2023-10-02T11:03:44,925 Created temporary directory: /tmp/pip-build-tracker-oesz0o6a
2023-10-02T11:03:44,926 Initialized build tracking at /tmp/pip-build-tracker-oesz0o6a
2023-10-02T11:03:44,926 Created build tracker: /tmp/pip-build-tracker-oesz0o6a
2023-10-02T11:03:44,927 Entered build tracker: /tmp/pip-build-tracker-oesz0o6a
2023-10-02T11:03:44,928 Created temporary directory: /tmp/pip-wheel-aat62wiq
2023-10-02T11:03:44,931 Created temporary directory: /tmp/pip-ephem-wheel-cache-yqk37fz1
2023-10-02T11:03:44,955 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T11:03:44,959 2 location(s) to search for versions of moleculekit:
2023-10-02T11:03:44,959 * https://pypi.org/simple/moleculekit/
2023-10-02T11:03:44,959 * https://www.piwheels.org/simple/moleculekit/
2023-10-02T11:03:44,960 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-02T11:03:44,961 Getting page https://pypi.org/simple/moleculekit/
2023-10-02T11:03:44,962 Found index url https://pypi.org/simple/
2023-10-02T11:03:45,120 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-02T11:03:45,157   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,158   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-02T11:03:45,158   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,159   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-02T11:03:45,160   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,161   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-02T11:03:45,161   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,162   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-02T11:03:45,163   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,163   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-02T11:03:45,164   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,165   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-02T11:03:45,166   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,166   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-02T11:03:45,167   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,168   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-02T11:03:45,168   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,169   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-02T11:03:45,169   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,170   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-02T11:03:45,170   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,171   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-02T11:03:45,172   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,173   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-02T11:03:45,173   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,174   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-02T11:03:45,175   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,175   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-02T11:03:45,176   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,177   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-02T11:03:45,178   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,178   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-02T11:03:45,179   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,179   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-02T11:03:45,180   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,180   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-02T11:03:45,181   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,182   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-02T11:03:45,182   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,183   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-02T11:03:45,184   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,184   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-02T11:03:45,185   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,186   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-02T11:03:45,186   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,187   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-02T11:03:45,188   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,189   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-02T11:03:45,189   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,190   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-02T11:03:45,190   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,191   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-02T11:03:45,191   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,192   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-02T11:03:45,193   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,193   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-02T11:03:45,194   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,195   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-02T11:03:45,195   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,196   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-02T11:03:45,197   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,197   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-02T11:03:45,198   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,199   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-02T11:03:45,200   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-02T11:03:45,200   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-10-02T11:03:45,201   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-02T11:03:45,247   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2023-10-02T11:03:45,248   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2023-10-02T11:03:45,249   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2023-10-02T11:03:45,250   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2023-10-02T11:03:45,250   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
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2023-10-02T11:03:45,252   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
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2023-10-02T11:03:45,254   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2023-10-02T11:03:45,255   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2023-10-02T11:03:45,255   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
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2023-10-02T11:03:45,256   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2023-10-02T11:03:45,257   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
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2023-10-02T11:03:45,258   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
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2023-10-02T11:03:45,260   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2023-10-02T11:03:45,260   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
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2023-10-02T11:03:45,262   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2023-10-02T11:03:45,263   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2023-10-02T11:03:45,263   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-10-02T11:03:45,264   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-10-02T11:03:45,265   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-10-02T11:03:45,266   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-10-02T11:03:45,267   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-10-02T11:03:45,267   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-10-02T11:03:45,268   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-10-02T11:03:45,268   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-10-02T11:03:45,269   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-10-02T11:03:45,270   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-10-02T11:03:45,270   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-10-02T11:03:45,271   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2023-10-02T11:03:45,271   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2023-10-02T11:03:45,272   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2023-10-02T11:03:45,273   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2023-10-02T11:03:45,274   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2023-10-02T11:03:45,275   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2023-10-02T11:03:45,275   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2023-10-02T11:03:45,276   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2023-10-02T11:03:45,277   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2023-10-02T11:03:45,277   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2023-10-02T11:03:45,278   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
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2023-10-02T11:03:45,280   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2023-10-02T11:03:45,281   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2023-10-02T11:03:45,282   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-10-02T11:03:45,283   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-10-02T11:03:45,284   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-10-02T11:03:45,284   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-10-02T11:03:45,285   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-10-02T11:03:45,287   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-10-02T11:03:45,287   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-10-02T11:03:45,289   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-10-02T11:03:45,290   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-10-02T11:03:45,291   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-10-02T11:03:45,292   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-10-02T11:03:45,293   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2023-10-02T11:03:45,294   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2023-10-02T11:03:45,295   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2023-10-02T11:03:45,296   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2023-10-02T11:03:45,297   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-10-02T11:03:45,298   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2023-10-02T11:03:45,299   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2023-10-02T11:03:45,299   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2023-10-02T11:03:45,300   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
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2023-10-02T11:03:45,302   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-02T11:03:45,303   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-02T11:03:45,304   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-02T11:03:45,305   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-02T11:03:45,306   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-02T11:03:45,307   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-02T11:03:45,308   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-02T11:03:45,309   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-02T11:03:45,310   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-02T11:03:45,311   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-02T11:03:45,312   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-02T11:03:45,313   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-02T11:03:45,314   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-02T11:03:45,315   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-02T11:03:45,316   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-02T11:03:45,317 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-02T11:03:45,317 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-02T11:03:45,319 Found index url https://www.piwheels.org/simple/
2023-10-02T11:03:45,484 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-02T11:03:45,602   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,602   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,605   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,622   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,622   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,623   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,623   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,629   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,629   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,657   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,665   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,668   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-02T11:03:45,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-02T11:03:45,682 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
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2023-10-02T11:03:45,722 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-02T11:03:45,741 Collecting moleculekit==1.7.17
2023-10-02T11:03:45,743   Created temporary directory: /tmp/pip-unpack-r12u_z7z
2023-10-02T11:03:45,884   Downloading moleculekit-1.7.17.tar.gz (6.2 MB)
2023-10-02T11:03:48,262   Added moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz to build tracker '/tmp/pip-build-tracker-oesz0o6a'
2023-10-02T11:03:48,271   Created temporary directory: /tmp/pip-build-env-ygl4rhu4
2023-10-02T11:03:48,275   Installing build dependencies: started
2023-10-02T11:03:48,277   Running command pip subprocess to install build dependencies
2023-10-02T11:03:49,411   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-02T11:03:50,156   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T11:03:51,700   Collecting setuptools
2023-10-02T11:03:51,777     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-02T11:03:52,515     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T11:03:52,523     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T11:03:52,530     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T11:03:52,536     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T11:03:52,543     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-02T11:03:52,944   Collecting numpy>=1.18.5
2023-10-02T11:03:56,013     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-10-02T11:03:58,103   Collecting Cython>=0.29.21
2023-10-02T11:03:58,914     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-10-02T11:03:59,309   Collecting toml
2023-10-02T11:03:59,318     Downloading https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-02T11:03:59,494   Collecting versioneer[toml]==0.28
2023-10-02T11:03:59,504     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-02T11:03:59,522        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 4.0 MB/s eta 0:00:00
2023-10-02T11:04:02,192   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-10-02T11:04:02,224     Creating /tmp/pip-build-env-ygl4rhu4/overlay/local/bin
2023-10-02T11:04:02,226     changing mode of /tmp/pip-build-env-ygl4rhu4/overlay/local/bin/versioneer to 755
2023-10-02T11:04:20,528     changing mode of /tmp/pip-build-env-ygl4rhu4/overlay/local/bin/f2py to 755
2023-10-02T11:04:27,041     changing mode of /tmp/pip-build-env-ygl4rhu4/overlay/local/bin/cygdb to 755
2023-10-02T11:04:27,044     changing mode of /tmp/pip-build-env-ygl4rhu4/overlay/local/bin/cython to 755
2023-10-02T11:04:27,046     changing mode of /tmp/pip-build-env-ygl4rhu4/overlay/local/bin/cythonize to 755
2023-10-02T11:04:27,095   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 versioneer-0.28
2023-10-02T11:04:28,720   Installing build dependencies: finished with status 'done'
2023-10-02T11:04:28,723   Getting requirements to build wheel: started
2023-10-02T11:04:28,725   Running command Getting requirements to build wheel
2023-10-02T11:05:16,309   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,310   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,311   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,311   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,312   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,312   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,313   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,313   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,314   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,314   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-10-02T11:05:16,314   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-02T11:05:16,315   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-02T11:05:16,315   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-02T11:05:16,316   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-02T11:05:16,316   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-02T11:05:16,317   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-02T11:05:16,317   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-02T11:05:16,318   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-02T11:05:16,318   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
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2023-10-02T11:05:16,319   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-02T11:05:16,320   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-02T11:05:16,612   running egg_info
2023-10-02T11:05:16,618   writing moleculekit.egg-info/PKG-INFO
