2023-10-01T18:16:16,859 Created temporary directory: /tmp/pip-build-tracker-h3j50wmh 2023-10-01T18:16:16,860 Initialized build tracking at /tmp/pip-build-tracker-h3j50wmh 2023-10-01T18:16:16,860 Created build tracker: /tmp/pip-build-tracker-h3j50wmh 2023-10-01T18:16:16,861 Entered build tracker: /tmp/pip-build-tracker-h3j50wmh 2023-10-01T18:16:16,861 Created temporary directory: /tmp/pip-wheel-1xsa7t0k 2023-10-01T18:16:16,865 Created temporary directory: /tmp/pip-ephem-wheel-cache-xzf0il6j 2023-10-01T18:16:16,886 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-01T18:16:16,890 2 location(s) to search for versions of sequana: 2023-10-01T18:16:16,890 * https://pypi.org/simple/sequana/ 2023-10-01T18:16:16,890 * https://www.piwheels.org/simple/sequana/ 2023-10-01T18:16:16,891 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-10-01T18:16:16,891 Getting page https://pypi.org/simple/sequana/ 2023-10-01T18:16:16,893 Found index url https://pypi.org/simple/ 2023-10-01T18:16:17,113 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-10-01T18:16:17,128 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-10-01T18:16:17,129 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-10-01T18:16:17,130 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-10-01T18:16:17,130 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.1 2023-10-01T18:16:17,131 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.2 2023-10-01T18:16:17,132 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.4 2023-10-01T18:16:17,133 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.5 2023-10-01T18:16:17,133 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.6 2023-10-01T18:16:17,134 Found link 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https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.11 2023-10-01T18:16:17,138 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.12 2023-10-01T18:16:17,139 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.13 2023-10-01T18:16:17,140 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.14 2023-10-01T18:16:17,140 Found link 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https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.19 2023-10-01T18:16:17,143 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2023-10-01T18:16:17,144 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2023-10-01T18:16:17,144 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2023-10-01T18:16:17,145 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2023-10-01T18:16:17,146 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2023-10-01T18:16:17,146 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2023-10-01T18:16:17,147 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2023-10-01T18:16:17,148 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-10-01T18:16:17,148 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-10-01T18:16:17,149 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-10-01T18:16:17,150 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-10-01T18:16:17,150 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2023-10-01T18:16:17,151 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2023-10-01T18:16:17,152 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2023-10-01T18:16:17,153 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2023-10-01T18:16:17,153 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2023-10-01T18:16:17,154 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2023-10-01T18:16:17,154 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2023-10-01T18:16:17,155 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2023-10-01T18:16:17,156 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2023-10-01T18:16:17,156 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2023-10-01T18:16:17,157 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2023-10-01T18:16:17,158 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2023-10-01T18:16:17,159 Found link 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2023-10-01T18:16:17,398 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,399 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,399 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,400 Skipping link: No binaries permitted for sequana: 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2023-10-01T18:16:17,402 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,403 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,403 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,404 Skipping link: No binaries permitted for sequana: 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2023-10-01T18:16:17,406 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.6-py3-none-any.whl#sha256=610326506e644e9df180931d8a20a48852a8196ba9c4d0e9aa6d1acb88d4e615 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,406 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,407 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,408 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,408 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,409 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,410 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,410 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-10-01T18:16:17,410 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-10-01T18:16:17,411 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-10-01T18:16:17,441 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-10-01T18:16:17,461 Collecting sequana==0.15.3 2023-10-01T18:16:17,463 Created temporary directory: /tmp/pip-unpack-ozeddl5a 2023-10-01T18:16:17,689 Downloading sequana-0.15.3.tar.gz (1.6 MB) 2023-10-01T18:16:18,711 Added sequana==0.15.3 from https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz to build tracker '/tmp/pip-build-tracker-h3j50wmh' 2023-10-01T18:16:18,712 Running setup.py (path:/tmp/pip-wheel-1xsa7t0k/sequana_5c0c8c2f62b54d8da179c18b98047f38/setup.py) egg_info for package sequana 2023-10-01T18:16:18,713 Created temporary directory: /tmp/pip-pip-egg-info-2ar5d9tb 2023-10-01T18:16:18,714 Preparing metadata (setup.py): started 2023-10-01T18:16:18,715 Running command python setup.py egg_info 2023-10-01T18:16:19,903 running egg_info 2023-10-01T18:16:19,905 creating /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info 2023-10-01T18:16:19,930 writing /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/PKG-INFO 2023-10-01T18:16:19,941 writing dependency_links to /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/dependency_links.txt 2023-10-01T18:16:19,944 writing entry points to /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/entry_points.txt 2023-10-01T18:16:19,948 writing requirements to /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/requires.txt 2023-10-01T18:16:19,949 writing top-level names to /tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/top_level.txt 2023-10-01T18:16:19,951 writing manifest file '/tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/SOURCES.txt' 2023-10-01T18:16:20,233 reading manifest file '/tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/SOURCES.txt' 2023-10-01T18:16:20,235 reading manifest template 'MANIFEST.in' 2023-10-01T18:16:20,237 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-10-01T18:16:20,239 warning: no previously-included files matching '*pyc' found under directory '*' 2023-10-01T18:16:20,383 warning: no files found matching 'test/requirements*txt' 2023-10-01T18:16:20,385 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-10-01T18:16:20,386 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T18:16:20,387 warning: no previously-included files matching '*' found under directory 'doc' 2023-10-01T18:16:20,388 warning: no previously-included files found matching 'sequana/rm2.py' 2023-10-01T18:16:20,388 adding license file 'LICENSE' 2023-10-01T18:16:20,400 writing manifest file '/tmp/pip-pip-egg-info-2ar5d9tb/sequana.egg-info/SOURCES.txt' 2023-10-01T18:16:20,513 Preparing metadata (setup.py): finished with status 'done' 2023-10-01T18:16:20,517 Source in /tmp/pip-wheel-1xsa7t0k/sequana_5c0c8c2f62b54d8da179c18b98047f38 has version 0.15.3, which satisfies requirement sequana==0.15.3 from https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz 2023-10-01T18:16:20,518 Removed sequana==0.15.3 from https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz from build tracker '/tmp/pip-build-tracker-h3j50wmh' 2023-10-01T18:16:20,525 Created temporary directory: /tmp/pip-unpack-lyewft_b 2023-10-01T18:16:20,527 Created temporary directory: /tmp/pip-unpack-dteidsyl 2023-10-01T18:16:20,616 Building wheels for collected packages: sequana 2023-10-01T18:16:20,620 Created temporary directory: /tmp/pip-wheel-47v2kgjn 2023-10-01T18:16:20,621 Building wheel for sequana (setup.py): started 2023-10-01T18:16:20,622 Destination directory: /tmp/pip-wheel-47v2kgjn 2023-10-01T18:16:20,622 Running command python setup.py bdist_wheel 2023-10-01T18:16:21,713 running bdist_wheel 2023-10-01T18:16:21,850 running build 2023-10-01T18:16:21,850 running build_py 2023-10-01T18:16:21,883 creating build 2023-10-01T18:16:21,884 creating build/lib 2023-10-01T18:16:21,884 creating build/lib/sequana 2023-10-01T18:16:21,886 copying sequana/cpg_islands.py -> build/lib/sequana 2023-10-01T18:16:21,888 copying sequana/canu_scanner.py -> build/lib/sequana 2023-10-01T18:16:21,890 copying sequana/contigs.py -> build/lib/sequana 2023-10-01T18:16:21,893 copying sequana/homer.py -> build/lib/sequana 2023-10-01T18:16:21,894 copying sequana/vst.py -> build/lib/sequana 2023-10-01T18:16:21,896 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-10-01T18:16:21,898 copying sequana/vcf_filter.py -> build/lib/sequana 2023-10-01T18:16:21,901 copying sequana/__init__.py -> build/lib/sequana 2023-10-01T18:16:21,902 copying sequana/taxonomy.py -> build/lib/sequana 2023-10-01T18:16:21,908 copying sequana/phantom.py -> build/lib/sequana 2023-10-01T18:16:21,910 copying sequana/lazy.py -> build/lib/sequana 2023-10-01T18:16:21,912 copying sequana/running_median.py -> build/lib/sequana 2023-10-01T18:16:21,915 copying sequana/demultiplex.py -> build/lib/sequana 2023-10-01T18:16:21,918 copying sequana/ribodesigner.py -> build/lib/sequana 2023-10-01T18:16:21,921 copying sequana/genbank.py -> build/lib/sequana 2023-10-01T18:16:21,923 copying sequana/krona.py -> build/lib/sequana 2023-10-01T18:16:21,925 copying sequana/assembly.py -> build/lib/sequana 2023-10-01T18:16:21,926 copying sequana/mixture.py -> build/lib/sequana 2023-10-01T18:16:21,929 copying sequana/protein.py -> build/lib/sequana 2023-10-01T18:16:21,930 copying sequana/errors.py -> build/lib/sequana 2023-10-01T18:16:21,932 copying sequana/kegg.py -> build/lib/sequana 2023-10-01T18:16:21,934 copying sequana/fastq.py -> build/lib/sequana 2023-10-01T18:16:21,940 copying sequana/laa.py -> build/lib/sequana 2023-10-01T18:16:21,944 copying sequana/codon.py -> build/lib/sequana 2023-10-01T18:16:21,946 copying sequana/gff3.py -> build/lib/sequana 2023-10-01T18:16:21,949 copying sequana/iuapc.py -> build/lib/sequana 2023-10-01T18:16:21,951 copying sequana/isoseq.py -> build/lib/sequana 2023-10-01T18:16:21,954 copying sequana/snpeff.py -> build/lib/sequana 2023-10-01T18:16:21,956 copying sequana/sequence.py -> build/lib/sequana 2023-10-01T18:16:21,959 copying sequana/bamtools.py -> build/lib/sequana 2023-10-01T18:16:21,962 copying sequana/mgi.py -> build/lib/sequana 2023-10-01T18:16:21,964 copying sequana/lazyimports.py -> build/lib/sequana 