2023-10-02T01:28:52,774 Created temporary directory: /tmp/pip-build-tracker-a67nwn0s
2023-10-02T01:28:52,775 Initialized build tracking at /tmp/pip-build-tracker-a67nwn0s
2023-10-02T01:28:52,776 Created build tracker: /tmp/pip-build-tracker-a67nwn0s
2023-10-02T01:28:52,776 Entered build tracker: /tmp/pip-build-tracker-a67nwn0s
2023-10-02T01:28:52,777 Created temporary directory: /tmp/pip-wheel-8olfk64z
2023-10-02T01:28:52,780 Created temporary directory: /tmp/pip-ephem-wheel-cache-0gfb25xf
2023-10-02T01:28:52,802 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T01:28:52,805 2 location(s) to search for versions of moleculekit:
2023-10-02T01:28:52,805 * https://pypi.org/simple/moleculekit/
2023-10-02T01:28:52,805 * https://www.piwheels.org/simple/moleculekit/
2023-10-02T01:28:52,806 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-02T01:28:52,807 Getting page https://pypi.org/simple/moleculekit/
2023-10-02T01:28:52,808 Found index url https://pypi.org/simple/
2023-10-02T01:28:52,969 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-02T01:28:53,006   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,006   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-02T01:28:53,007   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,008   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-02T01:28:53,008   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,009   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-02T01:28:53,010   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,010   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-02T01:28:53,011   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,012   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-02T01:28:53,013   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,013   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-02T01:28:53,014   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-02T01:28:53,016   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,016   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-02T01:28:53,017   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-02T01:28:53,018   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,018   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-02T01:28:53,019   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,020   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-02T01:28:53,020   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,021   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-02T01:28:53,022   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,022   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-02T01:28:53,023   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,024   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-02T01:28:53,024   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,025   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-02T01:28:53,026   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,027   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-02T01:28:53,027   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,028   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-02T01:28:53,028   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,029   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-02T01:28:53,029   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,030   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-02T01:28:53,031   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,032   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-02T01:28:53,032   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,033   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-02T01:28:53,034   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,034   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-02T01:28:53,035   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,036   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-02T01:28:53,037   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,038   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-02T01:28:53,038   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,039   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-02T01:28:53,039   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,040   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-02T01:28:53,040   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,041   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-02T01:28:53,042   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T01:28:53,042   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
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2023-10-02T01:28:53,045   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
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2023-10-02T01:28:53,046   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
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2023-10-02T01:28:53,048   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-02T01:28:53,048   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-02T01:28:53,150   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-02T01:28:53,151   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-02T01:28:53,152   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-02T01:28:53,153   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-02T01:28:53,154   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-02T01:28:53,155   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-02T01:28:53,156   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-02T01:28:53,157   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-02T01:28:53,158   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-02T01:28:53,159   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-02T01:28:53,160   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-02T01:28:53,160   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-02T01:28:53,161   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-02T01:28:53,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-02T01:28:53,163 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-02T01:28:53,164 Found index url https://www.piwheels.org/simple/
2023-10-02T01:28:53,332 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-02T01:28:53,448   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,449   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,449   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,450   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,450   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,451   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,452   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,453   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,453   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,454   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,455   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,456   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,456   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,456   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,457   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,457   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,458   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,458   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,459   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,459   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,460   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,461   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,461   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,462   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,462   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,463   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,464   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,464   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,476   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,476   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,477   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,477   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,478   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,479   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,479   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,480   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,480   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,481   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,481   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,482   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,498   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,502   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,503   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,506   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,507   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,510   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,514   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,519   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,520   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,521   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,521   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,522   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T01:28:53,523   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,523   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T01:28:53,524 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-02T01:28:53,524 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-02T01:28:53,565 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-02T01:28:53,583 Collecting moleculekit==1.7.15
2023-10-02T01:28:53,586   Created temporary directory: /tmp/pip-unpack-zhi2jgb_
2023-10-02T01:28:54,750   Downloading moleculekit-1.7.15.tar.gz (6.2 MB)
2023-10-02T01:28:57,791   Added moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz to build tracker '/tmp/pip-build-tracker-a67nwn0s'
2023-10-02T01:28:57,799   Created temporary directory: /tmp/pip-build-env-3h5jo0f6
2023-10-02T01:28:57,804   Installing build dependencies: started
2023-10-02T01:28:57,805   Running command pip subprocess to install build dependencies
2023-10-02T01:28:58,972   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-02T01:28:59,481   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T01:29:01,046   Collecting setuptools
2023-10-02T01:29:01,109     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-02T01:29:01,855     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T01:29:01,863     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T01:29:01,870     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T01:29:01,877     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T01:29:01,884     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T01:29:02,267   Collecting numpy>=1.18.5
2023-10-02T01:29:03,670     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-10-02T01:29:05,763   Collecting Cython>=0.29.21
2023-10-02T01:29:06,594     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-10-02T01:29:06,984   Collecting toml
2023-10-02T01:29:06,999     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-02T01:29:07,168   Collecting versioneer[toml]==0.28
2023-10-02T01:29:07,180     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-02T01:29:07,198        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 4.2 MB/s eta 0:00:00
2023-10-02T01:29:09,837   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-10-02T01:29:09,867     Creating /tmp/pip-build-env-3h5jo0f6/overlay/local/bin
2023-10-02T01:29:09,869     changing mode of /tmp/pip-build-env-3h5jo0f6/overlay/local/bin/versioneer to 755
2023-10-02T01:29:19,919     changing mode of /tmp/pip-build-env-3h5jo0f6/overlay/local/bin/f2py to 755
2023-10-02T01:29:23,742     changing mode of /tmp/pip-build-env-3h5jo0f6/overlay/local/bin/cygdb to 755
2023-10-02T01:29:23,744     changing mode of /tmp/pip-build-env-3h5jo0f6/overlay/local/bin/cython to 755
2023-10-02T01:29:23,746     changing mode of /tmp/pip-build-env-3h5jo0f6/overlay/local/bin/cythonize to 755
2023-10-02T01:29:23,791   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 versioneer-0.28
2023-10-02T01:29:24,502   Installing build dependencies: finished with status 'done'
2023-10-02T01:29:24,505   Getting requirements to build wheel: started
2023-10-02T01:29:24,506   Running command Getting requirements to build wheel
2023-10-02T01:29:59,769   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,770   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,770   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,771   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,772   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,773   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,774   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,774   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,775   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,776   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-10-02T01:29:59,776   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T01:29:59,777   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2023-10-02T01:29:59,778   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
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2023-10-02T01:30:00,043   running egg_info
2023-10-02T01:30:00,049   writing moleculekit.egg-info/PKG-INFO
2023-10-02T01:30:00,052   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T01:30:00,054   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T01:30:00,055   writing top-level names to moleculekit.egg-info/top_level.txt
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2023-10-02T01:30:00,077   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,077   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,078   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,078   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,079   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,080   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,080   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,081   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,081   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,082   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,083   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,083   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,084   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,084   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,085   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,085   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,085   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,086   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,086   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T01:30:00,087   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,088   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T01:30:00,089   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T01:30:00,093   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,094   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,094   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,094   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,095   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,095   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,096   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,096   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,097   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,097   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,098   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,098   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,099   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,099   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,100   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,100   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,101   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,101   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,101   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,102   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,102   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,103   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,103   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,103   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:00,104   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:00,127   reading manifest template 'MANIFEST.in'
2023-10-02T01:30:00,343   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T01:30:00,344   no previously-included directories found matching 'moleculekit/tests'
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2023-10-02T01:30:00,346   adding license file 'LICENSE'
2023-10-02T01:30:00,359   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:01,558   Getting requirements to build wheel: finished with status 'done'
2023-10-02T01:30:01,571   Installing backend dependencies: started
2023-10-02T01:30:01,573   Running command pip subprocess to install backend dependencies
2023-10-02T01:30:02,791   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-02T01:30:03,349   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T01:30:03,846   Collecting wheel
2023-10-02T01:30:03,863     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-02T01:30:06,071   Installing collected packages: wheel
2023-10-02T01:30:06,292     Creating /tmp/pip-build-env-3h5jo0f6/normal/local/bin
2023-10-02T01:30:06,294     changing mode of /tmp/pip-build-env-3h5jo0f6/normal/local/bin/wheel to 755
2023-10-02T01:30:06,306   Successfully installed wheel-0.41.2
2023-10-02T01:30:06,802   Installing backend dependencies: finished with status 'done'
2023-10-02T01:30:06,804   Created temporary directory: /tmp/pip-modern-metadata-g_ru6dxa
2023-10-02T01:30:06,806   Preparing metadata (pyproject.toml): started
2023-10-02T01:30:06,808   Running command Preparing metadata (pyproject.toml)
2023-10-02T01:30:09,059   running dist_info
2023-10-02T01:30:09,061   creating /tmp/pip-modern-metadata-g_ru6dxa/moleculekit.egg-info
2023-10-02T01:30:09,066   writing /tmp/pip-modern-metadata-g_ru6dxa/moleculekit.egg-info/PKG-INFO
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2023-10-02T01:30:09,097   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,097   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,098   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,098   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,099   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,099   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,100   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,100   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,101   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,101   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,102   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,103   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,103   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,104   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,104   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,105   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,105   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,106   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,106   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,107   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,107   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,108   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,108   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,109   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,109   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,110   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,110   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,111   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,111   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,112   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,112   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,113   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,114   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,114   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,114   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,115   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,115   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,116   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,116   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,117   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,117   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,117   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,118   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,118   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,119   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,119   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,119   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,120   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,120   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,121   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,121   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,122   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,122   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,123   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:09,123   reading manifest file '/tmp/pip-modern-metadata-g_ru6dxa/moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:09,124   reading manifest template 'MANIFEST.in'
2023-10-02T01:30:09,336   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T01:30:09,336   no previously-included directories found matching 'moleculekit/tests'
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2023-10-02T01:30:09,338   adding license file 'LICENSE'
2023-10-02T01:30:09,348   writing manifest file '/tmp/pip-modern-metadata-g_ru6dxa/moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:09,355   creating '/tmp/pip-modern-metadata-g_ru6dxa/moleculekit-1.7.15.dist-info'
2023-10-02T01:30:09,604   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-02T01:30:09,609   Source in /tmp/pip-wheel-8olfk64z/moleculekit_5645ba9ad2a84fb682831b4345eb03ca has version 1.7.15, which satisfies requirement moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz
2023-10-02T01:30:09,610   Removed moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz from build tracker '/tmp/pip-build-tracker-a67nwn0s'
2023-10-02T01:30:09,615 Created temporary directory: /tmp/pip-unpack-zm7ut6mv
2023-10-02T01:30:09,616 Created temporary directory: /tmp/pip-unpack-a6q13u3_
2023-10-02T01:30:09,624 Building wheels for collected packages: moleculekit
2023-10-02T01:30:09,628   Created temporary directory: /tmp/pip-wheel-14yle1qa
2023-10-02T01:30:09,628   Destination directory: /tmp/pip-wheel-14yle1qa
2023-10-02T01:30:09,630   Building wheel for moleculekit (pyproject.toml): started
2023-10-02T01:30:09,632   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-02T01:30:11,759   running bdist_wheel
2023-10-02T01:30:11,773   running build
2023-10-02T01:30:11,774   running build_py
2023-10-02T01:30:11,780   creating build
2023-10-02T01:30:11,781   creating build/lib.linux-armv7l-cpython-311
2023-10-02T01:30:11,782   creating build/lib.linux-armv7l-cpython-311/moleculekit
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2023-10-02T01:30:11,815   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,816   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,818   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,820   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,822   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,824   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:11,827   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,828   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,830   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,833   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,835   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,837   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,839   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,842   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,844   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,847   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,849   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,850   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,852   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,855   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T01:30:11,857   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T01:30:11,858   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T01:30:11,862   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T01:30:11,863   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T01:30:11,866   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,867   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,869   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,871   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,873   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,875   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,878   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T01:30:11,881   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T01:30:11,882   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T01:30:11,884   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T01:30:11,885   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T01:30:11,887   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T01:30:11,890   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,890   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,893   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,895   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,897   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,899   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,901   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,903   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,905   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,907   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,909   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,911   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,913   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,916   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,918   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,920   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T01:30:11,922   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T01:30:11,923   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T01:30:11,925   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T01:30:11,927   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T01:30:11,929   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T01:30:11,931   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T01:30:11,932   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T01:30:11,934   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T01:30:11,936   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T01:30:11,937   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T01:30:11,939   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T01:30:11,942   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T01:30:11,944   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T01:30:11,948   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T01:30:11,949   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T01:30:11,951   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T01:30:11,953   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T01:30:11,954   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T01:30:11,957   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T01:30:11,958   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T01:30:11,960   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T01:30:11,962   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T01:30:11,964   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T01:30:11,967   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T01:30:11,967   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T01:30:11,970   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T01:30:11,971   running egg_info
2023-10-02T01:30:11,976   writing moleculekit.egg-info/PKG-INFO
2023-10-02T01:30:11,978   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T01:30:11,980   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T01:30:11,981   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-02T01:30:11,992   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,993   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,993   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,994   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,995   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,995   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,996   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,996   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,997   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,997   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,998   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,999   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:11,999   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,000   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,000   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,000   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,001   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,002   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,002   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,003   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,003   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,004   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,005   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,005   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,006   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,006   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,007   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,007   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,008   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,009   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,009   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,010   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,010   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,011   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,011   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,012   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,012   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,013   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,013   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,014   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,014   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,015   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,015   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,016   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,016   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,017   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,018   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,018   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,019   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,019   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,020   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,020   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,020   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,021   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,021   dependency /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T01:30:12,022   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:12,022   reading manifest template 'MANIFEST.in'
2023-10-02T01:30:12,213   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T01:30:12,214   no previously-included directories found matching 'moleculekit/tests'
2023-10-02T01:30:12,215   no previously-included directories found matching 'package'
2023-10-02T01:30:12,216   adding license file 'LICENSE'
2023-10-02T01:30:12,230   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T01:30:12,238   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-02T01:30:12,238   !!

