2023-10-03T02:20:34,018 Created temporary directory: /tmp/pip-build-tracker-st6qc0kh 2023-10-03T02:20:34,019 Initialized build tracking at /tmp/pip-build-tracker-st6qc0kh 2023-10-03T02:20:34,019 Created build tracker: /tmp/pip-build-tracker-st6qc0kh 2023-10-03T02:20:34,020 Entered build tracker: /tmp/pip-build-tracker-st6qc0kh 2023-10-03T02:20:34,020 Created temporary directory: /tmp/pip-wheel-d468kajw 2023-10-03T02:20:34,024 Created temporary directory: /tmp/pip-ephem-wheel-cache-k688x2hl 2023-10-03T02:20:34,045 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-03T02:20:34,049 2 location(s) to search for versions of graftm: 2023-10-03T02:20:34,049 * https://pypi.org/simple/graftm/ 2023-10-03T02:20:34,049 * https://www.piwheels.org/simple/graftm/ 2023-10-03T02:20:34,050 Fetching project page and analyzing links: https://pypi.org/simple/graftm/ 2023-10-03T02:20:34,050 Getting page https://pypi.org/simple/graftm/ 2023-10-03T02:20:34,052 Found index url https://pypi.org/simple/ 2023-10-03T02:20:35,141 Fetched page https://pypi.org/simple/graftm/ as application/vnd.pypi.simple.v1+json 2023-10-03T02:20:35,154 Found link https://files.pythonhosted.org/packages/cf/1e/71db19e29db1663a3c9bcd247df145b243e3f6d410195316b5b1c8ccfd21/graftm-0.5.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.0 2023-10-03T02:20:35,156 Found link https://files.pythonhosted.org/packages/74/04/f648bab21ebd66b9cda9555d2c52f54dc2325378388e58e59a7019fc381e/graftm-0.5.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.2 2023-10-03T02:20:35,157 Found link https://files.pythonhosted.org/packages/4a/e6/6f749f3c87cf6c1dcbc24ce4a72952b3ba4021230e5f545acc4afadd01e1/graftm-0.5.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.3 2023-10-03T02:20:35,158 Found link https://files.pythonhosted.org/packages/1b/50/61a17c245c4672fa5eb3226fef85199c89233cd0b4bb39863f91378213c8/graftm-0.5.4.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.4 2023-10-03T02:20:35,159 Found link https://files.pythonhosted.org/packages/72/58/4b655687b9df5d8fccc5827483b87758829e9bcd39ca289f92d6f3ceda1e/graftm-0.6.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.0 2023-10-03T02:20:35,160 Found link https://files.pythonhosted.org/packages/50/5b/018d941dccc3d7dfc5a05d2d3e53d3483307fbf209359cf89e12fadd5749/graftm-0.6.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.1 2023-10-03T02:20:35,162 Found link https://files.pythonhosted.org/packages/2a/fc/ddcdcab3a801c1f0d9454ab673aa30d0a6d320317119a81efd1b4bd6d1a5/graftm-0.6.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.3 2023-10-03T02:20:35,163 Found link https://files.pythonhosted.org/packages/c4/c5/9d8d9c596f3898544aa025e17090c0f1a5dec0220f6a7d3da992c45b234b/graftm-0.9.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.0 2023-10-03T02:20:35,164 Found link https://files.pythonhosted.org/packages/e3/fd/b797fa957c9d6ff08da532395ba98d3d725bbf39e229ce4a4b4c854cb390/graftm-0.9.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.1 2023-10-03T02:20:35,166 Found link https://files.pythonhosted.org/packages/77/16/b13ed3f18c489fdca20d6e66d8a4b5e66d092ff42ed95e1d60ff9f459729/graftm-0.9.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.2 2023-10-03T02:20:35,167 Found link https://files.pythonhosted.org/packages/9b/78/9afad222dd333c937029a6e8c1e89eed22d2e9ed4c09a388079dd795824b/graftm-0.9.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.3 2023-10-03T02:20:35,168 Found link https://files.pythonhosted.org/packages/a6/1a/44564745af44ec8b416b523a87622e5ae5e9526a191b09cf75a97e28f9fe/graftm-0.9.4.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.4 2023-10-03T02:20:35,169 Found link https://files.pythonhosted.org/packages/a4/23/26fed63cbfd34d145e622342863547b20a720e656b1f64242ead222d7537/graftm-0.9.5.