porous_media/resources/zonation
2023-10-01T05:09:21,529   copying src/porous_media/resources/zonation/mesh_zonation.vtk -> build/lib/porous_media/resources/zonation
2023-10-01T05:09:21,529   copying src/porous_media/resources/zonation/mesh_zonation.xdmf -> build/lib/porous_media/resources/zonation
2023-10-01T05:09:21,529   copying src/porous_media/data/flow_dependency.png -> build/lib/porous_media/data
2023-10-01T05:09:21,539   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-01T05:09:21,540   !!

2023-10-01T05:09:21,541           ********************************************************************************
2023-10-01T05:09:21,542           Please avoid running ``setup.py`` directly.
2023-10-01T05:09:21,542           Instead, use pypa/build, pypa/installer or other
2023-10-01T05:09:21,543           standards-based tools.

2023-10-01T05:09:21,544           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-01T05:09:21,544           ********************************************************************************

2023-10-01T05:09:21,545   !!
2023-10-01T05:09:21,546     self.initialize_options()
2023-10-01T05:09:21,567   installing to build/bdist.linux-armv7l/wheel
2023-10-01T05:09:21,567   running install
2023-10-01T05:09:21,591   running install_lib
2023-10-01T05:09:21,617   creating build/bdist.linux-armv7l
2023-10-01T05:09:21,617   creating build/bdist.linux-armv7l/wheel
2023-10-01T05:09:21,619   creating build/bdist.linux-armv7l/wheel/porous_media
2023-10-01T05:09:21,620   copying build/lib/porous_media/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media
2023-10-01T05:09:21,622   creating build/bdist.linux-armv7l/wheel/porous_media/mesh
2023-10-01T05:09:21,623   copying build/lib/porous_media/mesh/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2023-10-01T05:09:21,625   copying build/lib/porous_media/mesh/mesh_zonation.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2023-10-01T05:09:21,627   copying build/lib/porous_media/mesh/mesh_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/mesh
2023-10-01T05:09:21,629   creating build/bdist.linux-armv7l/wheel/porous_media/febio
2023-10-01T05:09:21,630   copying build/lib/porous_media/febio/febio_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2023-10-01T05:09:21,632   copying build/lib/porous_media/febio/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/febio
2023-10-01T05:09:21,634   copying build/lib/porous_media/log.py -> build/bdist.linux-armv7l/wheel/porous_media
2023-10-01T05:09:21,635   copying build/lib/porous_media/console.py -> build/bdist.linux-armv7l/wheel/porous_media
2023-10-01T05:09:21,637   copying build/lib/porous_media/py.typed -> build/bdist.linux-armv7l/wheel/porous_media
2023-10-01T05:09:21,639   creating build/bdist.linux-armv7l/wheel/porous_media/resources
2023-10-01T05:09:21,640   creating build/bdist.linux-armv7l/wheel/porous_media/resources/images
2023-10-01T05:09:21,641   copying build/lib/porous_media/resources/images/mesh_zonation.png -> build/bdist.linux-armv7l/wheel/porous_media/resources/images
2023-10-01T05:09:21,649   creating build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2023-10-01T05:09:21,650   copying build/lib/porous_media/resources/zonation/mesh_zonation.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2023-10-01T05:09:21,653   copying build/lib/porous_media/resources/zonation/mesh_zonation.xdmf -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2023-10-01T05:09:21,655   copying build/lib/porous_media/resources/zonation/mesh_zonation.h5 -> build/bdist.linux-armv7l/wheel/porous_media/resources/zonation
2023-10-01T05:09:21,658   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk
2023-10-01T05:09:21,659   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2023-10-01T05:09:21,660   copying build/lib/porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_single