2023-10-02T01:30:12,240           ********************************************************************************
2023-10-02T01:30:12,240           ############################
2023-10-02T01:30:12,241           # Package would be ignored #
2023-10-02T01:30:12,241           ############################
2023-10-02T01:30:12,242           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-02T01:30:12,242           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,244           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,244           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-02T01:30:12,245           to the `packages` configuration field.

2023-10-02T01:30:12,246           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,246           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,247           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,248           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,250           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,250           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-02T01:30:12,251           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-02T01:30:12,251           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,252           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,252           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,253           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,254           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,255           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,255                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,256                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,256                 directory, all directories are treated like packages.
2023-10-02T01:30:12,256           ********************************************************************************

2023-10-02T01:30:12,257   !!
2023-10-02T01:30:12,258     check.warn(importable)
2023-10-02T01:30:12,258   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-02T01:30:12,259   !!

2023-10-02T01:30:12,260           ********************************************************************************
2023-10-02T01:30:12,260           ############################
2023-10-02T01:30:12,261           # Package would be ignored #
2023-10-02T01:30:12,262           ############################
2023-10-02T01:30:12,263           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-02T01:30:12,263           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,264           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,265           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-02T01:30:12,265           to the `packages` configuration field.

2023-10-02T01:30:12,266           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,267           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,268           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,269           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,270           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,271           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-02T01:30:12,271           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-02T01:30:12,272           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,272           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,273           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,274           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,275           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,276           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,277                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,277                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,278                 directory, all directories are treated like packages.
2023-10-02T01:30:12,278           ********************************************************************************

2023-10-02T01:30:12,280   !!
2023-10-02T01:30:12,280     check.warn(importable)
2023-10-02T01:30:12,280   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-02T01:30:12,281   !!