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.5 2023-10-03T02:20:35,170 Found link https://files.pythonhosted.org/packages/d3/45/fb464bff4ea40aae267c7f3f877b7d7fda506691d158aa7f60ed1ccc6bd2/graftm-0.10.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.10.1 2023-10-03T02:20:35,171 Found link https://files.pythonhosted.org/packages/cf/de/2ce62eaeb73fb73b9dafef4eca02a976d427de387f71dd2826b1808317c6/graftm-0.11.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.11.0 2023-10-03T02:20:35,173 Found link https://files.pythonhosted.org/packages/05/d4/2e5f7283cbd155ba82a443dde25617b769ca50f476877a63891242979fbd/graftm-0.11.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.11.1 2023-10-03T02:20:35,174 Found link https://files.pythonhosted.org/packages/ee/c2/89c74e969769b21b31d0d6032155fcbae9a3058f55583ca6c216172befe6/graftm-0.12.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.0 2023-10-03T02:20:35,175 Found link https://files.pythonhosted.org/packages/70/29/db59b6bea48d909460a44e38705f38da052f95b3031919c119157afd283c/graftm-0.12.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.1 2023-10-03T02:20:35,176 Found link https://files.pythonhosted.org/packages/cd/9f/400a7c8d3bf9f21b638c5412a3b39f6f4d7af99bd751c16e4df4dffa0365/graftm-0.12.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.2 2023-10-03T02:20:35,177 Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/1d/c8/7f2d3d8039956a6ca4a5242e65408ec5ccabf848de20fbab9ef293ff5707/graftm-0.13.1-py3-none-any.whl (from https://pypi.org/simple/graftm/) 2023-10-03T02:20:35,178 Found link https://files.pythonhosted.org/packages/2b/32/e48cfc4fa2fc331b996bb821fb5485baab629bc90d48d4621a7543725f3a/graftm-0.13.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.13.1 2023-10-03T02:20:35,179 Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/91/17/24c77ca3d4debec95611633f44120cb789be1398acae34a8a0ea35b40cca/graftm-0.14.0-py3-none-any.whl (from https://pypi.org/simple/graftm/) 2023-10-03T02:20:35,180 Found link https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.14.0 2023-10-03T02:20:35,181 Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/a0/d5/df4517281479ca45c30bf4eb303880c52e138752cbe44a1bee96ca834dbd/graftm-0.15.0-py3-none-any.whl (from https://pypi.org/simple/graftm/) 2023-10-03T02:20:35,182 Found link https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.15.0 2023-10-03T02:20:35,184 Fetching project page and analyzing links: https://www.piwheels.org/simple/graftm/ 2023-10-03T02:20:35,185 Getting page https://www.piwheels.org/simple/graftm/ 2023-10-03T02:20:35,187 Found index url https://www.piwheels.org/simple/ 2023-10-03T02:20:35,387 Fetched page https://www.piwheels.org/simple/graftm/ as text/html 2023-10-03T02:20:35,391 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.14.0-py3-none-any.whl#sha256=7a82ccaa98c671484d055482090b012badab234534266066179a71a9c61df7ef (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,392 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.13.1-py3-none-any.whl#sha256=54ef11fe7098cea440997a2a33e9f2a1e072c7491f86e7323e66c8fe20971e2b (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,393 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.2-py3-none-any.whl#sha256=fc902b78b560a8c57f1033ebad70615d1e9ee36d4f6d28e7f22dee5d12858cb6 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,393 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.1-py3-none-any.whl#sha256=0f175062375a657321453af41daeded35d2125c437916fb48f96b6bbea6fd0d6 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,394 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.0-py3-none-any.whl#sha256=2a42e4a46bf20cb0eec97d47c57480400bb9960207048293089cdb5f80cff3b1 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,394 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.1-py3-none-any.whl#sha256=834769724ca84a4d3f832356411c6b1b1fde9558552b47673dce4a4a8d9b2762 