2023-10-02T11:05:16,622   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T11:05:16,624   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T11:05:16,626   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-02T11:05:16,647   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,648   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,648   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,649   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,650   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,650   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,651   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,651   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,652   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,652   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,652   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,653   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,653   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,654   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,654   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,655   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,655   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,656   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,656   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,657   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,657   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,658   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,658   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,659   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T11:05:16,663   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,663   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,664   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,664   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,665   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,665   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,666   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,666   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,667   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,668   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,668   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,669   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,669   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,669   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,670   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,670   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,671   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,671   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,671   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,672   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,672   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,673   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,673   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:16,674   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:16,702   reading manifest template 'MANIFEST.in'
2023-10-02T11:05:16,969   no previously-included directories found matching 'moleculekit/test-data'
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2023-10-02T11:05:16,974   adding license file 'LICENSE'
2023-10-02T11:05:16,988   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:18,170   Getting requirements to build wheel: finished with status 'done'
2023-10-02T11:05:18,185   Installing backend dependencies: started
2023-10-02T11:05:18,186   Running command pip subprocess to install backend dependencies
2023-10-02T11:05:20,264   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-02T11:05:21,309   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-02T11:05:21,831   Collecting wheel
2023-10-02T11:05:21,850     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-02T11:05:24,331   Installing collected packages: wheel
2023-10-02T11:05:24,551     Creating /tmp/pip-build-env-ygl4rhu4/normal/local/bin
2023-10-02T11:05:24,553     changing mode of /tmp/pip-build-env-ygl4rhu4/normal/local/bin/wheel to 755
2023-10-02T11:05:24,565   Successfully installed wheel-0.41.2
2023-10-02T11:05:25,013   Installing backend dependencies: finished with status 'done'
2023-10-02T11:05:25,014   Created temporary directory: /tmp/pip-modern-metadata-7fd2r0d_
2023-10-02T11:05:25,017   Preparing metadata (pyproject.toml): started
2023-10-02T11:05:25,018   Running command Preparing metadata (pyproject.toml)
2023-10-02T11:05:27,378   running dist_info
2023-10-02T11:05:27,379   creating /tmp/pip-modern-metadata-7fd2r0d_/moleculekit.egg-info
2023-10-02T11:05:27,385   writing /tmp/pip-modern-metadata-7fd2r0d_/moleculekit.egg-info/PKG-INFO
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2023-10-02T11:05:27,418   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,419   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,419   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,420   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,420   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,421   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,422   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,422   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,423   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,423   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,424   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,424   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,425   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,425   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,426   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,426   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,427   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,427   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,428   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,428   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,429   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,429   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,430   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,430   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,431   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,432   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,432   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,433   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,433   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,434   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T11:05:27,435   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,436   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,436   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,437   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-02T11:05:27,438   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,438   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,439   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,439   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,440   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,440   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,441   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,441   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,442   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,442   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,443   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,443   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,444   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,445   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,445   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,446   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,446   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,446   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,447   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:27,447   reading manifest file '/tmp/pip-modern-metadata-7fd2r0d_/moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:27,448   reading manifest template 'MANIFEST.in'
2023-10-02T11:05:27,942   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T11:05:27,943   no previously-included directories found matching 'moleculekit/tests'
2023-10-02T11:05:27,944   no previously-included directories found matching 'package'
2023-10-02T11:05:27,945   adding license file 'LICENSE'
2023-10-02T11:05:27,955   writing manifest file '/tmp/pip-modern-metadata-7fd2r0d_/moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:27,962   creating '/tmp/pip-modern-metadata-7fd2r0d_/moleculekit-1.7.17.dist-info'
2023-10-02T11:05:28,212   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-02T11:05:28,217   Source in /tmp/pip-wheel-aat62wiq/moleculekit_f750c7c313264ba7bc11c4e8d07aa8f4 has version 1.7.17, which satisfies requirement moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz
2023-10-02T11:05:28,218   Removed moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz from build tracker '/tmp/pip-build-tracker-oesz0o6a'
2023-10-02T11:05:28,224 Created temporary directory: /tmp/pip-unpack-xv6cxv3s
2023-10-02T11:05:28,225 Created temporary directory: /tmp/pip-unpack-tvf36zpd
2023-10-02T11:05:28,233 Building wheels for collected packages: moleculekit
2023-10-02T11:05:28,237   Created temporary directory: /tmp/pip-wheel-mlzshh12
2023-10-02T11:05:28,238   Destination directory: /tmp/pip-wheel-mlzshh12
2023-10-02T11:05:28,240   Building wheel for moleculekit (pyproject.toml): started
2023-10-02T11:05:28,241   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-02T11:05:30,384   running bdist_wheel
2023-10-02T11:05:30,399   running build
2023-10-02T11:05:30,400   running build_py
2023-10-02T11:05:30,406   creating build
2023-10-02T11:05:30,407   creating build/lib.linux-armv7l-cpython-311
2023-10-02T11:05:30,408   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,409   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,411   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,413   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,416   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,418   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,420   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,422   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,424   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,427   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,432   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,433   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,435   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,437   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,440   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,444   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,446   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,449   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,451   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,453   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,454   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,456   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:30,459   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,460   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,463   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,466   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,469   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,471   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,473   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,476   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,478   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,481   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,484   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,486   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,488   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,490   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-02T11:05:30,494   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T11:05:30,495   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T11:05:30,498   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T11:05:30,500   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T11:05:30,501   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T11:05:30,504   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T11:05:30,508   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-02T11:05:30,510   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T11:05:30,511   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-02T11:05:30,513   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T11:05:30,514   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T11:05:30,515   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T11:05:30,518   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T11:05:30,520   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-02T11:05:30,523   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,524   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,526   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,528   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,530   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,533   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,535   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,537   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,540   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,541   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,544   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,546   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,548   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,551   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,553   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,555   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-02T11:05:30,559   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,560   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,562   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,565   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,567   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,569   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,572   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-02T11:05:30,574   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T11:05:30,575   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T11:05:30,577   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-02T11:05:30,579   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T11:05:30,580   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T11:05:30,582   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-02T11:05:30,584   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T11:05:30,584   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T11:05:30,587   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T11:05:30,589   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T11:05:30,591   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-02T11:05:30,593   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T11:05:30,594   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T11:05:30,597   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T11:05:30,600   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T11:05:30,602   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-02T11:05:30,604   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T11:05:30,605   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T11:05:30,607   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T11:05:30,609   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T11:05:30,611   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-02T11:05:30,613   running egg_info
2023-10-02T11:05:30,618   writing moleculekit.egg-info/PKG-INFO
2023-10-02T11:05:30,621   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-02T11:05:30,622   writing requirements to moleculekit.egg-info/requires.txt
2023-10-02T11:05:30,623   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-02T11:05:30,634   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,635   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,636   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,636   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,637   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,638   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,638   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,639   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,639   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,640   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,640   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,641   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,641   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,641   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,642   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,642   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,643   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,644   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,644   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,645   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,645   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,646   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,646   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,647   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,648   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,648   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,649   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,649   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,650   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,650   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,650   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,651   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,651   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,652   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,652   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,653   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,654   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,654   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,655   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,655   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,656   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,657   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,657   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,658   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,658   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,658   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,659   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,659   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,660   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,660   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,661   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,661   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,662   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,662   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,663   dependency /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-02T11:05:30,663   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:30,664   reading manifest template 'MANIFEST.in'
2023-10-02T11:05:30,869   no previously-included directories found matching 'moleculekit/test-data'
2023-10-02T11:05:30,870   no previously-included directories found matching 'moleculekit/tests'
2023-10-02T11:05:30,871   no previously-included directories found matching 'package'
2023-10-02T11:05:30,872   adding license file 'LICENSE'
2023-10-02T11:05:30,885   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-02T11:05:30,894   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-02T11:05:30,894   !!

