2023-10-02T07:16:20,307 Created temporary directory: /tmp/pip-build-tracker-lz1_pufy
2023-10-02T07:16:20,308 Initialized build tracking at /tmp/pip-build-tracker-lz1_pufy
2023-10-02T07:16:20,308 Created build tracker: /tmp/pip-build-tracker-lz1_pufy
2023-10-02T07:16:20,309 Entered build tracker: /tmp/pip-build-tracker-lz1_pufy
2023-10-02T07:16:20,310 Created temporary directory: /tmp/pip-wheel-u2qio7hc
2023-10-02T07:16:20,313 Created temporary directory: /tmp/pip-ephem-wheel-cache-vfnn6dqp
2023-10-02T07:16:20,335 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T07:16:20,338 2 location(s) to search for versions of moleculekit:
2023-10-02T07:16:20,338 * https://pypi.org/simple/moleculekit/
2023-10-02T07:16:20,338 * https://www.piwheels.org/simple/moleculekit/
2023-10-02T07:16:20,339 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-02T07:16:20,340 Getting page https://pypi.org/simple/moleculekit/
2023-10-02T07:16:20,342 Found index url https://pypi.org/simple/
2023-10-02T07:16:20,499 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-02T07:16:20,536   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,537   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-02T07:16:20,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,538   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-02T07:16:20,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,540   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-02T07:16:20,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,541   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-02T07:16:20,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,542   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-02T07:16:20,543   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,544   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-02T07:16:20,544   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,545   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-02T07:16:20,546   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,546   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-02T07:16:20,547   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,547   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-02T07:16:20,548   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,549   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-02T07:16:20,549   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,550   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-02T07:16:20,551   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,551   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-02T07:16:20,552   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,553   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-02T07:16:20,553   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,554   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-02T07:16:20,555   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,555   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-02T07:16:20,556   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,557   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-02T07:16:20,557   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,558   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-02T07:16:20,558   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,559   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-02T07:16:20,560   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,560   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-02T07:16:20,561   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,561   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-02T07:16:20,562   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,563   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-02T07:16:20,564   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,564   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-02T07:16:20,565   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,565   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-02T07:16:20,566   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,567   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-02T07:16:20,568   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,568   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-02T07:16:20,569   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,569   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-02T07:16:20,570   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,570   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-02T07:16:20,571   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,572   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-02T07:16:20,573   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,573   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-02T07:16:20,574   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,575   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-02T07:16:20,575   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,576   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-02T07:16:20,577   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,578   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-02T07:16:20,578   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T07:16:20,579   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-10-02T07:16:20,686   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-02T07:16:20,687   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-02T07:16:20,688   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-02T07:16:20,689   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-02T07:16:20,690   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-02T07:16:20,691   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-02T07:16:20,692   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-02T07:16:20,693   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-02T07:16:20,694   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-02T07:16:20,695   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-02T07:16:20,696   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-02T07:16:20,697   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-02T07:16:20,698   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-02T07:16:20,699   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-02T07:16:20,699   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-02T07:16:20,700 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-02T07:16:20,701 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-02T07:16:20,702 Found index url https://www.piwheels.org/simple/
2023-10-02T07:16:20,885 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-02T07:16:20,954   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.7.7-cp39-cp39-linux_armv7l.whl#sha256=a91a34606e0519960ade59e824acf3ed04563b9d1e093314a657f5e5670f254f (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-10-02T07:16:21,001   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T07:16:21,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T07:16:21,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T07:16:21,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,064   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,064   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,065   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T07:16:21,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T07:16:21,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T07:16:21,080 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-02T07:16:21,080 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-02T07:16:21,123 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-02T07:16:21,143 Collecting moleculekit==1.7.16
2023-10-02T07:16:21,145   Created temporary directory: /tmp/pip-unpack-4c93rsef
2023-10-02T07:16:21,364   Downloading moleculekit-1.7.16.tar.gz (6.2 MB)
2023-10-02T07:16:24,008   Added moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz to build tracker '/tmp/pip-build-tracker-lz1_pufy'
2023-10-02T07:16:24,017   Created temporary directory: /tmp/pip-build-env-3kfp5xfx
2023-10-02T07:16:24,021   Installing build dependencies: started
2023-10-02T07:16:24,023   Running command pip subprocess to install build dependencies
2023-10-02T07:16:25,161   Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-10-02T07:16:25,675   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T07:16:27,232   Collecting setuptools
2023-10-02T07:16:27,300     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-02T07:16:28,096     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T07:16:28,104     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T07:16:28,110     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T07:16:28,117     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T07:16:28,124     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T07:16:28,733   Collecting numpy>=1.18.5
2023-10-02T07:16:30,090     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-10-02T07:16:32,190   Collecting Cython>=0.29.21
2023-10-02T07:16:33,016     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-10-02T07:16:33,415   Collecting toml
2023-10-02T07:16:33,438     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-02T07:16:33,533   Collecting versioneer[toml]==0.28
2023-10-02T07:16:33,557     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-02T07:16:36,367   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-10-02T07:16:36,398     Creating /tmp/pip-build-env-3kfp5xfx/overlay/local/bin
2023-10-02T07:16:36,400     changing mode of /tmp/pip-build-env-3kfp5xfx/overlay/local/bin/versioneer to 755
2023-10-02T07:16:47,289     changing mode of /tmp/pip-build-env-3kfp5xfx/overlay/local/bin/f2py to 755
2023-10-02T07:16:50,867     changing mode of /tmp/pip-build-env-3kfp5xfx/overlay/local/bin/cygdb to 755
2023-10-02T07:16:50,870     changing mode of /tmp/pip-build-env-3kfp5xfx/overlay/local/bin/cython to 755
2023-10-02T07:16:50,872     changing mode of /tmp/pip-build-env-3kfp5xfx/overlay/local/bin/cythonize to 755
2023-10-02T07:16:50,918   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 versioneer-0.28
2023-10-02T07:16:51,557   Installing build dependencies: finished with status 'done'
2023-10-02T07:16:51,561   Getting requirements to build wheel: started
2023-10-02T07:16:51,563   Running command Getting requirements to build wheel
2023-10-02T07:17:27,360   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,361   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,362   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,362   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,363   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,363   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,364   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,365   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,365   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,365   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-10-02T07:17:27,366   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T07:17:27,366   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-02T07:17:27,367   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-02T07:17:27,367   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-02T07:17:27,368   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
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2023-10-02T07:17:27,369   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
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2023-10-02T07:17:27,910   running egg_info
2023-10-02T07:17:27,916   writing moleculekit.egg-info/PKG-INFO
2023-10-02T07:17:27,919   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T07:17:27,921   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T07:17:27,922   writing top-level names to moleculekit.egg-info/top_level.txt
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2023-10-02T07:17:27,945   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,946   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,946   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,947   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,948   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,948   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,949   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,950   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,950   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,951   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,951   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,951   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,952   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,952   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,953   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,953   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,954   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,954   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,955   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,955   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,956   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,956   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,958   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,959   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,959   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,960   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,961   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,961   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,962   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,962   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,963   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,963   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,963   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,965   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,965   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,966   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,966   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,967   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,967   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,968   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,969   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,970   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,970   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,970   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:27,971   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:27,972   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
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2023-10-02T07:17:28,492   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T07:17:28,493   no previously-included directories found matching 'moleculekit/tests'
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2023-10-02T07:17:28,495   adding license file 'LICENSE'
2023-10-02T07:17:28,508   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T07:17:29,718   Getting requirements to build wheel: finished with status 'done'
2023-10-02T07:17:29,732   Installing backend dependencies: started
2023-10-02T07:17:29,733   Running command pip subprocess to install backend dependencies
2023-10-02T07:17:30,971   Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-10-02T07:17:31,527   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T07:17:32,041   Collecting wheel
2023-10-02T07:17:32,060     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-02T07:17:34,411   Installing collected packages: wheel
2023-10-02T07:17:34,639     Creating /tmp/pip-build-env-3kfp5xfx/normal/local/bin
2023-10-02T07:17:34,641     changing mode of /tmp/pip-build-env-3kfp5xfx/normal/local/bin/wheel to 755
2023-10-02T07:17:34,653   Successfully installed wheel-0.41.2
2023-10-02T07:17:35,108   Installing backend dependencies: finished with status 'done'
2023-10-02T07:17:35,110   Created temporary directory: /tmp/pip-modern-metadata-wu12sppt
2023-10-02T07:17:35,112   Preparing metadata (pyproject.toml): started
2023-10-02T07:17:35,113   Running command Preparing metadata (pyproject.toml)
2023-10-02T07:17:37,401   running dist_info
2023-10-02T07:17:37,402   creating /tmp/pip-modern-metadata-wu12sppt/moleculekit.egg-info
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2023-10-02T07:17:37,440   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,441   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,441   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,442   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,442   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:37,443   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:37,444   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,445   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,445   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,446   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,446   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,447   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,448   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,448   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,448   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:37,450   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,450   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,451   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,452   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,452   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,453   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,453   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,454   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,454   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:37,455   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T07:17:37,457   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,457   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,458   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,458   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,458   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,459   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,459   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,460   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,460   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,460   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,461   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,461   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,462   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,462   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,462   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,463   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,463   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,464   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,464   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,465   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,465   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,466   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:37,466   reading manifest file '/tmp/pip-modern-metadata-wu12sppt/moleculekit.egg-info/SOURCES.txt'
2023-10-02T07:17:37,466   reading manifest template 'MANIFEST.in'
2023-10-02T07:17:37,696   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T07:17:37,697   no previously-included directories found matching 'moleculekit/tests'
2023-10-02T07:17:37,698   no previously-included directories found matching 'package'
2023-10-02T07:17:37,698   adding license file 'LICENSE'
2023-10-02T07:17:37,709   writing manifest file '/tmp/pip-modern-metadata-wu12sppt/moleculekit.egg-info/SOURCES.txt'
2023-10-02T07:17:37,717   creating '/tmp/pip-modern-metadata-wu12sppt/moleculekit-1.7.16.dist-info'
2023-10-02T07:17:37,947   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-02T07:17:37,952   Source in /tmp/pip-wheel-u2qio7hc/moleculekit_c91e49bde0984e8db7793d4cba7e2642 has version 1.7.16, which satisfies requirement moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz
2023-10-02T07:17:37,953   Removed moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz from build tracker '/tmp/pip-build-tracker-lz1_pufy'
2023-10-02T07:17:37,958 Created temporary directory: /tmp/pip-unpack-r3y77j9y
2023-10-02T07:17:37,959 Created temporary directory: /tmp/pip-unpack-n_96_xmr
2023-10-02T07:17:37,967 Building wheels for collected packages: moleculekit
2023-10-02T07:17:37,972   Created temporary directory: /tmp/pip-wheel-5nahy03e
2023-10-02T07:17:37,972   Destination directory: /tmp/pip-wheel-5nahy03e
2023-10-02T07:17:37,974   Building wheel for moleculekit (pyproject.toml): started
2023-10-02T07:17:37,976   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-02T07:17:40,106   running bdist_wheel
2023-10-02T07:17:40,121   running build
2023-10-02T07:17:40,121   running build_py
2023-10-02T07:17:40,128   creating build
2023-10-02T07:17:40,128   creating build/lib.linux-armv7l-cpython-311
2023-10-02T07:17:40,129   creating build/lib.linux-armv7l-cpython-311/moleculekit
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2023-10-02T07:17:40,155   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,158   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,159   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,161   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,163   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,165   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,166   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,168   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,170   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,172   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:40,175   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T07:17:40,176   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T07:17:40,178   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T07:17:40,181   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T07:17:40,185   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T07:17:40,186   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T07:17:40,187   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T07:17:40,190   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T07:17:40,192   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T07:17:40,195   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,196   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,197   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,200   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,202   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,204   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,206   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T07:17:40,209   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,210   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,212   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,214   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,217   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,219   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,221   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,224   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,225   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,227   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,230   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,232   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,234   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,236   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T07:17:40,239   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T07:17:40,240   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T07:17:40,241   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T07:17:40,244   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T07:17:40,245   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T07:17:40,247   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,248   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,250   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,253   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,255   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,257   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,259   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,261   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,263   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,265   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,267   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,269   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,271   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,274   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,276   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,278   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T07:17:40,281   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T07:17:40,282   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T07:17:40,284   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T07:17:40,286   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T07:17:40,288   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T07:17:40,290   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T07:17:40,291   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T07:17:40,293   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T07:17:40,295   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T07:17:40,296   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T07:17:40,298   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T07:17:40,300   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T07:17:40,302   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T07:17:40,305   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T07:17:40,306   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T07:17:40,307   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T07:17:40,309   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T07:17:40,311   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T07:17:40,314   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T07:17:40,314   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T07:17:40,316   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T07:17:40,318   running egg_info
2023-10-02T07:17:40,322   writing moleculekit.egg-info/PKG-INFO
2023-10-02T07:17:40,325   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T07:17:40,327   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T07:17:40,327   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-02T07:17:40,339   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,339   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,340   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,340   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,341   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,342   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,342   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,343   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,343   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,344   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,344   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,345   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,345   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,345   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,346   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,346   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,347   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,347   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,348   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,348   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,349   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,349   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,350   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,351   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,351   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,352   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,352   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,353   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,354   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,354   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,354   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,355   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,355   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,356   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,356   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,357   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,357   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,358   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,358   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,359   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,359   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,360   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,360   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,361   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,361   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,362   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,362   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,363   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,363   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,364   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,364   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,365   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,365   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,366   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,366   dependency /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T07:17:40,367   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T07:17:40,367   reading manifest template 'MANIFEST.in'
2023-10-02T07:17:40,586   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T07:17:40,587   no previously-included directories found matching 'moleculekit/tests'
2023-10-02T07:17:40,588   no previously-included directories found matching 'package'
2023-10-02T07:17:40,589   adding license file 'LICENSE'
2023-10-02T07:17:40,603   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T07:17:40,611   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-02T07:17:40,612   !!