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,395 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.0-py3-none-any.whl#sha256=96555eec3fa770a90d6c2f49ee30bf551b72cdb2f585722070e96fcf06932d54 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,396 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.10.1-py3-none-any.whl#sha256=a6eb49f2f793418b6bc9b3c68d8b256967fa2db3198a0c25a8f18d7f82906955 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,396 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.5-py3-none-any.whl#sha256=de155e8f64ea68fc88ff78c2b7cdab6fd85563e43cd50cb5e88df7abcfc813a8 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,397 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.4-py3-none-any.whl#sha256=e73ceab33e2600b85aa818597ea6ccbbff5cc96053dbeb78e62130dcc78d5430 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,397 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.3-py3-none-any.whl#sha256=091aeb22cff06ef6d5c22956708686271669e83abfefcf4a15fafafbb829fc00 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,398 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.2-py3-none-any.whl#sha256=7b074dcfa75788c11263d9d593d29255d686b145af754746f52f12966555fbdc (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,398 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.1-py3-none-any.whl#sha256=f1540f8a25064d0f18b0a75f1b25983944ce06cc5cbedf9588733a27a136cc77 (from https://www.piwheels.org/simple/graftm/) 2023-10-03T02:20:35,399 Skipping link: not a file: https://www.piwheels.org/simple/graftm/ 2023-10-03T02:20:35,399 Skipping link: not a file: https://pypi.org/simple/graftm/ 2023-10-03T02:20:35,422 Given no hashes to check 1 links for project 'graftm': discarding no candidates 2023-10-03T02:20:35,441 Collecting graftm==0.15.0 2023-10-03T02:20:35,444 Created temporary directory: /tmp/pip-unpack-hols9b14 2023-10-03T02:20:35,669 Downloading graftm-0.15.0.tar.gz (12.5 MB) 2023-10-03T02:20:39,971 Added graftm==0.15.0 from https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz to build tracker '/tmp/pip-build-tracker-st6qc0kh' 2023-10-03T02:20:39,973 Running setup.py (path:/tmp/pip-wheel-d468kajw/graftm_219702dea3c84c28a52531ba86e9f4bc/setup.py) egg_info for package graftm 2023-10-03T02:20:39,974 Created temporary directory: /tmp/pip-pip-egg-info-ku_6f_l8 2023-10-03T02:20:39,975 Preparing metadata (setup.py): started 2023-10-03T02:20:39,976 Running command python setup.py egg_info 2023-10-03T02:20:40,699 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-03T02:20:40,699 !! 2023-10-03T02:20:40,700 ******************************************************************************** 2023-10-03T02:20:40,701 Requirements should be satisfied by a PEP 517 installer. 2023-10-03T02:20:40,701 If you are using pip, you can try `pip install --use-pep517`. 2023-10-03T02:20:40,702 ******************************************************************************** 2023-10-03T02:20:40,703 !! 2023-10-03T02:20:40,704 dist.fetch_build_eggs(dist.setup_requires) 2023-10-03T02:20:43,825 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'description_content_type' 2023-10-03T02:20:43,826 warnings.warn(msg) 2023-10-03T02:20:43,914 running egg_info 2023-10-03T02:20:43,916 creating /tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info 2023-10-03T02:20:43,942 writing /tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/PKG-INFO 2023-10-03T02:20:43,945 writing dependency_links to /tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/dependency_links.txt 2023-10-03T02:20:43,947 writing requirements to /tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/requires.txt 2023-10-03T02:20:43,948 writing top-level names to /tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/top_level.txt 2023-10-03T02:20:43,950 writing manifest file '/tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/SOURCES.txt' 