2023-10-02T11:05:30,896           ********************************************************************************
2023-10-02T11:05:30,896           ############################
2023-10-02T11:05:30,897           # Package would be ignored #
2023-10-02T11:05:30,897           ############################
2023-10-02T11:05:30,898           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-02T11:05:30,898           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:30,899           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:30,899           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-02T11:05:30,900           to the `packages` configuration field.

2023-10-02T11:05:30,901           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:30,901           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:30,902           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:30,902           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:30,903           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:30,904           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-02T11:05:30,904           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-02T11:05:30,905           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:30,905           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:30,906           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:30,907           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:30,908           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:30,910           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:30,910                 even if it does not contain any `.py` files.
2023-10-02T11:05:30,911                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:30,912                 directory, all directories are treated like packages.
2023-10-02T11:05:30,912           ********************************************************************************

2023-10-02T11:05:30,913   !!
2023-10-02T11:05:30,914     check.warn(importable)
2023-10-02T11:05:30,914   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-02T11:05:30,915   !!

2023-10-02T11:05:30,916           ********************************************************************************
2023-10-02T11:05:30,917           ############################
2023-10-02T11:05:30,917           # Package would be ignored #
2023-10-02T11:05:30,918           ############################
2023-10-02T11:05:30,920           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-02T11:05:30,921           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:30,923           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:30,925           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-02T11:05:30,926           to the `packages` configuration field.

2023-10-02T11:05:30,928           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:30,929           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:30,930           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:30,931           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:30,932           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:30,933           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-02T11:05:30,933           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-02T11:05:30,933           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:30,934           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:30,934           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:30,935           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:30,936           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:30,938           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:30,938                 even if it does not contain any `.py` files.
2023-10-02T11:05:30,938                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:30,939                 directory, all directories are treated like packages.
2023-10-02T11:05:30,939           ********************************************************************************

2023-10-02T11:05:30,940   !!
2023-10-02T11:05:30,941     check.warn(importable)
2023-10-02T11:05:30,941   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-02T11:05:30,942   !!

2023-10-02T11:05:30,943           ********************************************************************************
2023-10-02T11:05:30,943           ############################
2023-10-02T11:05:30,944           # Package would be ignored #
2023-10-02T11:05:30,945           ############################
2023-10-02T11:05:30,945           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-02T11:05:30,947           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:30,957           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:30,961           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-02T11:05:30,961           to the `packages` configuration field.

2023-10-02T11:05:30,962           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:30,963           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:30,963           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:30,964           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:30,965           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:30,966           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-02T11:05:30,967           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-02T11:05:30,967           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:30,968           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:30,968           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:30,970           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:30,971           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:30,973           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:30,973                 even if it does not contain any `.py` files.
2023-10-02T11:05:30,974                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:30,975                 directory, all directories are treated like packages.
2023-10-02T11:05:30,976           ********************************************************************************

2023-10-02T11:05:30,977   !!
2023-10-02T11:05:30,977     check.warn(importable)
2023-10-02T11:05:30,978   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-02T11:05:30,978   !!

2023-10-02T11:05:30,979           ********************************************************************************
2023-10-02T11:05:30,980           ############################
2023-10-02T11:05:30,980           # Package would be ignored #
2023-10-02T11:05:30,981           ############################
2023-10-02T11:05:30,981           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-02T11:05:30,982           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:30,983           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:30,984           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-02T11:05:30,984           to the `packages` configuration field.

2023-10-02T11:05:30,985           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:30,986           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:30,987           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:30,988           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:30,989           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:30,990           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-02T11:05:30,991           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-02T11:05:30,991           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:30,992           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:30,992           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:30,997           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:30,998           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,000           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,000                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,001                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,001                 directory, all directories are treated like packages.
2023-10-02T11:05:31,002           ********************************************************************************

2023-10-02T11:05:31,003   !!
2023-10-02T11:05:31,004     check.warn(importable)
2023-10-02T11:05:31,004   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-02T11:05:31,005   !!

2023-10-02T11:05:31,006           ********************************************************************************
2023-10-02T11:05:31,007           ############################
2023-10-02T11:05:31,008           # Package would be ignored #
2023-10-02T11:05:31,008           ############################
2023-10-02T11:05:31,009           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-02T11:05:31,017           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,023           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,023           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-02T11:05:31,024           to the `packages` configuration field.

2023-10-02T11:05:31,025           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,026           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,026           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,027           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,028           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,029           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-02T11:05:31,029           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-02T11:05:31,029           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,030           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,030           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,031           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,032           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,037           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,043                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,048                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,049                 directory, all directories are treated like packages.
2023-10-02T11:05:31,050           ********************************************************************************

2023-10-02T11:05:31,051   !!
2023-10-02T11:05:31,051     check.warn(importable)
2023-10-02T11:05:31,052   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-02T11:05:31,053   !!

2023-10-02T11:05:31,054           ********************************************************************************
2023-10-02T11:05:31,054           ############################
2023-10-02T11:05:31,055           # Package would be ignored #
2023-10-02T11:05:31,055           ############################
2023-10-02T11:05:31,056           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-02T11:05:31,056           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,058           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,058           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-02T11:05:31,059           to the `packages` configuration field.

2023-10-02T11:05:31,060           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,061           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,061           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,067           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,068           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,069           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-02T11:05:31,070           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-02T11:05:31,071           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,071           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,072           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,073           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,074           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,075           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,076                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,076                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,077                 directory, all directories are treated like packages.
2023-10-02T11:05:31,077           ********************************************************************************

2023-10-02T11:05:31,078   !!
2023-10-02T11:05:31,078     check.warn(importable)
2023-10-02T11:05:31,079   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-02T11:05:31,079   !!

2023-10-02T11:05:31,080           ********************************************************************************
2023-10-02T11:05:31,081           ############################
2023-10-02T11:05:31,081           # Package would be ignored #
2023-10-02T11:05:31,082           ############################
2023-10-02T11:05:31,082           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-02T11:05:31,082           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,083           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,084           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-02T11:05:31,084           to the `packages` configuration field.

2023-10-02T11:05:31,085           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,086           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,087           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,088           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,089           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,091           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-02T11:05:31,091           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-02T11:05:31,092           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,093           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,093           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,094           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,095           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,097           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,098                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,098                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,099                 directory, all directories are treated like packages.
2023-10-02T11:05:31,099           ********************************************************************************

2023-10-02T11:05:31,101   !!
2023-10-02T11:05:31,101     check.warn(importable)
2023-10-02T11:05:31,102   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-02T11:05:31,103   !!

2023-10-02T11:05:31,104           ********************************************************************************
2023-10-02T11:05:31,105           ############################
2023-10-02T11:05:31,105           # Package would be ignored #
2023-10-02T11:05:31,106           ############################
2023-10-02T11:05:31,106           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-02T11:05:31,106           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,107           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,108           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-02T11:05:31,108           to the `packages` configuration field.

2023-10-02T11:05:31,109           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,109           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,110           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,111           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,112           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,112           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-02T11:05:31,113           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-02T11:05:31,113           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,114           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,114           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,115           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,117           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,118           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,119                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,120                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,120                 directory, all directories are treated like packages.
2023-10-02T11:05:31,121           ********************************************************************************

2023-10-02T11:05:31,126   !!
2023-10-02T11:05:31,131     check.warn(importable)
2023-10-02T11:05:31,141   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-02T11:05:31,160   !!

2023-10-02T11:05:31,214           ********************************************************************************
2023-10-02T11:05:31,238           ############################
2023-10-02T11:05:31,255           # Package would be ignored #
2023-10-02T11:05:31,277           ############################
2023-10-02T11:05:31,295           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-02T11:05:31,298           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,299           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,300           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-02T11:05:31,300           to the `packages` configuration field.

2023-10-02T11:05:31,302           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,302           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,303           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,304           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,306           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,307           If you don't want 'moleculekit.share' to be distributed and are
2023-10-02T11:05:31,307           already explicitly excluding 'moleculekit.share' via
2023-10-02T11:05:31,308           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,308           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,309           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,310           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,311           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,313           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,314                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,314                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,315                 directory, all directories are treated like packages.
2023-10-02T11:05:31,315           ********************************************************************************

2023-10-02T11:05:31,317   !!
2023-10-02T11:05:31,317     check.warn(importable)
2023-10-02T11:05:31,318   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-02T11:05:31,318   !!

2023-10-02T11:05:31,319           ********************************************************************************
2023-10-02T11:05:31,320           ############################
2023-10-02T11:05:31,321           # Package would be ignored #
2023-10-02T11:05:31,321           ############################
2023-10-02T11:05:31,322           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-02T11:05:31,323           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,324           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,324           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-02T11:05:31,325           to the `packages` configuration field.