2023-10-02T01:30:12,282           ********************************************************************************
2023-10-02T01:30:12,282           ############################
2023-10-02T01:30:12,283           # Package would be ignored #
2023-10-02T01:30:12,283           ############################
2023-10-02T01:30:12,283           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-02T01:30:12,284           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,285           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,285           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-02T01:30:12,286           to the `packages` configuration field.

2023-10-02T01:30:12,287           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,287           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,288           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,289           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,292           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,296           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-02T01:30:12,299           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-02T01:30:12,303           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,304           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,305           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,306           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,308           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,309           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,310                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,311                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,311                 directory, all directories are treated like packages.
2023-10-02T01:30:12,312           ********************************************************************************

2023-10-02T01:30:12,319   !!
2023-10-02T01:30:12,322     check.warn(importable)
2023-10-02T01:30:12,329   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-02T01:30:12,331   !!

2023-10-02T01:30:12,332           ********************************************************************************
2023-10-02T01:30:12,333           ############################
2023-10-02T01:30:12,334           # Package would be ignored #
2023-10-02T01:30:12,334           ############################
2023-10-02T01:30:12,335           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-02T01:30:12,335           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,336           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,337           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-02T01:30:12,338           to the `packages` configuration field.

2023-10-02T01:30:12,339           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,340           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,340           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,341           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,342           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,343           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-02T01:30:12,344           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-02T01:30:12,348           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,352           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,357           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,359           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,360           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,362           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,362                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,363                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,363                 directory, all directories are treated like packages.
2023-10-02T01:30:12,364           ********************************************************************************

2023-10-02T01:30:12,365   !!
2023-10-02T01:30:12,366     check.warn(importable)
2023-10-02T01:30:12,366   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-02T01:30:12,367   !!

2023-10-02T01:30:12,368           ********************************************************************************
2023-10-02T01:30:12,369           ############################
2023-10-02T01:30:12,370           # Package would be ignored #
2023-10-02T01:30:12,370           ############################
2023-10-02T01:30:12,374           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-02T01:30:12,381           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,383           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,383           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-02T01:30:12,384           to the `packages` configuration field.

2023-10-02T01:30:12,385           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,385           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,386           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,387           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,388           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,389           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-02T01:30:12,389           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-02T01:30:12,390           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,390           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,391           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,392           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,393           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,394           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,395                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,395                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,396                 directory, all directories are treated like packages.
2023-10-02T01:30:12,396           ********************************************************************************

2023-10-02T01:30:12,397   !!
2023-10-02T01:30:12,397     check.warn(importable)
2023-10-02T01:30:12,398   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-02T01:30:12,398   !!

2023-10-02T01:30:12,399           ********************************************************************************
2023-10-02T01:30:12,400           ############################
2023-10-02T01:30:12,400           # Package would be ignored #
2023-10-02T01:30:12,400           ############################
2023-10-02T01:30:12,401           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-02T01:30:12,401           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,402           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,403           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-02T01:30:12,404           to the `packages` configuration field.

2023-10-02T01:30:12,405           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,405           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,406           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,407           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,408           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,410           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-02T01:30:12,410           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-02T01:30:12,411           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,411           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,412           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,413           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,414           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,416           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,417                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,417                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,418                 directory, all directories are treated like packages.
2023-10-02T01:30:12,418           ********************************************************************************

2023-10-02T01:30:12,419   !!
2023-10-02T01:30:12,420     check.warn(importable)
2023-10-02T01:30:12,421   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-02T01:30:12,421   !!

2023-10-02T01:30:12,423           ********************************************************************************
2023-10-02T01:30:12,426           ############################
2023-10-02T01:30:12,427           # Package would be ignored #
2023-10-02T01:30:12,428           ############################
2023-10-02T01:30:12,428           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-02T01:30:12,428           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,429           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,430           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-02T01:30:12,430           to the `packages` configuration field.

2023-10-02T01:30:12,431           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,431           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,432           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,433           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,434           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,434           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-02T01:30:12,435           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-02T01:30:12,435           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,436           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,436           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,437           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,438           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,440           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,441                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,442                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,442                 directory, all directories are treated like packages.
2023-10-02T01:30:12,443           ********************************************************************************

2023-10-02T01:30:12,444   !!
2023-10-02T01:30:12,445     check.warn(importable)
2023-10-02T01:30:12,446   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-02T01:30:12,446   !!

2023-10-02T01:30:12,448           ********************************************************************************
2023-10-02T01:30:12,448           ############################
2023-10-02T01:30:12,449           # Package would be ignored #
2023-10-02T01:30:12,449           ############################
2023-10-02T01:30:12,450           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-02T01:30:12,450           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,451           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,452           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-02T01:30:12,452           to the `packages` configuration field.

2023-10-02T01:30:12,454           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,454           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,455           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,456           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,457           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,459           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-02T01:30:12,472           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-02T01:30:12,513           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,531           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,563           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,598           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,599           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,600           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,601                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,601                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,601                 directory, all directories are treated like packages.
2023-10-02T01:30:12,602           ********************************************************************************

2023-10-02T01:30:12,603   !!
2023-10-02T01:30:12,603     check.warn(importable)
2023-10-02T01:30:12,603   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-02T01:30:12,604   !!

2023-10-02T01:30:12,605           ********************************************************************************
2023-10-02T01:30:12,605           ############################
2023-10-02T01:30:12,606           # Package would be ignored #
2023-10-02T01:30:12,606           ############################
2023-10-02T01:30:12,607           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-02T01:30:12,607           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,608           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,609           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-02T01:30:12,609           to the `packages` configuration field.

2023-10-02T01:30:12,610           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,611           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,611           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,612           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,613           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,614           If you don't want 'moleculekit.share' to be distributed and are
2023-10-02T01:30:12,614           already explicitly excluding 'moleculekit.share' via
2023-10-02T01:30:12,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,615           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,616           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,617           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,618           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,619           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,620                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,620                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,621                 directory, all directories are treated like packages.
2023-10-02T01:30:12,621           ********************************************************************************

2023-10-02T01:30:12,622   !!
2023-10-02T01:30:12,623     check.warn(importable)
2023-10-02T01:30:12,623   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-02T01:30:12,624   !!

2023-10-02T01:30:12,625           ********************************************************************************
2023-10-02T01:30:12,625           ############################
2023-10-02T01:30:12,626           # Package would be ignored #
2023-10-02T01:30:12,626           ############################
2023-10-02T01:30:12,627           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-02T01:30:12,627           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,628           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,629           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-02T01:30:12,629           to the `packages` configuration field.

2023-10-02T01:30:12,630           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,631           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,631           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,632           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,633           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,634           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-02T01:30:12,635           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-02T01:30:12,635           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,636           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,636           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,637           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,638           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,639           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,640                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,640                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,641                 directory, all directories are treated like packages.
2023-10-02T01:30:12,642           ********************************************************************************

2023-10-02T01:30:12,643   !!
2023-10-02T01:30:12,644     check.warn(importable)
2023-10-02T01:30:12,644   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-02T01:30:12,645   !!

2023-10-02T01:30:12,646           ********************************************************************************
2023-10-02T01:30:12,647           ############################
2023-10-02T01:30:12,647           # Package would be ignored #
2023-10-02T01:30:12,648           ############################
2023-10-02T01:30:12,648           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-02T01:30:12,649           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,651           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,652           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-02T01:30:12,652           to the `packages` configuration field.

2023-10-02T01:30:12,654           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,655           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,656           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,657           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,658           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,659           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-02T01:30:12,659           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-02T01:30:12,660           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,660           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,661           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,662           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,662           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,664           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,665                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,666                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,667                 directory, all directories are treated like packages.
2023-10-02T01:30:12,668           ********************************************************************************

2023-10-02T01:30:12,669   !!
2023-10-02T01:30:12,670     check.warn(importable)
2023-10-02T01:30:12,670   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-02T01:30:12,671   !!

2023-10-02T01:30:12,672           ********************************************************************************
2023-10-02T01:30:12,672           ############################
2023-10-02T01:30:12,673           # Package would be ignored #
2023-10-02T01:30:12,674           ############################
2023-10-02T01:30:12,674           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-02T01:30:12,675           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,677           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,677           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-02T01:30:12,679           to the `packages` configuration field.