2023-10-03T02:20:44,069 reading manifest file '/tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/SOURCES.txt' 2023-10-03T02:20:44,071 reading manifest template 'MANIFEST.in' 2023-10-03T02:20:44,073 warning: no files found matching '*.txt' under directory 'examples' 2023-10-03T02:20:44,073 warning: no files found matching '*.py' under directory 'examples' 2023-10-03T02:20:44,123 adding license file 'LICENCE.txt' 2023-10-03T02:20:44,131 writing manifest file '/tmp/pip-pip-egg-info-ku_6f_l8/graftm.egg-info/SOURCES.txt' 2023-10-03T02:20:44,246 Preparing metadata (setup.py): finished with status 'done' 2023-10-03T02:20:44,250 Source in /tmp/pip-wheel-d468kajw/graftm_219702dea3c84c28a52531ba86e9f4bc has version 0.15.0, which satisfies requirement graftm==0.15.0 from https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz 2023-10-03T02:20:44,251 Removed graftm==0.15.0 from https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz from build tracker '/tmp/pip-build-tracker-st6qc0kh' 2023-10-03T02:20:44,256 Created temporary directory: /tmp/pip-unpack-b7g7a4vv 2023-10-03T02:20:44,257 Created temporary directory: /tmp/pip-unpack-a9uec9w5 2023-10-03T02:20:44,274 Building wheels for collected packages: graftm 2023-10-03T02:20:44,278 Created temporary directory: /tmp/pip-wheel-e1fxtovn 2023-10-03T02:20:44,278 Building wheel for graftm (setup.py): started 2023-10-03T02:20:44,280 Destination directory: /tmp/pip-wheel-e1fxtovn 2023-10-03T02:20:44,280 Running command python setup.py bdist_wheel 2023-10-03T02:20:44,973 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-03T02:20:44,973 !! 2023-10-03T02:20:44,975 ******************************************************************************** 2023-10-03T02:20:44,975 Requirements should be satisfied by a PEP 517 installer. 2023-10-03T02:20:44,976 If you are using pip, you can try `pip install --use-pep517`. 2023-10-03T02:20:44,976 ******************************************************************************** 2023-10-03T02:20:44,978 !! 2023-10-03T02:20:44,978 dist.fetch_build_eggs(dist.setup_requires) 2023-10-03T02:20:45,174 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'description_content_type' 2023-10-03T02:20:45,174 warnings.warn(msg) 2023-10-03T02:20:45,530 running bdist_wheel 2023-10-03T02:20:45,660 running build 2023-10-03T02:20:45,661 running build_py 2023-10-03T02:20:45,690 creating build 2023-10-03T02:20:45,691 creating build/lib 2023-10-03T02:20:45,692 creating build/lib/graftm 2023-10-03T02:20:45,693 copying graftm/getaxnseq.py -> build/lib/graftm 2023-10-03T02:20:45,695 copying graftm/update.py -> build/lib/graftm 2023-10-03T02:20:45,698 copying graftm/__init__.py -> build/lib/graftm 2023-10-03T02:20:45,699 copying graftm/reannotator.py -> build/lib/graftm 2023-10-03T02:20:45,701 copying graftm/timeit.py -> build/lib/graftm 2023-10-03T02:20:45,703 copying graftm/classify.py -> build/lib/graftm 2023-10-03T02:20:45,705 copying graftm/sequence_search_results.py -> build/lib/graftm 2023-10-03T02:20:45,707 copying graftm/diamond.py -> build/lib/graftm 2023-10-03T02:20:45,708 copying graftm/decorator.py -> build/lib/graftm 2023-10-03T02:20:45,710 copying graftm/taxonomy_extractor.py -> build/lib/graftm 2023-10-03T02:20:45,711 copying graftm/graftm_package.py -> build/lib/graftm 2023-10-03T02:20:45,713 copying graftm/readHmmTable.py -> build/lib/graftm 2023-10-03T02:20:45,715 copying graftm/sequence_searcher.py -> build/lib/graftm 2023-10-03T02:20:45,718 copying graftm/taxonomy_cleaner.py -> build/lib/graftm 2023-10-03T02:20:45,719 copying graftm/sequence_io.py -> build/lib/graftm 2023-10-03T02:20:45,721 copying graftm/graftm_output_paths.py -> build/lib/graftm 2023-10-03T02:20:45,723 copying graftm/housekeeping.py -> build/lib/graftm 2023-10-03T02:20:45,725 copying graftm/decoy_filter.py -> build/lib/graftm 