2023-10-01T10:34:28,525 Created temporary directory: /tmp/pip-build-tracker-ajsvmqb2 2023-10-01T10:34:28,526 Initialized build tracking at /tmp/pip-build-tracker-ajsvmqb2 2023-10-01T10:34:28,526 Created build tracker: /tmp/pip-build-tracker-ajsvmqb2 2023-10-01T10:34:28,527 Entered build tracker: /tmp/pip-build-tracker-ajsvmqb2 2023-10-01T10:34:28,528 Created temporary directory: /tmp/pip-wheel-29w4v5gd 2023-10-01T10:34:28,531 Created temporary directory: /tmp/pip-ephem-wheel-cache-xhjd5p6v 2023-10-01T10:34:28,553 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T10:34:28,557 2 location(s) to search for versions of singlem: 2023-10-01T10:34:28,557 * https://pypi.org/simple/singlem/ 2023-10-01T10:34:28,557 * https://www.piwheels.org/simple/singlem/ 2023-10-01T10:34:28,557 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2023-10-01T10:34:28,558 Getting page https://pypi.org/simple/singlem/ 2023-10-01T10:34:28,560 Found index url https://pypi.org/simple/ 2023-10-01T10:34:28,811 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2023-10-01T10:34:28,815 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2023-10-01T10:34:28,816 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2023-10-01T10:34:28,817 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2023-10-01T10:34:28,818 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2023-10-01T10:34:28,818 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2023-10-01T10:34:28,819 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2023-10-01T10:34:28,820 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2023-10-01T10:34:28,821 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2023-10-01T10:34:28,821 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:34:28,822 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2023-10-01T10:34:28,823 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:34:28,823 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2023-10-01T10:34:28,824 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:34:28,825 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2023-10-01T10:34:28,826 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:34:28,826 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2023-10-01T10:34:28,827 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:34:28,827 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2023-10-01T10:34:28,828 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2023-10-01T10:34:28,829 Getting page https://www.piwheels.org/simple/singlem/ 2023-10-01T10:34:28,830 Found index url https://www.piwheels.org/simple/ 2023-10-01T10:34:28,989 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2023-10-01T10:34:28,992 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,992 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,993 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,994 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,994 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,995 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,996 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:34:28,996 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2023-10-01T10:34:28,997 Skipping link: not a file: https://pypi.org/simple/singlem/ 2023-10-01T10:34:29,018 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2023-10-01T10:34:29,038 Collecting singlem==1.0.0b8 2023-10-01T10:34:29,040 Created temporary directory: /tmp/pip-unpack-anudlpjq 2023-10-01T10:34:29,258 Downloading singlem-1.0.0b8.tar.gz (170 kB) 2023-10-01T10:34:29,485 Added singlem==1.0.0b8 from https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz to build tracker '/tmp/pip-build-tracker-ajsvmqb2' 2023-10-01T10:34:29,487 Running setup.py (path:/tmp/pip-wheel-29w4v5gd/singlem_fe979c367c2f45d6865d90da4bf07aec/setup.py) egg_info for package singlem 2023-10-01T10:34:29,488 Created temporary directory: /tmp/pip-pip-egg-info-ark13vk9 2023-10-01T10:34:29,489 Preparing metadata (setup.py): started 2023-10-01T10:34:29,490 Running command python setup.py egg_info 2023-10-01T10:34:30,542 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing '1.0.0beta8' to '1.0.0b8' 2023-10-01T10:34:30,542 self.metadata.version = self._normalize_version( 2023-10-01T10:34:30,583 running egg_info 2023-10-01T10:34:30,584 creating /tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info 2023-10-01T10:34:30,610 writing /tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/PKG-INFO 2023-10-01T10:34:30,613 writing dependency_links to /tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/dependency_links.txt 