2023-10-01T14:53:35,559 Created temporary directory: /tmp/pip-build-tracker-3o79o637
2023-10-01T14:53:35,560 Initialized build tracking at /tmp/pip-build-tracker-3o79o637
2023-10-01T14:53:35,561 Created build tracker: /tmp/pip-build-tracker-3o79o637
2023-10-01T14:53:35,561 Entered build tracker: /tmp/pip-build-tracker-3o79o637
2023-10-01T14:53:35,562 Created temporary directory: /tmp/pip-wheel-31gpwhi4
2023-10-01T14:53:35,565 Created temporary directory: /tmp/pip-ephem-wheel-cache-0mbddtzs
2023-10-01T14:53:35,586 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-01T14:53:35,590 2 location(s) to search for versions of cartimorph-nnunet:
2023-10-01T14:53:35,590 * https://pypi.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,590 * https://www.piwheels.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,591 Fetching project page and analyzing links: https://pypi.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,592 Getting page https://pypi.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,593 Found index url https://pypi.org/simple/
2023-10-01T14:53:35,846 Fetched page https://pypi.org/simple/cartimorph-nnunet/ as application/vnd.pypi.simple.v1+json
2023-10-01T14:53:35,848   Skipping link: No binaries permitted for cartimorph-nnunet: https://files.pythonhosted.org/packages/59/4c/5048844130234c407c3d3c3058f3fdd5757d03f4cf2828d2f77be0e187e2/CartiMorph_nnUNet-1.7.14-py3-none-any.whl (from https://pypi.org/simple/cartimorph-nnunet/)
2023-10-01T14:53:35,849   Found link https://files.pythonhosted.org/packages/f6/31/a30f2b213cea9b5ec8e997029106c324ef74c885ff7be3913630fd7868ae/CartiMorph_nnUNet-1.7.14.tar.gz (from https://pypi.org/simple/cartimorph-nnunet/), version: 1.7.14
2023-10-01T14:53:35,849   Skipping link: No binaries permitted for cartimorph-nnunet: https://files.pythonhosted.org/packages/0e/bb/1424d6d56f1a2c834464b21109f858032a35ced088c517026444d311db55/CartiMorph_nnUNet-1.7.15-py3-none-any.whl (from https://pypi.org/simple/cartimorph-nnunet/)
2023-10-01T14:53:35,850   Found link https://files.pythonhosted.org/packages/6c/ef/4d0ab42d94236eb2f25eaf8afb63f0514c1ad68456cc2b317db8b40e2a48/CartiMorph_nnUNet-1.7.15.tar.gz (from https://pypi.org/simple/cartimorph-nnunet/), version: 1.7.15
2023-10-01T14:53:35,851 Fetching project page and analyzing links: https://www.piwheels.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,852 Getting page https://www.piwheels.org/simple/cartimorph-nnunet/
2023-10-01T14:53:35,853 Found index url https://www.piwheels.org/simple/
2023-10-01T14:53:36,013 Fetched page https://www.piwheels.org/simple/cartimorph-nnunet/ as text/html
2023-10-01T14:53:36,015   Skipping link: No binaries permitted for cartimorph-nnunet: https://www.piwheels.org/simple/cartimorph-nnunet/CartiMorph_nnUNet-1.7.14-py3-none-any.whl#sha256=975103e96f8abdaec6dec6b5e71f1827587d855732c8248e9faf702c788f3ec6 (from https://www.piwheels.org/simple/cartimorph-nnunet/)
2023-10-01T14:53:36,015 Skipping link: not a file: https://www.piwheels.org/simple/cartimorph-nnunet/
2023-10-01T14:53:36,016 Skipping link: not a file: https://pypi.org/simple/cartimorph-nnunet/
2023-10-01T14:53:36,035 Given no hashes to check 1 links for project 'cartimorph-nnunet': discarding no candidates
2023-10-01T14:53:36,053 Collecting cartimorph-nnunet==1.7.15
2023-10-01T14:53:36,055   Created temporary directory: /tmp/pip-unpack-wy6uw113
2023-10-01T14:53:36,279   Downloading CartiMorph_nnUNet-1.7.15.tar.gz (158 kB)
2023-10-01T14:53:36,589   Added cartimorph-nnunet==1.7.15 from https://files.pythonhosted.org/packages/6c/ef/4d0ab42d94236eb2f25eaf8afb63f0514c1ad68456cc2b317db8b40e2a48/CartiMorph_nnUNet-1.7.15.tar.gz to build tracker '/tmp/pip-build-tracker-3o79o637'
2023-10-01T14:53:36,590   Running setup.py (path:/tmp/pip-wheel-31gpwhi4/cartimorph-nnunet_c3df493466d84245a1811beb5eed0868/setup.py) egg_info for package cartimorph-nnunet
2023-10-01T14:53:36,591   Created temporary directory: /tmp/pip-pip-egg-info-51lc2611
2023-10-01T14:53:36,592   Preparing metadata (setup.py): started
2023-10-01T14:53:36,593   Running command python setup.py egg_info
2023-10-01T14:53:37,590   running egg_info
2023-10-01T14:53:37,591   creating /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info
2023-10-01T14:53:37,615   writing /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/PKG-INFO
2023-10-01T14:53:37,618   writing dependency_links to /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/dependency_links.txt
2023-10-01T14:53:37,619   writing entry points to /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/entry_points.txt
2023-10-01T14:53:37,621   writing requirements to /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/requires.txt
2023-10-01T14:53:37,622   writing top-level names to /tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/top_level.txt
2023-10-01T14:53:37,623   writing manifest file '/tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/SOURCES.txt'
2023-10-01T14:53:37,712   reading manifest file '/tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/SOURCES.txt'
2023-10-01T14:53:37,713   adding license file 'LICENSE'
2023-10-01T14:53:37,718   writing manifest file '/tmp/pip-pip-egg-info-51lc2611/CartiMorph_nnUNet.egg-info/SOURCES.txt'
2023-10-01T14:53:37,827   Preparing metadata (setup.py): finished with status 'done'
2023-10-01T14:53:37,831   Source in /tmp/pip-wheel-31gpwhi4/cartimorph-nnunet_c3df493466d84245a1811beb5eed0868 has version 1.7.15, which satisfies requirement cartimorph-nnunet==1.7.15 from https://files.pythonhosted.org/packages/6c/ef/4d0ab42d94236eb2f25eaf8afb63f0514c1ad68456cc2b317db8b40e2a48/CartiMorph_nnUNet-1.7.15.tar.gz