2023-10-01T18:16:21,966 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-10-01T18:16:21,968 copying sequana/stats.py -> build/lib/sequana 2023-10-01T18:16:21,971 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-10-01T18:16:21,973 copying sequana/databases.py -> build/lib/sequana 2023-10-01T18:16:21,977 copying sequana/coverage.py -> build/lib/sequana 2023-10-01T18:16:21,980 copying sequana/rnadiff.py -> build/lib/sequana 2023-10-01T18:16:21,983 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-10-01T18:16:21,985 copying sequana/frip.py -> build/lib/sequana 2023-10-01T18:16:21,986 copying sequana/itol.py -> build/lib/sequana 2023-10-01T18:16:21,988 copying sequana/idr.py -> build/lib/sequana 2023-10-01T18:16:21,991 copying sequana/summary.py -> build/lib/sequana 2023-10-01T18:16:21,994 copying sequana/kmer.py -> build/lib/sequana 2023-10-01T18:16:21,997 copying sequana/find_motif.py -> build/lib/sequana 2023-10-01T18:16:22,000 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-10-01T18:16:22,004 copying sequana/trf.py -> build/lib/sequana 2023-10-01T18:16:22,008 copying sequana/pacbio.py -> build/lib/sequana 2023-10-01T18:16:22,010 copying sequana/bed.py -> build/lib/sequana 2023-10-01T18:16:22,012 copying sequana/cigar.py -> build/lib/sequana 2023-10-01T18:16:22,014 copying sequana/sniffer.py -> build/lib/sequana 2023-10-01T18:16:22,016 copying sequana/salmon.py -> build/lib/sequana 2023-10-01T18:16:22,018 copying sequana/phred.py -> build/lib/sequana 2023-10-01T18:16:22,021 copying sequana/cnv.py -> build/lib/sequana 2023-10-01T18:16:22,023 copying sequana/compare.py -> build/lib/sequana 2023-10-01T18:16:22,026 copying sequana/fastqc.py -> build/lib/sequana 2023-10-01T18:16:22,030 copying sequana/tools.py -> build/lib/sequana 2023-10-01T18:16:22,033 copying sequana/featurecounts.py -> build/lib/sequana 2023-10-01T18:16:22,035 copying sequana/vcftools.py -> build/lib/sequana 2023-10-01T18:16:22,037 copying sequana/macs3.py -> build/lib/sequana 2023-10-01T18:16:22,039 copying sequana/bedtools.py -> build/lib/sequana 2023-10-01T18:16:22,042 copying sequana/iem.py -> build/lib/sequana 2023-10-01T18:16:22,044 copying sequana/criteria.py -> build/lib/sequana 2023-10-01T18:16:22,046 copying sequana/misc.py -> build/lib/sequana 2023-10-01T18:16:22,048 copying sequana/fasta.py -> build/lib/sequana 2023-10-01T18:16:22,050 copying sequana/mh.py -> build/lib/sequana 2023-10-01T18:16:22,052 copying sequana/datatools.py -> build/lib/sequana 2023-10-01T18:16:22,054 creating build/lib/sequana/scripts 2023-10-01T18:16:22,055 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-10-01T18:16:22,057 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-10-01T18:16:22,059 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-10-01T18:16:22,061 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-10-01T18:16:22,064 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-10-01T18:16:22,066 creating build/lib/sequana/plots 2023-10-01T18:16:22,067 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-10-01T18:16:22,069 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-10-01T18:16:22,071 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-10-01T18:16:22,074 creating build/lib/sequana/rules 2023-10-01T18:16:22,075 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-10-01T18:16:22,078 creating build/lib/sequana/resources 2023-10-01T18:16:22,079 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-10-01T18:16:22,081 creating build/lib/sequana/kraken 2023-10-01T18:16:22,083 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-10-01T18:16:22,084 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-10-01T18:16:22,087 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-10-01T18:16:22,089 creating build/lib/sequana/enrichment 2023-10-01T18:16:22,090 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,093 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,095 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,096 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,099 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,101 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,104 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,106 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,110 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-10-01T18:16:22,116 creating build/lib/sequana/modules_report 2023-10-01T18:16:22,117 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,118 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,120 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,122 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,124 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,127 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,130 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,133 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,135 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,137 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,139 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,141 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,143 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,145 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,148 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,161 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,171 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,175 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,177 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,179 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,181 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-10-01T18:16:22,184 creating build/lib/sequana/viz 2023-10-01T18:16:22,185 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-10-01T18:16:22,186 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-10-01T18:16:22,188 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-10-01T18:16:22,190 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-10-01T18:16:22,191 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-10-01T18:16:22,194 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-10-01T18:16:22,197 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-10-01T18:16:22,199 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-10-01T18:16:22,205 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-10-01T18:16:22,208 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-10-01T18:16:22,210 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-10-01T18:16:22,212 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-10-01T18:16:22,214 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-10-01T18:16:22,216 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-10-01T18:16:22,218 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-10-01T18:16:22,219 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-10-01T18:16:22,221 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-10-01T18:16:22,223 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-10-01T18:16:22,225 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-10-01T18:16:22,227 creating build/lib/sequana/utils 2023-10-01T18:16:22,228 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-10-01T18:16:22,229 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-10-01T18:16:22,231 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-10-01T18:16:22,232 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-10-01T18:16:22,233 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-10-01T18:16:22,235 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-10-01T18:16:22,237 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-10-01T18:16:22,240 creating build/lib/sequana/multiqc 2023-10-01T18:16:22,241 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,242 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,244 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,246 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,248 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,250 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,252 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,254 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,256 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,258 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,260 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,262 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-10-01T18:16:22,265 creating build/lib/sequana/scripts/main 2023-10-01T18:16:22,265 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,268 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,269 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,271 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,273 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,274 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,276 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,278 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,280 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,282 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,283 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,285 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,287 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,289 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,292 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,294 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,296 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,298 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,299 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,301 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,303 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,305 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,306 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-10-01T18:16:22,308 creating build/lib/sequana/rules/sambamba 2023-10-01T18:16:22,309 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2023-10-01T18:16:22,311 creating build/lib/sequana/rules/deeptools 2023-10-01T18:16:22,312 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-10-01T18:16:22,314 creating build/lib/sequana/rules/idr 2023-10-01T18:16:22,314 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-10-01T18:16:22,316 creating build/lib/sequana/rules/picard-tools 2023-10-01T18:16:22,317 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-10-01T18:16:22,319 creating build/lib/sequana/rules/SnpEff 2023-10-01T18:16:22,320 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-10-01T18:16:22,321 creating build/lib/sequana/rules/codecs 2023-10-01T18:16:22,322 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-10-01T18:16:22,324 creating build/lib/sequana/rules/Pacbio 2023-10-01T18:16:22,325 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-10-01T18:16:22,327 creating build/lib/sequana/resources/css 2023-10-01T18:16:22,328 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-10-01T18:16:22,330 creating build/lib/sequana/resources/canvas 2023-10-01T18:16:22,330 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-10-01T18:16:22,332 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-10-01T18:16:22,334 creating build/lib/sequana/resources/snpeff 2023-10-01T18:16:22,335 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-10-01T18:16:22,337 creating build/lib/sequana/resources/images 2023-10-01T18:16:22,337 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-10-01T18:16:22,339 creating build/lib/sequana/resources/examples 2023-10-01T18:16:22,340 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-10-01T18:16:22,342 