2023-10-01T05:09:21,672   creating build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,673   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,684   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,693   copying build/lib/porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk -> build/bdist.linux-armv7l/wheel/porous_media/resources/vtk/vtk_timecourse
2023-10-01T05:09:21,699   creating build/bdist.linux-armv7l/wheel/porous_media/analyses
2023-10-01T05:09:21,700   copying build/lib/porous_media/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2023-10-01T05:09:21,702   copying build/lib/porous_media/analyses/liver_variables.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses
2023-10-01T05:09:21,704   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2023-10-01T05:09:21,705   copying build/lib/porous_media/analyses/simliva/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2023-10-01T05:09:21,706   copying build/lib/porous_media/analyses/simliva/simliva_example.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/simliva
2023-10-01T05:09:21,708   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2023-10-01T05:09:21,709   copying build/lib/porous_media/analyses/spt/spt_zonation_patterns.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2023-10-01T05:09:21,711   copying build/lib/porous_media/analyses/spt/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2023-10-01T05:09:21,712   copying build/lib/porous_media/analyses/spt/spt_substrate_scan.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2023-10-01T05:09:21,715   copying build/lib/porous_media/analyses/spt/spt_zonation_patterns_plot2d.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/spt
2023-10-01T05:09:21,717   creating build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2023-10-01T05:09:21,718   copying build/lib/porous_media/analyses/examples/groups.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2023-10-01T05:09:21,720   copying build/lib/porous_media/analyses/examples/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/analyses/examples
2023-10-01T05:09:21,721   creating build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,723   copying build/lib/porous_media/visualization/video.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,724   copying build/lib/porous_media/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,726   copying build/lib/porous_media/visualization/pyvista_visualization.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,728   copying build/lib/porous_media/visualization/plots.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,730   copying build/lib/porous_media/visualization/image_annotation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,731   copying build/lib/porous_media/visualization/image_manipulation.py -> build/bdist.linux-armv7l/wheel/porous_media/visualization
2023-10-01T05:09:21,733   creating build/bdist.linux-armv7l/wheel/porous_media/data
2023-10-01T05:09:21,734   copying build/lib/porous_media/data/__init__.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2023-10-01T05:09:21,735   copying build/lib/porous_media/data/xdmf_tools.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2023-10-01T05:09:21,738   copying build/lib/porous_media/data/xdmf_calculations.py -> build/bdist.linux-armv7l/wheel/porous_media/data
2023-10-01T05:09:21,739   copying build/lib/porous_media/data/flow_dependency.png -> build/bdist.linux-armv7l/wheel/porous_media/data
2023-10-01T05:09:21,745   running install_egg_info
2023-10-01T05:09:21,776   Copying src/porous_media.egg-info to build/bdist.linux-armv7l/wheel/porous_media-0.1.3-py3.11.egg-info
2023-10-01T05:09:21,787   running install_scripts
2023-10-01T05:09:21,808   creating build/bdist.linux-armv7l/wheel/porous_media-0.1.3.dist-info/WHEEL
2023-10-01T05:09:21,810   creating '/tmp/pip-wheel-61_hzqhx/porous_media-0.1.3-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-01T05:09:21,812   adding 'porous_media/__init__.py'