2023-10-03T02:20:45,726 copying graftm/create.py -> build/lib/graftm 2023-10-03T02:20:45,729 copying graftm/orfm.py -> build/lib/graftm 2023-10-03T02:20:45,730 copying graftm/tree_decorator.py -> build/lib/graftm 2023-10-03T02:20:45,732 copying graftm/hmmsearcher.py -> build/lib/graftm 2023-10-03T02:20:45,734 copying graftm/unpack_sequences.py -> build/lib/graftm 2023-10-03T02:20:45,736 copying graftm/external_program_suite.py -> build/lib/graftm 2023-10-03T02:20:45,738 copying graftm/version.py -> build/lib/graftm 2023-10-03T02:20:45,739 copying graftm/clusterer.py -> build/lib/graftm 2023-10-03T02:20:45,741 copying graftm/deduplicator.py -> build/lib/graftm 2023-10-03T02:20:45,743 copying graftm/rerooter.py -> build/lib/graftm 2023-10-03T02:20:45,745 copying graftm/db_search_results.py -> build/lib/graftm 2023-10-03T02:20:45,746 copying graftm/dendropy_tree_cleaner.py -> build/lib/graftm 2023-10-03T02:20:45,748 copying graftm/expand_searcher.py -> build/lib/graftm 2023-10-03T02:20:45,750 copying graftm/sequence_extractor.py -> build/lib/graftm 2023-10-03T02:20:45,752 copying graftm/greengenes_taxonomy.py -> build/lib/graftm 2023-10-03T02:20:45,754 copying graftm/run.py -> build/lib/graftm 2023-10-03T02:20:45,756 copying graftm/pplacer.py -> build/lib/graftm 2023-10-03T02:20:45,759 copying graftm/summarise.py -> build/lib/graftm 2023-10-03T02:20:45,761 copying graftm/archive.py -> build/lib/graftm 2023-10-03T02:20:45,763 copying graftm/search_table.py -> build/lib/graftm 2023-10-03T02:20:45,766 running build_scripts 2023-10-03T02:20:45,767 creating build/scripts-3.11 2023-10-03T02:20:45,768 copying and adjusting bin/graftM -> build/scripts-3.11 2023-10-03T02:20:45,771 changing mode of build/scripts-3.11/graftM from 644 to 755 2023-10-03T02:20:45,799 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-03T02:20:45,800 !! 2023-10-03T02:20:45,801 ******************************************************************************** 2023-10-03T02:20:45,802 Please avoid running ``setup.py`` directly. 2023-10-03T02:20:45,802 Instead, use pypa/build, pypa/installer or other 2023-10-03T02:20:45,803 standards-based tools. 2023-10-03T02:20:45,804 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-03T02:20:45,804 ******************************************************************************** 2023-10-03T02:20:45,806 !! 2023-10-03T02:20:45,806 self.initialize_options() 2023-10-03T02:20:45,827 installing to build/bdist.linux-armv7l/wheel 2023-10-03T02:20:45,827 running install 2023-10-03T02:20:45,851 running install_lib 2023-10-03T02:20:45,877 creating build/bdist.linux-armv7l 2023-10-03T02:20:45,877 creating build/bdist.linux-armv7l/wheel 2023-10-03T02:20:45,879 creating build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,880 copying build/lib/graftm/getaxnseq.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,883 copying build/lib/graftm/update.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,885 copying build/lib/graftm/__init__.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,887 copying build/lib/graftm/reannotator.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,888 copying build/lib/graftm/timeit.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,890 copying build/lib/graftm/classify.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,892 copying build/lib/graftm/sequence_search_results.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,894 copying build/lib/graftm/diamond.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,896 copying build/lib/graftm/decorator.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,897 copying build/lib/graftm/taxonomy_extractor.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,899 copying build/lib/graftm/graftm_package.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,901 copying build/lib/graftm/readHmmTable.