2023-10-01T14:53:37,832   Removed cartimorph-nnunet==1.7.15 from https://files.pythonhosted.org/packages/6c/ef/4d0ab42d94236eb2f25eaf8afb63f0514c1ad68456cc2b317db8b40e2a48/CartiMorph_nnUNet-1.7.15.tar.gz from build tracker '/tmp/pip-build-tracker-3o79o637'
2023-10-01T14:53:37,836 Created temporary directory: /tmp/pip-unpack-lzr9pe4w
2023-10-01T14:53:37,837 Created temporary directory: /tmp/pip-unpack-azlihlqm
2023-10-01T14:53:37,852 Building wheels for collected packages: cartimorph-nnunet
2023-10-01T14:53:37,856   Created temporary directory: /tmp/pip-wheel-k91p7qrq
2023-10-01T14:53:37,857   Building wheel for cartimorph-nnunet (setup.py): started
2023-10-01T14:53:37,858   Destination directory: /tmp/pip-wheel-k91p7qrq
2023-10-01T14:53:37,859   Running command python setup.py bdist_wheel
2023-10-01T14:53:38,842   running bdist_wheel
2023-10-01T14:53:38,935   running build
2023-10-01T14:53:38,935   running build_py
2023-10-01T14:53:38,962   creating build
2023-10-01T14:53:38,963   creating build/lib
2023-10-01T14:53:38,965   creating build/lib/CartiMorph_nnUNet
2023-10-01T14:53:38,966   copying CartiMorph_nnUNet/__init__.py -> build/lib/CartiMorph_nnUNet
2023-10-01T14:53:38,968   copying CartiMorph_nnUNet/paths.py -> build/lib/CartiMorph_nnUNet
2023-10-01T14:53:38,970   copying CartiMorph_nnUNet/configuration.py -> build/lib/CartiMorph_nnUNet
2023-10-01T14:53:38,973   creating build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,974   copying CartiMorph_nnUNet/network_architecture/__init__.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,976   copying CartiMorph_nnUNet/network_architecture/neural_network.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,979   copying CartiMorph_nnUNet/network_architecture/generic_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,982   copying CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,984   copying CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,987   copying CartiMorph_nnUNet/network_architecture/initialization.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,989   copying CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,992   copying CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:38,995   creating build/lib/CartiMorph_nnUNet/training
2023-10-01T14:53:38,997   copying CartiMorph_nnUNet/training/__init__.py -> build/lib/CartiMorph_nnUNet/training
2023-10-01T14:53:38,999   copying CartiMorph_nnUNet/training/model_restore.py -> build/lib/CartiMorph_nnUNet/training
2023-10-01T14:53:39,001   creating build/lib/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,002   copying CartiMorph_nnUNet/evaluation/__init__.py -> build/lib/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,005   copying CartiMorph_nnUNet/evaluation/metrics.py -> build/lib/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,007   copying CartiMorph_nnUNet/evaluation/evaluator.py -> build/lib/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,010   copying CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py -> build/lib/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,012   creating build/lib/CartiMorph_nnUNet/run
2023-10-01T14:53:39,013   copying CartiMorph_nnUNet/run/__init__.py -> build/lib/CartiMorph_nnUNet/run
2023-10-01T14:53:39,015   copying CartiMorph_nnUNet/run/default_configuration.py -> build/lib/CartiMorph_nnUNet/run
2023-10-01T14:53:39,017   copying CartiMorph_nnUNet/run/run_training.py -> build/lib/CartiMorph_nnUNet/run
2023-10-01T14:53:39,020   copying CartiMorph_nnUNet/run/load_pretrained_weights.py -> build/lib/CartiMorph_nnUNet/run
2023-10-01T14:53:39,022   creating build/lib/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,023   copying CartiMorph_nnUNet/dataset_conversion/__init__.py -> build/lib/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,025   copying CartiMorph_nnUNet/dataset_conversion/utils.py -> build/lib/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,028   creating build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,029   copying CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,032   copying CartiMorph_nnUNet/experiment_planning/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,034   copying CartiMorph_nnUNet/experiment_planning/utils.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,037   copying CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,039   copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,041   copying CartiMorph_nnUNet/experiment_planning/summarize_plans.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,044   copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,047   copying CartiMorph_nnUNet/experiment_planning/common_utils.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,049   copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,051   copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,054   creating build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,056   copying CartiMorph_nnUNet/utilities/folder_names.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,058   copying CartiMorph_nnUNet/utilities/__init__.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,060   copying CartiMorph_nnUNet/utilities/one_hot_encoding.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,062   copying CartiMorph_nnUNet/utilities/task_name_id_conversion.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,064   copying CartiMorph_nnUNet/utilities/nd_softmax.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,066   copying CartiMorph_nnUNet/utilities/set_n_proc_DA.