2023-10-02T01:30:12,680           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,680           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,682           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,683           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,684           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,685           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-02T01:30:12,686           already explicitly excluding 'moleculekit.tmalign' via
2023-10-02T01:30:12,686           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,688           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,688           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,690           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,691           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,694           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,695                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,695                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,696                 directory, all directories are treated like packages.
2023-10-02T01:30:12,696           ********************************************************************************

2023-10-02T01:30:12,697   !!
2023-10-02T01:30:12,697     check.warn(importable)
2023-10-02T01:30:12,698   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-02T01:30:12,698   !!

2023-10-02T01:30:12,700           ********************************************************************************
2023-10-02T01:30:12,701           ############################
2023-10-02T01:30:12,701           # Package would be ignored #
2023-10-02T01:30:12,702           ############################
2023-10-02T01:30:12,702           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-02T01:30:12,703           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,703           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,704           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-02T01:30:12,704           to the `packages` configuration field.

2023-10-02T01:30:12,705           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,706           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,706           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,707           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,708           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,709           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-02T01:30:12,709           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-02T01:30:12,710           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,710           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,711           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,712           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,713           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,715                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,715                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,716                 directory, all directories are treated like packages.
2023-10-02T01:30:12,716           ********************************************************************************

2023-10-02T01:30:12,717   !!
2023-10-02T01:30:12,718     check.warn(importable)
2023-10-02T01:30:12,719   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-02T01:30:12,719   !!

2023-10-02T01:30:12,720           ********************************************************************************
2023-10-02T01:30:12,721           ############################
2023-10-02T01:30:12,721           # Package would be ignored #
2023-10-02T01:30:12,722           ############################
2023-10-02T01:30:12,722           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-02T01:30:12,723           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,724           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,724           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-02T01:30:12,725           to the `packages` configuration field.

2023-10-02T01:30:12,726           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,726           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,727           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,728           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,729           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,730           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-02T01:30:12,730           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-02T01:30:12,731           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,731           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,732           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,732           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,733           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,735           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,735                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,736                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,736                 directory, all directories are treated like packages.
2023-10-02T01:30:12,737           ********************************************************************************

2023-10-02T01:30:12,737   !!
2023-10-02T01:30:12,738     check.warn(importable)
2023-10-02T01:30:12,738   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-02T01:30:12,739   !!

2023-10-02T01:30:12,740           ********************************************************************************
2023-10-02T01:30:12,740           ############################
2023-10-02T01:30:12,741           # Package would be ignored #
2023-10-02T01:30:12,741           ############################
2023-10-02T01:30:12,742           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-02T01:30:12,742           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,743           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,744           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-02T01:30:12,744           to the `packages` configuration field.

2023-10-02T01:30:12,745           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,746           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,746           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,747           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,748           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,749           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-02T01:30:12,749           already explicitly excluding 'moleculekit.wrapping' via
2023-10-02T01:30:12,750           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,750           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,751           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,752           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,753           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,754           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,754                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,755                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,755                 directory, all directories are treated like packages.
2023-10-02T01:30:12,756           ********************************************************************************

2023-10-02T01:30:12,756   !!
2023-10-02T01:30:12,757     check.warn(importable)
2023-10-02T01:30:12,757   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-02T01:30:12,757   !!

2023-10-02T01:30:12,758           ********************************************************************************
2023-10-02T01:30:12,759           ############################
2023-10-02T01:30:12,759           # Package would be ignored #
2023-10-02T01:30:12,760           ############################
2023-10-02T01:30:12,760           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-02T01:30:12,760           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,761           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,762           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-02T01:30:12,762           to the `packages` configuration field.

2023-10-02T01:30:12,763           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,764           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,764           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,765           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,767           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-02T01:30:12,767           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-02T01:30:12,768           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,768           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,769           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,770           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,773           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,773                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,774                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,774                 directory, all directories are treated like packages.
2023-10-02T01:30:12,775           ********************************************************************************

2023-10-02T01:30:12,776   !!
2023-10-02T01:30:12,776     check.warn(importable)
2023-10-02T01:30:12,777   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-02T01:30:12,777   !!

2023-10-02T01:30:12,778           ********************************************************************************
2023-10-02T01:30:12,779           ############################
2023-10-02T01:30:12,779           # Package would be ignored #
2023-10-02T01:30:12,779           ############################
2023-10-02T01:30:12,780           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-02T01:30:12,780           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,781           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,782           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-02T01:30:12,782           to the `packages` configuration field.

2023-10-02T01:30:12,783           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,784           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,784           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,785           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,786           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,786           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-02T01:30:12,787           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-02T01:30:12,787           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,788           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,788           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,789           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,790           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,791           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,792                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,792                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,793                 directory, all directories are treated like packages.
2023-10-02T01:30:12,793           ********************************************************************************

2023-10-02T01:30:12,794   !!
2023-10-02T01:30:12,795     check.warn(importable)
2023-10-02T01:30:12,795   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-02T01:30:12,796   !!

2023-10-02T01:30:12,797           ********************************************************************************
2023-10-02T01:30:12,797           ############################
2023-10-02T01:30:12,798           # Package would be ignored #
2023-10-02T01:30:12,798           ############################
2023-10-02T01:30:12,799           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-02T01:30:12,799           but it is absent from setuptools' `packages` configuration.

2023-10-02T01:30:12,800           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T01:30:12,801           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-02T01:30:12,801           to the `packages` configuration field.

2023-10-02T01:30:12,802           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T01:30:12,803           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T01:30:12,803           instead of `find_packages(...)`/`find:`).

2023-10-02T01:30:12,805           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T01:30:12,805           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T01:30:12,806           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-02T01:30:12,807           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-02T01:30:12,807           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T01:30:12,808           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T01:30:12,808           combination with a more fine grained `package-data` configuration.

2023-10-02T01:30:12,809           You can read more about "package data files" on setuptools documentation page:

2023-10-02T01:30:12,810           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T01:30:12,811           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T01:30:12,812                 even if it does not contain any `.py` files.
2023-10-02T01:30:12,812                 On the other hand, currently there is no concept of package data
2023-10-02T01:30:12,813                 directory, all directories are treated like packages.
2023-10-02T01:30:12,813           ********************************************************************************

