2023-10-01T10:35:15,975 Created temporary directory: /tmp/pip-build-tracker-dubp4w0n 2023-10-01T10:35:15,976 Initialized build tracking at /tmp/pip-build-tracker-dubp4w0n 2023-10-01T10:35:15,976 Created build tracker: /tmp/pip-build-tracker-dubp4w0n 2023-10-01T10:35:15,977 Entered build tracker: /tmp/pip-build-tracker-dubp4w0n 2023-10-01T10:35:15,978 Created temporary directory: /tmp/pip-wheel-tecr_1ot 2023-10-01T10:35:15,981 Created temporary directory: /tmp/pip-ephem-wheel-cache-utyai55l 2023-10-01T10:35:16,002 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T10:35:16,006 2 location(s) to search for versions of singlem: 2023-10-01T10:35:16,006 * https://pypi.org/simple/singlem/ 2023-10-01T10:35:16,006 * https://www.piwheels.org/simple/singlem/ 2023-10-01T10:35:16,007 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2023-10-01T10:35:16,007 Getting page https://pypi.org/simple/singlem/ 2023-10-01T10:35:16,009 Found index url https://pypi.org/simple/ 2023-10-01T10:35:16,148 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2023-10-01T10:35:16,153 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2023-10-01T10:35:16,153 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2023-10-01T10:35:16,154 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2023-10-01T10:35:16,155 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2023-10-01T10:35:16,155 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2023-10-01T10:35:16,156 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2023-10-01T10:35:16,157 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2023-10-01T10:35:16,157 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2023-10-01T10:35:16,158 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:35:16,159 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2023-10-01T10:35:16,159 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:35:16,160 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2023-10-01T10:35:16,160 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:35:16,161 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2023-10-01T10:35:16,162 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:35:16,163 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2023-10-01T10:35:16,163 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-01T10:35:16,164 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2023-10-01T10:35:16,164 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2023-10-01T10:35:16,165 Getting page https://www.piwheels.org/simple/singlem/ 2023-10-01T10:35:16,166 Found index url https://www.piwheels.org/simple/ 2023-10-01T10:35:16,327 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2023-10-01T10:35:16,331 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,331 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,332 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,332 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,333 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,334 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,334 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2023-10-01T10:35:16,335 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2023-10-01T10:35:16,336 Skipping link: not a file: https://pypi.org/simple/singlem/ 2023-10-01T10:35:16,357 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2023-10-01T10:35:16,376 Collecting singlem==0.14.0 2023-10-01T10:35:16,378 Created temporary directory: /tmp/pip-unpack-yi1cwop_ 2023-10-01T10:35:16,595 Downloading singlem-0.14.0.tar.gz (170 kB) 2023-10-01T10:35:16,820 Added singlem==0.14.0 from https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz to build tracker '/tmp/pip-build-tracker-dubp4w0n' 2023-10-01T10:35:16,822 Running setup.py (path:/tmp/pip-wheel-tecr_1ot/singlem_e5ac7d79d35e409c9662274ef8762e70/setup.py) egg_info for package singlem 2023-10-01T10:35:16,823 Created temporary directory: /tmp/pip-pip-egg-info-lqjzchv2 2023-10-01T10:35:16,823 Preparing metadata (setup.py): started 2023-10-01T10:35:16,825 Running command python setup.py egg_info 2023-10-01T10:35:17,888 running egg_info 2023-10-01T10:35:17,889 creating /tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info 2023-10-01T10:35:17,918 writing /tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/PKG-INFO 2023-10-01T10:35:17,921 writing dependency_links to /tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/dependency_links.txt 2023-10-01T10:35:17,923 writing requirements to /tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/requires.txt 2023-10-01T10:35:17,924 writing top-level names to /tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/top_level.txt 2023-10-01T10:35:17,925 writing manifest file '/tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/SOURCES.txt' 2023-10-01T10:35:18,040 reading manifest file '/tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/SOURCES.txt' 2023-10-01T10:35:18,041 reading manifest template 'MANIFEST.in' 2023-10-01T10:35:18,042 warning: no files found matching 'LICENSE' 2023-10-01T10:35:18,043 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T10:35:18,044 adding license file 'LICENCE.txt' 2023-10-01T10:35:18,047 writing manifest file '/tmp/pip-pip-egg-info-lqjzchv2/singlem.egg-info/SOURCES.txt' 2023-10-01T10:35:18,158 Preparing metadata (setup.py): finished with status 'done' 2023-10-01T10:35:18,162 Source in /tmp/pip-wheel-tecr_1ot/singlem_e5ac7d79d35e409c9662274ef8762e70 has version 0.14.0, which satisfies requirement singlem==0.14.0 from https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz 2023-10-01T10:35:18,163 Removed singlem==0.14.0 from https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz from build tracker '/tmp/pip-build-tracker-dubp4w0n' 2023-10-01T10:35:18,167 Created temporary directory: /tmp/pip-unpack-ugab4dgh 2023-10-01T10:35:18,168 Created temporary directory: /tmp/pip-unpack-ct78zzv2 2023-10-01T10:35:18,185 Building wheels for collected packages: singlem 2023-10-01T10:35:18,189 Created temporary directory: /tmp/pip-wheel-drj9zaqu 2023-10-01T10:35:18,189 Building wheel for singlem (setup.py): started 2023-10-01T10:35:18,191 Destination directory: /tmp/pip-wheel-drj9zaqu 2023-10-01T10:35:18,191 Running command python setup.py bdist_wheel 2023-10-01T10:35:19,226 running bdist_wheel 2023-10-01T10:35:19,357 running build 2023-10-01T10:35:19,358 running build_py 2023-10-01T10:35:19,386 creating build 2023-10-01T10:35:19,387 creating build/lib 2023-10-01T10:35:19,387 creating build/lib/singlem 2023-10-01T10:35:19,389 copying singlem/placement_parser.py -> build/lib/singlem 2023-10-01T10:35:19,391 copying singlem/sequence_extractor.py -> build/lib/singlem 2023-10-01T10:35:19,393 copying singlem/rarefier.py -> build/lib/singlem 2023-10-01T10:35:19,395 copying singlem/strain_summariser.py -> build/lib/singlem 2023-10-01T10:35:19,397 copying singlem/checkm2.py -> build/lib/singlem 2023-10-01T10:35:19,399 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2023-10-01T10:35:19,400 copying singlem/supplement.py -> build/lib/singlem 2023-10-01T10:35:19,403 copying singlem/known_otu_table.py -> build/lib/singlem 2023-10-01T10:35:19,405 copying singlem/run_via_os_system.py -> build/lib/singlem 2023-10-01T10:35:19,406 copying singlem/__init__.py -> build/lib/singlem 2023-10-01T10:35:19,408 copying singlem/singlem_package.py -> build/lib/singlem 2023-10-01T10:35:19,410 copying singlem/version.py -> build/lib/singlem 2023-10-01T10:35:19,412 copying singlem/querier.py -> build/lib/singlem 2023-10-01T10:35:19,415 copying singlem/chainsaw.py -> build/lib/singlem 2023-10-01T10:35:19,417 copying singlem/diamond_parser.py -> build/lib/singlem 2023-10-01T10:35:19,419 copying singlem/read_fraction.py -> build/lib/singlem 2023-10-01T10:35:19,421 copying singlem/dereplicator.py -> build/lib/singlem 2023-10-01T10:35:19,422 copying singlem/pipe.py -> build/lib/singlem 2023-10-01T10:35:19,426 copying singlem/sequence_classes.py -> build/lib/singlem 2023-10-01T10:35:19,428 copying singlem/otu_table.py -> build/lib/singlem 2023-10-01T10:35:19,430 copying singlem/graftm_result.py -> build/lib/singlem 2023-10-01T10:35:19,431 copying singlem/ordered_set.py -> build/lib/singlem 2023-10-01T10:35:19,433 copying singlem/otu_table_collection.py -> build/lib/singlem 2023-10-01T10:35:19,435 copying singlem/singlem.py -> build/lib/singlem 2023-10-01T10:35:19,437 copying singlem/renew.py -> build/lib/singlem 2023-10-01T10:35:19,439 copying singlem/archive_otu_table.py -> build/lib/singlem 2023-10-01T10:35:19,441 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2023-10-01T10:35:19,443 copying singlem/clusterer.py -> build/lib/singlem 2023-10-01T10:35:19,445 copying singlem/appraiser.py -> build/lib/singlem 2023-10-01T10:35:19,447 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2023-10-01T10:35:19,449 copying singlem/regenerator.py -> build/lib/singlem 2023-10-01T10:35:19,451 copying singlem/sequence_database.py -> build/lib/singlem 2023-10-01T10:35:19,454 