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,068   copying CartiMorph_nnUNet/utilities/sitk_stuff.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,069   copying CartiMorph_nnUNet/utilities/random_stuff.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,071   copying CartiMorph_nnUNet/utilities/to_torch.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,073   copying CartiMorph_nnUNet/utilities/tensor_utilities.py -> build/lib/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,076   creating build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,077   copying CartiMorph_nnUNet/inference/__init__.py -> build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,079   copying CartiMorph_nnUNet/inference/predict.py -> build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,082   copying CartiMorph_nnUNet/inference/segmentation_export.py -> build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,084   copying CartiMorph_nnUNet/inference/ensemble_predictions.py -> build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,086   copying CartiMorph_nnUNet/inference/predict_simple.py -> build/lib/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,089   creating build/lib/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,090   copying CartiMorph_nnUNet/preprocessing/__init__.py -> build/lib/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,092   copying CartiMorph_nnUNet/preprocessing/preprocessing.py -> build/lib/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,096   copying CartiMorph_nnUNet/preprocessing/sanity_checks.py -> build/lib/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,098   copying CartiMorph_nnUNet/preprocessing/cropping.py -> build/lib/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,101   creating build/lib/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,102   copying CartiMorph_nnUNet/postprocessing/__init__.py -> build/lib/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,104   copying CartiMorph_nnUNet/postprocessing/connected_components.py -> build/lib/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,106   copying CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py -> build/lib/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,109   creating build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,110   copying CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,111   copying CartiMorph_nnUNet/network_architecture/custom_modules/mish.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,113   copying CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,115   copying CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,116   copying CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,119   creating build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,120   copying CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,122   copying CartiMorph_nnUNet/training/data_augmentation/__init__.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,124   copying CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,126   copying CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,129   copying CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,131   copying CartiMorph_nnUNet/training/data_augmentation/downsampling.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,134   creating build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,134   copying CartiMorph_nnUNet/training/network_training/__init__.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,136   copying CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,139   copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,141   copying CartiMorph_nnUNet/training/network_training/network_trainer.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,144   copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,146   copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py -> build/lib/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,149   creating build/lib/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,150   copying CartiMorph_nnUNet/training/optimizer/__init__.py -> build/lib/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,151   copying CartiMorph_nnUNet/training/optimizer/ranger.py -> build/lib/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,154   creating build/lib/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,155   copying CartiMorph_nnUNet/training/dataloading/__init__.py -> build/lib/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,156   copying CartiMorph_nnUNet/training/dataloading/dataset_loading.py -> build/lib/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,159   creating build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,160   copying CartiMorph_nnUNet/training/loss_functions/dice_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,163   copying CartiMorph_nnUNet/training/loss_functions/__init__.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,164   copying CartiMorph_nnUNet/training/loss_functions/deep_supervision.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,166   copying CartiMorph_nnUNet/training/loss_functions/TopK_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,168   copying CartiMorph_nnUNet/training/loss_functions/crossentropy.