creating build/lib/sequana/resources/templates 2023-10-01T18:16:22,343 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,345 creating build/lib/sequana/resources/js 2023-10-01T18:16:22,346 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-10-01T18:16:22,348 creating build/lib/sequana/resources/testing 2023-10-01T18:16:22,349 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,351 creating build/lib/sequana/resources/data 2023-10-01T18:16:22,352 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-10-01T18:16:22,354 creating build/lib/sequana/resources/doc 2023-10-01T18:16:22,355 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-10-01T18:16:22,357 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-10-01T18:16:22,358 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-10-01T18:16:22,360 creating build/lib/sequana/resources/doc/rnaseq_0 2023-10-01T18:16:22,361 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-10-01T18:16:22,363 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-10-01T18:16:22,364 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-10-01T18:16:22,366 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-01T18:16:22,367 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-01T18:16:22,369 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-01T18:16:22,369 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-01T18:16:22,371 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-01T18:16:22,372 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-01T18:16:22,517 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-10-01T18:16:22,519 creating build/lib/sequana/rules/indel_realigner 2023-10-01T18:16:22,519 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-10-01T18:16:22,522 creating build/lib/sequana/rules/format_contigs 2023-10-01T18:16:22,522 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-10-01T18:16:22,524 creating build/lib/sequana/rules/prokka 2023-10-01T18:16:22,525 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-10-01T18:16:22,527 creating build/lib/sequana/rules/summary_pipeline 2023-10-01T18:16:22,528 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-10-01T18:16:22,530 creating build/lib/sequana/rules/DupRadar 2023-10-01T18:16:22,531 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-10-01T18:16:22,533 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-10-01T18:16:22,534 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-10-01T18:16:22,536 creating build/lib/sequana/rules/pacbio_quality 2023-10-01T18:16:22,537 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-10-01T18:16:22,539 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-10-01T18:16:22,540 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-10-01T18:16:22,542 creating build/lib/sequana/rules/fastq_screen_report 2023-10-01T18:16:22,543 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-10-01T18:16:22,545 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-10-01T18:16:22,546 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-10-01T18:16:22,548 creating build/lib/sequana/rules/bam_quality_filter 2023-10-01T18:16:22,549 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-10-01T18:16:22,551 creating build/lib/sequana/rules/salmon_index 2023-10-01T18:16:22,552 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-10-01T18:16:22,554 creating build/lib/sequana/rules/freebayes 2023-10-01T18:16:22,555 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2023-10-01T18:16:22,558 creating build/lib/sequana/rules/bed_to_gff 2023-10-01T18:16:22,559 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-10-01T18:16:22,561 creating build/lib/sequana/rules/spades_get_fastq 2023-10-01T18:16:22,562 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-10-01T18:16:22,564 creating build/lib/sequana/rules/salmon_mapping 2023-10-01T18:16:22,565 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-10-01T18:16:22,567 creating build/lib/sequana/rules/SARTools 2023-10-01T18:16:22,568 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2023-10-01T18:16:22,570 creating build/lib/sequana/rules/samtools_depth 2023-10-01T18:16:22,571 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2023-10-01T18:16:22,573 creating build/lib/sequana/rules/samtools_sort 2023-10-01T18:16:22,574 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-10-01T18:16:22,576 creating build/lib/sequana/rules/fastq_screen 2023-10-01T18:16:22,577 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-10-01T18:16:22,579 creating build/lib/sequana/rules/multiqc2 2023-10-01T18:16:22,580 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2023-10-01T18:16:22,582 creating build/lib/sequana/rules/copy_multiple_files 2023-10-01T18:16:22,583 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2023-10-01T18:16:22,585 creating build/lib/sequana/rules/igvtools 2023-10-01T18:16:22,585 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-10-01T18:16:22,588 creating build/lib/sequana/rules/bamCoverage 2023-10-01T18:16:22,588 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-10-01T18:16:22,590 creating build/lib/sequana/rules/freebayes_vcf_filter 2023-10-01T18:16:22,591 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2023-10-01T18:16:22,593 creating build/lib/sequana/rules/rnaseqc 2023-10-01T18:16:22,594 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-10-01T18:16:22,597 creating build/lib/sequana/rules/spikes_counting 2023-10-01T18:16:22,597 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-10-01T18:16:22,600 creating build/lib/sequana/rules/fastp 2023-10-01T18:16:22,600 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2023-10-01T18:16:22,603 creating build/lib/sequana/rules/fastqc 2023-10-01T18:16:22,604 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2023-10-01T18:16:22,606 creating build/lib/sequana/rules/fastq_sampling 2023-10-01T18:16:22,606 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-10-01T18:16:22,608 creating build/lib/sequana/rules/revcomp_rule 2023-10-01T18:16:22,609 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-10-01T18:16:22,611 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-10-01T18:16:22,612 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-10-01T18:16:22,615 creating build/lib/sequana/rules/cutadapt 2023-10-01T18:16:22,616 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-10-01T18:16:22,618 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-10-01T18:16:22,619 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-10-01T18:16:22,621 creating build/lib/sequana/rules/multiqc 2023-10-01T18:16:22,622 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2023-10-01T18:16:22,625 creating build/lib/sequana/rules/sambamba/sambamba_filter 2023-10-01T18:16:22,625 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2023-10-01T18:16:22,628 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2023-10-01T18:16:22,629 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2023-10-01T18:16:22,631 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-10-01T18:16:22,632 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-10-01T18:16:22,634 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-10-01T18:16:22,635 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-10-01T18:16:22,637 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-10-01T18:16:22,637 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-10-01T18:16:22,639 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-10-01T18:16:22,640 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-10-01T18:16:22,642 creating build/lib/sequana/rules/idr/intersectionApproach 2023-10-01T18:16:22,643 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-10-01T18:16:22,645 creating build/lib/sequana/rules/idr/compute_idr 2023-10-01T18:16:22,646 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-10-01T18:16:22,648 creating build/lib/sequana/rules/idr/union_peaks 2023-10-01T18:16:22,648 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-10-01T18:16:22,650 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-10-01T18:16:22,651 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-10-01T18:16:22,653 creating build/lib/sequana/rules/idr/metrics_peaks 2023-10-01T18:16:22,654 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-10-01T18:16:22,656 creating build/lib/sequana/rules/idr/select_peaks 2023-10-01T18:16:22,657 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-10-01T18:16:22,659 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-10-01T18:16:22,660 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-10-01T18:16:22,663 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-01T18:16:22,664 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-01T18:16:22,666 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-10-01T18:16:22,667 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-10-01T18:16:22,669 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-01T18:16:22,670 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-01T18:16:22,672 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-10-01T18:16:22,673 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-10-01T18:16:22,675 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-10-01T18:16:22,676 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-10-01T18:16:22,678 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-10-01T18:16:22,679 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-10-01T18:16:22,681 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-10-01T18:16:22,682 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-10-01T18:16:22,684 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-10-01T18:16:22,685 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-10-01T18:16:22,687 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-10-01T18:16:22,688 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-10-01T18:16:22,690 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-10-01T18:16:22,691 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-10-01T18:16:22,693 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-10-01T18:16:22,693 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-10-01T18:16:22,696 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-10-01T18:16:22,696 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-10-01T18:16:22,698 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-10-01T18:16:22,699 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-10-01T18:16:22,701 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-10-01T18:16:22,702 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-10-01T18:16:22,705 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-10-01T18:16:22,706 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-10-01T18:16:22,708 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-10-01T18:16:22,709 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-10-01T18:16:22,711 creating build/lib/sequana/rules/kraken 2023-10-01T18:16:22,711 creating build/lib/sequana/rules/kraken/1.1 2023-10-01T18:16:22,712 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-10-01T18:16:22,715 creating build/lib/sequana/rules/kraken/1.0 2023-10-01T18:16:22,715 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-10-01T18:16:22,718 creating build/lib/sequana/rules/kraken/2.0 2023-10-01T18:16:22,718 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-10-01T18:16:22,721 creating build/lib/sequana/rules/multiqc/2.0 2023-10-01T18:16:22,721 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2023-10-01T18:16:22,724 