2023-10-02T07:17:40,613           ********************************************************************************
2023-10-02T07:17:40,614           ############################
2023-10-02T07:17:40,614           # Package would be ignored #
2023-10-02T07:17:40,615           ############################
2023-10-02T07:17:40,616           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-02T07:17:40,616           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,617           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,618           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-02T07:17:40,618           to the `packages` configuration field.

2023-10-02T07:17:40,620           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,620           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,620           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,621           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,622           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,623           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-02T07:17:40,623           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-02T07:17:40,624           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,625           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,625           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,626           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,627           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,628                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,628                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,629                 directory, all directories are treated like packages.
2023-10-02T07:17:40,629           ********************************************************************************

2023-10-02T07:17:40,630   !!
2023-10-02T07:17:40,630     check.warn(importable)
2023-10-02T07:17:40,631   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-02T07:17:40,632   !!

2023-10-02T07:17:40,633           ********************************************************************************
2023-10-02T07:17:40,633           ############################
2023-10-02T07:17:40,634           # Package would be ignored #
2023-10-02T07:17:40,635           ############################
2023-10-02T07:17:40,635           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-02T07:17:40,636           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,637           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,637           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-02T07:17:40,638           to the `packages` configuration field.

2023-10-02T07:17:40,639           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,639           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,640           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,641           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,642           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,643           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-02T07:17:40,643           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-02T07:17:40,644           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,645           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,645           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,646           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,648           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,649           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,649                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,650                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,650                 directory, all directories are treated like packages.
2023-10-02T07:17:40,651           ********************************************************************************

2023-10-02T07:17:40,652   !!
2023-10-02T07:17:40,652     check.warn(importable)
2023-10-02T07:17:40,653   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-02T07:17:40,653   !!

2023-10-02T07:17:40,654           ********************************************************************************
2023-10-02T07:17:40,654           ############################
2023-10-02T07:17:40,655           # Package would be ignored #
2023-10-02T07:17:40,655           ############################
2023-10-02T07:17:40,656           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-02T07:17:40,656           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,657           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,658           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-02T07:17:40,659           to the `packages` configuration field.

