2023-10-03T19:24:32,610 Created temporary directory: /tmp/pip-build-tracker-nptsm8tl
2023-10-03T19:24:32,611 Initialized build tracking at /tmp/pip-build-tracker-nptsm8tl
2023-10-03T19:24:32,611 Created build tracker: /tmp/pip-build-tracker-nptsm8tl
2023-10-03T19:24:32,612 Entered build tracker: /tmp/pip-build-tracker-nptsm8tl
2023-10-03T19:24:32,612 Created temporary directory: /tmp/pip-wheel-ibzvtruv
2023-10-03T19:24:32,616 Created temporary directory: /tmp/pip-ephem-wheel-cache-7i9ilhjh
2023-10-03T19:24:32,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-03T19:24:32,644 2 location(s) to search for versions of moleculekit:
2023-10-03T19:24:32,644 * https://pypi.org/simple/moleculekit/
2023-10-03T19:24:32,644 * https://www.piwheels.org/simple/moleculekit/
2023-10-03T19:24:32,645 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-03T19:24:32,645 Getting page https://pypi.org/simple/moleculekit/
2023-10-03T19:24:32,646 Found index url https://pypi.org/simple/
2023-10-03T19:24:32,779 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-03T19:24:32,817   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,817   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-03T19:24:32,818   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,818   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-03T19:24:32,818   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,818   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-03T19:24:32,819   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,819   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-03T19:24:32,819   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,819   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-03T19:24:32,820   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,820   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-03T19:24:32,820   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,820   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-03T19:24:32,821   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,821   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-03T19:24:32,821   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,821   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-03T19:24:32,822   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,822   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-03T19:24:32,822   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,822   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-03T19:24:32,822   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,823   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-03T19:24:32,823   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,823   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-03T19:24:32,823   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,824   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-03T19:24:32,824   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,824   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-03T19:24:32,824   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,825   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-03T19:24:32,825   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,825   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-03T19:24:32,825   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,825   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-03T19:24:32,826   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,826   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-03T19:24:32,826   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,826   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-03T19:24:32,827   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,827   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-03T19:24:32,827   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,827   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-03T19:24:32,828   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,828   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-03T19:24:32,828   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,828   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-03T19:24:32,829   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,829   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-03T19:24:32,829   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,829   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-03T19:24:32,829   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,830   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-03T19:24:32,830   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,830   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-03T19:24:32,830   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,831   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-03T19:24:32,831   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,831   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-03T19:24:32,831   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,832   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-03T19:24:32,832   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-03T19:24:32,832   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-03T19:24:32,832   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-03T19:24:32,875   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-03T19:24:32,876   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-03T19:24:32,876   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-03T19:24:32,877   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-03T19:24:32,878   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-03T19:24:32,878   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-03T19:24:32,879   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-03T19:24:32,879   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-03T19:24:32,880   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-03T19:24:32,880   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-03T19:24:32,881   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-03T19:24:32,881   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-03T19:24:32,882   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-03T19:24:32,882   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-03T19:24:32,883 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-03T19:24:32,883 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-03T19:24:32,884 Found index url https://www.piwheels.org/simple/
2023-10-03T19:24:32,966 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-10-03T19:24:33,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.7.17-cp311-cp311-linux_armv7l.whl#sha256=3d78ad27dcb4fc7de5408c47ca8618adb18634a030f0a05cd3239b6cf5cc83cf (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-10-03T19:24:33,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-03T19:24:33,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-03T19:24:33,075 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-03T19:24:33,075 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-03T19:24:33,115 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-03T19:24:33,131 Collecting moleculekit==1.7.13
2023-10-03T19:24:33,133   Created temporary directory: /tmp/pip-unpack-1sq15jxv
2023-10-03T19:24:33,515   Downloading moleculekit-1.7.13.tar.gz (6.2 MB)
2023-10-03T19:24:35,732   Added moleculekit==1.7.13 from https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz to build tracker '/tmp/pip-build-tracker-nptsm8tl'
2023-10-03T19:24:35,740   Created temporary directory: /tmp/pip-build-env-vimvpn21
2023-10-03T19:24:35,750   Installing build dependencies: started
2023-10-03T19:24:35,751   Running command pip subprocess to install build dependencies
2023-10-03T19:24:36,917   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-03T19:24:37,451   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-03T19:24:39,074   Collecting setuptools
2023-10-03T19:24:39,147     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-03T19:24:40,509   Collecting numpy>=1.18.5
2023-10-03T19:24:41,408     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp39-cp39-linux_armv7l.whl (12.5 MB)
2023-10-03T19:24:43,450   Collecting Cython>=0.29.21
2023-10-03T19:24:44,224     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-03T19:24:44,586   Collecting toml
2023-10-03T19:24:44,603     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-03T19:24:44,789   Collecting versioneer[toml]==0.28
2023-10-03T19:24:44,804     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-03T19:24:44,829        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.3 MB/s eta 0:00:00
2023-10-03T19:24:44,977   Collecting tomli (from versioneer[toml]==0.28)
2023-10-03T19:24:44,994     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-03T19:24:46,768   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-03T19:24:46,804     Creating /tmp/pip-build-env-vimvpn21/overlay/bin
2023-10-03T19:24:46,807     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/versioneer to 755