creating build/lib/sequana/rules/SnpEff/snpeff 2023-10-01T18:16:22,724 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-10-01T18:16:22,725 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-10-01T18:16:22,727 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-10-01T18:16:22,728 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-10-01T18:16:22,730 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-10-01T18:16:22,731 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-01T18:16:22,732 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-01T18:16:22,735 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-01T18:16:22,736 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-01T18:16:22,738 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-10-01T18:16:22,740 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-10-01T18:16:22,743 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-10-01T18:16:22,745 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-10-01T18:16:22,747 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-10-01T18:16:22,751 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-10-01T18:16:22,754 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-10-01T18:16:22,756 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-10-01T18:16:22,759 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-10-01T18:16:22,762 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-10-01T18:16:22,765 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-10-01T18:16:22,767 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-10-01T18:16:22,769 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-10-01T18:16:22,772 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-10-01T18:16:22,775 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,776 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,778 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,780 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,783 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-10-01T18:16:22,785 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,791 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,798 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,802 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,807 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,811 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,814 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,817 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,820 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,823 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,826 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,830 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,833 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-10-01T18:16:22,836 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,838 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,841 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,843 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,846 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,854 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,857 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,864 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,867 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,869 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,887 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,889 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,892 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,894 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,896 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,899 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,901 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,903 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-10-01T18:16:22,906 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-10-01T18:16:22,908 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-10-01T18:16:22,911 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-10-01T18:16:22,914 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-10-01T18:16:22,920 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-10-01T18:16:22,931 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-10-01T18:16:22,934 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-10-01T18:16:22,942 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-10-01T18:16:22,990 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-01T18:16:22,991 !! 2023-10-01T18:16:22,992 ******************************************************************************** 2023-10-01T18:16:22,993 Please avoid running ``setup.py`` directly. 2023-10-01T18:16:22,993 Instead, use pypa/build, pypa/installer or other 2023-10-01T18:16:22,994 standards-based tools. 2023-10-01T18:16:22,995 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-01T18:16:22,996 ******************************************************************************** 2023-10-01T18:16:22,997 !! 2023-10-01T18:16:22,997 self.initialize_options() 2023-10-01T18:16:23,022 installing to build/bdist.linux-armv7l/wheel 2023-10-01T18:16:23,023 running install 2023-10-01T18:16:23,047 running install_lib 2023-10-01T18:16:23,074 creating build/bdist.linux-armv7l 2023-10-01T18:16:23,075 creating build/bdist.linux-armv7l/wheel 2023-10-01T18:16:23,078 creating build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,079 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,081 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,084 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,087 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,089 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,091 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,094 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,096 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,098 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,101 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,103 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,105 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,107 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,109 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,112 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,113 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,114 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,117 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,118 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,120 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,122 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,124 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,126 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,127 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,129 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,131 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,133 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,135 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,137 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,138 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,140 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,142 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,145 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,147 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,149 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,151 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,153 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,155 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,156 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,158 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,160 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-01T18:16:23,162 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,165 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,167 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-01T18:16:23,169 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,171 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,172 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,174 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,177 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,179 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,181 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,183 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,186 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,189 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,191 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-01T18:16:23,192 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-01T18:16:23,194 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-01T18:16:23,204 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-01T18:16:23,206 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,209 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,211 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,213 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,216 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,218 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,222 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,224 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,226 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,228 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,230 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,232 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,235 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,237 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,240 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,243 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-01T18:16:23,245 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-10-01T18:16:23,246 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-10-01T18:16:23,248 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-10-01T18:16:23,250 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-10-01T18:16:23,252 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-10-01T18:16:23,253 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-10-01T18:16:23,256 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-10-01T18:16:23,257 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-10-01T18:16:23,260 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-10-01T18:16:23,261 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-10-01T18:16:23,263 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-10-01T18:16:23,265 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-10-01T18:16:23,267 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-10-01T18:16:23,269 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-10-01T18:16:23,270 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-10-01T18:16:23,272 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-10-01T18:16:23,274 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-10-01T18:16:23,275 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-10-01T18:16:23,278 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-10-01T18:16:23,279 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-10-01T18:16:23,282 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-10-01T18:16:23,283 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-10-01T18:16:23,285 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-10-01T18:16:23,287 