2023-10-02T11:05:31,326           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,326           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,327           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,328           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,330           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,331           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-02T11:05:31,331           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-02T11:05:31,332           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,332           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,333           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,334           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,336           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,337           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,338                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,338                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,339                 directory, all directories are treated like packages.
2023-10-02T11:05:31,339           ********************************************************************************

2023-10-02T11:05:31,340   !!
2023-10-02T11:05:31,341     check.warn(importable)
2023-10-02T11:05:31,341   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-02T11:05:31,342   !!

2023-10-02T11:05:31,342           ********************************************************************************
2023-10-02T11:05:31,343           ############################
2023-10-02T11:05:31,343           # Package would be ignored #
2023-10-02T11:05:31,344           ############################
2023-10-02T11:05:31,344           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-02T11:05:31,344           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,345           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,346           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-02T11:05:31,346           to the `packages` configuration field.

2023-10-02T11:05:31,347           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,348           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,348           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,349           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,350           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,351           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-02T11:05:31,351           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-02T11:05:31,352           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,352           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,353           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,353           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,355           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,356           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,357                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,357                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,358                 directory, all directories are treated like packages.
2023-10-02T11:05:31,358           ********************************************************************************

2023-10-02T11:05:31,359   !!
2023-10-02T11:05:31,360     check.warn(importable)
2023-10-02T11:05:31,360   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-02T11:05:31,361   !!

2023-10-02T11:05:31,362           ********************************************************************************
2023-10-02T11:05:31,363           ############################
2023-10-02T11:05:31,363           # Package would be ignored #
2023-10-02T11:05:31,364           ############################
2023-10-02T11:05:31,364           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-02T11:05:31,365           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,366           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,366           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-02T11:05:31,367           to the `packages` configuration field.

2023-10-02T11:05:31,368           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,368           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,369           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,370           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,370           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,371           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-02T11:05:31,372           already explicitly excluding 'moleculekit.tmalign' via
2023-10-02T11:05:31,372           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,373           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,373           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,374           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,375           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,376           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,377                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,377                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,378                 directory, all directories are treated like packages.
2023-10-02T11:05:31,378           ********************************************************************************

2023-10-02T11:05:31,379   !!
2023-10-02T11:05:31,380     check.warn(importable)
2023-10-02T11:05:31,380   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-02T11:05:31,381   !!

2023-10-02T11:05:31,382           ********************************************************************************
2023-10-02T11:05:31,382           ############################
2023-10-02T11:05:31,382           # Package would be ignored #
2023-10-02T11:05:31,383           ############################
2023-10-02T11:05:31,383           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-02T11:05:31,384           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,385           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,386           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-02T11:05:31,386           to the `packages` configuration field.

2023-10-02T11:05:31,387           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,387           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,388           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,389           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,390           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,391           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-02T11:05:31,391           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-02T11:05:31,392           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,392           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,393           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,394           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,395           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,396           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,397                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,397                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,398                 directory, all directories are treated like packages.
2023-10-02T11:05:31,398           ********************************************************************************

2023-10-02T11:05:31,399   !!
2023-10-02T11:05:31,399     check.warn(importable)
2023-10-02T11:05:31,400   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-02T11:05:31,400   !!

2023-10-02T11:05:31,401           ********************************************************************************
2023-10-02T11:05:31,401           ############################
2023-10-02T11:05:31,401           # Package would be ignored #
2023-10-02T11:05:31,402           ############################
2023-10-02T11:05:31,402           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-02T11:05:31,403           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,404           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,404           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-02T11:05:31,405           to the `packages` configuration field.

2023-10-02T11:05:31,405           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,406           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,406           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,408           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,409           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,409           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-02T11:05:31,410           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-02T11:05:31,410           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,411           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,411           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,412           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,413           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,415           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,415                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,416                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,416                 directory, all directories are treated like packages.
2023-10-02T11:05:31,417           ********************************************************************************

2023-10-02T11:05:31,418   !!
2023-10-02T11:05:31,419     check.warn(importable)
2023-10-02T11:05:31,420   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-02T11:05:31,420   !!

2023-10-02T11:05:31,421           ********************************************************************************
2023-10-02T11:05:31,422           ############################
2023-10-02T11:05:31,422           # Package would be ignored #
2023-10-02T11:05:31,423           ############################
2023-10-02T11:05:31,424           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-02T11:05:31,424           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,425           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,425           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-02T11:05:31,426           to the `packages` configuration field.

2023-10-02T11:05:31,426           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,427           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,427           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,428           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,429           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,430           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-02T11:05:31,430           already explicitly excluding 'moleculekit.wrapping' via
2023-10-02T11:05:31,430           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,431           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,431           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,432           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,433           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,435           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,435                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,436                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,436                 directory, all directories are treated like packages.
2023-10-02T11:05:31,437           ********************************************************************************

2023-10-02T11:05:31,438   !!
2023-10-02T11:05:31,438     check.warn(importable)
2023-10-02T11:05:31,439   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-02T11:05:31,439   !!

2023-10-02T11:05:31,440           ********************************************************************************
2023-10-02T11:05:31,441           ############################
2023-10-02T11:05:31,441           # Package would be ignored #
2023-10-02T11:05:31,442           ############################
2023-10-02T11:05:31,442           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-02T11:05:31,443           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,444           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,444           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-02T11:05:31,445           to the `packages` configuration field.

2023-10-02T11:05:31,446           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,446           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,447           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,448           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,449           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,450           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-02T11:05:31,451           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-02T11:05:31,451           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,452           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,452           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,453           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,454           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,455           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,456                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,456                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,456                 directory, all directories are treated like packages.
2023-10-02T11:05:31,457           ********************************************************************************

2023-10-02T11:05:31,458   !!
2023-10-02T11:05:31,458     check.warn(importable)
2023-10-02T11:05:31,459   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-02T11:05:31,459   !!

2023-10-02T11:05:31,460           ********************************************************************************
2023-10-02T11:05:31,461           ############################
2023-10-02T11:05:31,461           # Package would be ignored #
2023-10-02T11:05:31,461           ############################
2023-10-02T11:05:31,462           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-02T11:05:31,462           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,464           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,464           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-02T11:05:31,464           to the `packages` configuration field.

2023-10-02T11:05:31,465           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,466           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,467           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,468           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,468           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,469           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-02T11:05:31,470           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-02T11:05:31,470           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,471           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,471           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,472           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,474           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,475           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,476                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,476                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,476                 directory, all directories are treated like packages.
2023-10-02T11:05:31,477           ********************************************************************************

2023-10-02T11:05:31,478   !!
2023-10-02T11:05:31,479     check.warn(importable)
2023-10-02T11:05:31,479   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-02T11:05:31,480   !!

2023-10-02T11:05:31,481           ********************************************************************************
2023-10-02T11:05:31,481           ############################
2023-10-02T11:05:31,482           # Package would be ignored #
2023-10-02T11:05:31,482           ############################
2023-10-02T11:05:31,483           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-02T11:05:31,483           but it is absent from setuptools' `packages` configuration.

2023-10-02T11:05:31,484           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-02T11:05:31,484           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-02T11:05:31,485           to the `packages` configuration field.

2023-10-02T11:05:31,486           Alternatively, you can also rely on setuptools' discovery methods
2023-10-02T11:05:31,487           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-02T11:05:31,487           instead of `find_packages(...)`/`find:`).

2023-10-02T11:05:31,488           You can read more about "package discovery" on setuptools documentation page:

2023-10-02T11:05:31,489           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-02T11:05:31,490           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-02T11:05:31,491           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-02T11:05:31,491           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-02T11:05:31,492           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-02T11:05:31,492           combination with a more fine grained `package-data` configuration.