2023-10-03T19:24:57,303     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/f2py to 755
2023-10-03T19:24:57,305     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/f2py3 to 755
2023-10-03T19:24:57,307     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/f2py3.9 to 755
2023-10-03T19:25:00,732     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/cygdb to 755
2023-10-03T19:25:00,734     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/cython to 755
2023-10-03T19:25:00,736     changing mode of /tmp/pip-build-env-vimvpn21/overlay/bin/cythonize to 755
2023-10-03T19:25:00,762   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-03T19:25:00,762   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.25.2 which is incompatible.
2023-10-03T19:25:00,763   Successfully installed Cython-3.0.2 numpy-1.25.2 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-03T19:25:01,377   Installing build dependencies: finished with status 'done'
2023-10-03T19:25:01,382   Getting requirements to build wheel: started
2023-10-03T19:25:01,383   Running command Getting requirements to build wheel
2023-10-03T19:25:39,841   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,842   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,843   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,844   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,844   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-03T19:25:39,844   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-03T19:25:39,844   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-03T19:25:39,844   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-03T19:25:39,844   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-03T19:25:39,844   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-03T19:25:39,845   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-03T19:25:39,845   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-03T19:25:39,845   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-03T19:25:39,845   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-03T19:25:39,845   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-03T19:25:39,845   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-03T19:25:39,845   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-03T19:25:40,138   running egg_info
2023-10-03T19:25:40,145   writing moleculekit.egg-info/PKG-INFO
2023-10-03T19:25:40,148   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-03T19:25:40,150   writing requirements to moleculekit.egg-info/requires.txt
2023-10-03T19:25:40,152   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-03T19:25:40,175   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,176   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,177   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,178   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,179   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,180   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,181   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,182   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,183   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,183   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,183   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,183   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:40,191   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:40,229   reading manifest template 'MANIFEST.in'
2023-10-03T19:25:40,490   no previously-included directories found matching 'moleculekit/test-data'
2023-10-03T19:25:40,492   no previously-included directories found matching 'moleculekit/tests'
2023-10-03T19:25:40,493   no previously-included directories found matching 'package'
2023-10-03T19:25:40,493   adding license file 'LICENSE'
2023-10-03T19:25:40,510   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:41,462   Getting requirements to build wheel: finished with status 'done'
2023-10-03T19:25:41,477   Installing backend dependencies: started
2023-10-03T19:25:41,477   Running command pip subprocess to install backend dependencies
2023-10-03T19:25:42,715   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-03T19:25:43,286   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-03T19:25:43,661   Collecting wheel
2023-10-03T19:25:43,680     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-03T19:25:45,246   Installing collected packages: wheel
2023-10-03T19:25:46,310     Creating /tmp/pip-build-env-vimvpn21/normal/bin
2023-10-03T19:25:46,312     changing mode of /tmp/pip-build-env-vimvpn21/normal/bin/wheel to 755
2023-10-03T19:25:46,330   Successfully installed wheel-0.41.2
2023-10-03T19:25:46,779   Installing backend dependencies: finished with status 'done'
2023-10-03T19:25:46,781   Created temporary directory: /tmp/pip-modern-metadata-a_ta0a8o
2023-10-03T19:25:46,784   Preparing metadata (pyproject.toml): started
2023-10-03T19:25:46,785   Running command Preparing metadata (pyproject.toml)
2023-10-03T19:25:50,009   running dist_info
2023-10-03T19:25:50,012   creating /tmp/pip-modern-metadata-a_ta0a8o/moleculekit.egg-info
2023-10-03T19:25:50,018   writing /tmp/pip-modern-metadata-a_ta0a8o/moleculekit.egg-info/PKG-INFO
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2023-10-03T19:25:50,029   writing manifest file '/tmp/pip-modern-metadata-a_ta0a8o/moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:50,055   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,056   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,056   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,057   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,057   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,057   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,058   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,058   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,058   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,059   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,059   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,059   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,060   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,060   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,060   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,061   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,061   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,061   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,062   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,062   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,062   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,063   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,063   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,063   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,064   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,064   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,064   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,065   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,065   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,065   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,066   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,066   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,066   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,067   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,067   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,067   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,068   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,068   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,068   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,069   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,069   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,069   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,070   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,070   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,070   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,071   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,071   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,072   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,072   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,072   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,073   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,073   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,074   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,074   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,074   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:50,082   reading manifest file '/tmp/pip-modern-metadata-a_ta0a8o/moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:50,084   reading manifest template 'MANIFEST.in'
2023-10-03T19:25:50,329   no previously-included directories found matching 'moleculekit/test-data'
2023-10-03T19:25:50,330   no previously-included directories found matching 'moleculekit/tests'
2023-10-03T19:25:50,331   no previously-included directories found matching 'package'
2023-10-03T19:25:50,332   adding license file 'LICENSE'