2023-10-02T07:17:40,660           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,661           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,662           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,663           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,664           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,665           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-02T07:17:40,665           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-02T07:17:40,666           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,666           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,667           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,668           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,669           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,671           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,671                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,672                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,672                 directory, all directories are treated like packages.
2023-10-02T07:17:40,673           ********************************************************************************

2023-10-02T07:17:40,674   !!
2023-10-02T07:17:40,674     check.warn(importable)
2023-10-02T07:17:40,675   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-02T07:17:40,676   !!

2023-10-02T07:17:40,682           ********************************************************************************
2023-10-02T07:17:40,682           ############################
2023-10-02T07:17:40,683           # Package would be ignored #
2023-10-02T07:17:40,684           ############################
2023-10-02T07:17:40,684           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-02T07:17:40,685           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,686           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,686           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-02T07:17:40,687           to the `packages` configuration field.

2023-10-02T07:17:40,688           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,688           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,689           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,690           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,690           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,691           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-02T07:17:40,692           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-02T07:17:40,692           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,693           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,695           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,699           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,706           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,708           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,708                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,709                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,709                 directory, all directories are treated like packages.
2023-10-02T07:17:40,710           ********************************************************************************

2023-10-02T07:17:40,711   !!
2023-10-02T07:17:40,711     check.warn(importable)
2023-10-02T07:17:40,712   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-02T07:17:40,712   !!

2023-10-02T07:17:40,714           ********************************************************************************
2023-10-02T07:17:40,714           ############################
2023-10-02T07:17:40,715           # Package would be ignored #
2023-10-02T07:17:40,715           ############################
2023-10-02T07:17:40,716           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-02T07:17:40,716           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,717           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,718           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-02T07:17:40,726           to the `packages` configuration field.

2023-10-02T07:17:40,732           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,733           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,733           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,734           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,736           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,737           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-02T07:17:40,738           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-02T07:17:40,738           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,739           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,739           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,740           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,741           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,742           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,743                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,744                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,746                 directory, all directories are treated like packages.
2023-10-02T07:17:40,747           ********************************************************************************

2023-10-02T07:17:40,756   !!
2023-10-02T07:17:40,756     check.warn(importable)
2023-10-02T07:17:40,757   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-02T07:17:40,757   !!

2023-10-02T07:17:40,758           ********************************************************************************
2023-10-02T07:17:40,758           ############################
2023-10-02T07:17:40,759           # Package would be ignored #
2023-10-02T07:17:40,759           ############################
2023-10-02T07:17:40,760           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-02T07:17:40,760           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,761           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,762           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-02T07:17:40,762           to the `packages` configuration field.

2023-10-02T07:17:40,763           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,764           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,764           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,765           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,767           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-02T07:17:40,767           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-02T07:17:40,768           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,768           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,769           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,770           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,772           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,773                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,773                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,774                 directory, all directories are treated like packages.
2023-10-02T07:17:40,775           ********************************************************************************

2023-10-02T07:17:40,776   !!
2023-10-02T07:17:40,776     check.warn(importable)
2023-10-02T07:17:40,777   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-02T07:17:40,777   !!

2023-10-02T07:17:40,778           ********************************************************************************
2023-10-02T07:17:40,779           ############################
2023-10-02T07:17:40,779           # Package would be ignored #
2023-10-02T07:17:40,779           ############################
2023-10-02T07:17:40,780           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-02T07:17:40,780           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,781           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,781           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-02T07:17:40,782           to the `packages` configuration field.

2023-10-02T07:17:40,783           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,783           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,784           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,785           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,786           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,787           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-02T07:17:40,787           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-02T07:17:40,788           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,788           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,788           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,789           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,790           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,792           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,792                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,793                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,793                 directory, all directories are treated like packages.
2023-10-02T07:17:40,794           ********************************************************************************

2023-10-02T07:17:40,795   !!
2023-10-02T07:17:40,796     check.warn(importable)
2023-10-02T07:17:40,796   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-02T07:17:40,797   !!

2023-10-02T07:17:40,798           ********************************************************************************
2023-10-02T07:17:40,798           ############################
2023-10-02T07:17:40,799           # Package would be ignored #
2023-10-02T07:17:40,799           ############################
2023-10-02T07:17:40,800           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-02T07:17:40,800           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,801           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,802           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-02T07:17:40,803           to the `packages` configuration field.

2023-10-02T07:17:40,804           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,804           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,805           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,806           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,806           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,807           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-02T07:17:40,808           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-02T07:17:40,808           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,809           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,809           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,810           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,811           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,812           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,813                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,813                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,814                 directory, all directories are treated like packages.
2023-10-02T07:17:40,814           ********************************************************************************

2023-10-02T07:17:40,815   !!
2023-10-02T07:17:40,815     check.warn(importable)
2023-10-02T07:17:40,816   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-02T07:17:40,816   !!

2023-10-02T07:17:40,817           ********************************************************************************
2023-10-02T07:17:40,818           ############################
2023-10-02T07:17:40,818           # Package would be ignored #
2023-10-02T07:17:40,819           ############################
2023-10-02T07:17:40,819           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-02T07:17:40,820           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,821           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,822           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-02T07:17:40,822           to the `packages` configuration field.

2023-10-02T07:17:40,824           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,824           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,839           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,871           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,953           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,959           If you don't want 'moleculekit.share' to be distributed and are
2023-10-02T07:17:40,960           already explicitly excluding 'moleculekit.share' via
2023-10-02T07:17:40,960           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,961           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,961           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,963           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,964           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,966           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,966                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,966                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,967                 directory, all directories are treated like packages.
2023-10-02T07:17:40,967           ********************************************************************************

2023-10-02T07:17:40,968   !!
2023-10-02T07:17:40,968     check.warn(importable)
2023-10-02T07:17:40,969   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-02T07:17:40,969   !!

2023-10-02T07:17:40,970           ********************************************************************************
2023-10-02T07:17:40,970           ############################
2023-10-02T07:17:40,971           # Package would be ignored #
2023-10-02T07:17:40,971           ############################
2023-10-02T07:17:40,972           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-02T07:17:40,972           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,973           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,974           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-02T07:17:40,974           to the `packages` configuration field.

2023-10-02T07:17:40,975           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,976           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,976           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,977           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,978           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,979           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-02T07:17:40,979           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-02T07:17:40,980           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:40,980           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:40,981           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:40,982           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:40,983           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:40,984           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:40,985                 even if it does not contain any `.py` files.
2023-10-02T07:17:40,985                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:40,986                 directory, all directories are treated like packages.
2023-10-02T07:17:40,986           ********************************************************************************

2023-10-02T07:17:40,987   !!
2023-10-02T07:17:40,988     check.warn(importable)
2023-10-02T07:17:40,988   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-02T07:17:40,989   !!

2023-10-02T07:17:40,990           ********************************************************************************
2023-10-02T07:17:40,990           ############################
2023-10-02T07:17:40,991           # Package would be ignored #
2023-10-02T07:17:40,991           ############################
2023-10-02T07:17:40,992           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-02T07:17:40,993           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:40,994           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:40,994           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-02T07:17:40,994           to the `packages` configuration field.

2023-10-02T07:17:40,995           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:40,996           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:40,996           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:40,997           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:40,998           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:40,999           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-02T07:17:40,999           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-02T07:17:41,000           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,000           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,001           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,002           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,003           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,004           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,004                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,005                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,005                 directory, all directories are treated like packages.
2023-10-02T07:17:41,006           ********************************************************************************

2023-10-02T07:17:41,007   !!
2023-10-02T07:17:41,007     check.warn(importable)
2023-10-02T07:17:41,008   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-02T07:17:41,008   !!

2023-10-02T07:17:41,009           ********************************************************************************
2023-10-02T07:17:41,010           ############################
2023-10-02T07:17:41,010           # Package would be ignored #
2023-10-02T07:17:41,011           ############################
2023-10-02T07:17:41,011           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-02T07:17:41,011           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,013           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,013           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-02T07:17:41,014           to the `packages` configuration field.