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,169   copying CartiMorph_nnUNet/training/loss_functions/focal_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,172   creating build/lib/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,173   copying CartiMorph_nnUNet/training/learning_rate/__init__.py -> build/lib/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,174   copying CartiMorph_nnUNet/training/learning_rate/poly_lr.py -> build/lib/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,176   creating build/lib/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,177   copying CartiMorph_nnUNet/training/cascade_stuff/__init__.py -> build/lib/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,179   copying CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py -> build/lib/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,181   creating build/lib/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,182   copying CartiMorph_nnUNet/evaluation/model_selection/__init__.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,184   copying CartiMorph_nnUNet/evaluation/model_selection/ensemble.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,186   copying CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,189   creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,190   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,191   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,193   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,195   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,197   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,198   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,200   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,202   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,204   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,206   creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,207   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,209   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,211   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,214   creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,215   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,216   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,218   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,221   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,224   creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,225   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,227   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,229   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,232   creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,233   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,236   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,238   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,240   copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,293   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-01T14:53:39,294   !!

2023-10-01T14:53:39,295           ********************************************************************************
2023-10-01T14:53:39,296           Please avoid running ``setup.py`` directly.
2023-10-01T14:53:39,297           Instead, use pypa/build, pypa/installer or other
2023-10-01T14:53:39,298           standards-based tools.

2023-10-01T14:53:39,299           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-01T14:53:39,300           ********************************************************************************

2023-10-01T14:53:39,301   !!
2023-10-01T14:53:39,302     self.initialize_options()
2023-10-01T14:53:39,326   installing to build/bdist.linux-armv7l/wheel
2023-10-01T14:53:39,326   running install
2023-10-01T14:53:39,352   running install_lib
2023-10-01T14:53:39,377   creating build/bdist.linux-armv7l
2023-10-01T14:53:39,378   creating build/bdist.linux-armv7l/wheel
2023-10-01T14:53:39,379   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet
2023-10-01T14:53:39,380   copying build/lib/CartiMorph_nnUNet/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet
2023-10-01T14:53:39,383   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,384   copying build/lib/CartiMorph_nnUNet/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,386   copying build/lib/CartiMorph_nnUNet/network_architecture/neural_network.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,390   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,391   copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,393   copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/mish.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,394   copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,396   copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,397   copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules
2023-10-01T14:53:39,400   copying build/lib/CartiMorph_nnUNet/network_architecture/generic_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,402   copying build/lib/CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,404   copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,407   copying build/lib/CartiMorph_nnUNet/network_architecture/initialization.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,409   copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,411   copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture
2023-10-01T14:53:39,414   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training
2023-10-01T14:53:39,415   copying build/lib/CartiMorph_nnUNet/training/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training
2023-10-01T14:53:39,418   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,419   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,422   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,423   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,426   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,429   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,431   copying build/lib/CartiMorph_nnUNet/training/data_augmentation/downsampling.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation
2023-10-01T14:53:39,434   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,435   copying build/lib/CartiMorph_nnUNet/training/network_training/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,437   copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,440   copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,442   copying build/lib/CartiMorph_nnUNet/training/network_training/network_trainer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,448   copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,450   copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training
2023-10-01T14:53:39,453   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,454   copying build/lib/CartiMorph_nnUNet/training/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,455   copying build/lib/CartiMorph_nnUNet/training/optimizer/ranger.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer
2023-10-01T14:53:39,458   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,459   copying build/lib/CartiMorph_nnUNet/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,460   copying build/lib/CartiMorph_nnUNet/training/dataloading/dataset_loading.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading
2023-10-01T14:53:39,463   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,464   copying build/lib/CartiMorph_nnUNet/training/loss_functions/dice_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,467   copying build/lib/CartiMorph_nnUNet/training/loss_functions/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,468   copying build/lib/CartiMorph_nnUNet/training/loss_functions/deep_supervision.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,470   copying build/lib/CartiMorph_nnUNet/training/loss_functions/TopK_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,472   copying build/lib/CartiMorph_nnUNet/training/loss_functions/crossentropy.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,474   copying build/lib/CartiMorph_nnUNet/training/loss_functions/focal_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions
2023-10-01T14:53:39,476   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,477   copying build/lib/CartiMorph_nnUNet/training/learning_rate/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,479   copying build/lib/CartiMorph_nnUNet/training/learning_rate/poly_lr.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate
2023-10-01T14:53:39,481   copying build/lib/CartiMorph_nnUNet/training/model_restore.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training
2023-10-01T14:53:39,483   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,484   copying build/lib/CartiMorph_nnUNet/training/cascade_stuff/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,486   copying build/lib/CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff
2023-10-01T14:53:39,489   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,490   copying build/lib/CartiMorph_nnUNet/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,491   copying build/lib/CartiMorph_nnUNet/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,494   copying build/lib/CartiMorph_nnUNet/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,496   copying build/lib/CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation
2023-10-01T14:53:39,498   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,499   copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,501   copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/ensemble.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,503   copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection
2023-10-01T14:53:39,506   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run
2023-10-01T14:53:39,506   copying build/lib/CartiMorph_nnUNet/run/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run
2023-10-01T14:53:39,508   copying build/lib/CartiMorph_nnUNet/run/default_configuration.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run
2023-10-01T14:53:39,510   copying build/lib/CartiMorph_nnUNet/run/run_training.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run
2023-10-01T14:53:39,512   copying build/lib/CartiMorph_nnUNet/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run
2023-10-01T14:53:39,514   copying build/lib/CartiMorph_nnUNet/paths.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet
2023-10-01T14:53:39,516   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,517   copying build/lib/CartiMorph_nnUNet/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,519   copying build/lib/CartiMorph_nnUNet/dataset_conversion/utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion
2023-10-01T14:53:39,521   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,522   copying build/lib/CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,524   copying build/lib/CartiMorph_nnUNet/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,526   copying build/lib/CartiMorph_nnUNet/experiment_planning/utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,528   copying build/lib/CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,530   copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,532   copying build/lib/CartiMorph_nnUNet/experiment_planning/summarize_plans.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,535   copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,538   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,539   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,540   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,542   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,544   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs
2023-10-01T14:53:39,546   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,548   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,549   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,552   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,553   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,554   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,556   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,558   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization
2023-10-01T14:53:39,560   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,562   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,563   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,565   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,567   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size
2023-10-01T14:53:39,569   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,571   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,573   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,575   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,578   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,578   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,581   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,582   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,584   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing
2023-10-01T14:53:39,586   copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning
2023-10-01T14:53:39,588   copying build/lib/CartiMorph_nnUNet/experiment_planning/common_utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,590   copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,592   copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning
2023-10-01T14:53:39,595   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,596   copying build/lib/CartiMorph_nnUNet/utilities/folder_names.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,598   copying build/lib/CartiMorph_nnUNet/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,600   copying build/lib/CartiMorph_nnUNet/utilities/one_hot_encoding.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,602   copying build/lib/CartiMorph_nnUNet/utilities/task_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,604   copying build/lib/CartiMorph_nnUNet/utilities/nd_softmax.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,606   copying build/lib/CartiMorph_nnUNet/utilities/set_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,607   copying build/lib/CartiMorph_nnUNet/utilities/sitk_stuff.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,609   copying build/lib/CartiMorph_nnUNet/utilities/random_stuff.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,611   copying build/lib/CartiMorph_nnUNet/utilities/to_torch.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,612   copying build/lib/CartiMorph_nnUNet/utilities/tensor_utilities.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities
2023-10-01T14:53:39,615   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,615   copying build/lib/CartiMorph_nnUNet/inference/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,617   copying build/lib/CartiMorph_nnUNet/inference/predict.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,620   copying build/lib/CartiMorph_nnUNet/inference/segmentation_export.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,622   copying build/lib/CartiMorph_nnUNet/inference/ensemble_predictions.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,624   copying build/lib/CartiMorph_nnUNet/inference/predict_simple.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference
2023-10-01T14:53:39,627   copying build/lib/CartiMorph_nnUNet/configuration.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet
2023-10-01T14:53:39,629   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,630   copying build/lib/CartiMorph_nnUNet/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,632   copying build/lib/CartiMorph_nnUNet/preprocessing/preprocessing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,634   copying build/lib/CartiMorph_nnUNet/preprocessing/sanity_checks.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,637   copying build/lib/CartiMorph_nnUNet/preprocessing/cropping.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing
2023-10-01T14:53:39,639   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,640   copying build/lib/CartiMorph_nnUNet/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,642   copying build/lib/CartiMorph_nnUNet/postprocessing/connected_components.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,644   copying build/lib/CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing
2023-10-01T14:53:39,647   running install_egg_info
2023-10-01T14:53:39,706   running egg_info
2023-10-01T14:53:39,729   writing CartiMorph_nnUNet.egg-info/PKG-INFO
2023-10-01T14:53:39,733   writing dependency_links to CartiMorph_nnUNet.egg-info/dependency_links.txt
2023-10-01T14:53:39,735   writing entry points to CartiMorph_nnUNet.egg-info/entry_points.txt
2023-10-01T14:53:39,736   writing requirements to CartiMorph_nnUNet.egg-info/requires.txt
2023-10-01T14:53:39,738   writing top-level names to CartiMorph_nnUNet.egg-info/top_level.txt
2023-10-01T14:53:39,775   reading manifest file 'CartiMorph_nnUNet.egg-info/SOURCES.txt'