2023-10-02T11:05:31,493           You can read more about "package data files" on setuptools documentation page:

2023-10-02T11:05:31,495           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-02T11:05:31,496           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-02T11:05:31,497                 even if it does not contain any `.py` files.
2023-10-02T11:05:31,497                 On the other hand, currently there is no concept of package data
2023-10-02T11:05:31,498                 directory, all directories are treated like packages.
2023-10-02T11:05:31,498           ********************************************************************************

2023-10-02T11:05:31,500   !!
2023-10-02T11:05:31,500     check.warn(importable)
2023-10-02T11:05:31,501   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:31,501   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:31,502   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T11:05:31,502   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T11:05:31,503   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T11:05:31,503   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T11:05:31,504   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T11:05:31,505   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T11:05:31,505   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T11:05:31,506   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T11:05:31,506   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T11:05:31,507   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T11:05:31,507   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T11:05:31,508   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T11:05:31,508   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T11:05:31,509   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T11:05:31,509   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T11:05:31,510   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-02T11:05:31,510   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T11:05:31,511   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-02T11:05:31,511   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-10-02T11:05:31,512   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,512   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,512   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,513   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,513   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,514   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,514   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,515   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,515   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,516   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,516   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,517   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,517   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,518   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,518   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,519   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,519   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,520   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,520   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,521   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,522   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,522   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,522   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,523   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,523   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,524   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,524   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,525   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,525   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,525   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,526   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,526   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,527   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,527   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,528   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,528   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,529   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,529   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,530   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,530   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,531   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,531   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,532   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,532   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,533   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,533   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,534   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,535   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,535   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,535   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,536   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,536   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,536   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,537   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,537   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,538   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,538   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,539   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,539   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,540   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,540   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,540   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,541   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,541   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,542   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,542   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,543   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,543   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,544   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,544   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,545   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,545   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,546   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,546   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,547   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,548   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,548   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,549   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,549   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,550   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,550   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,551   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,551   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,551   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,552   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,552   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,553   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,553   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,554   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,554   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,555   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,556   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,558   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,560   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,563   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,565   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,567   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,569   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,571   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,573   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,575   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,577   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,579   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,581   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,583   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,585   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,587   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,589   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,591   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,593   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,595   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,597   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,599   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,601   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,603   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,605   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,607   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,609   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,611   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,613   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,616   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,618   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,620   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,622   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,624   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,626   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,628   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,630   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,633   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,635   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,637   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,639   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,641   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,643   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,645   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,647   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,649   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,651   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,653   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,655   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,658   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,660   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,662   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,664   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,666   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,669   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,671   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,673   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,675   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,677   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,679   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,681   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,684   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,686   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,688   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,690   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,692   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,694   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,696   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,698   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,701   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,703   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,705   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,708   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,710   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,712   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,714   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,715   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,718   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,719   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,722   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,723   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,725   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,727   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,729   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,731   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-02T11:05:31,733   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T11:05:31,734   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T11:05:31,762   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T11:05:31,764   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T11:05:31,766   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T11:05:31,767   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-02T11:05:31,769   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T11:05:31,770   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T11:05:31,777   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T11:05:31,778   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T11:05:31,806   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T11:05:31,808   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T11:05:31,809   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T11:05:31,828   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T11:05:31,830   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T11:05:31,831   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T11:05:31,832   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T11:05:31,835   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T11:05:31,837   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-02T11:05:31,839   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T11:05:31,840   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T11:05:31,844   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T11:05:31,845   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T11:05:31,864   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T11:05:31,865   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T11:05:31,885   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T11:05:31,888   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T11:05:31,889   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T11:05:31,911   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T11:05:31,914   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T11:05:31,915   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T11:05:31,938   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T11:05:31,940   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T11:05:31,942   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T11:05:31,962   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T11:05:31,972   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T11:05:31,973   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.17'
2023-10-02T11:05:31,973   running build_ext
2023-10-02T11:05:31,983   building 'moleculekit.interactions.hbonds' extension
2023-10-02T11:05:31,984   creating build/temp.linux-armv7l-cpython-311
2023-10-02T11:05:31,985   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-10-02T11:05:31,987   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-02T11:05:31,988   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-02T11:05:31,989   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-02T11:05:32,308   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:05:32,308                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:05:32,309                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:05:32,309                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-02T11:05:32,310   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:05:32,310      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:05:32,311         |  ^~~~~~~
2023-10-02T11:06:02,690   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:06:02,980   building 'moleculekit.interactions.pipi' extension
2023-10-02T11:06:02,981   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-02T11:06:02,982   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-10-02T11:06:03,294   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:06:03,294                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:06:03,295                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:06:03,295                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-02T11:06:03,296   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:06:03,297      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:06:03,297         |  ^~~~~~~
2023-10-02T11:06:35,912   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:06:36,197   building 'moleculekit.interactions.cationpi' extension
2023-10-02T11:06:36,197   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-02T11:06:36,198   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-02T11:06:36,513   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:06:36,514                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:06:36,515                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:06:36,515                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-02T11:06:36,516   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:06:36,516      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:06:36,516         |  ^~~~~~~
2023-10-02T11:07:08,865   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:07:09,151   building 'moleculekit.interactions.sigmahole' extension
2023-10-02T11:07:09,152   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-02T11:07:09,153   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-02T11:07:09,719   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:07:09,719                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:07:09,720                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:07:09,721                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-02T11:07:09,721   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:07:09,722      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:07:09,723         |  ^~~~~~~
2023-10-02T11:07:42,003   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:07:42,294   building 'moleculekit.wrapping' extension
2023-10-02T11:07:42,295   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-02T11:07:42,296   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-10-02T11:07:42,602   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:07:42,603                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:07:42,603                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:07:42,604                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-02T11:07:42,604   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:07:42,604      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:07:42,605         |  ^~~~~~~
2023-10-02T11:08:10,783   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:08:10,974   building 'moleculekit.bondguesser_utils' extension