2023-10-02T01:30:12,814   !!
2023-10-02T01:30:12,815     check.warn(importable)
2023-10-02T01:30:12,815   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:12,816   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:12,816   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T01:30:12,816   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T01:30:12,817   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T01:30:12,817   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T01:30:12,818   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T01:30:12,818   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T01:30:12,819   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T01:30:12,819   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T01:30:12,820   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T01:30:12,820   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T01:30:12,821   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T01:30:12,821   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T01:30:12,822   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T01:30:12,822   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T01:30:12,823   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T01:30:12,824   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T01:30:12,824   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T01:30:12,825   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T01:30:12,825   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-10-02T01:30:12,826   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,826   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,827   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,827   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,827   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,828   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,828   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,829   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,829   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,830   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,830   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,831   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,831   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,831   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,832   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,832   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,833   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,833   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,834   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,834   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,835   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,835   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,836   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,836   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,837   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,837   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,838   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,838   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,839   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,839   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,839   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,840   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,840   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,841   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,841   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,841   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,842   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,842   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,843   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,843   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,844   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,844   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,845   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,845   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,846   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,846   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,847   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,847   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,848   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,848   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,849   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,849   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,850   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,850   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,851   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,851   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,852   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,852   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,853   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,853   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,854   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,854   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,855   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,855   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,856   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,856   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,856   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,857   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,857   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,858   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,858   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,859   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,859   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,860   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,860   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,861   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,861   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,862   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,862   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,863   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,864   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,864   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,865   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,865   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,866   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,866   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,867   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,867   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,868   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,868   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,869   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,869   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,870   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,870   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,871   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,871   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,872   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,872   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,872   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,873   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,873   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,874   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,874   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,875   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,875   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,876   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,876   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,877   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,877   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,878   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,879   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,879   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,881   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,883   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,885   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,886   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,889   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,891   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,893   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,894   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,896   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,898   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,900   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,902   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,904   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,906   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,908   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,909   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,912   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,914   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,916   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,918   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,920   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,922   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,924   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,926   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,928   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,930   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,932   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,934   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,936   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,938   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,940   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,942   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,944   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,945   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,947   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,949   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,951   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,953   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,955   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,957   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,959   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,961   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,963   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,964   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,967   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,969   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,971   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,973   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,975   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,977   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,979   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,981   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,983   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,985   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,987   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,989   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,991   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,992   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,994   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,996   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:12,998   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:13,000   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:13,002   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:13,003   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T01:30:13,005   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T01:30:13,006   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T01:30:13,027   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T01:30:13,029   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T01:30:13,031   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T01:30:13,032   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T01:30:13,034   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T01:30:13,035   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T01:30:13,040   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T01:30:13,041   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T01:30:13,060   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T01:30:13,062   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T01:30:13,063   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T01:30:13,088   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T01:30:13,090   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T01:30:13,092   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T01:30:13,093   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T01:30:13,095   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T01:30:13,097   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T01:30:13,099   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T01:30:13,100   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T01:30:13,103   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T01:30:13,105   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T01:30:13,108   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T01:30:13,108   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T01:30:13,127   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T01:30:13,130   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T01:30:13,131   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T01:30:13,154   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T01:30:13,156   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T01:30:13,157   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T01:30:13,176   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T01:30:13,178   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T01:30:13,179   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T01:30:13,206   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T01:30:13,217   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T01:30:13,217   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.15'
2023-10-02T01:30:13,218   running build_ext
2023-10-02T01:30:13,227   building 'moleculekit.interactions.hbonds' extension
2023-10-02T01:30:13,227   creating build/temp.linux-armv7l-cpython-311
2023-10-02T01:30:13,228   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-10-02T01:30:13,228   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T01:30:13,229   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T01:30:13,230   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-02T01:30:13,562   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:30:13,563                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:30:13,564                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:30:13,564                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-02T01:30:13,565   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:30:13,565      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:30:13,566         |  ^~~~~~~
2023-10-02T01:30:43,944   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:30:44,227   building 'moleculekit.interactions.pipi' extension
2023-10-02T01:30:44,228   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T01:30:44,228   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-10-02T01:30:44,531   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:30:44,532                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:30:44,532                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:30:44,533                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-02T01:30:44,533   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:30:44,534      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:30:44,534         |  ^~~~~~~
2023-10-02T01:31:17,214   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:31:17,506   building 'moleculekit.interactions.cationpi' extension
2023-10-02T01:31:17,507   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T01:31:17,508   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-02T01:31:17,844   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:31:17,845                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:31:17,846                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:31:17,846                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-02T01:31:17,847   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:31:17,847      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:31:17,848         |  ^~~~~~~
2023-10-02T01:31:50,267   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:31:50,571   building 'moleculekit.interactions.sigmahole' extension
2023-10-02T01:31:50,572   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T01:31:50,573   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-02T01:31:50,898   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:31:50,898                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:31:50,899                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:31:50,899                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-02T01:31:50,900   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:31:50,900      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:31:50,900         |  ^~~~~~~
2023-10-02T01:32:22,789   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:32:23,069   building 'moleculekit.wrapping' extension
2023-10-02T01:32:23,069   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T01:32:23,070   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-10-02T01:32:23,376   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:32:23,377                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:32:23,377                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:32:23,378                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-02T01:32:23,378   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:32:23,379      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:32:23,379         |  ^~~~~~~
2023-10-02T01:32:51,539   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:32:51,729   building 'moleculekit.bondguesser_utils' extension
2023-10-02T01:32:51,729   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T01:32:51,730   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-02T01:32:52,034   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:32:52,035                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:32:52,035                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:32:52,036                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-02T01:32:52,036   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:32:52,037      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:32:52,037         |  ^~~~~~~