2023-10-01T10:34:30,615 writing requirements to /tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/requires.txt 2023-10-01T10:34:30,616 writing top-level names to /tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/top_level.txt 2023-10-01T10:34:30,617 writing manifest file '/tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/SOURCES.txt' 2023-10-01T10:34:30,728 reading manifest file '/tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/SOURCES.txt' 2023-10-01T10:34:30,729 reading manifest template 'MANIFEST.in' 2023-10-01T10:34:30,730 warning: no files found matching 'LICENSE' 2023-10-01T10:34:30,731 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T10:34:30,732 adding license file 'LICENCE.txt' 2023-10-01T10:34:30,734 writing manifest file '/tmp/pip-pip-egg-info-ark13vk9/singlem.egg-info/SOURCES.txt' 2023-10-01T10:34:30,846 Preparing metadata (setup.py): finished with status 'done' 2023-10-01T10:34:30,850 Source in /tmp/pip-wheel-29w4v5gd/singlem_fe979c367c2f45d6865d90da4bf07aec has version 1.0.0b8, which satisfies requirement singlem==1.0.0b8 from https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz 2023-10-01T10:34:30,851 Removed singlem==1.0.0b8 from https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz from build tracker '/tmp/pip-build-tracker-ajsvmqb2' 2023-10-01T10:34:30,856 Created temporary directory: /tmp/pip-unpack-gcr6yiic 2023-10-01T10:34:30,857 Created temporary directory: /tmp/pip-unpack-41ypb2p3 2023-10-01T10:34:30,873 Building wheels for collected packages: singlem 2023-10-01T10:34:30,878 Created temporary directory: /tmp/pip-wheel-tzrsbwnv 2023-10-01T10:34:30,878 Building wheel for singlem (setup.py): started 2023-10-01T10:34:30,880 Destination directory: /tmp/pip-wheel-tzrsbwnv 2023-10-01T10:34:30,880 Running command python setup.py bdist_wheel 2023-10-01T10:34:31,854 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing '1.0.0beta8' to '1.0.0b8' 2023-10-01T10:34:31,854 self.metadata.version = self._normalize_version( 2023-10-01T10:34:31,889 running bdist_wheel 2023-10-01T10:34:32,019 running build 2023-10-01T10:34:32,020 running build_py 2023-10-01T10:34:32,049 creating build 2023-10-01T10:34:32,050 creating build/lib 2023-10-01T10:34:32,050 creating build/lib/singlem 2023-10-01T10:34:32,052 copying singlem/archive_otu_table.py -> build/lib/singlem 2023-10-01T10:34:32,054 copying singlem/graftm_result.py -> build/lib/singlem 2023-10-01T10:34:32,056 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2023-10-01T10:34:32,058 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2023-10-01T10:34:32,060 copying singlem/singlem.py -> build/lib/singlem 2023-10-01T10:34:32,062 copying singlem/package_creator.py -> build/lib/singlem 2023-10-01T10:34:32,064 copying singlem/condense.py -> build/lib/singlem 2023-10-01T10:34:32,067 copying singlem/otu_table_entry.py -> build/lib/singlem 2023-10-01T10:34:32,069 copying singlem/querier.py -> build/lib/singlem 2023-10-01T10:34:32,072 copying singlem/read_fraction.py -> build/lib/singlem 2023-10-01T10:34:32,074 copying singlem/supplement.py -> build/lib/singlem 2023-10-01T10:34:32,077 copying singlem/renew.py -> build/lib/singlem 2023-10-01T10:34:32,079 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2023-10-01T10:34:32,081 copying singlem/diamond_parser.py -> build/lib/singlem 2023-10-01T10:34:32,083 copying singlem/checkm2.py -> build/lib/singlem 2023-10-01T10:34:32,084 copying singlem/__init__.py -> build/lib/singlem 2023-10-01T10:34:32,086 copying singlem/sequence_classes.py -> build/lib/singlem 2023-10-01T10:34:32,088 copying singlem/otu_table_collection.py -> build/lib/singlem 2023-10-01T10:34:32,090 copying singlem/singlem_package.py -> build/lib/singlem 2023-10-01T10:34:32,092 copying singlem/otu_table.py -> build/lib/singlem 2023-10-01T10:34:32,094 copying singlem/strain_summariser.py -> build/lib/singlem 2023-10-01T10:34:32,097 copying singlem/regenerator.py -> build/lib/singlem 2023-10-01T10:34:32,099 copying singlem/clusterer.py -> build/lib/singlem 2023-10-01T10:34:32,101 copying singlem/genome_size.py -> build/lib/singlem 2023-10-01T10:34:32,103 copying singlem/orf_length_checker.py -> build/lib/singlem 2023-10-01T10:34:32,104 copying singlem/kingfisher_sra.py -> build/lib/singlem 2023-10-01T10:34:32,106 copying singlem/summariser.py -> build/lib/singlem 2023-10-01T10:34:32,108 copying singlem/version.py -> build/lib/singlem 2023-10-01T10:34:32,110 copying singlem/singlem_database_models.py -> build/lib/singlem 2023-10-01T10:34:32,112 copying singlem/pipe.py -> build/lib/singlem 2023-10-01T10:34:32,115 copying singlem/query_formatters.py -> build/lib/singlem 2023-10-01T10:34:32,117 copying singlem/rarefier.py -> build/lib/singlem 2023-10-01T10:34:32,119 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2023-10-01T10:34:32,121 copying singlem/placement_parser.py -> build/lib/singlem 2023-10-01T10:34:32,123 copying singlem/appraiser.py -> build/lib/singlem 2023-10-01T10:34:32,126 copying singlem/known_otu_table.py -> build/lib/singlem 2023-10-01T10:34:32,128 copying singlem/chainsaw.py -> build/lib/singlem 2023-10-01T10:34:32,130 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2023-10-01T10:34:32,132 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2023-10-01T10:34:32,134 copying singlem/taxonomy.py -> build/lib/singlem 2023-10-01T10:34:32,136 copying singlem/sequence_extractor.py -> build/lib/singlem 2023-10-01T10:34:32,138 copying singlem/run_via_os_system.py -> build/lib/singlem 2023-10-01T10:34:32,139 copying singlem/sequence_database.py -> build/lib/singlem 2023-10-01T10:34:32,142 copying singlem/metapackage.py -> build/lib/singlem 2023-10-01T10:34:32,144 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2023-10-01T10:34:32,146 copying singlem/ordered_set.py -> build/lib/singlem 2023-10-01T10:34:32,148 copying singlem/appraisal_result.py -> build/lib/singlem 2023-10-01T10:34:32,150 copying singlem/dereplicator.py -> build/lib/singlem 2023-10-01T10:34:32,152 copying singlem/trim_package_hmms.py -> build/lib/singlem 2023-10-01T10:34:32,154 creating build/lib/singlem/biolib_lite 2023-10-01T10:34:32,155 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,157 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,159 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,161 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,163 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,165 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,167 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,169 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,171 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,173 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,175 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2023-10-01T10:34:32,178 running egg_info 2023-10-01T10:34:32,206 writing singlem.egg-info/PKG-INFO 2023-10-01T10:34:32,209 writing dependency_links to singlem.egg-info/dependency_links.txt 2023-10-01T10:34:32,210 writing requirements to singlem.egg-info/requires.txt 2023-10-01T10:34:32,211 writing top-level names to singlem.egg-info/top_level.txt 2023-10-01T10:34:32,241 reading manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-01T10:34:32,244 reading manifest template 'MANIFEST.in' 2023-10-01T10:34:32,245 warning: no files found matching 'LICENSE' 2023-10-01T10:34:32,246 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T10:34:32,246 adding license file 'LICENCE.txt' 2023-10-01T10:34:32,250 writing manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-01T10:34:32,255 running build_scripts 2023-10-01T10:34:32,255 creating build/scripts-3.11 2023-10-01T10:34:32,256 copying and adjusting bin/singlem -> build/scripts-3.11 2023-10-01T10:34:32,261 changing mode of build/scripts-3.11/singlem from 644 to 755 2023-10-01T10:34:32,286 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-01T10:34:32,286 !! 2023-10-01T10:34:32,287 ******************************************************************************** 2023-10-01T10:34:32,288 Please avoid running ``setup.py`` directly. 2023-10-01T10:34:32,288 Instead, use pypa/build, pypa/installer or other 2023-10-01T10:34:32,289 standards-based tools. 2023-10-01T10:34:32,290 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-01T10:34:32,290 ******************************************************************************** 2023-10-01T10:34:32,291 !! 2023-10-01T10:34:32,292 self.initialize_options() 2023-10-01T10:34:32,312 installing to build/bdist.linux-armv7l/wheel 2023-10-01T10:34:32,312 running install 2023-10-01T10:34:32,336 running install_lib 2023-10-01T10:34:32,361 creating build/bdist.linux-armv7l 2023-10-01T10:34:32,362 creating build/bdist.linux-armv7l/wheel 2023-10-01T10:34:32,364 creating build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,365 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,367 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,369 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,371 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,373 copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,375 