2023-10-02T11:08:10,974   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-02T11:08:10,975   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-02T11:08:11,274   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:08:11,275                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:08:11,275                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:08:11,276                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-02T11:08:11,276   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:08:11,277      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:08:11,278         |  ^~~~~~~
2023-10-02T11:08:13,557   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-02T11:08:13,558   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T11:08:13,558   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-02T11:08:13,559         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T11:08:13,560   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T11:08:13,560   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-02T11:08:13,561         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T11:08:13,562   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-02T11:08:13,563   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-02T11:08:13,564         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-02T11:08:13,564   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,565   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,565         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,566   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,566   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T11:08:13,567         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,568   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,569   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,569         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,570   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,571   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,572         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,572   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,573   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T11:08:13,574         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,574   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,575   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,576         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,577   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,577   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,578         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,579   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,579   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T11:08:13,580         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,581   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,582   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,582         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,583   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,584   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,585         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,585   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,586   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,587         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,588   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,588         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,589   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,589   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,590         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,591   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T11:08:13,592         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,593   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,593         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,594   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,595   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-02T11:08:13,596         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,596   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,597   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,598         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,599   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,599   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-02T11:08:13,600         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,601   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,601   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,602         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,603   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-02T11:08:13,604   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-02T11:08:13,604         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,605   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-02T11:08:13,606   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T11:08:13,607   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-02T11:08:13,607         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-02T11:08:13,608   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T11:08:13,608   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-02T11:08:13,609         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T11:08:39,920   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:08:40,185   building 'moleculekit.atomselect_utils' extension
2023-10-02T11:08:40,185   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-02T11:08:40,186   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-02T11:08:40,490   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:08:40,490                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:08:40,491                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:08:40,491                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-02T11:08:40,492   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:08:40,493      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:08:40,493         |  ^~~~~~~
2023-10-02T11:08:43,891   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-02T11:08:43,892   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T11:08:43,892   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-02T11:08:43,893         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-02T11:08:43,899   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T11:08:43,899   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T11:08:43,900   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T11:08:43,901         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T11:08:43,906   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-02T11:08:43,907   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-02T11:08:43,908   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-02T11:08:43,908         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T11:09:18,491   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:09:18,817   building 'moleculekit.distance_utils' extension
2023-10-02T11:09:18,817   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-02T11:09:18,818   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-10-02T11:09:19,122   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:09:19,123                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:09:19,123                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:09:19,124                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-02T11:09:19,125   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:09:19,125      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:09:19,126         |  ^~~~~~~
2023-10-02T11:09:55,940   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:09:56,223   building 'moleculekit.occupancy_utils' extension
2023-10-02T11:09:56,224   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-02T11:09:56,224   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-02T11:09:56,527   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:09:56,527                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:09:56,528                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:09:56,528                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-02T11:09:56,529   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:09:56,530      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:09:56,530         |  ^~~~~~~
2023-10-02T11:10:23,723   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:10:23,909   building 'moleculekit.xtc' extension
2023-10-02T11:10:23,910   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-02T11:10:23,910   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-02T11:10:23,911   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-10-02T11:10:24,549   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,550      66 |         "OK",
2023-10-02T11:10:24,551         |         ^~~~
2023-10-02T11:10:24,551   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,552      67 |         "Header",
2023-10-02T11:10:24,553         |         ^~~~~~~~
2023-10-02T11:10:24,553   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,554      68 |         "String",
2023-10-02T11:10:24,555         |         ^~~~~~~~
2023-10-02T11:10:24,556   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,556      69 |         "Double",
2023-10-02T11:10:24,557         |         ^~~~~~~~
2023-10-02T11:10:24,557   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,558      70 |         "Integer",
2023-10-02T11:10:24,558         |         ^~~~~~~~~
2023-10-02T11:10:24,559   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,560      71 |         "Float",
2023-10-02T11:10:24,560         |         ^~~~~~~
2023-10-02T11:10:24,561   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,561      72 |         "Unsigned integer",
2023-10-02T11:10:24,562         |         ^~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,562   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,563      73 |         "Compressed 3D coordinate",
2023-10-02T11:10:24,563         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,564   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,564      74 |         "Closing file",
2023-10-02T11:10:24,565         |         ^~~~~~~~~~~~~~
2023-10-02T11:10:24,565   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,566      75 |         "Magic number",
2023-10-02T11:10:24,567         |         ^~~~~~~~~~~~~~
2023-10-02T11:10:24,568   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,568      76 |         "Not enough memory",
2023-10-02T11:10:24,569         |         ^~~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,570   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,570      77 |         "End of file",
2023-10-02T11:10:24,571         |         ^~~~~~~~~~~~~
2023-10-02T11:10:24,572   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-02T11:10:24,572      78 |         "File not found"
2023-10-02T11:10:24,573         |         ^~~~~~~~~~~~~~~~
2023-10-02T11:10:24,574   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-02T11:10:24,575   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,575     459 |     while (size >= num && num_of_bits < 32)
2023-10-02T11:10:24,576         |            ~~~~~^~~~~~
2023-10-02T11:10:24,576   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-02T11:10:24,577   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,578     505 |     while (bytes[num_of_bytes] >= num)
2023-10-02T11:10:24,578         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-02T11:10:24,579   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-02T11:10:24,580   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,580     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-02T11:10:24,581         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,582   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,583     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-10-02T11:10:24,583         |                             ~~^~~~~~~~~~~~~~
2023-10-02T11:10:24,584   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,584     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-10-02T11:10:24,584         |                             ~~^~~~~~~~~~~~~~~~
2023-10-02T11:10:24,585   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-02T11:10:24,585   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,586     664 |                 if (lastbits < num_of_bits)
2023-10-02T11:10:24,586         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-10-02T11:10:24,587   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-02T11:10:24,588   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,588     785 |         if(size3>xfp->buf1size)
2023-10-02T11:10:24,589         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T11:10:24,589   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,590     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T11:10:24,590         |                          ^
2023-10-02T11:10:24,591   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,592     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,592         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,593   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,594     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,594         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,595   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,596     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,596         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,597   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,598     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,598         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,599   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,600     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,600         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,601   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,602     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-02T11:10:24,603         |                                    ~~~~~~~~~^~~~~~~~
2023-10-02T11:10:24,603   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,604     756 |         int smallidx,  minidx, maxidx;
2023-10-02T11:10:24,604         |                        ^~~~~~
2023-10-02T11:10:24,605   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,605     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T11:10:24,605         |                                ^~~~~~
2023-10-02T11:10:24,606   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T11:10:24,606     763 |         int errval=1;
2023-10-02T11:10:24,607         |             ^~~~~~
2023-10-02T11:10:24,607   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-02T11:10:24,608   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,609    1011 |         if(size3>xfp->buf1size)
2023-10-02T11:10:24,609         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T11:10:24,610   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,610    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T11:10:24,611         |                                 ~~~~~~~~^~~~~~~
2023-10-02T11:10:24,611   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,612    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T11:10:24,613         |                           ~~~~~~~~^~~~~~~
2023-10-02T11:10:24,613   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,614    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-02T11:10:24,615         |                           ~~~~~~~~^~~~~~~
2023-10-02T11:10:24,615   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,616    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-02T11:10:24,617         |                         ^
2023-10-02T11:10:24,617   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,618    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T11:10:24,619         |                          ^
2023-10-02T11:10:24,619   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,620    1275 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T11:10:24,621         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,621   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,622    1001 |         int errval;
2023-10-02T11:10:24,623         |             ^~~~~~
2023-10-02T11:10:24,623   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-02T11:10:24,624   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,625    1316 |         if(size3>xfp->buf1size)
2023-10-02T11:10:24,626         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T11:10:24,626   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,626    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T11:10:24,627         |                          ^
2023-10-02T11:10:24,628   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,628    1289 |         int smallidx,  maxidx, minidx;
2023-10-02T11:10:24,628         |                                ^~~~~~
2023-10-02T11:10:24,629   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,629    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-02T11:10:24,630         |                                ^~~~~~
2023-10-02T11:10:24,630   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-02T11:10:24,631    1297 |         int errval=1;
2023-10-02T11:10:24,631         |             ^~~~~~
2023-10-02T11:10:24,632   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-02T11:10:24,632   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,633    1513 |         if(size3>xfp->buf1size) {
2023-10-02T11:10:24,633         |            ~~~~~^~~~~~~~~~~~~~
2023-10-02T11:10:24,634   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,635    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-02T11:10:24,635         |                         ^
2023-10-02T11:10:24,636   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-02T11:10:24,637    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-02T11:10:24,638         |                          ^
2023-10-02T11:10:24,638   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-02T11:10:24,639    1743 |         if(tmp==(unsigned int)buf2[0])
2023-10-02T11:10:24,640         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-02T11:10:24,640   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-02T11:10:24,641    1504 |         int errval=1;
2023-10-02T11:10:24,642         |             ^~~~~~
2023-10-02T11:10:27,498   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-02T11:10:27,767   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-10-02T11:10:28,567   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-02T11:10:28,568   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T11:10:28,568     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-02T11:10:28,569         |             ^~~
2023-10-02T11:10:28,576   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-02T11:10:28,577   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-02T11:10:28,577     418 |         int nf3 = nframes * 3;
2023-10-02T11:10:28,578         |             ^~~
2023-10-02T11:10:28,583   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-02T11:10:28,583   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-02T11:10:28,584     491 |         int reading_index = 0;