2023-10-03T19:25:50,344   writing manifest file '/tmp/pip-modern-metadata-a_ta0a8o/moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:50,425   creating '/tmp/pip-modern-metadata-a_ta0a8o/moleculekit-1.7.13.dist-info'
2023-10-03T19:25:50,622   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-03T19:25:50,629   Source in /tmp/pip-wheel-ibzvtruv/moleculekit_694c7def075246efae5cbe35609f4e83 has version 1.7.13, which satisfies requirement moleculekit==1.7.13 from https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz
2023-10-03T19:25:50,630   Removed moleculekit==1.7.13 from https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz from build tracker '/tmp/pip-build-tracker-nptsm8tl'
2023-10-03T19:25:50,636 Created temporary directory: /tmp/pip-unpack-h5n8yvp1
2023-10-03T19:25:50,637 Created temporary directory: /tmp/pip-unpack-rdd5solv
2023-10-03T19:25:50,645 Building wheels for collected packages: moleculekit
2023-10-03T19:25:50,649   Created temporary directory: /tmp/pip-wheel-4qkj98gp
2023-10-03T19:25:50,650   Destination directory: /tmp/pip-wheel-4qkj98gp
2023-10-03T19:25:50,652   Building wheel for moleculekit (pyproject.toml): started
2023-10-03T19:25:50,653   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-03T19:25:52,877   running bdist_wheel
2023-10-03T19:25:52,894   running build
2023-10-03T19:25:52,894   running build_py
2023-10-03T19:25:52,902   creating build
2023-10-03T19:25:52,902   creating build/lib.linux-armv7l-cpython-39
2023-10-03T19:25:52,903   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,904   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,907   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,908   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,910   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,912   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,914   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,915   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,918   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,919   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,921   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,923   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,929   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,930   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,933   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,934   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,937   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,939   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,941   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,944   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,949   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,951   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:52,954   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,955   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,958   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,960   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,962   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,965   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,967   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,970   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,972   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,975   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,976   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,979   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,981   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,984   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,986   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,989   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-03T19:25:52,991   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-03T19:25:52,992   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-03T19:25:52,996   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-03T19:25:52,998   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-03T19:25:53,001   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-03T19:25:53,002   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-03T19:25:53,005   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-03T19:25:53,008   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-03T19:25:53,008   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-03T19:25:53,011   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-03T19:25:53,013   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-03T19:25:53,015   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-03T19:25:53,018   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-03T19:25:53,019   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-03T19:25:53,021   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,022   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,025   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,027   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,028   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,031   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,033   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-03T19:25:53,037   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,038   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,041   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,044   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,046   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,048   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,051   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,053   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,056   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,058   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,060   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,063   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,065   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,067   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-03T19:25:53,070   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-03T19:25:53,071   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-03T19:25:53,074   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-03T19:25:53,076   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-03T19:25:53,077   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-03T19:25:53,079   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-03T19:25:53,080   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-03T19:25:53,083   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-03T19:25:53,086   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-03T19:25:53,087   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-03T19:25:53,090   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-03T19:25:53,091   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-03T19:25:53,093   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-03T19:25:53,096   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-03T19:25:53,097   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-03T19:25:53,099   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-03T19:25:53,101   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-03T19:25:53,103   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-03T19:25:53,105   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-03T19:25:53,106   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-03T19:25:53,108   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-03T19:25:53,110   running egg_info
2023-10-03T19:25:53,116   writing moleculekit.egg-info/PKG-INFO
2023-10-03T19:25:53,120   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-03T19:25:53,121   writing requirements to moleculekit.egg-info/requires.txt
2023-10-03T19:25:53,123   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-03T19:25:53,136   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,136   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,136   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,137   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,138   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,139   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,140   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,141   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,142   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,143   dependency /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-03T19:25:53,150   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:53,158   reading manifest template 'MANIFEST.in'
2023-10-03T19:25:53,396   no previously-included directories found matching 'moleculekit/test-data'
2023-10-03T19:25:53,397   no previously-included directories found matching 'moleculekit/tests'
2023-10-03T19:25:53,398   no previously-included directories found matching 'package'
2023-10-03T19:25:53,398   adding license file 'LICENSE'
2023-10-03T19:25:53,415   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-03T19:25:53,426   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-03T19:25:53,426   !!