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-10-01T18:16:23,289 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-01T18:16:23,291 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-10-01T18:16:23,292 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-10-01T18:16:23,295 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-10-01T18:16:23,296 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-10-01T18:16:23,299 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-10-01T18:16:23,300 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-10-01T18:16:23,303 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-10-01T18:16:23,304 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-10-01T18:16:23,308 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-10-01T18:16:23,309 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-10-01T18:16:23,312 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-10-01T18:16:23,313 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-10-01T18:16:23,315 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-10-01T18:16:23,316 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-10-01T18:16:23,319 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-10-01T18:16:23,320 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-10-01T18:16:23,322 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-10-01T18:16:23,323 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-10-01T18:16:23,326 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-10-01T18:16:23,327 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-10-01T18:16:23,330 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-10-01T18:16:23,331 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-10-01T18:16:23,334 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-10-01T18:16:23,335 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-10-01T18:16:23,338 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-10-01T18:16:23,339 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-10-01T18:16:23,342 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-10-01T18:16:23,343 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-10-01T18:16:23,346 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-10-01T18:16:23,347 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-10-01T18:16:23,349 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-10-01T18:16:23,350 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-10-01T18:16:23,352 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-10-01T18:16:23,353 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-10-01T18:16:23,356 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-10-01T18:16:23,357 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-10-01T18:16:23,358 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-01T18:16:23,360 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-01T18:16:23,362 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-10-01T18:16:23,363 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-10-01T18:16:23,365 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-01T18:16:23,366 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-01T18:16:23,368 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-10-01T18:16:23,369 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-10-01T18:16:23,371 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-10-01T18:16:23,372 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-10-01T18:16:23,374 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-10-01T18:16:23,375 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-10-01T18:16:23,376 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-10-01T18:16:23,377 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-10-01T18:16:23,379 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-10-01T18:16:23,380 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-10-01T18:16:23,382 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-10-01T18:16:23,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-01T18:16:23,384 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-01T18:16:23,386 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-01T18:16:23,387 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-01T18:16:23,389 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-10-01T18:16:23,391 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-10-01T18:16:23,392 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-10-01T18:16:23,394 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-10-01T18:16:23,395 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-10-01T18:16:23,397 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-10-01T18:16:23,398 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-10-01T18:16:23,401 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-10-01T18:16:23,402 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-10-01T18:16:23,404 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-10-01T18:16:23,405 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-10-01T18:16:23,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-10-01T18:16:23,408 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-10-01T18:16:23,411 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-10-01T18:16:23,412 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-10-01T18:16:23,414 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-10-01T18:16:23,415 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-10-01T18:16:23,416 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-10-01T18:16:23,418 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-10-01T18:16:23,418 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-10-01T18:16:23,421 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-10-01T18:16:23,421 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-10-01T18:16:23,423 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-10-01T18:16:23,425 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-10-01T18:16:23,425 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-10-01T18:16:23,427 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-10-01T18:16:23,428 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-10-01T18:16:23,430 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-10-01T18:16:23,431 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-10-01T18:16:23,433 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-10-01T18:16:23,434 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-10-01T18:16:23,436 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-10-01T18:16:23,437 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-10-01T18:16:23,439 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-10-01T18:16:23,440 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-10-01T18:16:23,442 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-10-01T18:16:23,443 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-10-01T18:16:23,445 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-10-01T18:16:23,446 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-10-01T18:16:23,448 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-10-01T18:16:23,449 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-10-01T18:16:23,452 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-10-01T18:16:23,453 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-10-01T18:16:23,454 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-10-01T18:16:23,457 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-10-01T18:16:23,458 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-10-01T18:16:23,460 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-10-01T18:16:23,461 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-10-01T18:16:23,463 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-10-01T18:16:23,464 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-10-01T18:16:23,466 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-10-01T18:16:23,467 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-10-01T18:16:23,469 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-10-01T18:16:23,470 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-10-01T18:16:23,472 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-10-01T18:16:23,473 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-10-01T18:16:23,475 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-10-01T18:16:23,476 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-10-01T18:16:23,478 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-10-01T18:16:23,478 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-10-01T18:16:23,481 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-10-01T18:16:23,482 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-10-01T18:16:23,484 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-10-01T18:16:23,485 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-10-01T18:16:23,487 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-10-01T18:16:23,488 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-10-01T18:16:23,490 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-10-01T18:16:23,491 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-10-01T18:16:23,493 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-10-01T18:16:23,494 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-10-01T18:16:23,496 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-01T18:16:23,498 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-10-01T18:16:23,499 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-10-01T18:16:23,501 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-10-01T18:16:23,502 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-10-01T18:16:23,505 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-10-01T18:16:23,506 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-10-01T18:16:23,508 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-10-01T18:16:23,509 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-10-01T18:16:23,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-10-01T18:16:23,513 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-10-01T18:16:23,514 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,517 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-10-01T18:16:23,518 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,519 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,520 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,522 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,524 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,526 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,530 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-01T18:16:23,532 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-01T18:16:23,533 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-01T18:16:23,535 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-01T18:16:23,537 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-01T18:16:23,538 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-01T18:16:23,539 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-01T18:16:23,541 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-10-01T18:16:23,543 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,544 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,546 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,548 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,551 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,554 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-01T18:16:23,556 