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,903 copying build/lib/graftm/sequence_searcher.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,906 copying build/lib/graftm/taxonomy_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,908 copying build/lib/graftm/sequence_io.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,909 copying build/lib/graftm/graftm_output_paths.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,911 copying build/lib/graftm/housekeeping.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,913 copying build/lib/graftm/decoy_filter.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,915 copying build/lib/graftm/create.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,918 copying build/lib/graftm/orfm.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,919 copying build/lib/graftm/tree_decorator.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,921 copying build/lib/graftm/hmmsearcher.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,923 copying build/lib/graftm/unpack_sequences.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,926 copying build/lib/graftm/external_program_suite.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,927 copying build/lib/graftm/version.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,929 copying build/lib/graftm/clusterer.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,931 copying build/lib/graftm/deduplicator.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,933 copying build/lib/graftm/rerooter.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,935 copying build/lib/graftm/db_search_results.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,937 copying build/lib/graftm/dendropy_tree_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,939 copying build/lib/graftm/expand_searcher.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,941 copying build/lib/graftm/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,943 copying build/lib/graftm/greengenes_taxonomy.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,945 copying build/lib/graftm/run.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,948 copying build/lib/graftm/pplacer.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,950 copying build/lib/graftm/summarise.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,952 copying build/lib/graftm/archive.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,955 copying build/lib/graftm/search_table.py -> build/bdist.linux-armv7l/wheel/graftm 2023-10-03T02:20:45,958 running install_data 2023-10-03T02:20:45,989 creating build/bdist.linux-armv7l/wheel/graftm-0.15.0.data 2023-10-03T02:20:45,990 creating build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/data 2023-10-03T02:20:45,991 creating build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/data/share 2023-10-03T02:20:45,992 copying share/18S.hmm -> build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/data/share 2023-10-03T02:20:45,999 running install_egg_info 2023-10-03T02:20:46,027 running egg_info 2023-10-03T02:20:46,053 writing graftm.egg-info/PKG-INFO 2023-10-03T02:20:46,057 writing dependency_links to graftm.egg-info/dependency_links.txt 2023-10-03T02:20:46,059 writing requirements to graftm.egg-info/requires.txt 2023-10-03T02:20:46,061 writing top-level names to graftm.egg-info/top_level.txt 2023-10-03T02:20:46,092 reading manifest file 'graftm.egg-info/SOURCES.txt' 2023-10-03T02:20:46,098 reading manifest template 'MANIFEST.in' 2023-10-03T02:20:46,100 warning: no files found matching '*.txt' under directory 'examples' 2023-10-03T02:20:46,100 warning: no files found matching '*.py' under directory 'examples' 2023-10-03T02:20:46,145 adding license file 'LICENCE.txt' 2023-10-03T02:20:46,155 writing manifest file 'graftm.egg-info/SOURCES.txt' 2023-10-03T02:20:46,157 Copying graftm.egg-info to