2023-10-02T01:32:54,363   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-02T01:32:54,363   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T01:32:54,364   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-02T01:32:54,365         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T01:32:54,365   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T01:32:54,366   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-02T01:32:54,367         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T01:32:54,368   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T01:32:54,368   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-02T01:32:54,369         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T01:32:54,370   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,370   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,371         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,372   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,372   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T01:32:54,373         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,374   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,375   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,375         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,375   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,376   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,376         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,377   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,377   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T01:32:54,378         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,378   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,379   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,379         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,380   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,380   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,381         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,381   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,382   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T01:32:54,383         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,383   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,384   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,385         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,386   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,386   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,387         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,388   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,388   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,389         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,389   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,390   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,391         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,392   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,393         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,394   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T01:32:54,394         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,395   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,396         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,397   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T01:32:54,397         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,398   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,399         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,399   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,400   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T01:32:54,401         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,401   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,402   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,403         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,403   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T01:32:54,404   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T01:32:54,405         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-02T01:32:54,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T01:32:54,429   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-02T01:32:54,429         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-02T01:32:54,430   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T01:32:54,431   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-02T01:32:54,432         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T01:33:20,843   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:33:21,121   building 'moleculekit.atomselect_utils' extension
2023-10-02T01:33:21,121   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T01:33:21,122   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-02T01:33:21,424   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:33:21,424                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:33:21,425                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:33:21,425                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-02T01:33:21,425   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:33:21,426      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:33:21,426         |  ^~~~~~~
2023-10-02T01:33:23,945   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-02T01:33:23,945   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T01:33:23,946   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-02T01:33:23,947         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T01:33:23,954   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T01:33:23,954   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T01:33:23,955   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T01:33:23,956         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T01:33:23,963   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T01:33:23,963   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T01:33:23,964   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T01:33:23,964         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T01:33:58,485   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:33:58,775   building 'moleculekit.distance_utils' extension
2023-10-02T01:33:58,775   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T01:33:58,776   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-10-02T01:33:59,079   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:33:59,080                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:33:59,080                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:33:59,081                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-02T01:33:59,081   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:33:59,082      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:33:59,083         |  ^~~~~~~
2023-10-02T01:34:35,871   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:34:36,154   building 'moleculekit.occupancy_utils' extension
2023-10-02T01:34:36,155   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T01:34:36,156   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-02T01:34:36,456   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:34:36,457                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:34:36,458                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:34:36,458                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-02T01:34:36,459   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:34:36,459      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:34:36,459         |  ^~~~~~~
2023-10-02T01:35:03,784   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:35:03,972   building 'moleculekit.xtc' extension
2023-10-02T01:35:03,973   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T01:35:03,973   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T01:35:03,974   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-10-02T01:35:04,644   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,645      66 |         "OK",
2023-10-02T01:35:04,645         |         ^~~~
2023-10-02T01:35:04,646   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,647      67 |         "Header",
2023-10-02T01:35:04,647         |         ^~~~~~~~
2023-10-02T01:35:04,648   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,649      68 |         "String",
2023-10-02T01:35:04,649         |         ^~~~~~~~
2023-10-02T01:35:04,650   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,651      69 |         "Double",
2023-10-02T01:35:04,651         |         ^~~~~~~~
2023-10-02T01:35:04,652   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,652      70 |         "Integer",
2023-10-02T01:35:04,653         |         ^~~~~~~~~
2023-10-02T01:35:04,654   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,654      71 |         "Float",
2023-10-02T01:35:04,655         |         ^~~~~~~
2023-10-02T01:35:04,655   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,656      72 |         "Unsigned integer",
2023-10-02T01:35:04,657         |         ^~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,658   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,658      73 |         "Compressed 3D coordinate",
2023-10-02T01:35:04,659         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,660   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,661      74 |         "Closing file",
2023-10-02T01:35:04,661         |         ^~~~~~~~~~~~~~
2023-10-02T01:35:04,662   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,662      75 |         "Magic number",
2023-10-02T01:35:04,663         |         ^~~~~~~~~~~~~~
2023-10-02T01:35:04,663   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,663      76 |         "Not enough memory",
2023-10-02T01:35:04,664         |         ^~~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,664   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,665      77 |         "End of file",
2023-10-02T01:35:04,665         |         ^~~~~~~~~~~~~
2023-10-02T01:35:04,666   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T01:35:04,667      78 |         "File not found"
2023-10-02T01:35:04,667         |         ^~~~~~~~~~~~~~~~
2023-10-02T01:35:04,673   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-02T01:35:04,674   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,674     459 |     while (size >= num && num_of_bits < 32)
2023-10-02T01:35:04,675         |            ~~~~~^~~~~~
2023-10-02T01:35:04,676   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-02T01:35:04,677   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,677     505 |     while (bytes[num_of_bytes] >= num)
2023-10-02T01:35:04,678         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-02T01:35:04,681   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-02T01:35:04,682   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,682     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-02T01:35:04,683         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,684   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,685     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-10-02T01:35:04,685         |                             ~~^~~~~~~~~~~~~~
2023-10-02T01:35:04,686   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,687     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-10-02T01:35:04,687         |                             ~~^~~~~~~~~~~~~~~~
2023-10-02T01:35:04,688   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-02T01:35:04,688   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,689     664 |                 if (lastbits < num_of_bits)
2023-10-02T01:35:04,690         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-10-02T01:35:04,693   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-02T01:35:04,694   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,695     785 |         if(size3>xfp->buf1size)
2023-10-02T01:35:04,696         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T01:35:04,698   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,699     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T01:35:04,699         |                          ^
2023-10-02T01:35:04,703   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,703     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,704         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,704   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,705     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,705         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,706   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,706     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,707         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,708   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,708     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,709         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,710   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,710     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,711         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,712   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,712     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T01:35:04,713         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T01:35:04,714   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,714     756 |         int smallidx,  minidx, maxidx;
2023-10-02T01:35:04,715         |                        ^~~~~~
2023-10-02T01:35:04,716   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,716     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T01:35:04,717         |                                ^~~~~~
2023-10-02T01:35:04,717   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T01:35:04,718     763 |         int errval=1;
2023-10-02T01:35:04,719         |             ^~~~~~
2023-10-02T01:35:04,720   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-02T01:35:04,720   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,721    1011 |         if(size3>xfp->buf1size)
2023-10-02T01:35:04,722         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T01:35:04,723   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,723    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T01:35:04,724         |                                 ~~~~~~~~^~~~~~~
2023-10-02T01:35:04,724   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,725    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T01:35:04,725         |                           ~~~~~~~~^~~~~~~
2023-10-02T01:35:04,726   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,726    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T01:35:04,727         |                           ~~~~~~~~^~~~~~~
2023-10-02T01:35:04,727   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,728    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-02T01:35:04,728         |                         ^
2023-10-02T01:35:04,729   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,730    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T01:35:04,730         |                          ^
2023-10-02T01:35:04,733   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,734    1275 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T01:35:04,734         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,735   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,736    1001 |         int errval;
2023-10-02T01:35:04,736         |             ^~~~~~
2023-10-02T01:35:04,737   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-02T01:35:04,738   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,738    1316 |         if(size3>xfp->buf1size)
2023-10-02T01:35:04,739         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T01:35:04,740   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,741    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T01:35:04,741         |                          ^
2023-10-02T01:35:04,744   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,745    1289 |         int smallidx,  maxidx, minidx;
2023-10-02T01:35:04,745         |                                ^~~~~~
2023-10-02T01:35:04,746   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,747    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T01:35:04,747         |                                ^~~~~~
2023-10-02T01:35:04,748   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T01:35:04,749    1297 |         int errval=1;
2023-10-02T01:35:04,750         |             ^~~~~~
2023-10-02T01:35:04,750   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-02T01:35:04,751   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,751    1513 |         if(size3>xfp->buf1size) {
2023-10-02T01:35:04,752         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T01:35:04,754   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,754    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-02T01:35:04,755         |                         ^
2023-10-02T01:35:04,755   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T01:35:04,756    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T01:35:04,756         |                          ^
2023-10-02T01:35:04,760   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T01:35:04,760    1743 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T01:35:04,761         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T01:35:04,762   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T01:35:04,762    1504 |         int errval=1;
2023-10-02T01:35:04,763         |             ^~~~~~
2023-10-02T01:35:07,607   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-02T01:35:07,877   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-10-02T01:35:08,668   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-02T01:35:08,668   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T01:35:08,669     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-02T01:35:08,670         |             ^~~
2023-10-02T01:35:08,678   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-02T01:35:08,679   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T01:35:08,680     418 |         int nf3 = nframes * 3;
2023-10-02T01:35:08,680         |             ^~~
2023-10-02T01:35:08,687   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-02T01:35:08,687   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-02T01:35:08,688     491 |         int reading_index = 0;
2023-10-02T01:35:08,689         |             ^~~~~~~~~~~~~
2023-10-02T01:35:08,690   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-02T01:35:08,690     492 |         int writing_index = 0;