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,377 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,380 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,381 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,384 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,386 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,389 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,391 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,393 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,394 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,396 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,397 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,399 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,401 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,403 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,405 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,407 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,409 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,412 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,413 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,414 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,416 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,419 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,420 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,422 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,424 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,426 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,428 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,430 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,433 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:34:32,435 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,437 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,439 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,441 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,443 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,445 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,447 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,451 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,453 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,454 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,457 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,459 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,461 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,463 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,465 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,468 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,470 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,472 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,473 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,475 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,478 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,480 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,482 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,483 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,486 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,487 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:34:32,489 running install_data 2023-10-01T10:34:32,515 creating build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data 2023-10-01T10:34:32,515 creating build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/data 2023-10-01T10:34:32,516 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/data/. 2023-10-01T10:34:32,518 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/data/. 2023-10-01T10:34:32,520 running install_egg_info 2023-10-01T10:34:32,551 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-1.0.0b8-py3.11.egg-info 2023-10-01T10:34:32,561 running install_scripts 2023-10-01T10:34:32,562 creating build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/scripts 2023-10-01T10:34:32,563 copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/scripts 2023-10-01T10:34:32,567 changing mode of build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.data/scripts/singlem to 755 2023-10-01T10:34:32,583 creating build/bdist.linux-armv7l/wheel/singlem-1.0.0b8.dist-info/WHEEL 2023-10-01T10:34:32,586 creating '/tmp/pip-wheel-tzrsbwnv/singlem-1.0.0b8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-01T10:34:32,589 adding 'singlem/__init__.py' 2023-10-01T10:34:32,592 adding 'singlem/appraisal_result.py' 2023-10-01T10:34:32,594 adding 'singlem/appraiser.py' 2023-10-01T10:34:32,596 adding 