2023-10-01T14:53:39,780   adding license file 'LICENSE'
2023-10-01T14:53:39,787   writing manifest file 'CartiMorph_nnUNet.egg-info/SOURCES.txt'
2023-10-01T14:53:39,789   Copying CartiMorph_nnUNet.egg-info to build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet-1.7.15-py3.11.egg-info
2023-10-01T14:53:39,800   running install_scripts
2023-10-01T14:53:39,817   creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet-1.7.15.dist-info/WHEEL
2023-10-01T14:53:39,820   creating '/tmp/pip-wheel-k91p7qrq/CartiMorph_nnUNet-1.7.15-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-01T14:53:39,822   adding 'CartiMorph_nnUNet/__init__.py'
2023-10-01T14:53:39,824   adding 'CartiMorph_nnUNet/configuration.py'
2023-10-01T14:53:39,826   adding 'CartiMorph_nnUNet/paths.py'
2023-10-01T14:53:39,828   adding 'CartiMorph_nnUNet/dataset_conversion/__init__.py'
2023-10-01T14:53:39,830   adding 'CartiMorph_nnUNet/dataset_conversion/utils.py'
2023-10-01T14:53:39,832   adding 'CartiMorph_nnUNet/evaluation/__init__.py'
2023-10-01T14:53:39,834   adding 'CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py'
2023-10-01T14:53:39,837   adding 'CartiMorph_nnUNet/evaluation/evaluator.py'
2023-10-01T14:53:39,839   adding 'CartiMorph_nnUNet/evaluation/metrics.py'
2023-10-01T14:53:39,841   adding 'CartiMorph_nnUNet/evaluation/model_selection/__init__.py'
2023-10-01T14:53:39,843   adding 'CartiMorph_nnUNet/evaluation/model_selection/ensemble.py'
2023-10-01T14:53:39,845   adding 'CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py'
2023-10-01T14:53:39,848   adding 'CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py'
2023-10-01T14:53:39,849   adding 'CartiMorph_nnUNet/experiment_planning/__init__.py'
2023-10-01T14:53:39,851   adding 'CartiMorph_nnUNet/experiment_planning/common_utils.py'
2023-10-01T14:53:39,854   adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py'
2023-10-01T14:53:39,856   adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py'
2023-10-01T14:53:39,859   adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py'
2023-10-01T14:53:39,861   adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py'
2023-10-01T14:53:39,864   adding 'CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py'
2023-10-01T14:53:39,865   adding 'CartiMorph_nnUNet/experiment_planning/summarize_plans.py'
2023-10-01T14:53:39,867   adding 'CartiMorph_nnUNet/experiment_planning/utils.py'
2023-10-01T14:53:39,869   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py'
2023-10-01T14:53:39,871   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py'
2023-10-01T14:53:39,872   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py'
2023-10-01T14:53:39,874   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py'
2023-10-01T14:53:39,875   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py'
2023-10-01T14:53:39,876   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py'
2023-10-01T14:53:39,878   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py'
2023-10-01T14:53:39,879   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py'
2023-10-01T14:53:39,881   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py'
2023-10-01T14:53:39,882   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py'
2023-10-01T14:53:39,884   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py'
2023-10-01T14:53:39,885   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py'
2023-10-01T14:53:39,886   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py'
2023-10-01T14:53:39,888   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py'
2023-10-01T14:53:39,890   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py'
2023-10-01T14:53:39,891   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py'
2023-10-01T14:53:39,893   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py'
2023-10-01T14:53:39,894   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py'
2023-10-01T14:53:39,896   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py'
2023-10-01T14:53:39,898   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py'
2023-10-01T14:53:39,899   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py'
2023-10-01T14:53:39,900   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py'
2023-10-01T14:53:39,902   adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py'
2023-10-01T14:53:39,904   adding 'CartiMorph_nnUNet/inference/__init__.py'
2023-10-01T14:53:39,905   adding 'CartiMorph_nnUNet/inference/ensemble_predictions.py'
2023-10-01T14:53:39,909   adding 'CartiMorph_nnUNet/inference/predict.py'
2023-10-01T14:53:39,912   adding 'CartiMorph_nnUNet/inference/predict_simple.py'
2023-10-01T14:53:39,914   adding 'CartiMorph_nnUNet/inference/segmentation_export.py'
2023-10-01T14:53:39,915   adding 'CartiMorph_nnUNet/network_architecture/__init__.py'
2023-10-01T14:53:39,918   adding 'CartiMorph_nnUNet/network_architecture/generic_UNet.py'
2023-10-01T14:53:39,919   adding 'CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py'
2023-10-01T14:53:39,922   adding 'CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py'
2023-10-01T14:53:39,925   adding 'CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py'
2023-10-01T14:53:39,927   adding 'CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py'
2023-10-01T14:53:39,929   adding 'CartiMorph_nnUNet/network_architecture/initialization.py'
2023-10-01T14:53:39,932   adding 'CartiMorph_nnUNet/network_architecture/neural_network.py'
2023-10-01T14:53:39,934   adding 'CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py'
2023-10-01T14:53:39,936   adding 'CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py'