2023-10-02T07:17:41,014           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,015           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,015           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,016           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,017           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,018           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-02T07:17:41,019           already explicitly excluding 'moleculekit.tmalign' via
2023-10-02T07:17:41,020           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,020           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,021           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,022           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,022           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,024           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,024                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,025                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,025                 directory, all directories are treated like packages.
2023-10-02T07:17:41,025           ********************************************************************************

2023-10-02T07:17:41,026   !!
2023-10-02T07:17:41,027     check.warn(importable)
2023-10-02T07:17:41,027   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-02T07:17:41,028   !!

2023-10-02T07:17:41,029           ********************************************************************************
2023-10-02T07:17:41,029           ############################
2023-10-02T07:17:41,029           # Package would be ignored #
2023-10-02T07:17:41,030           ############################
2023-10-02T07:17:41,030           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-02T07:17:41,031           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,032           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,032           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-02T07:17:41,033           to the `packages` configuration field.

2023-10-02T07:17:41,034           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,034           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,035           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,036           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,037           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,038           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-02T07:17:41,039           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-02T07:17:41,039           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,040           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,040           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,041           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,042           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,044           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,044                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,045                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,045                 directory, all directories are treated like packages.
2023-10-02T07:17:41,045           ********************************************************************************

2023-10-02T07:17:41,046   !!
2023-10-02T07:17:41,047     check.warn(importable)
2023-10-02T07:17:41,047   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-02T07:17:41,048   !!

2023-10-02T07:17:41,049           ********************************************************************************
2023-10-02T07:17:41,049           ############################
2023-10-02T07:17:41,050           # Package would be ignored #
2023-10-02T07:17:41,050           ############################
2023-10-02T07:17:41,051           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-02T07:17:41,051           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,052           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,052           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-02T07:17:41,053           to the `packages` configuration field.

2023-10-02T07:17:41,054           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,054           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,054           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,055           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,056           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,057           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-02T07:17:41,057           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-02T07:17:41,058           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,058           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,059           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,059           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,060           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,062           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,062                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,063                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,063                 directory, all directories are treated like packages.
2023-10-02T07:17:41,064           ********************************************************************************

2023-10-02T07:17:41,065   !!
2023-10-02T07:17:41,065     check.warn(importable)
2023-10-02T07:17:41,066   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-02T07:17:41,066   !!

2023-10-02T07:17:41,067           ********************************************************************************
2023-10-02T07:17:41,068           ############################
2023-10-02T07:17:41,068           # Package would be ignored #
2023-10-02T07:17:41,068           ############################
2023-10-02T07:17:41,069           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-02T07:17:41,070           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,071           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,071           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-02T07:17:41,072           to the `packages` configuration field.

2023-10-02T07:17:41,073           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,073           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,074           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,075           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,076           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,077           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-02T07:17:41,077           already explicitly excluding 'moleculekit.wrapping' via
2023-10-02T07:17:41,078           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,078           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,079           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,079           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,080           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,082           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,082                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,082                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,083                 directory, all directories are treated like packages.
2023-10-02T07:17:41,083           ********************************************************************************

2023-10-02T07:17:41,084   !!
2023-10-02T07:17:41,085     check.warn(importable)
2023-10-02T07:17:41,085   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-02T07:17:41,086   !!

2023-10-02T07:17:41,086           ********************************************************************************
2023-10-02T07:17:41,087           ############################
2023-10-02T07:17:41,087           # Package would be ignored #
2023-10-02T07:17:41,088           ############################
2023-10-02T07:17:41,088           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-02T07:17:41,089           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,090           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,090           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-02T07:17:41,090           to the `packages` configuration field.

2023-10-02T07:17:41,091           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,092           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,093           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,094           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,095           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,096           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-02T07:17:41,096           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-02T07:17:41,097           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,097           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,098           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,099           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,099           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,101           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,102                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,102                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,103                 directory, all directories are treated like packages.
2023-10-02T07:17:41,103           ********************************************************************************

2023-10-02T07:17:41,104   !!
2023-10-02T07:17:41,105     check.warn(importable)
2023-10-02T07:17:41,105   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-02T07:17:41,105   !!

2023-10-02T07:17:41,106           ********************************************************************************
2023-10-02T07:17:41,107           ############################
2023-10-02T07:17:41,107           # Package would be ignored #
2023-10-02T07:17:41,108           ############################
2023-10-02T07:17:41,108           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-02T07:17:41,108           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,109           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,110           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-02T07:17:41,110           to the `packages` configuration field.

2023-10-02T07:17:41,111           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,111           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,112           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,113           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,114           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,115           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-02T07:17:41,115           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-02T07:17:41,116           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,116           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,116           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,117           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,118           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,120           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,120                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,121                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,121                 directory, all directories are treated like packages.
2023-10-02T07:17:41,122           ********************************************************************************

2023-10-02T07:17:41,123   !!
2023-10-02T07:17:41,123     check.warn(importable)
2023-10-02T07:17:41,124   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-02T07:17:41,124   !!

2023-10-02T07:17:41,125           ********************************************************************************
2023-10-02T07:17:41,125           ############################
2023-10-02T07:17:41,126           # Package would be ignored #
2023-10-02T07:17:41,126           ############################
2023-10-02T07:17:41,127           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-02T07:17:41,127           but it is absent from setuptools' `packages` configuration.

2023-10-02T07:17:41,128           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T07:17:41,129           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-02T07:17:41,130           to the `packages` configuration field.

2023-10-02T07:17:41,131           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T07:17:41,131           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T07:17:41,131           instead of `find_packages(...)`/`find:`).

2023-10-02T07:17:41,132           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T07:17:41,133           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T07:17:41,134           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-02T07:17:41,134           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-02T07:17:41,135           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T07:17:41,135           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T07:17:41,136           combination with a more fine grained `package-data` configuration.

2023-10-02T07:17:41,136           You can read more about "package data files" on setuptools documentation page:

2023-10-02T07:17:41,137           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T07:17:41,139           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T07:17:41,139                 even if it does not contain any `.py` files.
2023-10-02T07:17:41,139                 On the other hand, currently there is no concept of package data
2023-10-02T07:17:41,140                 directory, all directories are treated like packages.
2023-10-02T07:17:41,140           ********************************************************************************