2023-10-01T05:09:21,814   adding 'porous_media/console.py'
2023-10-01T05:09:21,815   adding 'porous_media/log.py'
2023-10-01T05:09:21,816   adding 'porous_media/py.typed'
2023-10-01T05:09:21,818   adding 'porous_media/analyses/__init__.py'
2023-10-01T05:09:21,819   adding 'porous_media/analyses/liver_variables.py'
2023-10-01T05:09:21,821   adding 'porous_media/analyses/examples/__init__.py'
2023-10-01T05:09:21,822   adding 'porous_media/analyses/examples/groups.py'
2023-10-01T05:09:21,824   adding 'porous_media/analyses/simliva/__init__.py'
2023-10-01T05:09:21,825   adding 'porous_media/analyses/simliva/simliva_example.py'
2023-10-01T05:09:21,827   adding 'porous_media/analyses/spt/__init__.py'
2023-10-01T05:09:21,828   adding 'porous_media/analyses/spt/spt_substrate_scan.py'
2023-10-01T05:09:21,829   adding 'porous_media/analyses/spt/spt_zonation_patterns.py'
2023-10-01T05:09:21,831   adding 'porous_media/analyses/spt/spt_zonation_patterns_plot2d.py'
2023-10-01T05:09:21,832   adding 'porous_media/data/__init__.py'
2023-10-01T05:09:21,857   adding 'porous_media/data/flow_dependency.png'
2023-10-01T05:09:21,860   adding 'porous_media/data/xdmf_calculations.py'
2023-10-01T05:09:21,863   adding 'porous_media/data/xdmf_tools.py'
2023-10-01T05:09:21,864   adding 'porous_media/febio/__init__.py'
2023-10-01T05:09:21,866   adding 'porous_media/febio/febio_manipulation.py'
2023-10-01T05:09:21,867   adding 'porous_media/mesh/__init__.py'
2023-10-01T05:09:21,868   adding 'porous_media/mesh/mesh_tools.py'
2023-10-01T05:09:21,870   adding 'porous_media/mesh/mesh_zonation.py'
2023-10-01T05:09:21,910   adding 'porous_media/resources/images/mesh_zonation.png'
2023-10-01T05:09:21,997   adding 'porous_media/resources/vtk/vtk_single/lobule_zonation_pattern.t0022.vtk'
2023-10-01T05:09:22,022   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0000.vtk'
2023-10-01T05:09:22,130   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0008.vtk'
2023-10-01T05:09:22,215   adding 'porous_media/resources/vtk/vtk_timecourse/lobule_zonation_pattern.t0022.vtk'
2023-10-01T05:09:22,222   adding 'porous_media/resources/zonation/mesh_zonation.h5'
2023-10-01T05:09:22,232   adding 'porous_media/resources/zonation/mesh_zonation.vtk'
2023-10-01T05:09:22,233   adding 'porous_media/resources/zonation/mesh_zonation.xdmf'
2023-10-01T05:09:22,235   adding 'porous_media/visualization/__init__.py'
2023-10-01T05:09:22,236   adding 'porous_media/visualization/image_annotation.py'
2023-10-01T05:09:22,237   adding 'porous_media/visualization/image_manipulation.py'
2023-10-01T05:09:22,238   adding 'porous_media/visualization/plots.py'
2023-10-01T05:09:22,240   adding 'porous_media/visualization/pyvista_visualization.py'
2023-10-01T05:09:22,242   adding 'porous_media/visualization/video.py'
2023-10-01T05:09:22,244   adding 'porous_media-0.1.3.dist-info/LICENSE'
2023-10-01T05:09:22,246   adding 'porous_media-0.1.3.dist-info/METADATA'
2023-10-01T05:09:22,247   adding 'porous_media-0.1.3.dist-info/WHEEL'
2023-10-01T05:09:22,247   adding 'porous_media-0.1.3.dist-info/top_level.txt'
2023-10-01T05:09:22,248   adding 'porous_media-0.1.3.dist-info/zip-safe'
2023-10-01T05:09:22,249   adding 'porous_media-0.1.3.dist-info/RECORD'
2023-10-01T05:09:22,262   removing build/bdist.linux-armv7l/wheel
2023-10-01T05:09:22,391   Building wheel for porous-media (setup.py): finished with status 'done'
2023-10-01T05:09:22,405   Created wheel for porous-media: filename=porous_media-0.1.3-py2.py3-none-any.whl size=969454 sha256=da500be3d674cd26bb4400cda802088fd4e1361080a4be1a2e2f525bd050aec3
2023-10-01T05:09:22,406   Stored in directory: /tmp/pip-ephem-wheel-cache-ct80e6a3/wheels/ec/eb/07/e97845b14305220bfb9533559f78907a680092de2b7a1895f9
2023-10-01T05:09:22,418 Successfully built porous-media
2023-10-01T05:09:22,443 Removed build tracker: '/tmp/pip-build-tracker-3qv_956a'