2023-10-01T14:53:39,938   adding 'CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py'
2023-10-01T14:53:39,939   adding 'CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py'
2023-10-01T14:53:39,940   adding 'CartiMorph_nnUNet/network_architecture/custom_modules/mish.py'
2023-10-01T14:53:39,942   adding 'CartiMorph_nnUNet/postprocessing/__init__.py'
2023-10-01T14:53:39,944   adding 'CartiMorph_nnUNet/postprocessing/connected_components.py'
2023-10-01T14:53:39,946   adding 'CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py'
2023-10-01T14:53:39,947   adding 'CartiMorph_nnUNet/preprocessing/__init__.py'
2023-10-01T14:53:39,949   adding 'CartiMorph_nnUNet/preprocessing/cropping.py'
2023-10-01T14:53:39,952   adding 'CartiMorph_nnUNet/preprocessing/preprocessing.py'
2023-10-01T14:53:39,955   adding 'CartiMorph_nnUNet/preprocessing/sanity_checks.py'
2023-10-01T14:53:39,957   adding 'CartiMorph_nnUNet/run/__init__.py'
2023-10-01T14:53:39,958   adding 'CartiMorph_nnUNet/run/default_configuration.py'
2023-10-01T14:53:39,959   adding 'CartiMorph_nnUNet/run/load_pretrained_weights.py'
2023-10-01T14:53:39,961   adding 'CartiMorph_nnUNet/run/run_training.py'
2023-10-01T14:53:39,963   adding 'CartiMorph_nnUNet/training/__init__.py'
2023-10-01T14:53:39,965   adding 'CartiMorph_nnUNet/training/model_restore.py'
2023-10-01T14:53:39,966   adding 'CartiMorph_nnUNet/training/cascade_stuff/__init__.py'
2023-10-01T14:53:39,968   adding 'CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py'
2023-10-01T14:53:39,969   adding 'CartiMorph_nnUNet/training/data_augmentation/__init__.py'
2023-10-01T14:53:39,970   adding 'CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py'
2023-10-01T14:53:39,972   adding 'CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py'
2023-10-01T14:53:39,974   adding 'CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py'
2023-10-01T14:53:39,975   adding 'CartiMorph_nnUNet/training/data_augmentation/downsampling.py'
2023-10-01T14:53:39,977   adding 'CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py'
2023-10-01T14:53:39,978   adding 'CartiMorph_nnUNet/training/dataloading/__init__.py'
2023-10-01T14:53:39,982   adding 'CartiMorph_nnUNet/training/dataloading/dataset_loading.py'
2023-10-01T14:53:39,983   adding 'CartiMorph_nnUNet/training/learning_rate/__init__.py'
2023-10-01T14:53:39,985   adding 'CartiMorph_nnUNet/training/learning_rate/poly_lr.py'
2023-10-01T14:53:39,986   adding 'CartiMorph_nnUNet/training/loss_functions/TopK_loss.py'
2023-10-01T14:53:39,987   adding 'CartiMorph_nnUNet/training/loss_functions/__init__.py'
2023-10-01T14:53:39,989   adding 'CartiMorph_nnUNet/training/loss_functions/crossentropy.py'
2023-10-01T14:53:39,990   adding 'CartiMorph_nnUNet/training/loss_functions/deep_supervision.py'
2023-10-01T14:53:39,992   adding 'CartiMorph_nnUNet/training/loss_functions/dice_loss.py'
2023-10-01T14:53:39,993   adding 'CartiMorph_nnUNet/training/loss_functions/focal_loss.py'
2023-10-01T14:53:39,995   adding 'CartiMorph_nnUNet/training/network_training/__init__.py'
2023-10-01T14:53:39,998   adding 'CartiMorph_nnUNet/training/network_training/network_trainer.py'
2023-10-01T14:53:40,003   adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py'
2023-10-01T14:53:40,006   adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py'
2023-10-01T14:53:40,008   adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py'
2023-10-01T14:53:40,011   adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py'
2023-10-01T14:53:40,013   adding 'CartiMorph_nnUNet/training/optimizer/__init__.py'
2023-10-01T14:53:40,014   adding 'CartiMorph_nnUNet/training/optimizer/ranger.py'
2023-10-01T14:53:40,016   adding 'CartiMorph_nnUNet/utilities/__init__.py'
2023-10-01T14:53:40,017   adding 'CartiMorph_nnUNet/utilities/folder_names.py'
2023-10-01T14:53:40,018   adding 'CartiMorph_nnUNet/utilities/nd_softmax.py'
2023-10-01T14:53:40,020   adding 'CartiMorph_nnUNet/utilities/one_hot_encoding.py'
2023-10-01T14:53:40,021   adding 'CartiMorph_nnUNet/utilities/random_stuff.py'
2023-10-01T14:53:40,022   adding 'CartiMorph_nnUNet/utilities/set_n_proc_DA.py'
2023-10-01T14:53:40,023   adding 'CartiMorph_nnUNet/utilities/sitk_stuff.py'
2023-10-01T14:53:40,025   adding 'CartiMorph_nnUNet/utilities/task_name_id_conversion.py'
2023-10-01T14:53:40,026   adding 'CartiMorph_nnUNet/utilities/tensor_utilities.py'
2023-10-01T14:53:40,027   adding 'CartiMorph_nnUNet/utilities/to_torch.py'
2023-10-01T14:53:40,030   adding 'CartiMorph_nnUNet-1.7.15.dist-info/LICENSE'
2023-10-01T14:53:40,031   adding 'CartiMorph_nnUNet-1.7.15.dist-info/METADATA'
2023-10-01T14:53:40,032   adding 'CartiMorph_nnUNet-1.7.15.dist-info/WHEEL'
2023-10-01T14:53:40,033   adding 'CartiMorph_nnUNet-1.7.15.dist-info/entry_points.txt'
2023-10-01T14:53:40,034   adding 'CartiMorph_nnUNet-1.7.15.dist-info/top_level.txt'
2023-10-01T14:53:40,037   adding 'CartiMorph_nnUNet-1.7.15.dist-info/RECORD'
2023-10-01T14:53:40,042   removing build/bdist.linux-armv7l/wheel
2023-10-01T14:53:40,185   Building wheel for cartimorph-nnunet (setup.py): finished with status 'done'
2023-10-01T14:53:40,191   Created wheel for cartimorph-nnunet: filename=CartiMorph_nnUNet-1.7.15-py3-none-any.whl size=253401 sha256=a090df9580207fb27b05d3be6fce4fa9c0c77413b484bf3b48b81fdb0410ca83
2023-10-01T14:53:40,192   Stored in directory: /tmp/pip-ephem-wheel-cache-0mbddtzs/wheels/bb/87/81/ae6296a96787d650d0be9496e6c1635de0bb84d5033367de5e
2023-10-01T14:53:40,205 Successfully built cartimorph-nnunet
2023-10-01T14:53:40,214 Removed build tracker: '/tmp/pip-build-tracker-3o79o637'