build/bdist.linux-armv7l/wheel/graftm-0.15.0-py3.11.egg-info 2023-10-03T02:20:46,167 running install_scripts 2023-10-03T02:20:46,169 creating build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/scripts 2023-10-03T02:20:46,170 copying build/scripts-3.11/graftM -> build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/scripts 2023-10-03T02:20:46,173 changing mode of build/bdist.linux-armv7l/wheel/graftm-0.15.0.data/scripts/graftM to 755 2023-10-03T02:20:46,189 creating build/bdist.linux-armv7l/wheel/graftm-0.15.0.dist-info/WHEEL 2023-10-03T02:20:46,192 creating '/tmp/pip-wheel-e1fxtovn/graftm-0.15.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-03T02:20:46,195 adding 'graftm/__init__.py' 2023-10-03T02:20:46,197 adding 'graftm/archive.py' 2023-10-03T02:20:46,199 adding 'graftm/classify.py' 2023-10-03T02:20:46,201 adding 'graftm/clusterer.py' 2023-10-03T02:20:46,206 adding 'graftm/create.py' 2023-10-03T02:20:46,209 adding 'graftm/db_search_results.py' 2023-10-03T02:20:46,210 adding 'graftm/decorator.py' 2023-10-03T02:20:46,212 adding 'graftm/decoy_filter.py' 2023-10-03T02:20:46,214 adding 'graftm/deduplicator.py' 2023-10-03T02:20:46,216 adding 'graftm/dendropy_tree_cleaner.py' 2023-10-03T02:20:46,218 adding 'graftm/diamond.py' 2023-10-03T02:20:46,220 adding 'graftm/expand_searcher.py' 2023-10-03T02:20:46,222 adding 'graftm/external_program_suite.py' 2023-10-03T02:20:46,224 adding 'graftm/getaxnseq.py' 2023-10-03T02:20:46,226 adding 'graftm/graftm_output_paths.py' 2023-10-03T02:20:46,228 adding 'graftm/graftm_package.py' 2023-10-03T02:20:46,230 adding 'graftm/greengenes_taxonomy.py' 2023-10-03T02:20:46,232 adding 'graftm/hmmsearcher.py' 2023-10-03T02:20:46,234 adding 'graftm/housekeeping.py' 2023-10-03T02:20:46,236 adding 'graftm/orfm.py' 2023-10-03T02:20:46,238 adding 'graftm/pplacer.py' 2023-10-03T02:20:46,240 adding 'graftm/readHmmTable.py' 2023-10-03T02:20:46,242 adding 'graftm/reannotator.py' 2023-10-03T02:20:46,244 adding 'graftm/rerooter.py' 2023-10-03T02:20:46,249 adding 'graftm/run.py' 2023-10-03T02:20:46,251 adding 'graftm/search_table.py' 2023-10-03T02:20:46,253 adding 'graftm/sequence_extractor.py' 2023-10-03T02:20:46,254 adding 'graftm/sequence_io.py' 2023-10-03T02:20:46,256 adding 'graftm/sequence_search_results.py' 2023-10-03T02:20:46,263 adding 'graftm/sequence_searcher.py' 2023-10-03T02:20:46,265 adding 'graftm/summarise.py' 2023-10-03T02:20:46,267 adding 'graftm/taxonomy_cleaner.py' 2023-10-03T02:20:46,269 adding 'graftm/taxonomy_extractor.py' 2023-10-03T02:20:46,270 adding 'graftm/timeit.py' 2023-10-03T02:20:46,272 adding 'graftm/tree_decorator.py' 2023-10-03T02:20:46,274 adding 'graftm/unpack_sequences.py' 2023-10-03T02:20:46,277 adding 'graftm/update.py' 2023-10-03T02:20:46,278 adding 'graftm/version.py' 2023-10-03T02:20:46,351 adding 'graftm-0.15.0.data/data/share/18S.hmm' 2023-10-03T02:20:46,358 adding 'graftm-0.15.0.data/scripts/graftM' 2023-10-03T02:20:46,365 adding 'graftm-0.15.0.dist-info/LICENCE.txt' 2023-10-03T02:20:46,367 adding 'graftm-0.15.0.dist-info/METADATA' 2023-10-03T02:20:46,369 adding 'graftm-0.15.0.dist-info/WHEEL' 2023-10-03T02:20:46,370 adding 'graftm-0.15.0.dist-info/top_level.txt' 2023-10-03T02:20:46,372 adding 'graftm-0.15.0.dist-info/RECORD' 2023-10-03T02:20:46,377 removing build/bdist.linux-armv7l/wheel 2023-10-03T02:20:46,504 Building wheel for graftm (setup.py): finished with status 'done' 2023-10-03T02:20:46,509 Created wheel for graftm: filename=graftm-0.15.0-py3-none-any.whl size=206141 sha256=d13296fffe5ea212565d13963387550c67f70a6506fa258584fb414fa24f8253 2023-10-03T02:20:46,511 Stored in directory: /tmp/pip-ephem-wheel-cache-k688x2hl/wheels/0c/64/40/bdebada6be2de032e171abca575375627a54887e88850ac666 2023-10-03T02:20:46,523 Successfully built graftm 2023-10-03T02:20:46,534 Removed build tracker: '/tmp/pip-build-tracker-st6qc0kh'