copying singlem/orf_length_checker.py -> build/lib/singlem 2023-10-01T10:35:19,456 copying singlem/singlem_database_models.py -> build/lib/singlem 2023-10-01T10:35:19,458 copying singlem/trim_package_hmms.py -> build/lib/singlem 2023-10-01T10:35:19,460 copying singlem/package_creator.py -> build/lib/singlem 2023-10-01T10:35:19,462 copying singlem/otu_table_entry.py -> build/lib/singlem 2023-10-01T10:35:19,464 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2023-10-01T10:35:19,466 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2023-10-01T10:35:19,468 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2023-10-01T10:35:19,470 copying singlem/query_formatters.py -> build/lib/singlem 2023-10-01T10:35:19,472 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2023-10-01T10:35:19,473 copying singlem/condense.py -> build/lib/singlem 2023-10-01T10:35:19,476 copying singlem/taxonomy.py -> build/lib/singlem 2023-10-01T10:35:19,478 copying singlem/summariser.py -> build/lib/singlem 2023-10-01T10:35:19,481 copying singlem/kingfisher_sra.py -> build/lib/singlem 2023-10-01T10:35:19,484 copying singlem/appraisal_result.py -> build/lib/singlem 2023-10-01T10:35:19,486 copying singlem/metapackage.py -> build/lib/singlem 2023-10-01T10:35:19,488 copying singlem/genome_size.py -> build/lib/singlem 2023-10-01T10:35:19,491 creating build/lib/singlem/biolib_lite 2023-10-01T10:35:19,492 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,494 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,497 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,499 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,501 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,503 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,505 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,507 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,509 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,511 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,513 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2023-10-01T10:35:19,515 running egg_info 2023-10-01T10:35:19,544 writing singlem.egg-info/PKG-INFO 2023-10-01T10:35:19,547 writing dependency_links to singlem.egg-info/dependency_links.txt 2023-10-01T10:35:19,549 writing requirements to singlem.egg-info/requires.txt 2023-10-01T10:35:19,550 writing top-level names to singlem.egg-info/top_level.txt 2023-10-01T10:35:19,579 reading manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-01T10:35:19,582 reading manifest template 'MANIFEST.in' 2023-10-01T10:35:19,583 warning: no files found matching 'LICENSE' 2023-10-01T10:35:19,584 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T10:35:19,585 adding license file 'LICENCE.txt' 2023-10-01T10:35:19,588 writing manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-01T10:35:19,593 running build_scripts 2023-10-01T10:35:19,593 creating build/scripts-3.11 2023-10-01T10:35:19,594 copying and adjusting bin/singlem -> build/scripts-3.11 2023-10-01T10:35:19,599 changing mode of build/scripts-3.11/singlem from 644 to 755 2023-10-01T10:35:19,625 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-01T10:35:19,626 !! 2023-10-01T10:35:19,627 ******************************************************************************** 2023-10-01T10:35:19,627 Please avoid running ``setup.py`` directly. 2023-10-01T10:35:19,628 Instead, use pypa/build, pypa/installer or other 2023-10-01T10:35:19,628 standards-based tools. 2023-10-01T10:35:19,629 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-01T10:35:19,630 ******************************************************************************** 2023-10-01T10:35:19,631 !! 2023-10-01T10:35:19,631 self.initialize_options() 2023-10-01T10:35:19,651 installing to build/bdist.linux-armv7l/wheel 2023-10-01T10:35:19,652 running install 2023-10-01T10:35:19,675 running install_lib 2023-10-01T10:35:19,700 creating build/bdist.linux-armv7l 2023-10-01T10:35:19,701 creating build/bdist.linux-armv7l/wheel 2023-10-01T10:35:19,704 creating build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,705 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,707 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,709 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,710 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,713 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,714 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,716 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,719 