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-01T18:16:23,557 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-01T18:16:23,559 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-01T18:16:23,562 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-01T18:16:23,564 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-01T18:16:23,566 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,567 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,569 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,570 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,572 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,574 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,576 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-01T18:16:23,578 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,579 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,585 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,590 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,594 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,595 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,599 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,603 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,606 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,608 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,611 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,614 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,616 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,620 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,623 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-01T18:16:23,626 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,627 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,629 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,631 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,634 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,636 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,643 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,645 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,653 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,655 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,657 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,669 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,671 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,673 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,675 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,676 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,678 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,679 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,681 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,683 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-01T18:16:23,685 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,686 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,690 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,693 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,702 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,704 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,707 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,709 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,711 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,718 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-01T18:16:23,723 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-10-01T18:16:23,724 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-10-01T18:16:23,726 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-10-01T18:16:23,727 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-10-01T18:16:23,729 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-10-01T18:16:23,730 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-10-01T18:16:23,732 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-10-01T18:16:23,733 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-10-01T18:16:23,735 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-01T18:16:23,735 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-01T18:16:23,737 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-01T18:16:23,738 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-01T18:16:23,741 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-01T18:16:23,741 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-01T18:16:23,743 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,745 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,747 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,749 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,751 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,753 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,756 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,758 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,761 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,763 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,766 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-01T18:16:23,767 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-01T18:16:23,769 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-01T18:16:23,771 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-01T18:16:23,774 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,776 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,779 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,780 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,784 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,785 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,787 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,790 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,792 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,794 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,796 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,798 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-01T18:16:23,800 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,803 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,805 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,808 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,811 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,812 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,813 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,815 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,817 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,819 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,821 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,823 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,826 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,828 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,830 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,832 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,835 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,837 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,839 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,841 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,843 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,845 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,847 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,849 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,850 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,853 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-01T18:16:23,855 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,858 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,859 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,861 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,863 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,864 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,866 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,868 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,870 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,872 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,874 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,876 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,879 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,881 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,882 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,884 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,886 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,888 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,890 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,891 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,893 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-01T18:16:23,895 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,897 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,900 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,902 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,905 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,908 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,909 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,910 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,912 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,914 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,915 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,917 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,919 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-01T18:16:23,922 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,924 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,926 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,928 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,931 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,932 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,933 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,935 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,937 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,939 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,941 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,943 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,946 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,948 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,950 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,952 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,954 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,956 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-01T18:16:23,958 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-01T18:16:23,960 running install_egg_info 2023-10-01T18:16:23,991 running egg_info 2023-10-01T18:16:24,017 writing sequana.egg-info/PKG-INFO 2023-10-01T18:16:24,027 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-10-01T18:16:24,029 writing entry points to sequana.egg-info/entry_points.txt 2023-10-01T18:16:24,033 writing requirements to sequana.egg-info/requires.txt 2023-10-01T18:16:24,035 writing top-level names to sequana.egg-info/top_level.txt 2023-10-01T18:16:24,235 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-10-01T18:16:24,245 reading manifest template 'MANIFEST.in' 2023-10-01T18:16:24,248 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-10-01T18:16:24,250 warning: no previously-included files matching '*pyc' found under directory '*' 2023-10-01T18:16:24,677 warning: no files found matching 'test/requirements*txt' 2023-10-01T18:16:24,679 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-10-01T18:16:24,680 warning: no previously-included files matching '*' found under directory 'test' 2023-10-01T18:16:24,682 warning: no previously-included files matching '*' found under directory 'doc' 2023-10-01T18:16:24,683 warning: no previously-included files found matching 'sequana/rm2.py' 2023-10-01T18:16:24,684 adding license file 'LICENSE' 2023-10-01T18:16:24,700 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-10-01T18:16:24,703 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.15.3-py3.11.egg-info 2023-10-01T18:16:24,716 running install_scripts 2023-10-01T18:16:24,744 creating build/bdist.linux-armv7l/wheel/sequana-0.15.3.dist-info/WHEEL 2023-10-01T18:16:24,747 creating '/tmp/pip-wheel-47v2kgjn/sequana-0.15.