2023-10-02T07:17:41,141   !!
2023-10-02T07:17:41,142     check.warn(importable)
2023-10-02T07:17:41,142   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:41,143   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:41,143   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T07:17:41,144   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T07:17:41,145   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T07:17:41,145   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T07:17:41,145   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T07:17:41,146   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T07:17:41,146   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T07:17:41,147   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T07:17:41,148   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T07:17:41,148   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T07:17:41,149   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T07:17:41,149   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T07:17:41,150   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T07:17:41,150   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T07:17:41,151   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T07:17:41,151   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T07:17:41,152   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T07:17:41,152   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T07:17:41,153   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-10-02T07:17:41,153   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,154   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,154   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,154   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,155   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,155   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,156   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,156   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,157   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,157   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,158   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,158   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,159   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,159   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,159   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,160   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,161   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,161   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,162   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,162   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,163   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,163   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,164   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,164   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,165   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,166   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,166   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,166   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,167   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,167   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,168   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,168   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,169   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,169   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,170   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,170   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,171   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,171   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,172   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,172   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,173   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,173   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,174   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,174   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,175   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,175   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,176   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,176   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,177   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,178   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,178   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,179   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,179   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,180   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,180   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,181   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,181   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,182   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,182   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,182   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,183   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,183   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,184   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,184   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,185   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,185   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,186   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,186   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,187   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,187   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,188   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,188   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,189   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,189   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,190   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,190   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,191   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,192   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,192   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,193   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,194   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,194   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,195   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,195   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,195   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,196   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,196   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,197   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,197   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,198   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,198   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,199   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,199   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,200   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,200   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,201   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,202   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,204   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,206   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,208   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,211   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,213   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,215   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,217   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,219   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,221   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,223   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,225   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,227   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,229   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,231   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,233   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,235   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,237   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,239   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,241   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,243   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,245   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,247   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,249   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,251   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,253   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,255   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,257   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,259   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,261   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,263   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,265   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,267   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,269   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,271   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,273   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,275   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,277   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,280   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,282   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,284   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,285   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,287   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,289   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,291   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,293   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,295   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,297   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,299   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,301   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,303   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,305   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,307   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,309   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,311   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,313   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,315   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,317   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,319   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,322   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,324   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,326   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,328   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,330   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,333   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,335   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,337   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,339   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,341   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,343   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,344   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,346   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,348   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,350   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,352   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,354   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,357   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,358   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,360   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,363   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T07:17:41,366   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T07:17:41,368   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T07:17:41,389   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T07:17:41,391   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T07:17:41,393   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T07:17:41,394   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T07:17:41,396   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T07:17:41,397   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T07:17:41,402   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T07:17:41,403   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T07:17:41,425   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T07:17:41,427   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T07:17:41,429   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T07:17:41,449   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T07:17:41,451   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T07:17:41,453   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T07:17:41,454   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T07:17:41,457   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T07:17:41,459   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T07:17:41,461   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T07:17:41,461   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T07:17:41,465   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T07:17:41,467   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T07:17:41,469   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T07:17:41,470   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T07:17:41,492   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T07:17:41,494   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T07:17:41,495   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T07:17:41,516   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T07:17:41,518   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T07:17:41,519   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T07:17:41,539   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T07:17:41,541   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T07:17:41,541   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T07:17:41,563   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T07:17:41,574   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T07:17:41,574   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.16'
2023-10-02T07:17:41,575   running build_ext
2023-10-02T07:17:41,584   building 'moleculekit.interactions.hbonds' extension
2023-10-02T07:17:41,585   creating build/temp.linux-armv7l-cpython-311
2023-10-02T07:17:41,585   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-10-02T07:17:41,586   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T07:17:41,587   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T07:17:41,588   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-02T07:17:41,919   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:17:41,919                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:17:41,920                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:17:41,920                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-02T07:17:41,921   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:17:41,922      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:17:41,922         |  ^~~~~~~
2023-10-02T07:18:12,454   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:18:12,739   building 'moleculekit.interactions.pipi' extension
2023-10-02T07:18:12,740   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T07:18:12,740   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-10-02T07:18:13,045   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:18:13,045                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:18:13,046                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:18:13,046                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-02T07:18:13,047   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:18:13,047      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:18:13,048         |  ^~~~~~~
2023-10-02T07:18:45,811   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:18:46,094   building 'moleculekit.interactions.cationpi' extension
2023-10-02T07:18:46,094   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T07:18:46,095   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-02T07:18:46,434   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:18:46,434                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:18:46,435                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:18:46,436                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-02T07:18:46,436   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:18:46,437      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:18:46,438         |  ^~~~~~~
2023-10-02T07:19:18,864   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:19:19,153   building 'moleculekit.interactions.sigmahole' extension
2023-10-02T07:19:19,153   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T07:19:19,154   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-02T07:19:19,455   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:19:19,456                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:19:19,456                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:19:19,457                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-02T07:19:19,457   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:19:19,458      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:19:19,459         |  ^~~~~~~
2023-10-02T07:19:51,338   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:19:51,624   building 'moleculekit.wrapping' extension
2023-10-02T07:19:51,625   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T07:19:51,625   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-10-02T07:19:51,940   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:19:51,941                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:19:51,942                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:19:51,942                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-02T07:19:51,943   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:19:51,943      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:19:51,944         |  ^~~~~~~
2023-10-02T07:20:20,108   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:20:20,296   building 'moleculekit.bondguesser_utils' extension