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,721 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,723 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,724 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,727 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,729 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,732 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,734 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,737 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,740 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,741 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,745 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,747 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,750 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,752 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,754 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,757 copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,759 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,761 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,763 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,766 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,768 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,771 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,773 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,776 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,780 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,781 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,783 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,785 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,788 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,789 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,791 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,794 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,796 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,798 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,800 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,802 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-01T10:35:19,805 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,807 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,809 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,812 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,814 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,816 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,818 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,820 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,822 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,824 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,826 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,829 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,831 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,833 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,835 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,838 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,840 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-01T10:35:19,842 running install_data 2023-10-01T10:35:19,867 creating build/bdist.linux-armv7l/wheel/singlem-0.14.0.data 2023-10-01T10:35:19,868 creating build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/data 2023-10-01T10:35:19,869 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/data/. 2023-10-01T10:35:19,871 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/data/. 2023-10-01T10:35:19,873 running install_egg_info 2023-10-01T10:35:19,905 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.14.0-py3.11.egg-info 2023-10-01T10:35:19,914 running install_scripts 2023-10-01T10:35:19,916 creating build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/scripts 2023-10-01T10:35:19,917 copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/scripts 2023-10-01T10:35:19,921 changing mode of build/bdist.linux-armv7l/wheel/singlem-0.14.0.data/scripts/singlem to 755 2023-10-01T10:35:19,941 creating build/bdist.linux-armv7l/wheel/singlem-0.14.0.dist-info/WHEEL 2023-10-01T10:35:19,944 creating '/tmp/pip-wheel-drj9zaqu/singlem-0.14.