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-01T18:16:24,749 adding 'sequana/__init__.py' 2023-10-01T18:16:24,751 adding 'sequana/assembly.py' 2023-10-01T18:16:24,759 adding 'sequana/bamtools.py' 2023-10-01T18:16:24,761 adding 'sequana/bed.py' 2023-10-01T18:16:24,770 adding 'sequana/bedtools.py' 2023-10-01T18:16:24,773 adding 'sequana/canu_scanner.py' 2023-10-01T18:16:24,775 adding 'sequana/cigar.py' 2023-10-01T18:16:24,776 adding 'sequana/cnv.py' 2023-10-01T18:16:24,778 adding 'sequana/codon.py' 2023-10-01T18:16:24,780 adding 'sequana/compare.py' 2023-10-01T18:16:24,793 adding 'sequana/contigs.py' 2023-10-01T18:16:24,795 adding 'sequana/coverage.py' 2023-10-01T18:16:24,796 adding 'sequana/cpg_islands.py' 2023-10-01T18:16:24,798 adding 'sequana/criteria.py' 2023-10-01T18:16:24,800 adding 'sequana/databases.py' 2023-10-01T18:16:24,802 adding 'sequana/datatools.py' 2023-10-01T18:16:24,804 adding 'sequana/demultiplex.py' 2023-10-01T18:16:24,805 adding 'sequana/errors.py' 2023-10-01T18:16:24,807 adding 'sequana/fasta.py' 2023-10-01T18:16:24,809 adding 'sequana/fasta_gff_correction.py' 2023-10-01T18:16:24,814 adding 'sequana/fastq.py' 2023-10-01T18:16:24,816 adding 'sequana/fastqc.py' 2023-10-01T18:16:24,818 adding 'sequana/featurecounts.py' 2023-10-01T18:16:24,820 adding 'sequana/find_motif.py' 2023-10-01T18:16:24,822 adding 'sequana/freebayes_bcf_filter.py' 2023-10-01T18:16:24,824 adding 'sequana/freebayes_vcf_filter.py' 2023-10-01T18:16:24,825 adding 'sequana/frip.py' 2023-10-01T18:16:24,827 adding 'sequana/genbank.py' 2023-10-01T18:16:24,830 adding 'sequana/gff3.py' 2023-10-01T18:16:24,831 adding 'sequana/gtf_fixer.py' 2023-10-01T18:16:24,833 adding 'sequana/homer.py' 2023-10-01T18:16:24,834 adding 'sequana/idr.py' 2023-10-01T18:16:24,836 adding 'sequana/iem.py' 2023-10-01T18:16:24,839 adding 'sequana/isoseq.py' 2023-10-01T18:16:24,840 adding 'sequana/itol.py' 2023-10-01T18:16:24,842 adding 'sequana/iuapc.py' 2023-10-01T18:16:24,843 adding 'sequana/kegg.py' 2023-10-01T18:16:24,844 adding 'sequana/kmer.py' 2023-10-01T18:16:24,846 adding 'sequana/krona.py' 2023-10-01T18:16:24,847 adding 'sequana/laa.py' 2023-10-01T18:16:24,849 adding 'sequana/lazy.py' 2023-10-01T18:16:24,850 adding 'sequana/lazyimports.py' 2023-10-01T18:16:24,852 adding 'sequana/macs3.py' 2023-10-01T18:16:24,853 adding 'sequana/mgi.py' 2023-10-01T18:16:24,854 adding 'sequana/mh.py' 2023-10-01T18:16:24,856 adding 'sequana/misc.py' 2023-10-01T18:16:24,858 adding 'sequana/mixture.py' 2023-10-01T18:16:24,862 adding 'sequana/pacbio.py' 2023-10-01T18:16:24,865 adding 'sequana/pacbio_amplicon.py' 2023-10-01T18:16:24,867 adding 'sequana/phantom.py' 2023-10-01T18:16:24,869 adding 'sequana/phred.py' 2023-10-01T18:16:24,870 adding 'sequana/protein.py' 2023-10-01T18:16:24,872 adding 'sequana/ribodesigner.py' 2023-10-01T18:16:24,878 adding 'sequana/rnadiff.py' 2023-10-01T18:16:24,880 adding 'sequana/running_median.py' 2023-10-01T18:16:24,881 adding 'sequana/salmon.py' 2023-10-01T18:16:24,885 adding 'sequana/sequence.py' 2023-10-01T18:16:24,887 adding 'sequana/sniffer.py' 2023-10-01T18:16:24,889 adding 'sequana/snpeff.py' 2023-10-01T18:16:24,890 adding 'sequana/stats.py' 2023-10-01T18:16:24,892 adding 'sequana/summary.py' 2023-10-01T18:16:24,894 adding 'sequana/taxonomy.py' 2023-10-01T18:16:24,897 adding 'sequana/tools.py' 2023-10-01T18:16:24,899 adding 'sequana/trf.py' 2023-10-01T18:16:24,901 adding 'sequana/vcf_filter.py' 2023-10-01T18:16:24,904 adding 'sequana/vcftools.py' 2023-10-01T18:16:24,906 adding 'sequana/vst.py' 2023-10-01T18:16:24,907 adding 'sequana/enrichment/__init__.py' 2023-10-01T18:16:24,909 adding 'sequana/enrichment/gsea.py' 2023-10-01T18:16:24,912 adding 'sequana/enrichment/kegg.py' 2023-10-01T18:16:24,914 adding 'sequana/enrichment/mart.py' 2023-10-01T18:16:24,915 adding 'sequana/enrichment/ontology.py' 2023-10-01T18:16:24,918 adding 'sequana/enrichment/panther.py' 2023-10-01T18:16:24,920 adding 'sequana/enrichment/plot_go_terms.py' 2023-10-01T18:16:24,921 adding 'sequana/enrichment/quickgo.py' 2023-10-01T18:16:24,923 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-10-01T18:16:24,925 adding 'sequana/kraken/__init__.py' 2023-10-01T18:16:24,931 adding 'sequana/kraken/analysis.py' 2023-10-01T18:16:24,933 adding 'sequana/kraken/multikraken.py' 2023-10-01T18:16:24,934 adding 'sequana/modules_report/__init__.py' 2023-10-01T18:16:24,936 adding 'sequana/modules_report/bamqc.py' 2023-10-01T18:16:24,938 adding 'sequana/modules_report/base_module.py' 2023-10-01T18:16:24,939 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-10-01T18:16:24,942 adding 'sequana/modules_report/coverage.py' 2023-10-01T18:16:24,945 adding 'sequana/modules_report/cutadapt.py' 2023-10-01T18:16:24,947 adding 'sequana/modules_report/fastq_stats.py' 2023-10-01T18:16:24,949 adding 'sequana/modules_report/fastqc.py' 2023-10-01T18:16:24,950 adding 'sequana/modules_report/joint_calling.py' 2023-10-01T18:16:24,952 adding 'sequana/modules_report/kegg_enrichment.py' 2023-10-01T18:16:24,954 adding 'sequana/modules_report/kraken.py' 2023-10-01T18:16:24,957 adding 'sequana/modules_report/multi_summary.py' 2023-10-01T18:16:24,958 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-10-01T18:16:24,960 adding 'sequana/modules_report/panther_enrichment.py' 2023-10-01T18:16:24,962 adding 'sequana/modules_report/phix.py' 2023-10-01T18:16:24,963 adding 'sequana/modules_report/quast.py' 2023-10-01T18:16:24,966 adding 'sequana/modules_report/rnadiff.py' 2023-10-01T18:16:24,968 adding 'sequana/modules_report/summary.py' 2023-10-01T18:16:24,969 adding 'sequana/modules_report/trf.py' 2023-10-01T18:16:24,971 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-10-01T18:16:24,972 adding 'sequana/modules_report/variant_calling.py' 2023-10-01T18:16:24,974 adding 'sequana/multiqc/__init__.py' 2023-10-01T18:16:24,976 adding 'sequana/multiqc/bamtools_stats.py' 2023-10-01T18:16:24,977 adding 'sequana/multiqc/config.py' 2023-10-01T18:16:24,979 adding 'sequana/multiqc/coverage.py' 2023-10-01T18:16:24,980 adding 'sequana/multiqc/isoseq.py' 2023-10-01T18:16:24,982 adding 'sequana/multiqc/isoseq_qc.py' 2023-10-01T18:16:24,984 adding 'sequana/multiqc/kraken.py' 2023-10-01T18:16:24,985 adding 'sequana/multiqc/laa.py' 2023-10-01T18:16:24,986 adding 'sequana/multiqc/multiqc_config.yaml' 2023-10-01T18:16:24,988 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-10-01T18:16:24,989 adding 'sequana/multiqc/pacbio_qc.py' 2023-10-01T18:16:24,991 adding 'sequana/multiqc/plots.py' 2023-10-01T18:16:24,992 adding 'sequana/multiqc/quality_control.py' 2023-10-01T18:16:24,994 adding 'sequana/plots/__init__.py' 2023-10-01T18:16:24,995 adding 'sequana/plots/canvasjs_base.py' 2023-10-01T18:16:24,997 adding 'sequana/plots/canvasjs_linegraph.py' 2023-10-01T18:16:24,998 adding 'sequana/resources/__init__.py' 2023-10-01T18:16:24,999 adding 'sequana/resources/canvas/__init__.py' 2023-10-01T18:16:25,001 adding 'sequana/resources/canvas/bar.py' 2023-10-01T18:16:25,002 adding 'sequana/resources/css/__init__.py' 2023-10-01T18:16:25,011 adding 'sequana/resources/css/bootstrap.min.css' 2023-10-01T18:16:25,014 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-10-01T18:16:25,016 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-10-01T18:16:25,017 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-10-01T18:16:25,018 adding 'sequana/resources/css/report.css' 2023-10-01T18:16:25,032 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-10-01T18:16:25,046 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-10-01T18:16:25,048 adding 'sequana/resources/data/README.rst' 2023-10-01T18:16:25,049 adding 'sequana/resources/data/__init__.py' 2023-10-01T18:16:25,107 adding 'sequana/resources/data/kegg.csv' 2023-10-01T18:16:25,117 adding 'sequana/resources/data/measles.fa' 2023-10-01T18:16:25,119 adding 'sequana/resources/data/panther.csv' 2023-10-01T18:16:25,122 adding 'sequana/resources/data/phiX174.fa' 2023-10-01T18:16:25,182 adding 'sequana/resources/data/virus.bed' 2023-10-01T18:16:25,185 adding 'sequana/resources/doc/__init__.py' 2023-10-01T18:16:25,187 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-10-01T18:16:25,188 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-10-01T18:16:25,189 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-10-01T18:16:25,190 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-10-01T18:16:25,192 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-10-01T18:16:25,193 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-10-01T18:16:25,194 adding 'sequana/resources/examples/README.rst' 2023-10-01T18:16:25,195 adding 'sequana/resources/examples/__init__.py' 2023-10-01T18:16:25,198 adding 'sequana/resources/examples/test.fastq.gz' 2023-10-01T18:16:25,199 adding 'sequana/resources/examples/test_kraken.out' 2023-10-01T18:16:25,205 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-10-01T18:16:25,206 adding 'sequana/resources/images/__init__.py' 2023-10-01T18:16:25,215 adding 'sequana/resources/images/logo_256x256.png' 2023-10-01T18:16:25,217 adding 'sequana/resources/images/no_data.jpg' 2023-10-01T18:16:25,219 adding 'sequana/resources/images/no_data.png' 2023-10-01T18:16:25,220 adding 'sequana/resources/js/__init__.py' 2023-10-01T18:16:25,225 adding 'sequana/resources/js/bootstrap.min.js' 2023-10-01T18:16:25,228 adding 'sequana/resources/js/buttons.html5.min.js' 2023-10-01T18:16:25,229 adding 'sequana/resources/js/buttons.print.min.js' 2023-10-01T18:16:25,251 adding 'sequana/resources/js/canvasjs.min.js' 2023-10-01T18:16:25,256 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-10-01T18:16:25,297 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-10-01T18:16:25,311 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-10-01T18:16:25,324 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-10-01T18:16:25,336 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-10-01T18:16:25,348 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-10-01T18:16:25,350 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-10-01T18:16:25,351 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-10-01T18:16:25,354 adding 'sequana/resources/js/papaparse.min.js' 2023-10-01T18:16:25,355 adding 'sequana/resources/snpeff/__init__.py' 2023-10-01T18:16:25,356 adding 'sequana/resources/snpeff/snpEff.config' 2023-10-01T18:16:25,358 adding 'sequana/resources/templates/__init__.py' 2023-10-01T18:16:25,359 adding 'sequana/resources/templates/base.html' 2023-10-01T18:16:25,360 adding 'sequana/resources/templates/joint_calling.html' 2023-10-01T18:16:25,362 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-10-01T18:16:25,363 adding 'sequana/resources/templates/standard.html' 2023-10-01T18:16:25,364 adding 'sequana/resources/templates/vcf_diff.html' 2023-10-01T18:16:25,366 adding 