2023-10-02T01:35:08,690         |             ^~~~~~~~~~~~~
2023-10-02T01:35:09,570   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-10-02T01:35:09,876   In file included from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T01:35:09,876                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T01:35:09,877                    from /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T01:35:09,877                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-02T01:35:09,878   /tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T01:35:09,878      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T01:35:09,879         |  ^~~~~~~
2023-10-02T01:35:33,850   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:35:34,134   building 'moleculekit.tmalign' extension
2023-10-02T01:35:34,135   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T01:35:34,135   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T01:35:34,137   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-10-02T01:36:08,055   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3h5jo0f6/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-10-02T01:36:30,686   In file included from /usr/include/c++/12/vector:70,
2023-10-02T01:36:30,686                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-02T01:36:30,687   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-02T01:36:30,688   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-02T01:36:30,688     439 |       vector<_Tp, _Alloc>::
2023-10-02T01:36:30,689         |       ^~~~~~~~~~~~~~~~~~~
2023-10-02T01:36:31,503   In file included from /usr/include/c++/12/vector:64:
2023-10-02T01:36:31,503   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T01:36:31,504       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20812:32,
2023-10-02T01:36:31,504       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T01:36:31,504   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T01:36:31,505    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T01:36:31,505         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T01:36:31,506   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T01:36:31,506       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20826:33,
2023-10-02T01:36:31,507       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T01:36:31,507   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T01:36:31,508    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T01:36:31,509         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T01:36:31,510   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T01:36:31,511       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20911:34,
2023-10-02T01:36:31,511       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T01:36:31,512   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T01:36:31,513    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T01:36:31,514         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T01:36:33,867   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-10-02T01:36:34,260   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T01:36:34,261   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.15'
2023-10-02T01:36:34,262   installing to build/bdist.linux-armv7l/wheel
2023-10-02T01:36:34,263   running install
2023-10-02T01:36:34,286   running install_lib
2023-10-02T01:36:34,292   creating build/bdist.linux-armv7l
2023-10-02T01:36:34,293   creating build/bdist.linux-armv7l/wheel
2023-10-02T01:36:34,295   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,301   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,342   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T01:36:34,343   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T01:36:34,345   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T01:36:34,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,400   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,405   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,415   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T01:36:34,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T01:36:34,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T01:36:34,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T01:36:34,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,438   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,440   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T01:36:34,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T01:36:34,446   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T01:36:34,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T01:36:34,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:34,457   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T01:36:34,458   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T01:36:34,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T01:36:34,479   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T01:36:34,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T01:36:34,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T01:36:34,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T01:36:34,704   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-02T01:36:34,709   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,725   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,737   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,754   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,760   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,762   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,764   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,774   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,783   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,785   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,799   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,801   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,805   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,811   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,818   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,822   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,824   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,826   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,828   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,833   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,835   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,837   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,839   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,848   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,850   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,852   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,854   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,859   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,868   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,870   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,872   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,874   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,881   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,883   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,885   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,887   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,889   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,909   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,913   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T01:36:34,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,920   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,944   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,948   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,951   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,953   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,955   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,956   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,958   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,961   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,964   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,970   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,976   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,983   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,997   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:34,999   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,002   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,003   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,005   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,007   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,009   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,014   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,021   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,023   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,025   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,037   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,039   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,043   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,050   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,052   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T01:36:35,056   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T01:36:35,057   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T01:36:35,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,060   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,063   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,064   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T01:36:35,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T01:36:35,068   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T01:36:35,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T01:36:35,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T01:36:35,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,077   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,079   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T01:36:35,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,092   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T01:36:35,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T01:36:35,096   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T01:36:35,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,126   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,156   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T01:36:35,158   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T01:36:35,159   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T01:36:35,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T01:36:35,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T01:36:35,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T01:36:35,170   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T01:36:35,172   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T01:36:35,175   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T01:36:35,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T01:36:35,181   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T01:36:35,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T01:36:35,186   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T01:36:35,188   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T01:36:35,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T01:36:35,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,228   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,230   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T01:36:35,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T01:36:35,261   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T01:36:35,264   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,286   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,310   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T01:36:35,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T01:36:35,331   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T01:36:35,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,335   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T01:36:35,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T01:36:35,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T01:36:35,358   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T01:36:35,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T01:36:35,379   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T01:36:35,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T01:36:35,425   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T01:36:35,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T01:36:35,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T01:36:35,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,457   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,460   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T01:36:35,462   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T01:36:35,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T01:36:35,465   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T01:36:35,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T01:36:35,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T01:36:35,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T01:36:35,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T01:36:35,504   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T01:36:35,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T01:36:35,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T01:36:35,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T01:36:35,515   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,521   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,544   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T01:36:35,546   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T01:36:35,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T01:36:35,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T01:36:35,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T01:36:35,554   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T01:36:35,555   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T01:36:35,560   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T01:36:35,583   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T01:36:35,636   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,651   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,657   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,659   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,662   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,665   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,673   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,676   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T01:36:35,679   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T01:36:35,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T01:36:35,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T01:36:35,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T01:36:35,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T01:36:35,691   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T01:36:35,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T01:36:35,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T01:36:35,716   running install_egg_info
2023-10-02T01:36:35,723   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.15-py3.11.egg-info
2023-10-02T01:36:35,737   running install_scripts
2023-10-02T01:36:35,788   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.15.dist-info/WHEEL
2023-10-02T01:36:35,791   creating '/tmp/pip-wheel-14yle1qa/.tmp-3a8nphkr/moleculekit-1.7.15-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-02T01:36:35,794   adding 'moleculekit/__init__.py'
2023-10-02T01:36:35,796   adding 'moleculekit/_version.py'
2023-10-02T01:36:35,798   adding 'moleculekit/align.py'
2023-10-02T01:36:36,126   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:36,141   adding 'moleculekit/bondguesser.py'
2023-10-02T01:36:36,388   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:36,399   adding 'moleculekit/config.py'
2023-10-02T01:36:36,401   adding 'moleculekit/dihedral.py'
2023-10-02T01:36:36,402   adding 'moleculekit/distance.py'
2023-10-02T01:36:36,703   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:36,717   adding 'moleculekit/home.py'
2023-10-02T01:36:36,718   adding 'moleculekit/logging.ini'
2023-10-02T01:36:36,732   adding 'moleculekit/molecule.py'
2023-10-02T01:36:36,962   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:36,973   adding 'moleculekit/opm.py'
2023-10-02T01:36:36,976   adding 'moleculekit/periodictable.py'
2023-10-02T01:36:36,978   adding 'moleculekit/pymolgraphics.py'
2023-10-02T01:36:36,981   adding 'moleculekit/rcsb.py'
2023-10-02T01:36:36,983   adding 'moleculekit/rdkitintegration.py'
2023-10-02T01:36:36,996   adding 'moleculekit/readers.py'
2023-10-02T01:36:37,597   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:37,624   adding 'moleculekit/util.py'
2023-10-02T01:36:37,626   adding 'moleculekit/version.py'
2023-10-02T01:36:37,627   adding 'moleculekit/viewer.py'
2023-10-02T01:36:37,629   adding 'moleculekit/vmd_wrapper'
2023-10-02T01:36:37,631   adding 'moleculekit/vmdgraphics.py'
2023-10-02T01:36:37,633   adding 'moleculekit/vmdviewer.py'
2023-10-02T01:36:37,871   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:37,886   adding 'moleculekit/writers.py'
2023-10-02T01:36:38,148   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:38,159   adding 'moleculekit/atomselect/__init__.py'
2023-10-02T01:36:38,161   adding 'moleculekit/atomselect/analyze.py'
2023-10-02T01:36:38,163   adding 'moleculekit/atomselect/atomselect.py'
2023-10-02T01:36:38,166   adding 'moleculekit/atomselect/languageparser.py'
2023-10-02T01:36:38,270   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-02T01:36:38,284   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-02T01:36:38,375   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-02T01:36:38,387   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-02T01:36:38,485   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-02T01:36:38,497   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-02T01:36:38,500   adding 'moleculekit/interactions/__init__.py'
2023-10-02T01:36:38,794   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:39,064   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:39,077   adding 'moleculekit/interactions/interactions.py'