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-01T10:35:19,947 adding 'singlem/__init__.py' 2023-10-01T10:35:19,950 adding 'singlem/appraisal_result.py' 2023-10-01T10:35:19,952 adding 'singlem/appraiser.py' 2023-10-01T10:35:19,954 adding 'singlem/archive_otu_table.py' 2023-10-01T10:35:19,955 adding 'singlem/chainsaw.py' 2023-10-01T10:35:19,960 adding 'singlem/checkm2.py' 2023-10-01T10:35:19,962 adding 'singlem/clusterer.py' 2023-10-01T10:35:19,968 adding 'singlem/condense.py' 2023-10-01T10:35:19,969 adding 'singlem/dereplicator.py' 2023-10-01T10:35:19,971 adding 'singlem/diamond_parser.py' 2023-10-01T10:35:19,972 adding 'singlem/diamond_spkg_searcher.py' 2023-10-01T10:35:19,973 adding 'singlem/genome_size.py' 2023-10-01T10:35:19,975 adding 'singlem/graftm_result.py' 2023-10-01T10:35:19,976 adding 'singlem/kingfisher_sra.py' 2023-10-01T10:35:19,978 adding 'singlem/known_otu_table.py' 2023-10-01T10:35:19,980 adding 'singlem/metagenome_otu_finder.py' 2023-10-01T10:35:19,982 adding 'singlem/metapackage.py' 2023-10-01T10:35:19,984 adding 'singlem/metapackage_read_name_store.py' 2023-10-01T10:35:19,985 adding 'singlem/ordered_set.py' 2023-10-01T10:35:19,986 adding 'singlem/orf_length_checker.py' 2023-10-01T10:35:19,988 adding 'singlem/otu_table.py' 2023-10-01T10:35:19,990 adding 'singlem/otu_table_collection.py' 2023-10-01T10:35:19,991 adding 'singlem/otu_table_entry.py' 2023-10-01T10:35:19,993 adding 'singlem/package_creator.py' 2023-10-01T10:35:20,002 adding 'singlem/pipe.py' 2023-10-01T10:35:20,006 adding 'singlem/pipe_sequence_extractor.py' 2023-10-01T10:35:20,008 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2023-10-01T10:35:20,009 adding 'singlem/placement_parser.py' 2023-10-01T10:35:20,013 adding 'singlem/querier.py' 2023-10-01T10:35:20,015 adding 'singlem/query_formatters.py' 2023-10-01T10:35:20,016 adding 'singlem/rarefier.py' 2023-10-01T10:35:20,018 adding 'singlem/read_fraction.py' 2023-10-01T10:35:20,020 adding 'singlem/regenerator.py' 2023-10-01T10:35:20,021 adding 'singlem/renew.py' 2023-10-01T10:35:20,022 adding 'singlem/run_via_os_system.py' 2023-10-01T10:35:20,024 adding 'singlem/sequence_classes.py' 2023-10-01T10:35:20,029 adding 'singlem/sequence_database.py' 2023-10-01T10:35:20,030 adding 'singlem/sequence_extractor.py' 2023-10-01T10:35:20,031 adding 'singlem/singlem.py' 2023-10-01T10:35:20,033 adding 'singlem/singlem_database_models.py' 2023-10-01T10:35:20,035 adding 'singlem/singlem_package.py' 2023-10-01T10:35:20,037 adding 'singlem/strain_summariser.py' 2023-10-01T10:35:20,038 adding 'singlem/streaming_hmm_search_result.py' 2023-10-01T10:35:20,041 adding 'singlem/summariser.py' 2023-10-01T10:35:20,046 adding 'singlem/supplement.py' 2023-10-01T10:35:20,047 adding 'singlem/taxonomy.py' 2023-10-01T10:35:20,048 adding 'singlem/taxonomy_bihash.py' 2023-10-01T10:35:20,050 adding 'singlem/trim_package_hmms.py' 2023-10-01T10:35:20,051 adding 'singlem/version.py' 2023-10-01T10:35:20,053 adding 'singlem/biolib_lite/__init__.py' 2023-10-01T10:35:20,054 adding 'singlem/biolib_lite/common.py' 2023-10-01T10:35:20,056 adding 'singlem/biolib_lite/custom_help_formatter.py' 2023-10-01T10:35:20,057 adding 'singlem/biolib_lite/exceptions.py' 2023-10-01T10:35:20,059 adding 'singlem/biolib_lite/execute.py' 2023-10-01T10:35:20,060 adding 'singlem/biolib_lite/logger.py' 2023-10-01T10:35:20,062 adding 'singlem/biolib_lite/newick.py' 2023-10-01T10:35:20,064 adding 'singlem/biolib_lite/parallel.py' 2023-10-01T10:35:20,066 adding 'singlem/biolib_lite/prodigal_biolib.py' 2023-10-01T10:35:20,068 adding 'singlem/biolib_lite/seq_io.py' 2023-10-01T10:35:20,071 adding 'singlem/biolib_lite/taxonomy.py' 2023-10-01T10:35:20,079 adding 'singlem-0.14.0.data/data/LICENCE.txt' 2023-10-01T10:35:20,080 adding 'singlem-0.14.0.data/data/README.md' 2023-10-01T10:35:20,089 adding 'singlem-0.14.0.data/scripts/singlem' 2023-10-01T10:35:20,097 adding 'singlem-0.14.0.dist-info/LICENCE.txt' 2023-10-01T10:35:20,098 adding 'singlem-0.14.0.dist-info/METADATA' 2023-10-01T10:35:20,099 adding 'singlem-0.14.0.dist-info/WHEEL' 2023-10-01T10:35:20,100 adding 'singlem-0.14.0.dist-info/top_level.txt' 2023-10-01T10:35:20,102 adding 'singlem-0.14.0.dist-info/RECORD' 2023-10-01T10:35:20,106 removing build/bdist.linux-armv7l/wheel 2023-10-01T10:35:20,235 Building wheel for singlem (setup.py): finished with status 'done' 2023-10-01T10:35:20,240 Created wheel for singlem: filename=singlem-0.14.0-py3-none-any.whl size=206741 sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 2023-10-01T10:35:20,242 Stored in directory: /tmp/pip-ephem-wheel-cache-utyai55l/wheels/71/f4/ee/627928121d074351f6a9c26394002db7cae7532e5865d49754 2023-10-01T10:35:20,254 Successfully built singlem 2023-10-01T10:35:20,263 Removed build tracker: '/tmp/pip-build-tracker-dubp4w0n'