'sequana/resources/testing/README.rst' 2023-10-01T18:16:25,367 adding 'sequana/resources/testing/__init__.py' 2023-10-01T18:16:25,368 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-10-01T18:16:25,376 adding 'sequana/resources/testing/test.fasta' 2023-10-01T18:16:25,388 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-10-01T18:16:25,393 adding 'sequana/resources/testing/test_blast_local.xml' 2023-10-01T18:16:25,427 adding 'sequana/resources/testing/test_coverage.csv' 2023-10-01T18:16:25,431 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-10-01T18:16:25,432 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-10-01T18:16:25,433 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-10-01T18:16:25,434 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-10-01T18:16:25,435 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-10-01T18:16:25,437 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-10-01T18:16:25,438 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-10-01T18:16:25,439 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-10-01T18:16:25,440 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-10-01T18:16:25,441 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-10-01T18:16:25,672 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-10-01T18:16:25,678 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-10-01T18:16:25,680 adding 'sequana/rules/README.rst' 2023-10-01T18:16:25,681 adding 'sequana/rules/__init__.py' 2023-10-01T18:16:25,682 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-10-01T18:16:25,684 adding 'sequana/rules/Pacbio/__init__.py' 2023-10-01T18:16:25,685 adding 'sequana/rules/SARTools/SARTools.rules' 2023-10-01T18:16:25,687 adding 'sequana/rules/SnpEff/__init__.py' 2023-10-01T18:16:25,688 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-10-01T18:16:25,690 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-10-01T18:16:25,692 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-10-01T18:16:25,694 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-10-01T18:16:25,695 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-10-01T18:16:25,697 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-10-01T18:16:25,698 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-10-01T18:16:25,700 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-10-01T18:16:25,701 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-10-01T18:16:25,702 adding 'sequana/rules/codecs/__init__.py' 2023-10-01T18:16:25,704 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-10-01T18:16:25,705 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-10-01T18:16:25,706 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-10-01T18:16:25,708 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-10-01T18:16:25,709 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-10-01T18:16:25,710 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-10-01T18:16:25,712 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-10-01T18:16:25,713 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-10-01T18:16:25,715 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-10-01T18:16:25,716 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-10-01T18:16:25,717 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2023-10-01T18:16:25,719 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-10-01T18:16:25,720 adding 'sequana/rules/deeptools/__init__.py' 2023-10-01T18:16:25,722 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-10-01T18:16:25,723 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-10-01T18:16:25,725 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-10-01T18:16:25,726 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-10-01T18:16:25,727 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-10-01T18:16:25,729 adding 'sequana/rules/fastp/fastp.rules' 2023-10-01T18:16:25,730 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-10-01T18:16:25,732 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-10-01T18:16:25,733 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-10-01T18:16:25,735 adding 'sequana/rules/fastqc/fastqc.rules' 2023-10-01T18:16:25,736 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-10-01T18:16:25,738 adding 'sequana/rules/freebayes/freebayes.rules' 2023-10-01T18:16:25,739 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-10-01T18:16:25,741 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2023-10-01T18:16:25,742 adding 'sequana/rules/idr/__init__.py' 2023-10-01T18:16:25,744 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-10-01T18:16:25,745 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-10-01T18:16:25,747 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-10-01T18:16:25,749 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-10-01T18:16:25,750 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-10-01T18:16:25,752 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-10-01T18:16:25,753 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-10-01T18:16:25,755 adding 'sequana/rules/igvtools/igvtools.rules' 2023-10-01T18:16:25,756 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-10-01T18:16:25,758 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-10-01T18:16:25,760 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-10-01T18:16:25,761 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-10-01T18:16:25,763 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-10-01T18:16:25,765 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-10-01T18:16:25,766 adding 'sequana/rules/multiqc/multiqc.rules' 2023-10-01T18:16:25,768 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2023-10-01T18:16:25,769 adding 'sequana/rules/multiqc2/multiqc2.rules' 2023-10-01T18:16:25,771 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-10-01T18:16:25,772 adding 'sequana/rules/picard-tools/__init__.py' 2023-10-01T18:16:25,773 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-10-01T18:16:25,775 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-10-01T18:16:25,776 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-10-01T18:16:25,778 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-10-01T18:16:25,779 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-10-01T18:16:25,780 adding 'sequana/rules/prokka/prokka.rules' 2023-10-01T18:16:25,782 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-10-01T18:16:25,783 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-10-01T18:16:25,785 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-10-01T18:16:25,786 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-10-01T18:16:25,788 adding 'sequana/rules/sambamba/__init__.py' 2023-10-01T18:16:25,789 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2023-10-01T18:16:25,791 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2023-10-01T18:16:25,792 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2023-10-01T18:16:25,794 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-10-01T18:16:25,795 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-10-01T18:16:25,797 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-10-01T18:16:25,798 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-10-01T18:16:25,799 adding 'sequana/scripts/__init__.py' 2023-10-01T18:16:25,801 adding 'sequana/scripts/common.py' 2023-10-01T18:16:25,803 adding 'sequana/scripts/coverage.py' 2023-10-01T18:16:25,805 adding 'sequana/scripts/substractor.py' 2023-10-01T18:16:25,807 adding 'sequana/scripts/taxonomy.py' 2023-10-01T18:16:25,808 adding 'sequana/scripts/main/__init__.py' 2023-10-01T18:16:25,810 adding 'sequana/scripts/main/biomart.py' 2023-10-01T18:16:25,811 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-10-01T18:16:25,813 adding 'sequana/scripts/main/enrichment_panther.py' 2023-10-01T18:16:25,814 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-10-01T18:16:25,816 adding 'sequana/scripts/main/fasta.py' 2023-10-01T18:16:25,817 adding 'sequana/scripts/main/fastq.py' 2023-10-01T18:16:25,818 adding 'sequana/scripts/main/feature_count.py' 2023-10-01T18:16:25,820 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-10-01T18:16:25,821 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-10-01T18:16:25,822 adding 'sequana/scripts/main/gtf_fixer.py' 2023-10-01T18:16:25,824 adding 'sequana/scripts/main/lane_merging.py' 2023-10-01T18:16:25,825 adding 'sequana/scripts/main/main.py' 2023-10-01T18:16:25,827 adding 'sequana/scripts/main/mapping.py' 2023-10-01T18:16:25,828 adding 'sequana/scripts/main/ribodesigner.py' 2023-10-01T18:16:25,830 adding 'sequana/scripts/main/rnadiff.py' 2023-10-01T18:16:25,832 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-10-01T18:16:25,833 adding 'sequana/scripts/main/salmon.py' 2023-10-01T18:16:25,834 adding 'sequana/scripts/main/samplesheet.py' 2023-10-01T18:16:25,836 adding 'sequana/scripts/main/summary.py' 2023-10-01T18:16:25,837 adding 'sequana/scripts/main/taxonomy.py' 2023-10-01T18:16:25,838 adding 'sequana/scripts/main/utils.py' 2023-10-01T18:16:25,840 adding 'sequana/scripts/main/variants_comparison.py' 2023-10-01T18:16:25,841 adding 'sequana/utils/__init__.py' 2023-10-01T18:16:25,843 adding 'sequana/utils/config.py' 2023-10-01T18:16:25,845 adding 'sequana/utils/datatables_js.py' 2023-10-01T18:16:25,846 adding 'sequana/utils/df2html.py' 2023-10-01T18:16:25,848 adding 'sequana/utils/pandas.py' 2023-10-01T18:16:25,849 adding 'sequana/utils/singleton.py' 2023-10-01T18:16:25,850 adding 'sequana/utils/tree.py' 2023-10-01T18:16:25,851 adding 'sequana/viz/__init__.py' 2023-10-01T18:16:25,852 adding 'sequana/viz/anova.py' 2023-10-01T18:16:25,854 adding 'sequana/viz/boxplot.py' 2023-10-01T18:16:25,855 adding 'sequana/viz/clusterisation.py' 2023-10-01T18:16:25,856 adding 'sequana/viz/core.py' 2023-10-01T18:16:25,858 adding 'sequana/viz/corrplot.py' 2023-10-01T18:16:25,860 adding 'sequana/viz/dendogram.py' 2023-10-01T18:16:25,863 adding 'sequana/viz/heatmap.py' 2023-10-01T18:16:25,864 adding 'sequana/viz/hinton.py' 2023-10-01T18:16:25,865 adding 'sequana/viz/hist2d.py' 2023-10-01T18:16:25,867 adding 'sequana/viz/imshow.py' 2023-10-01T18:16:25,868 adding 'sequana/viz/isomap.py' 2023-10-01T18:16:25,869 adding 'sequana/viz/linkage.py' 2023-10-01T18:16:25,871 adding 'sequana/viz/mds.py' 2023-10-01T18:16:25,872 adding 'sequana/viz/pca.py' 2023-10-01T18:16:25,873 adding 'sequana/viz/plotly.py' 2023-10-01T18:16:25,875 adding 'sequana/viz/scatter.py' 2023-10-01T18:16:25,877 adding 'sequana/viz/venn.py' 2023-10-01T18:16:25,878 adding 'sequana/viz/volcano.py' 2023-10-01T18:16:25,880 adding 'sequana-0.15.3.dist-info/LICENSE' 2023-10-01T18:16:25,882 adding 'sequana-0.15.3.dist-info/METADATA' 2023-10-01T18:16:25,883 adding 'sequana-0.15.3.dist-info/WHEEL' 2023-10-01T18:16:25,884 adding 'sequana-0.15.3.dist-info/entry_points.txt' 2023-10-01T18:16:25,886 adding 'sequana-0.15.3.dist-info/top_level.txt' 2023-10-01T18:16:25,891 adding 'sequana-0.15.3.dist-info/RECORD' 2023-10-01T18:16:25,965 removing build/bdist.linux-armv7l/wheel 2023-10-01T18:16:26,184 Building wheel for sequana (setup.py): finished with status 'done' 2023-10-01T18:16:26,209 Created wheel for sequana: filename=sequana-0.15.3-py3-none-any.whl size=1775138 sha256=bf54766d484d04f1bb6fd2e58afd5888fa68da340a1a00cc1f2d3032dc63e291 2023-10-01T18:16:26,210 Stored in directory: /tmp/pip-ephem-wheel-cache-xzf0il6j/wheels/e2/94/46/9988d1a3913cbcebb8c9b512f399622eacc454cb8271b96ed1 2023-10-01T18:16:26,235 Successfully built sequana 2023-10-01T18:16:26,293 Removed build tracker: '/tmp/pip-build-tracker-h3j50wmh'