2023-10-02T07:20:20,296   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T07:20:20,297   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-02T07:20:20,607   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:20:20,607                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:20:20,608                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:20:20,608                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-02T07:20:20,609   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:20:20,609      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:20:20,610         |  ^~~~~~~
2023-10-02T07:20:22,901   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-02T07:20:22,902   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T07:20:22,902   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-02T07:20:22,903         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T07:20:22,903   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T07:20:22,904   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-02T07:20:22,905         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T07:20:22,905   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T07:20:22,906   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-02T07:20:22,906         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T07:20:22,907   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,908   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,908         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,909   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,910   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T07:20:22,910         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,911   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,911   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,912         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,912   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,913   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,913         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,914   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,914   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T07:20:22,915         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,915   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,916   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,916         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,917   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,917   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,918         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,918   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,919   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T07:20:22,920         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,920   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,921   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,921         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,922   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,923   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,923         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,924   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,924   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,925         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,926   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,926   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,927         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,928   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,928   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,929         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,929   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,930   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T07:20:22,930         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,931   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,931   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,932         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,933   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,933   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T07:20:22,934         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,934   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,935   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,935         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,936   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,937   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T07:20:22,937         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,938   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,938   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,939         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,939   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T07:20:22,940   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T07:20:22,940         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,945   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-02T07:20:22,946   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T07:20:22,947   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-02T07:20:22,947         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-02T07:20:22,948   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T07:20:22,949   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-02T07:20:22,949         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T07:20:49,308   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:20:49,581   building 'moleculekit.atomselect_utils' extension
2023-10-02T07:20:49,582   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T07:20:49,582   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-02T07:20:49,889   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:20:49,890                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:20:49,890                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:20:49,891                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-02T07:20:49,891   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:20:49,892      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:20:49,892         |  ^~~~~~~
2023-10-02T07:20:52,422   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-02T07:20:52,423   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T07:20:52,424   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-02T07:20:52,424         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T07:20:52,432   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T07:20:52,432   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T07:20:52,433   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T07:20:52,434         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T07:20:52,441   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T07:20:52,442   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T07:20:52,442   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T07:20:52,443         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T07:21:26,896   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:21:27,191   building 'moleculekit.distance_utils' extension
2023-10-02T07:21:27,191   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T07:21:27,192   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-10-02T07:21:27,541   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:21:27,541                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:21:27,542                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:21:27,542                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-02T07:21:27,543   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:21:27,544      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:21:27,544         |  ^~~~~~~
2023-10-02T07:22:04,435   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:22:04,732   building 'moleculekit.occupancy_utils' extension
2023-10-02T07:22:04,733   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T07:22:04,733   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-02T07:22:05,275   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:22:05,276                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:22:05,276                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:22:05,277                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-02T07:22:05,277   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:22:05,278      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:22:05,278         |  ^~~~~~~
2023-10-02T07:22:32,390   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:22:32,576   building 'moleculekit.xtc' extension
2023-10-02T07:22:32,577   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T07:22:32,577   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T07:22:32,578   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-10-02T07:22:33,218   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,219      66 |         "OK",
2023-10-02T07:22:33,219         |         ^~~~
2023-10-02T07:22:33,220   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,221      67 |         "Header",
2023-10-02T07:22:33,222         |         ^~~~~~~~
2023-10-02T07:22:33,222   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,223      68 |         "String",
2023-10-02T07:22:33,223         |         ^~~~~~~~
2023-10-02T07:22:33,224   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,225      69 |         "Double",
2023-10-02T07:22:33,225         |         ^~~~~~~~
2023-10-02T07:22:33,226   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,227      70 |         "Integer",
2023-10-02T07:22:33,227         |         ^~~~~~~~~
2023-10-02T07:22:33,228   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,229      71 |         "Float",
2023-10-02T07:22:33,229         |         ^~~~~~~
2023-10-02T07:22:33,230   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,231      72 |         "Unsigned integer",
2023-10-02T07:22:33,232         |         ^~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,232   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,233      73 |         "Compressed 3D coordinate",
2023-10-02T07:22:33,233         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,234   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,234      74 |         "Closing file",
2023-10-02T07:22:33,235         |         ^~~~~~~~~~~~~~
2023-10-02T07:22:33,235   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,236      75 |         "Magic number",
2023-10-02T07:22:33,236         |         ^~~~~~~~~~~~~~
2023-10-02T07:22:33,237   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,237      76 |         "Not enough memory",
2023-10-02T07:22:33,238         |         ^~~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,239   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,239      77 |         "End of file",
2023-10-02T07:22:33,240         |         ^~~~~~~~~~~~~
2023-10-02T07:22:33,240   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T07:22:33,241      78 |         "File not found"
2023-10-02T07:22:33,241         |         ^~~~~~~~~~~~~~~~
2023-10-02T07:22:33,242   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-02T07:22:33,243   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,243     459 |     while (size >= num && num_of_bits < 32)
2023-10-02T07:22:33,244         |            ~~~~~^~~~~~
2023-10-02T07:22:33,244   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-02T07:22:33,245   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,246     505 |     while (bytes[num_of_bytes] >= num)
2023-10-02T07:22:33,247         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-02T07:22:33,248   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-02T07:22:33,248   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,249     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-02T07:22:33,250         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,250   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,251     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-10-02T07:22:33,252         |                             ~~^~~~~~~~~~~~~~
2023-10-02T07:22:33,252   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,253     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-10-02T07:22:33,253         |                             ~~^~~~~~~~~~~~~~~~
2023-10-02T07:22:33,254   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-02T07:22:33,254   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,255     664 |                 if (lastbits < num_of_bits)
2023-10-02T07:22:33,256         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-10-02T07:22:33,258   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-02T07:22:33,258   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,259     785 |         if(size3>xfp->buf1size)
2023-10-02T07:22:33,259         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T07:22:33,261   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,262     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T07:22:33,262         |                          ^
2023-10-02T07:22:33,266   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,266     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,267         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,268   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,268     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,269         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,269   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,270     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,270         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,271   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,272     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,272         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,273   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,273     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,274         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,274   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,275     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T07:22:33,276         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T07:22:33,276   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,277     756 |         int smallidx,  minidx, maxidx;
2023-10-02T07:22:33,277         |                        ^~~~~~
2023-10-02T07:22:33,278   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,279     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T07:22:33,279         |                                ^~~~~~
2023-10-02T07:22:33,280   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T07:22:33,281     763 |         int errval=1;
2023-10-02T07:22:33,281         |             ^~~~~~
2023-10-02T07:22:33,282   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-02T07:22:33,282   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,283    1011 |         if(size3>xfp->buf1size)
2023-10-02T07:22:33,283         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T07:22:33,284   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,284    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T07:22:33,285         |                                 ~~~~~~~~^~~~~~~
2023-10-02T07:22:33,286   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,286    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T07:22:33,287         |                           ~~~~~~~~^~~~~~~
2023-10-02T07:22:33,287   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,288    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T07:22:33,288         |                           ~~~~~~~~^~~~~~~
2023-10-02T07:22:33,289   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,290    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-02T07:22:33,290         |                         ^
2023-10-02T07:22:33,291   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,291    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T07:22:33,292         |                          ^
2023-10-02T07:22:33,293   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,293    1275 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T07:22:33,294         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,294   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,295    1001 |         int errval;
2023-10-02T07:22:33,296         |             ^~~~~~
2023-10-02T07:22:33,296   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-02T07:22:33,297   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,298    1316 |         if(size3>xfp->buf1size)
2023-10-02T07:22:33,298         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T07:22:33,300   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,300    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T07:22:33,301         |                          ^
2023-10-02T07:22:33,304   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,306    1289 |         int smallidx,  maxidx, minidx;
2023-10-02T07:22:33,308         |                                ^~~~~~
2023-10-02T07:22:33,311   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,312    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T07:22:33,313         |                                ^~~~~~
2023-10-02T07:22:33,315   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T07:22:33,316    1297 |         int errval=1;
2023-10-02T07:22:33,317         |             ^~~~~~
2023-10-02T07:22:33,319   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-02T07:22:33,320   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,321    1513 |         if(size3>xfp->buf1size) {
2023-10-02T07:22:33,322         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T07:22:33,323   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,324    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-02T07:22:33,325         |                         ^
2023-10-02T07:22:33,326   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T07:22:33,363    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T07:22:33,363         |                          ^
2023-10-02T07:22:33,364   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T07:22:33,364    1743 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T07:22:33,365         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T07:22:33,366   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T07:22:33,366    1504 |         int errval=1;
2023-10-02T07:22:33,367         |             ^~~~~~
2023-10-02T07:22:36,164   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-02T07:22:36,427   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-10-02T07:22:37,223   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-02T07:22:37,224   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T07:22:37,224     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-02T07:22:37,225         |             ^~~