'singlem/archive_otu_table.py' 2023-10-01T10:34:32,598 adding 'singlem/chainsaw.py' 2023-10-01T10:34:32,599 adding 'singlem/checkm2.py' 2023-10-01T10:34:32,601 adding 'singlem/clusterer.py' 2023-10-01T10:34:32,607 adding 'singlem/condense.py' 2023-10-01T10:34:32,609 adding 'singlem/dereplicator.py' 2023-10-01T10:34:32,610 adding 'singlem/diamond_parser.py' 2023-10-01T10:34:32,611 adding 'singlem/diamond_spkg_searcher.py' 2023-10-01T10:34:32,613 adding 'singlem/genome_size.py' 2023-10-01T10:34:32,614 adding 'singlem/graftm_result.py' 2023-10-01T10:34:32,616 adding 'singlem/kingfisher_sra.py' 2023-10-01T10:34:32,618 adding 'singlem/known_otu_table.py' 2023-10-01T10:34:32,620 adding 'singlem/metagenome_otu_finder.py' 2023-10-01T10:34:32,622 adding 'singlem/metapackage.py' 2023-10-01T10:34:32,624 adding 'singlem/metapackage_read_name_store.py' 2023-10-01T10:34:32,625 adding 'singlem/ordered_set.py' 2023-10-01T10:34:32,626 adding 'singlem/orf_length_checker.py' 2023-10-01T10:34:32,628 adding 'singlem/otu_table.py' 2023-10-01T10:34:32,630 adding 'singlem/otu_table_collection.py' 2023-10-01T10:34:32,632 adding 'singlem/otu_table_entry.py' 2023-10-01T10:34:32,633 adding 'singlem/package_creator.py' 2023-10-01T10:34:32,643 adding 'singlem/pipe.py' 2023-10-01T10:34:32,646 adding 'singlem/pipe_sequence_extractor.py' 2023-10-01T10:34:32,648 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2023-10-01T10:34:32,650 adding 'singlem/placement_parser.py' 2023-10-01T10:34:32,653 adding 'singlem/querier.py' 2023-10-01T10:34:32,655 adding 'singlem/query_formatters.py' 2023-10-01T10:34:32,656 adding 'singlem/rarefier.py' 2023-10-01T10:34:32,658 adding 'singlem/read_fraction.py' 2023-10-01T10:34:32,660 adding 'singlem/regenerator.py' 2023-10-01T10:34:32,661 adding 'singlem/renew.py' 2023-10-01T10:34:32,663 adding 'singlem/run_via_os_system.py' 2023-10-01T10:34:32,664 adding 'singlem/sequence_classes.py' 2023-10-01T10:34:32,669 adding 'singlem/sequence_database.py' 2023-10-01T10:34:32,671 adding 'singlem/sequence_extractor.py' 2023-10-01T10:34:32,672 adding 'singlem/singlem.py' 2023-10-01T10:34:32,673 adding 'singlem/singlem_database_models.py' 2023-10-01T10:34:32,676 adding 'singlem/singlem_package.py' 2023-10-01T10:34:32,677 adding 'singlem/strain_summariser.py' 2023-10-01T10:34:32,679 adding 'singlem/streaming_hmm_search_result.py' 2023-10-01T10:34:32,681 adding 'singlem/summariser.py' 2023-10-01T10:34:32,686 adding 'singlem/supplement.py' 2023-10-01T10:34:32,688 adding 'singlem/taxonomy.py' 2023-10-01T10:34:32,689 adding 'singlem/taxonomy_bihash.py' 2023-10-01T10:34:32,691 adding 'singlem/trim_package_hmms.py' 2023-10-01T10:34:32,692 adding 'singlem/version.py' 2023-10-01T10:34:32,693 adding 'singlem/biolib_lite/__init__.py' 2023-10-01T10:34:32,695 adding 'singlem/biolib_lite/common.py' 2023-10-01T10:34:32,696 adding 'singlem/biolib_lite/custom_help_formatter.py' 2023-10-01T10:34:32,698 adding 'singlem/biolib_lite/exceptions.py' 2023-10-01T10:34:32,699 adding 'singlem/biolib_lite/execute.py' 2023-10-01T10:34:32,701 adding 'singlem/biolib_lite/logger.py' 2023-10-01T10:34:32,702 adding 'singlem/biolib_lite/newick.py' 2023-10-01T10:34:32,704 adding 'singlem/biolib_lite/parallel.py' 2023-10-01T10:34:32,706 adding 'singlem/biolib_lite/prodigal_biolib.py' 2023-10-01T10:34:32,708 adding 'singlem/biolib_lite/seq_io.py' 2023-10-01T10:34:32,711 adding 'singlem/biolib_lite/taxonomy.py' 2023-10-01T10:34:32,718 adding 'singlem-1.0.0b8.data/data/LICENCE.txt' 2023-10-01T10:34:32,720 adding 'singlem-1.0.0b8.data/data/README.md' 2023-10-01T10:34:32,729 adding 'singlem-1.0.0b8.data/scripts/singlem' 2023-10-01T10:34:32,737 adding 'singlem-1.0.0b8.dist-info/LICENCE.txt' 2023-10-01T10:34:32,738 adding 'singlem-1.0.0b8.dist-info/METADATA' 2023-10-01T10:34:32,739 adding 'singlem-1.0.0b8.dist-info/WHEEL' 2023-10-01T10:34:32,740 adding 'singlem-1.0.0b8.dist-info/top_level.txt' 2023-10-01T10:34:32,742 adding 'singlem-1.0.0b8.dist-info/RECORD' 2023-10-01T10:34:32,746 removing build/bdist.linux-armv7l/wheel 2023-10-01T10:34:32,877 Building wheel for singlem (setup.py): finished with status 'done' 2023-10-01T10:34:32,882 Created wheel for singlem: filename=singlem-1.0.0b8-py3-none-any.whl size=206767 sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c 2023-10-01T10:34:32,884 Stored in directory: /tmp/pip-ephem-wheel-cache-xhjd5p6v/wheels/16/6d/52/40769d865cecf311bc9ce026b0fd0a01c4400a06237b940fe7 2023-10-01T10:34:32,896 Successfully built singlem 2023-10-01T10:34:32,904 Removed build tracker: '/tmp/pip-build-tracker-ajsvmqb2'