2023-10-02T11:10:28,584         |             ^~~~~~~~~~~~~
2023-10-02T11:10:28,585   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-02T11:10:28,586     492 |         int writing_index = 0;
2023-10-02T11:10:28,586         |             ^~~~~~~~~~~~~
2023-10-02T11:10:29,467   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-10-02T11:10:29,772   In file included from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-02T11:10:29,773                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-02T11:10:29,774                    from /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-02T11:10:29,774                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-02T11:10:29,775   /tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-02T11:10:29,776      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-02T11:10:29,776         |  ^~~~~~~
2023-10-02T11:10:53,746   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:10:54,289   building 'moleculekit.tmalign' extension
2023-10-02T11:10:54,290   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-02T11:10:54,291   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-02T11:10:54,292   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-10-02T11:11:29,790   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ygl4rhu4/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-10-02T11:11:52,467   In file included from /usr/include/c++/12/vector:70,
2023-10-02T11:11:52,468                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-02T11:11:52,469   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-02T11:11:52,469   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-02T11:11:52,470     439 |       vector<_Tp, _Alloc>::
2023-10-02T11:11:52,470         |       ^~~~~~~~~~~~~~~~~~~
2023-10-02T11:11:53,277   In file included from /usr/include/c++/12/vector:64:
2023-10-02T11:11:53,278   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T11:11:53,278       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20812:32,
2023-10-02T11:11:53,279       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T11:11:53,279   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T11:11:53,280    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T11:11:53,281         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T11:11:53,282   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T11:11:53,282       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20826:33,
2023-10-02T11:11:53,283       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T11:11:53,284   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T11:11:53,284    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T11:11:53,285         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T11:11:53,285   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-02T11:11:53,286       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20911:34,
2023-10-02T11:11:53,287       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20297:52:
2023-10-02T11:11:53,287   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-02T11:11:53,288    1287 |           _M_realloc_insert(end(), __x);
2023-10-02T11:11:53,289         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-02T11:11:55,667   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-10-02T11:11:56,060   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-02T11:11:56,060   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.7.17'
2023-10-02T11:11:56,061   installing to build/bdist.linux-armv7l/wheel
2023-10-02T11:11:56,061   running install
2023-10-02T11:11:56,084   running install_lib
2023-10-02T11:11:56,090   creating build/bdist.linux-armv7l
2023-10-02T11:11:56,090   creating build/bdist.linux-armv7l/wheel
2023-10-02T11:11:56,092   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,096   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,124   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,169   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,171   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,174   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,177   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,181   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,183   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,186   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,188   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T11:11:56,189   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T11:11:56,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-02T11:11:56,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,199   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,202   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,205   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-02T11:11:56,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,227   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,228   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,249   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T11:11:56,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T11:11:56,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-02T11:11:56,271   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T11:11:56,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T11:11:56,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-02T11:11:56,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,316   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T11:11:56,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T11:11:56,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-02T11:11:56,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,344   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T11:11:56,345   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T11:11:56,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-02T11:11:56,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,384   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-02T11:11:56,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,415   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T11:11:56,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T11:11:56,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-02T11:11:56,437   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T11:11:56,438   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T11:11:56,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T11:11:56,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-02T11:11:56,446   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,448   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,457   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T11:11:56,459   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T11:11:56,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T11:11:56,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T11:11:56,466   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-02T11:11:56,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T11:11:56,487   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T11:11:56,489   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T11:11:56,490   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T11:11:56,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T11:11:56,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-02T11:11:56,496   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-02T11:11:56,499   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,504   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,524   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T11:11:56,525   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T11:11:56,526   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T11:11:56,529   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-02T11:11:56,531   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T11:11:56,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T11:11:56,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T11:11:56,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T11:11:56,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-02T11:11:56,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-02T11:11:56,541   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T11:11:56,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T11:11:56,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T11:11:56,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T11:11:56,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-02T11:11:56,551   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T11:11:56,552   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T11:11:56,554   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-02T11:11:56,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,599   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T11:11:56,600   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T11:11:56,625   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-02T11:11:56,628   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,652   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T11:11:56,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T11:11:56,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T11:11:56,659   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T11:11:56,662   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-02T11:11:56,665   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T11:11:56,666   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T11:11:56,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-02T11:11:56,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,701   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T11:11:56,702   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T11:11:56,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-02T11:11:56,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T11:11:56,711   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T11:11:56,712   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-02T11:11:56,714   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T11:11:56,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-02T11:11:56,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,745   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,748   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T11:11:56,749   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T11:11:56,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-02T11:11:56,771   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:56,810   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T11:11:56,812   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T11:11:56,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-02T11:11:56,816   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-02T11:11:56,820   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,821   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,847   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,876   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,878   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,880   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,889   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,912   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,913   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,915   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,918   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,920   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,925   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,927   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,929   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,943   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,948   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,950   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,952   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,956   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,958   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,970   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,975   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,983   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,985   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,988   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,994   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,996   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:56,998   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,000   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,002   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,007   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,008   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,013   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,015   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,022   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,026   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,028   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,037   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,039   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,049   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,051   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,055   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,058   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,060   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,067   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,071   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,073   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,082   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,084   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,085   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,087   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,096   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,101   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,103   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,106   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,108   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,110   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,112   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,114   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,116   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,118   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,120   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,127   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,129   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,130   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,136   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,141   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,143   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,145   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,147   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-02T11:11:57,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T11:11:57,150   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T11:11:57,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-02T11:11:57,371   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,379   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,384   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,390   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,393   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,395   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,404   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-02T11:11:57,407   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,408   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T11:11:57,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T11:11:57,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T11:11:57,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T11:11:57,415   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-02T11:11:57,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-02T11:11:57,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-02T11:11:57,433   running install_egg_info
2023-10-02T11:11:57,439   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.17-py3.11.egg-info
2023-10-02T11:11:57,451   running install_scripts
2023-10-02T11:11:57,504   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.17.dist-info/WHEEL
2023-10-02T11:11:57,507   creating '/tmp/pip-wheel-mlzshh12/.tmp-nm0azq8c/moleculekit-1.7.17-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-02T11:11:57,510   adding 'moleculekit/__init__.py'
2023-10-02T11:11:57,511   adding 'moleculekit/_version.py'
2023-10-02T11:11:57,513   adding 'moleculekit/align.py'
2023-10-02T11:11:57,872   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:57,887   adding 'moleculekit/bondguesser.py'
2023-10-02T11:11:58,132   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:58,142   adding 'moleculekit/config.py'
2023-10-02T11:11:58,143   adding 'moleculekit/dihedral.py'
2023-10-02T11:11:58,144   adding 'moleculekit/distance.py'
2023-10-02T11:11:58,443   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:58,455   adding 'moleculekit/home.py'
2023-10-02T11:11:58,457   adding 'moleculekit/logging.ini'
2023-10-02T11:11:58,470   adding 'moleculekit/molecule.py'
2023-10-02T11:11:58,697   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:58,707   adding 'moleculekit/opm.py'
2023-10-02T11:11:58,709   adding 'moleculekit/periodictable.py'
2023-10-02T11:11:58,710   adding 'moleculekit/pymolgraphics.py'
2023-10-02T11:11:58,712   adding 'moleculekit/rcsb.py'
2023-10-02T11:11:58,713   adding 'moleculekit/rdkitintegration.py'
2023-10-02T11:11:58,725   adding 'moleculekit/readers.py'
2023-10-02T11:11:59,320   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:59,375   adding 'moleculekit/util.py'
2023-10-02T11:11:59,381   adding 'moleculekit/version.py'
2023-10-02T11:11:59,382   adding 'moleculekit/viewer.py'
2023-10-02T11:11:59,384   adding 'moleculekit/vmd_wrapper'
2023-10-02T11:11:59,387   adding 'moleculekit/vmdgraphics.py'
2023-10-02T11:11:59,389   adding 'moleculekit/vmdviewer.py'
2023-10-02T11:11:59,625   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:59,639   adding 'moleculekit/writers.py'
2023-10-02T11:11:59,898   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:11:59,909   adding 'moleculekit/atomselect/__init__.py'
2023-10-02T11:11:59,910   adding 'moleculekit/atomselect/analyze.py'
2023-10-02T11:11:59,912   adding 'moleculekit/atomselect/atomselect.py'
2023-10-02T11:11:59,914   adding 'moleculekit/atomselect/languageparser.py'
2023-10-02T11:12:00,018   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-02T11:12:00,031   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-02T11:12:00,121   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-02T11:12:00,132   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-02T11:12:00,230   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-02T11:12:00,242   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-02T11:12:00,244   adding 'moleculekit/interactions/__init__.py'
2023-10-02T11:12:00,523   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:12:00,791   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:12:00,803   adding 'moleculekit/interactions/interactions.py'