2023-10-02T07:22:37,234   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-02T07:22:37,234   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T07:22:37,235     418 |         int nf3 = nframes * 3;
2023-10-02T07:22:37,236         |             ^~~
2023-10-02T07:22:37,242   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-02T07:22:37,242   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-02T07:22:37,243     491 |         int reading_index = 0;
2023-10-02T07:22:37,243         |             ^~~~~~~~~~~~~
2023-10-02T07:22:37,244   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-02T07:22:37,244     492 |         int writing_index = 0;
2023-10-02T07:22:37,245         |             ^~~~~~~~~~~~~
2023-10-02T07:22:38,122   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-10-02T07:22:38,429   In file included from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T07:22:38,430                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T07:22:38,430                    from /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T07:22:38,430                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-02T07:22:38,431   /tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T07:22:38,432      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T07:22:38,432         |  ^~~~~~~
2023-10-02T07:23:02,424   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:23:02,703   building 'moleculekit.tmalign' extension
2023-10-02T07:23:02,704   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T07:23:02,704   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T07:23:02,705   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-10-02T07:23:36,483   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3kfp5xfx/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-10-02T07:23:59,027   In file included from /usr/include/c++/12/vector:70,
2023-10-02T07:23:59,027                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-02T07:23:59,028   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-02T07:23:59,029   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-02T07:23:59,029     439 |       vector<_Tp, _Alloc>::
2023-10-02T07:23:59,030         |       ^~~~~~~~~~~~~~~~~~~
2023-10-02T07:23:59,827   In file included from /usr/include/c++/12/vector:64:
2023-10-02T07:23:59,828   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T07:23:59,829       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20812:32,
2023-10-02T07:23:59,829       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T07:23:59,830   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T07:23:59,830    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T07:23:59,831         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T07:23:59,832   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T07:23:59,832       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20826:33,
2023-10-02T07:23:59,833       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T07:23:59,834   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T07:23:59,834    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T07:23:59,835         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T07:23:59,835   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T07:23:59,836       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20911:34,
2023-10-02T07:23:59,837       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T07:23:59,837   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T07:23:59,838    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T07:23:59,839         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T07:24:02,186   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-10-02T07:24:02,584   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T07:24:02,585   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.16'
2023-10-02T07:24:02,585   installing to build/bdist.linux-armv7l/wheel
2023-10-02T07:24:02,595   running install
2023-10-02T07:24:02,610   running install_lib
2023-10-02T07:24:02,678   creating build/bdist.linux-armv7l
2023-10-02T07:24:02,680   creating build/bdist.linux-armv7l/wheel
2023-10-02T07:24:02,683   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,689   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T07:24:02,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T07:24:02,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T07:24:02,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T07:24:02,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,776   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,805   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T07:24:02,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T07:24:02,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T07:24:02,810   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T07:24:02,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T07:24:02,815   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T07:24:02,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T07:24:02,841   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T07:24:02,844   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,852   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T07:24:02,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T07:24:02,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T07:24:02,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T07:24:02,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T07:24:02,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,864   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T07:24:02,870   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T07:24:02,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T07:24:02,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T07:24:02,894   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T07:24:02,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T07:24:02,898   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T07:24:02,901   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T07:24:02,904   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T07:24:02,905   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T07:24:02,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T07:24:02,913   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T07:24:02,915   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T07:24:02,918   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,920   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:02,924   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,931   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,937   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,944   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,947   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T07:24:02,948   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T07:24:02,951   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T07:24:02,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T07:24:02,970   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:02,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:02,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:03,003   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T07:24:03,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T07:24:03,007   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T07:24:03,063   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T07:24:03,064   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T07:24:03,101   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T07:24:03,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:03,127   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T07:24:03,129   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T07:24:03,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T07:24:03,154   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:03,157   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:03,176   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T07:24:03,177   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T07:24:03,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T07:24:03,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T07:24:03,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,258   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T07:24:03,259   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T07:24:03,263   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T07:24:03,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T07:24:03,268   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T07:24:03,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T07:24:03,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T07:24:03,308   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T07:24:03,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,338   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T07:24:03,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T07:24:03,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T07:24:03,375   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T07:24:03,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T07:24:03,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T07:24:03,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,412   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T07:24:03,414   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T07:24:03,416   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T07:24:03,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T07:24:03,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T07:24:03,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T07:24:03,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T07:24:03,428   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T07:24:03,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T07:24:03,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T07:24:03,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T07:24:03,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T07:24:03,440   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T07:24:03,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T07:24:03,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T07:24:03,445   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,448   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T07:24:03,449   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T07:24:03,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T07:24:03,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,496   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T07:24:03,497   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T07:24:03,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T07:24:03,531   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:03,543   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T07:24:03,544   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T07:24:03,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T07:24:03,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T07:24:03,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T07:24:03,552   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-02T07:24:03,556   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,560   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,562   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,564   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,569   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,571   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,574   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,579   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,581   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,583   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,585   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,588   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,592   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,615   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,617   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,641   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,643   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,647   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,649   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,651   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,659   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,661   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,666   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,673   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,696   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,708   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,712   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,725   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,728   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,745   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,754   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,757   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,759   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,774   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,776   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,778   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,783   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,799   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,801   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,808   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,810   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,817   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,824   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-02T07:24:03,839   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,841   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,848   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,854   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,856   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,866   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,868   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,870   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,872   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T07:24:03,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T07:24:04,064   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,068   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,073   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,085   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,087   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,095   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T07:24:04,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,109   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,136   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,186   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T07:24:04,189   running install_egg_info
2023-10-02T07:24:04,194   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.16-py3.11.egg-info
2023-10-02T07:24:04,206   running install_scripts
2023-10-02T07:24:04,255   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.16.dist-info/WHEEL
2023-10-02T07:24:04,258   creating '/tmp/pip-wheel-5nahy03e/.tmp-7qcilcw3/moleculekit-1.7.16-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-02T07:24:04,260   adding 'moleculekit/__init__.py'
2023-10-02T07:24:04,262   adding 'moleculekit/_version.py'
2023-10-02T07:24:04,264   adding 'moleculekit/align.py'
2023-10-02T07:24:04,594   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:04,609   adding 'moleculekit/bondguesser.py'
2023-10-02T07:24:04,854   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:04,864   adding 'moleculekit/config.py'
2023-10-02T07:24:04,866   adding 'moleculekit/dihedral.py'
2023-10-02T07:24:04,867   adding 'moleculekit/distance.py'
2023-10-02T07:24:05,166   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:05,178   adding 'moleculekit/home.py'
2023-10-02T07:24:05,180   adding 'moleculekit/logging.ini'
2023-10-02T07:24:05,193   adding 'moleculekit/molecule.py'
2023-10-02T07:24:05,421   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:05,431   adding 'moleculekit/opm.py'
2023-10-02T07:24:05,433   adding 'moleculekit/periodictable.py'
2023-10-02T07:24:05,434   adding 'moleculekit/pymolgraphics.py'
2023-10-02T07:24:05,435   adding 'moleculekit/rcsb.py'
2023-10-02T07:24:05,436   adding 'moleculekit/rdkitintegration.py'
2023-10-02T07:24:05,448   adding 'moleculekit/readers.py'
2023-10-02T07:24:06,049   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:06,076   adding 'moleculekit/util.py'
2023-10-02T07:24:06,077   adding 'moleculekit/version.py'
2023-10-02T07:24:06,079   adding 'moleculekit/viewer.py'
2023-10-02T07:24:06,080   adding 'moleculekit/vmd_wrapper'
2023-10-02T07:24:06,082   adding 'moleculekit/vmdgraphics.py'
2023-10-02T07:24:06,084   adding 'moleculekit/vmdviewer.py'
2023-10-02T07:24:06,320   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:06,334   adding 'moleculekit/writers.py'
2023-10-02T07:24:06,593   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:06,604   adding 'moleculekit/atomselect/__init__.py'
2023-10-02T07:24:06,605   adding 'moleculekit/atomselect/analyze.py'
2023-10-02T07:24:06,608   adding 'moleculekit/atomselect/atomselect.py'
2023-10-02T07:24:06,610   adding 'moleculekit/atomselect/languageparser.py'
2023-10-02T07:24:06,713   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-02T07:24:06,727   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-02T07:24:06,817   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-02T07:24:06,829   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-02T07:24:06,929   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-02T07:24:06,941   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-02T07:24:06,943   adding 'moleculekit/interactions/__init__.py'
2023-10-02T07:24:07,223   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:07,490   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:07,503   adding 'moleculekit/interactions/interactions.py'
2023-10-02T07:24:07,779   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:08,067   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T07:24:08,171   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-02T07:24:08,182   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-02T07:24:08,272   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-02T07:24:08,282   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-02T07:24:08,374   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-02T07:24:08,385   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-02T07:24:08,475   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-02T07:24:08,486   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-02T07:24:08,571   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-02T07:24:08,582   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-02T07:24:08,583   adding 'moleculekit/pdbx/__init__.py'