2023-10-02T01:36:39,377   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:39,665   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T01:36:39,767   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-02T01:36:39,778   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-02T01:36:39,869   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-02T01:36:39,880   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-02T01:36:39,971   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-02T01:36:39,982   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-02T01:36:40,073   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-02T01:36:40,084   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-02T01:36:40,170   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-02T01:36:40,181   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-02T01:36:40,182   adding 'moleculekit/pdbx/__init__.py'
2023-10-02T01:36:40,186   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-02T01:36:40,188   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-02T01:36:40,191   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-02T01:36:40,192   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-02T01:36:40,194   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-02T01:36:40,195   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-02T01:36:40,197   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-02T01:36:40,198   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-02T01:36:40,200   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-02T01:36:40,202   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-02T01:36:40,203   adding 'moleculekit/ply/__init__.py'
2023-10-02T01:36:40,208   adding 'moleculekit/ply/lex.py'
2023-10-02T01:36:40,221   adding 'moleculekit/ply/yacc.py'
2023-10-02T01:36:40,223   adding 'moleculekit/projections/__init__.py'
2023-10-02T01:36:40,225   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-02T01:36:40,229   adding 'moleculekit/projections/metricdihedral.py'
2023-10-02T01:36:40,233   adding 'moleculekit/projections/metricdistance.py'
2023-10-02T01:36:40,235   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-02T01:36:40,237   adding 'moleculekit/projections/metricgyration.py'
2023-10-02T01:36:40,241   adding 'moleculekit/projections/metricplumed2.py'
2023-10-02T01:36:40,243   adding 'moleculekit/projections/metricrmsd.py'
2023-10-02T01:36:40,245   adding 'moleculekit/projections/metricsasa.py'
2023-10-02T01:36:40,247   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-02T01:36:40,248   adding 'moleculekit/projections/metricshell.py'
2023-10-02T01:36:40,250   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-02T01:36:40,251   adding 'moleculekit/projections/metrictmscore.py'
2023-10-02T01:36:40,253   adding 'moleculekit/projections/projection.py'
2023-10-02T01:36:40,254   adding 'moleculekit/projections/util.py'
2023-10-02T01:36:40,256   adding 'moleculekit/share/ALA.cif'
2023-10-02T01:36:40,257   adding 'moleculekit/share/backbone.cif'
2023-10-02T01:36:41,560   adding 'moleculekit/share/opm_sequences.json'
2023-10-02T01:36:41,672   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-02T01:36:41,676   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-02T01:36:41,677   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-02T01:36:41,678   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-02T01:36:41,679   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-02T01:36:41,680   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-02T01:36:41,682   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-02T01:36:41,683   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-02T01:36:41,684   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-02T01:36:41,685   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-02T01:36:41,687   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-02T01:36:41,688   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-02T01:36:41,689   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-02T01:36:41,691   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-02T01:36:41,692   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-02T01:36:41,693   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-02T01:36:41,695   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-02T01:36:41,696   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-02T01:36:41,697   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-02T01:36:41,698   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-02T01:36:41,699   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-02T01:36:41,701   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-02T01:36:41,702   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-02T01:36:41,703   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-02T01:36:41,704   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-02T01:36:41,706   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-02T01:36:41,707   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-02T01:36:41,708   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-02T01:36:41,709   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-02T01:36:41,711   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-02T01:36:41,712   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-02T01:36:41,713   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-02T01:36:41,714   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-02T01:36:41,716   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-02T01:36:41,717   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-02T01:36:41,718   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-02T01:36:41,719   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-02T01:36:41,720   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-02T01:36:41,722   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-02T01:36:41,723   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-02T01:36:41,724   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-02T01:36:41,726   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-02T01:36:41,727   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-02T01:36:41,728   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-02T01:36:41,729   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-02T01:36:41,731   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-02T01:36:41,732   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-02T01:36:41,733   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-02T01:36:41,734   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-02T01:36:41,736   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-02T01:36:41,737   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-02T01:36:41,738   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-02T01:36:41,739   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-02T01:36:41,741   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-02T01:36:41,742   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-02T01:36:41,743   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-02T01:36:41,744   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-02T01:36:41,745   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-02T01:36:41,746   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-02T01:36:41,747   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-02T01:36:41,748   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-02T01:36:41,749   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-02T01:36:41,751   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-02T01:36:41,752   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-02T01:36:41,753   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-02T01:36:41,754   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-02T01:36:41,755   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-02T01:36:41,757   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-02T01:36:41,758   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-02T01:36:41,759   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-02T01:36:41,760   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-02T01:36:41,761   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-02T01:36:41,762   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-02T01:36:41,764   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-02T01:36:41,765   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-02T01:36:41,766   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-02T01:36:41,767   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-02T01:36:41,768   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-02T01:36:41,769   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-02T01:36:41,771   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-02T01:36:41,772   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-02T01:36:41,773   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-02T01:36:41,774   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-02T01:36:41,776   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-02T01:36:41,777   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-02T01:36:41,778   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-02T01:36:41,779   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-02T01:36:41,781   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-02T01:36:41,782   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-02T01:36:41,783   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-02T01:36:41,784   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-02T01:36:41,786   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-02T01:36:41,787   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-02T01:36:41,788   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-02T01:36:41,789   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-02T01:36:41,790   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-02T01:36:41,791   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-02T01:36:41,793   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-02T01:36:41,793   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-02T01:36:41,795   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-02T01:36:41,796   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-02T01:36:41,797   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-02T01:36:41,798   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-02T01:36:41,799   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-02T01:36:41,800   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-02T01:36:41,802   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-02T01:36:41,803   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-02T01:36:41,804   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-02T01:36:41,805   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-02T01:36:41,807   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-02T01:36:41,808   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-02T01:36:41,809   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-02T01:36:41,810   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-02T01:36:41,811   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-02T01:36:41,812   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-02T01:36:41,814   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-02T01:36:41,815   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-02T01:36:41,816   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-02T01:36:41,817   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-02T01:36:41,818   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-02T01:36:41,819   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-02T01:36:41,821   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-02T01:36:41,822   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-02T01:36:41,823   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-02T01:36:41,824   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-02T01:36:41,825   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-02T01:36:41,826   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-02T01:36:41,828   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-02T01:36:41,829   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-02T01:36:41,830   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-02T01:36:41,832   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-02T01:36:41,833   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-02T01:36:41,834   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-02T01:36:41,835   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-02T01:36:41,836   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-02T01:36:41,838   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-02T01:36:41,839   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-02T01:36:41,840   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-02T01:36:41,841   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-02T01:36:41,842   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-02T01:36:41,844   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-02T01:36:41,845   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-02T01:36:41,846   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-02T01:36:41,847   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-02T01:36:41,848   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-02T01:36:41,850   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-02T01:36:41,851   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-02T01:36:41,852   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-02T01:36:41,853   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-02T01:36:41,854   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-02T01:36:41,855   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-02T01:36:41,856   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-02T01:36:41,857   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-02T01:36:41,858   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-02T01:36:41,859   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-02T01:36:41,861   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-02T01:36:41,862   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-02T01:36:41,863   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-02T01:36:41,864   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-02T01:36:41,865   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-02T01:36:41,867   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-02T01:36:41,868   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-02T01:36:41,869   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-02T01:36:41,870   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-02T01:36:41,871   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-02T01:36:41,872   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-02T01:36:41,873   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-02T01:36:41,875   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-02T01:36:41,876   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-02T01:36:41,877   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-02T01:36:41,878   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-02T01:36:41,879   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-02T01:36:41,880   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-02T01:36:41,882   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-02T01:36:41,883   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-02T01:36:41,884   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-02T01:36:41,886   adding 'moleculekit/smallmol/__init__.py'
2023-10-02T01:36:41,891   adding 'moleculekit/smallmol/smallmol.py'
2023-10-02T01:36:41,894   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-02T01:36:41,895   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-02T01:36:41,897   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-02T01:36:41,899   adding 'moleculekit/smallmol/util.py'
2023-10-02T01:36:41,900   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-02T01:36:41,902   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-02T01:36:41,904   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-02T01:36:41,905   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-02T01:36:41,995   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-02T01:36:42,005   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-02T01:36:42,007   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-02T01:36:42,008   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-02T01:36:42,026   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-02T01:36:42,029   adding 'moleculekit/tools/__init__.py'
2023-10-02T01:36:42,031   adding 'moleculekit/tools/atomtyper.py'
2023-10-02T01:36:42,034   adding 'moleculekit/tools/autosegment.py'
2023-10-02T01:36:42,036   adding 'moleculekit/tools/crystalpacking.py'
2023-10-02T01:36:42,038   adding 'moleculekit/tools/detect.py'
2023-10-02T01:36:42,040   adding 'moleculekit/tools/docking.py'
2023-10-02T01:36:42,042   adding 'moleculekit/tools/graphalignment.py'
2023-10-02T01:36:42,044   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-02T01:36:42,045   adding 'moleculekit/tools/moleculechecks.py'
2023-10-02T01:36:42,051   adding 'moleculekit/tools/preparation.py'
2023-10-02T01:36:42,054   adding 'moleculekit/tools/preparation_customres.py'
2023-10-02T01:36:42,056   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-02T01:36:42,058   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-02T01:36:42,060   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-02T01:36:42,061   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-02T01:36:42,149   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-02T01:36:42,159   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-02T01:36:42,248   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-02T01:36:42,259   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-02T01:36:42,260   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-02T01:36:42,263   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-02T01:36:42,264   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-02T01:36:42,265   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-02T01:36:42,272   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-02T01:36:42,274   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-02T01:36:42,276   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-02T01:36:42,278   adding 'moleculekit-1.7.15.dist-info/LICENSE'
2023-10-02T01:36:42,280   adding 'moleculekit-1.7.15.dist-info/METADATA'
2023-10-02T01:36:42,281   adding 'moleculekit-1.7.15.dist-info/WHEEL'
2023-10-02T01:36:42,281   adding 'moleculekit-1.7.15.dist-info/top_level.txt'
2023-10-02T01:36:42,286   adding 'moleculekit-1.7.15.dist-info/RECORD'
2023-10-02T01:36:42,420   removing build/bdist.linux-armv7l/wheel
2023-10-02T01:36:42,709   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-02T01:36:43,020   Created wheel for moleculekit: filename=moleculekit-1.7.15-cp311-cp311-linux_armv7l.whl size=12838187 sha256=446954ba7e40d3a4d7c296092ab38bc6852be61736eb4a42f00e75931b271e39
2023-10-02T01:36:43,022   Stored in directory: /tmp/pip-ephem-wheel-cache-0gfb25xf/wheels/fd/4a/d5/102a8d0d659710f3db4028158a4d6f8c5f8713624c4ee8c060
2023-10-02T01:36:43,045 Successfully built moleculekit
2023-10-02T01:36:43,338 Removed build tracker: '/tmp/pip-build-tracker-a67nwn0s'