2023-10-02T11:12:01,079   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:12:01,365   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-10-02T11:12:01,466   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-02T11:12:01,477   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-02T11:12:01,567   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-02T11:12:01,578   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-02T11:12:01,669   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-02T11:12:01,680   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-02T11:12:01,770   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-02T11:12:01,781   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-02T11:12:01,867   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-02T11:12:01,877   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-02T11:12:01,879   adding 'moleculekit/pdbx/__init__.py'
2023-10-02T11:12:01,882   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-02T11:12:01,885   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-02T11:12:01,887   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-02T11:12:01,888   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-02T11:12:01,890   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-02T11:12:01,891   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-02T11:12:01,893   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-02T11:12:01,894   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-02T11:12:01,896   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-02T11:12:01,897   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-02T11:12:01,898   adding 'moleculekit/ply/__init__.py'
2023-10-02T11:12:01,902   adding 'moleculekit/ply/lex.py'
2023-10-02T11:12:01,913   adding 'moleculekit/ply/yacc.py'
2023-10-02T11:12:01,916   adding 'moleculekit/projections/__init__.py'
2023-10-02T11:12:01,918   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-02T11:12:01,921   adding 'moleculekit/projections/metricdihedral.py'
2023-10-02T11:12:01,925   adding 'moleculekit/projections/metricdistance.py'
2023-10-02T11:12:01,927   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-02T11:12:01,928   adding 'moleculekit/projections/metricgyration.py'
2023-10-02T11:12:01,932   adding 'moleculekit/projections/metricplumed2.py'
2023-10-02T11:12:01,934   adding 'moleculekit/projections/metricrmsd.py'
2023-10-02T11:12:01,936   adding 'moleculekit/projections/metricsasa.py'
2023-10-02T11:12:01,938   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-02T11:12:01,939   adding 'moleculekit/projections/metricshell.py'
2023-10-02T11:12:01,941   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-02T11:12:01,943   adding 'moleculekit/projections/metrictmscore.py'
2023-10-02T11:12:01,944   adding 'moleculekit/projections/projection.py'
2023-10-02T11:12:01,945   adding 'moleculekit/projections/util.py'
2023-10-02T11:12:01,948   adding 'moleculekit/share/ALA.cif'
2023-10-02T11:12:01,949   adding 'moleculekit/share/backbone.cif'
2023-10-02T11:12:03,244   adding 'moleculekit/share/opm_sequences.json'
2023-10-02T11:12:03,355   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-02T11:12:03,361   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-02T11:12:03,363   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-02T11:12:03,365   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-02T11:12:03,366   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-02T11:12:03,368   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-02T11:12:03,369   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-02T11:12:03,371   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-02T11:12:03,373   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-02T11:12:03,374   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-02T11:12:03,376   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-02T11:12:03,378   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-02T11:12:03,380   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-02T11:12:03,381   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-02T11:12:03,383   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-02T11:12:03,385   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-02T11:12:03,386   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-02T11:12:03,388   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-02T11:12:03,390   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-02T11:12:03,392   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-02T11:12:03,394   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-02T11:12:03,396   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-02T11:12:03,398   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-02T11:12:03,399   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-02T11:12:03,401   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-02T11:12:03,402   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-02T11:12:03,403   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-02T11:12:03,405   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-02T11:12:03,406   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-02T11:12:03,407   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-02T11:12:03,409   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-02T11:12:03,410   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-02T11:12:03,412   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-02T11:12:03,413   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-02T11:12:03,415   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-02T11:12:03,416   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-02T11:12:03,418   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-02T11:12:03,419   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-02T11:12:03,421   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-02T11:12:03,422   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-02T11:12:03,424   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-02T11:12:03,425   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-02T11:12:03,427   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-02T11:12:03,428   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-02T11:12:03,429   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-02T11:12:03,431   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-02T11:12:03,432   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-02T11:12:03,434   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-02T11:12:03,435   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-02T11:12:03,437   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-02T11:12:03,438   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-02T11:12:03,440   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-02T11:12:03,441   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-02T11:12:03,442   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-02T11:12:03,444   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-02T11:12:03,445   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-02T11:12:03,446   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-02T11:12:03,448   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-02T11:12:03,450   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-02T11:12:03,451   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-02T11:12:03,453   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-02T11:12:03,454   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-02T11:12:03,456   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-02T11:12:03,457   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-02T11:12:03,459   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-02T11:12:03,460   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-02T11:12:03,462   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-02T11:12:03,463   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-02T11:12:03,465   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-02T11:12:03,466   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-02T11:12:03,468   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-02T11:12:03,469   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-02T11:12:03,471   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-02T11:12:03,473   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-02T11:12:03,475   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-02T11:12:03,476   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-02T11:12:03,478   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-02T11:12:03,480   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-02T11:12:03,481   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-02T11:12:03,482   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-02T11:12:03,483   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-02T11:12:03,485   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-02T11:12:03,486   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-02T11:12:03,488   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-02T11:12:03,489   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-02T11:12:03,490   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-02T11:12:03,492   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-02T11:12:03,493   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-02T11:12:03,495   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-02T11:12:03,496   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-02T11:12:03,498   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-02T11:12:03,500   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-02T11:12:03,501   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-02T11:12:03,503   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-02T11:12:03,504   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-02T11:12:03,505   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-02T11:12:03,507   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-02T11:12:03,508   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-02T11:12:03,509   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-02T11:12:03,512   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-02T11:12:03,513   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-02T11:12:03,515   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-02T11:12:03,516   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-02T11:12:03,518   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-02T11:12:03,519   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-02T11:12:03,521   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-02T11:12:03,522   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-02T11:12:03,524   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-02T11:12:03,525   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-02T11:12:03,527   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-02T11:12:03,528   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-02T11:12:03,530   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-02T11:12:03,531   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-02T11:12:03,533   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-02T11:12:03,534   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-02T11:12:03,536   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-02T11:12:03,537   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-02T11:12:03,539   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-02T11:12:03,541   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-02T11:12:03,543   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-02T11:12:03,544   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-02T11:12:03,546   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-02T11:12:03,548   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-02T11:12:03,550   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-02T11:12:03,551   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-02T11:12:03,553   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-02T11:12:03,554   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-02T11:12:03,556   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-02T11:12:03,557   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-02T11:12:03,559   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-02T11:12:03,560   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-02T11:12:03,562   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-02T11:12:03,563   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-02T11:12:03,565   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-02T11:12:03,566   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-02T11:12:03,567   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-02T11:12:03,569   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-02T11:12:03,570   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-02T11:12:03,572   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-02T11:12:03,573   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-02T11:12:03,574   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-02T11:12:03,576   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-02T11:12:03,577   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-02T11:12:03,579   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-02T11:12:03,580   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-02T11:12:03,582   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-02T11:12:03,583   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-02T11:12:03,585   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-02T11:12:03,586   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-02T11:12:03,588   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-02T11:12:03,589   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-02T11:12:03,591   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-02T11:12:03,592   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-02T11:12:03,594   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-02T11:12:03,596   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-02T11:12:03,597   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-02T11:12:03,599   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-02T11:12:03,600   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-02T11:12:03,602   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-02T11:12:03,603   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-02T11:12:03,605   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-02T11:12:03,606   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-02T11:12:03,608   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-02T11:12:03,609   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-02T11:12:03,610   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-02T11:12:03,612   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-02T11:12:03,613   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-02T11:12:03,615   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-02T11:12:03,616   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-02T11:12:03,617   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-02T11:12:03,619   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-02T11:12:03,620   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-02T11:12:03,622   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-02T11:12:03,624   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-02T11:12:03,631   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-02T11:12:03,636   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-02T11:12:03,638   adding 'moleculekit/smallmol/__init__.py'
2023-10-02T11:12:03,644   adding 'moleculekit/smallmol/smallmol.py'
2023-10-02T11:12:03,646   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-02T11:12:03,648   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-02T11:12:03,650   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-02T11:12:03,653   adding 'moleculekit/smallmol/util.py'
2023-10-02T11:12:03,655   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-02T11:12:03,657   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-02T11:12:03,659   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-02T11:12:03,660   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-02T11:12:03,750   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-02T11:12:03,760   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-02T11:12:03,762   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-02T11:12:03,764   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-02T11:12:03,782   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-02T11:12:03,786   adding 'moleculekit/tools/__init__.py'
2023-10-02T11:12:03,788   adding 'moleculekit/tools/atomtyper.py'
2023-10-02T11:12:03,791   adding 'moleculekit/tools/autosegment.py'
2023-10-02T11:12:03,793   adding 'moleculekit/tools/crystalpacking.py'
2023-10-02T11:12:03,796   adding 'moleculekit/tools/detect.py'
2023-10-02T11:12:03,798   adding 'moleculekit/tools/docking.py'
2023-10-02T11:12:03,800   adding 'moleculekit/tools/graphalignment.py'
2023-10-02T11:12:03,802   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-02T11:12:03,804   adding 'moleculekit/tools/moleculechecks.py'
2023-10-02T11:12:03,810   adding 'moleculekit/tools/preparation.py'
2023-10-02T11:12:03,813   adding 'moleculekit/tools/preparation_customres.py'
2023-10-02T11:12:03,815   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-02T11:12:03,819   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-02T11:12:03,821   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-02T11:12:03,822   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-02T11:12:03,910   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-02T11:12:03,920   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-02T11:12:04,009   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-02T11:12:04,020   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-02T11:12:04,021   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-02T11:12:04,024   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-02T11:12:04,025   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-02T11:12:04,027   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-02T11:12:04,034   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-02T11:12:04,036   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-02T11:12:04,038   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-02T11:12:04,040   adding 'moleculekit-1.7.17.dist-info/LICENSE'
2023-10-02T11:12:04,041   adding 'moleculekit-1.7.17.dist-info/METADATA'
2023-10-02T11:12:04,042   adding 'moleculekit-1.7.17.dist-info/WHEEL'
2023-10-02T11:12:04,043   adding 'moleculekit-1.7.17.dist-info/top_level.txt'
2023-10-02T11:12:04,048   adding 'moleculekit-1.7.17.dist-info/RECORD'
2023-10-02T11:12:04,204   removing build/bdist.linux-armv7l/wheel
2023-10-02T11:12:04,506   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-02T11:12:04,797   Created wheel for moleculekit: filename=moleculekit-1.7.17-cp311-cp311-linux_armv7l.whl size=12839534 sha256=3d78ad27dcb4fc7de5408c47ca8618adb18634a030f0a05cd3239b6cf5cc83cf
2023-10-02T11:12:04,799   Stored in directory: /tmp/pip-ephem-wheel-cache-yqk37fz1/wheels/de/64/a5/2a4821d10fbea68ca8e001496939c4ff6cf2330d1a943763fb
2023-10-02T11:12:04,823 Successfully built moleculekit
2023-10-02T11:12:13,451 Removed build tracker: '/tmp/pip-build-tracker-oesz0o6a'