2023-10-02T07:24:08,587   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-02T07:24:08,590   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-02T07:24:08,592   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-02T07:24:08,593   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-02T07:24:08,595   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-02T07:24:08,597   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-02T07:24:08,598   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-02T07:24:08,599   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-02T07:24:08,601   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-02T07:24:08,602   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-02T07:24:08,604   adding 'moleculekit/ply/__init__.py'
2023-10-02T07:24:08,608   adding 'moleculekit/ply/lex.py'
2023-10-02T07:24:08,620   adding 'moleculekit/ply/yacc.py'
2023-10-02T07:24:08,622   adding 'moleculekit/projections/__init__.py'
2023-10-02T07:24:08,624   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-02T07:24:08,627   adding 'moleculekit/projections/metricdihedral.py'
2023-10-02T07:24:08,631   adding 'moleculekit/projections/metricdistance.py'
2023-10-02T07:24:08,633   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-02T07:24:08,635   adding 'moleculekit/projections/metricgyration.py'
2023-10-02T07:24:08,638   adding 'moleculekit/projections/metricplumed2.py'
2023-10-02T07:24:08,640   adding 'moleculekit/projections/metricrmsd.py'
2023-10-02T07:24:08,642   adding 'moleculekit/projections/metricsasa.py'
2023-10-02T07:24:08,644   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-02T07:24:08,646   adding 'moleculekit/projections/metricshell.py'
2023-10-02T07:24:08,647   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-02T07:24:08,649   adding 'moleculekit/projections/metrictmscore.py'
2023-10-02T07:24:08,650   adding 'moleculekit/projections/projection.py'
2023-10-02T07:24:08,651   adding 'moleculekit/projections/util.py'
2023-10-02T07:24:08,653   adding 'moleculekit/share/ALA.cif'
2023-10-02T07:24:08,654   adding 'moleculekit/share/backbone.cif'
2023-10-02T07:24:09,958   adding 'moleculekit/share/opm_sequences.json'
2023-10-02T07:24:10,067   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-02T07:24:10,072   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-02T07:24:10,073   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-02T07:24:10,074   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-02T07:24:10,076   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-02T07:24:10,077   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-02T07:24:10,078   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-02T07:24:10,079   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-02T07:24:10,080   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-02T07:24:10,081   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-02T07:24:10,083   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-02T07:24:10,084   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-02T07:24:10,085   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-02T07:24:10,086   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-02T07:24:10,087   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-02T07:24:10,089   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-02T07:24:10,090   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-02T07:24:10,091   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-02T07:24:10,092   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-02T07:24:10,093   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-02T07:24:10,094   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-02T07:24:10,096   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-02T07:24:10,097   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-02T07:24:10,098   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-02T07:24:10,100   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-02T07:24:10,101   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-02T07:24:10,102   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-02T07:24:10,103   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-02T07:24:10,104   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-02T07:24:10,106   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-02T07:24:10,107   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-02T07:24:10,108   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-02T07:24:10,109   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-02T07:24:10,110   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-02T07:24:10,112   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-02T07:24:10,113   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-02T07:24:10,114   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-02T07:24:10,115   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-02T07:24:10,116   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-02T07:24:10,117   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-02T07:24:10,118   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-02T07:24:10,119   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-02T07:24:10,120   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-02T07:24:10,122   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-02T07:24:10,123   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-02T07:24:10,124   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-02T07:24:10,125   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-02T07:24:10,126   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-02T07:24:10,127   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-02T07:24:10,129   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-02T07:24:10,130   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-02T07:24:10,131   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-02T07:24:10,132   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-02T07:24:10,133   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-02T07:24:10,134   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-02T07:24:10,136   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-02T07:24:10,137   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-02T07:24:10,138   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-02T07:24:10,139   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-02T07:24:10,140   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-02T07:24:10,141   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-02T07:24:10,142   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-02T07:24:10,144   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-02T07:24:10,145   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-02T07:24:10,146   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-02T07:24:10,147   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-02T07:24:10,148   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-02T07:24:10,149   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-02T07:24:10,151   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-02T07:24:10,152   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-02T07:24:10,153   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-02T07:24:10,154   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-02T07:24:10,156   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-02T07:24:10,157   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-02T07:24:10,158   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-02T07:24:10,159   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-02T07:24:10,160   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-02T07:24:10,161   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-02T07:24:10,163   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-02T07:24:10,164   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-02T07:24:10,165   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-02T07:24:10,166   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-02T07:24:10,167   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-02T07:24:10,169   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-02T07:24:10,170   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-02T07:24:10,171   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-02T07:24:10,172   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-02T07:24:10,174   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-02T07:24:10,175   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-02T07:24:10,176   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-02T07:24:10,177   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-02T07:24:10,179   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-02T07:24:10,180   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-02T07:24:10,181   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-02T07:24:10,182   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-02T07:24:10,184   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-02T07:24:10,185   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-02T07:24:10,186   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-02T07:24:10,187   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-02T07:24:10,188   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-02T07:24:10,189   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-02T07:24:10,191   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-02T07:24:10,192   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-02T07:24:10,193   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-02T07:24:10,194   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-02T07:24:10,195   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-02T07:24:10,196   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-02T07:24:10,198   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-02T07:24:10,199   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-02T07:24:10,200   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-02T07:24:10,201   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-02T07:24:10,202   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-02T07:24:10,203   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-02T07:24:10,204   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-02T07:24:10,205   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-02T07:24:10,207   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-02T07:24:10,208   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-02T07:24:10,209   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-02T07:24:10,210   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-02T07:24:10,211   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-02T07:24:10,213   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-02T07:24:10,214   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-02T07:24:10,215   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-02T07:24:10,216   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-02T07:24:10,217   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-02T07:24:10,219   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-02T07:24:10,220   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-02T07:24:10,221   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-02T07:24:10,222   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-02T07:24:10,224   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-02T07:24:10,225   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-02T07:24:10,226   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-02T07:24:10,227   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-02T07:24:10,228   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-02T07:24:10,229   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-02T07:24:10,231   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-02T07:24:10,232   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-02T07:24:10,233   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-02T07:24:10,234   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-02T07:24:10,235   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-02T07:24:10,236   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-02T07:24:10,237   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-02T07:24:10,238   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-02T07:24:10,240   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-02T07:24:10,241   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-02T07:24:10,242   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-02T07:24:10,243   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-02T07:24:10,244   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-02T07:24:10,245   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-02T07:24:10,246   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-02T07:24:10,247   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-02T07:24:10,249   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-02T07:24:10,250   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-02T07:24:10,251   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-02T07:24:10,252   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-02T07:24:10,254   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-02T07:24:10,255   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-02T07:24:10,256   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-02T07:24:10,257   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-02T07:24:10,258   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-02T07:24:10,260   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-02T07:24:10,261   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-02T07:24:10,262   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-02T07:24:10,264   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-02T07:24:10,265   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-02T07:24:10,266   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-02T07:24:10,267   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-02T07:24:10,268   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-02T07:24:10,269   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-02T07:24:10,271   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-02T07:24:10,272   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-02T07:24:10,273   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-02T07:24:10,274   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-02T07:24:10,275   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-02T07:24:10,277   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-02T07:24:10,278   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-02T07:24:10,280   adding 'moleculekit/smallmol/__init__.py'
2023-10-02T07:24:10,285   adding 'moleculekit/smallmol/smallmol.py'
2023-10-02T07:24:10,287   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-02T07:24:10,289   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-02T07:24:10,291   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-02T07:24:10,293   adding 'moleculekit/smallmol/util.py'
2023-10-02T07:24:10,294   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-02T07:24:10,296   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-02T07:24:10,297   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-02T07:24:10,299   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-02T07:24:10,387   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-02T07:24:10,398   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-02T07:24:10,400   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-02T07:24:10,401   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-02T07:24:10,419   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-02T07:24:10,422   adding 'moleculekit/tools/__init__.py'
2023-10-02T07:24:10,425   adding 'moleculekit/tools/atomtyper.py'
2023-10-02T07:24:10,427   adding 'moleculekit/tools/autosegment.py'
2023-10-02T07:24:10,429   adding 'moleculekit/tools/crystalpacking.py'
2023-10-02T07:24:10,432   adding 'moleculekit/tools/detect.py'
2023-10-02T07:24:10,434   adding 'moleculekit/tools/docking.py'
2023-10-02T07:24:10,436   adding 'moleculekit/tools/graphalignment.py'
2023-10-02T07:24:10,437   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-02T07:24:10,438   adding 'moleculekit/tools/moleculechecks.py'
2023-10-02T07:24:10,445   adding 'moleculekit/tools/preparation.py'
2023-10-02T07:24:10,447   adding 'moleculekit/tools/preparation_customres.py'
2023-10-02T07:24:10,449   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-02T07:24:10,452   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-02T07:24:10,454   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-02T07:24:10,455   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-02T07:24:10,545   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-02T07:24:10,556   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-02T07:24:10,644   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-02T07:24:10,654   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-02T07:24:10,655   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-02T07:24:10,658   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-02T07:24:10,660   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-02T07:24:10,661   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-02T07:24:10,668   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-02T07:24:10,670   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-02T07:24:10,672   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-02T07:24:10,674   adding 'moleculekit-1.7.16.dist-info/LICENSE'
2023-10-02T07:24:10,675   adding 'moleculekit-1.7.16.dist-info/METADATA'
2023-10-02T07:24:10,676   adding 'moleculekit-1.7.16.dist-info/WHEEL'
2023-10-02T07:24:10,677   adding 'moleculekit-1.7.16.dist-info/top_level.txt'
2023-10-02T07:24:10,681   adding 'moleculekit-1.7.16.dist-info/RECORD'
2023-10-02T07:24:10,827   removing build/bdist.linux-armv7l/wheel
2023-10-02T07:24:11,114   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-02T07:24:11,661   Created wheel for moleculekit: filename=moleculekit-1.7.16-cp311-cp311-linux_armv7l.whl size=12838195 sha256=f28f500575f205eec192ccdef440cc9251078cb91602e9561783d6b973566dd4
2023-10-02T07:24:11,662   Stored in directory: /tmp/pip-ephem-wheel-cache-vfnn6dqp/wheels/b7/b8/ab/9feb16be4e4a7dcbc13b545e49a9e557ba293cdf5181714177
2023-10-02T07:24:11,686 Successfully built moleculekit
2023-10-02T07:24:11,994 Removed build tracker: '/tmp/pip-build-tracker-lz1_pufy'