2023-10-03T19:25:53,427           ********************************************************************************
2023-10-03T19:25:53,427           ############################
2023-10-03T19:25:53,427           # Package would be ignored #
2023-10-03T19:25:53,427           ############################
2023-10-03T19:25:53,427           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-03T19:25:53,427           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,427           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,428           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-03T19:25:53,428           to the `packages` configuration field.

2023-10-03T19:25:53,428           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,428           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,428           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,428           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,429           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,429           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-03T19:25:53,429           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-03T19:25:53,429           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,429           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,429           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,430           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,430           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,430           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,430                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,430                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,430                 directory, all directories are treated like packages.
2023-10-03T19:25:53,431           ********************************************************************************

2023-10-03T19:25:53,431   !!
2023-10-03T19:25:53,431     check.warn(importable)
2023-10-03T19:25:53,431   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-03T19:25:53,431   !!

2023-10-03T19:25:53,432           ********************************************************************************
2023-10-03T19:25:53,432           ############################
2023-10-03T19:25:53,432           # Package would be ignored #
2023-10-03T19:25:53,432           ############################
2023-10-03T19:25:53,432           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-03T19:25:53,432           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,432           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,432           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-03T19:25:53,433           to the `packages` configuration field.

2023-10-03T19:25:53,433           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,433           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,433           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,433           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,433           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,434           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-03T19:25:53,434           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-03T19:25:53,434           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,434           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,434           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,434           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,435           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,435           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,435                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,435                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,435                 directory, all directories are treated like packages.
2023-10-03T19:25:53,435           ********************************************************************************

2023-10-03T19:25:53,436   !!
2023-10-03T19:25:53,436     check.warn(importable)
2023-10-03T19:25:53,436   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-03T19:25:53,436   !!

2023-10-03T19:25:53,436           ********************************************************************************
2023-10-03T19:25:53,436           ############################
2023-10-03T19:25:53,436           # Package would be ignored #
2023-10-03T19:25:53,437           ############################
2023-10-03T19:25:53,437           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-03T19:25:53,437           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,437           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,437           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-03T19:25:53,437           to the `packages` configuration field.

2023-10-03T19:25:53,437           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,438           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,438           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,438           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,438           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,438           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-03T19:25:53,438           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-03T19:25:53,439           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,439           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,439           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,439           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,439           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,440           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,440                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,440                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,440                 directory, all directories are treated like packages.
2023-10-03T19:25:53,440           ********************************************************************************

2023-10-03T19:25:53,440   !!
2023-10-03T19:25:53,440     check.warn(importable)
2023-10-03T19:25:53,441   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-03T19:25:53,441   !!

2023-10-03T19:25:53,441           ********************************************************************************
2023-10-03T19:25:53,441           ############################
2023-10-03T19:25:53,441           # Package would be ignored #
2023-10-03T19:25:53,441           ############################
2023-10-03T19:25:53,441           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-03T19:25:53,442           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,442           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,442           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-03T19:25:53,442           to the `packages` configuration field.

2023-10-03T19:25:53,442           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,442           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,442           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,443           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,443           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,443           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-03T19:25:53,443           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-03T19:25:53,443           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,443           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,444           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,444           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,444           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,444           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,444                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,445                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,445                 directory, all directories are treated like packages.
2023-10-03T19:25:53,445           ********************************************************************************

2023-10-03T19:25:53,445   !!
2023-10-03T19:25:53,445     check.warn(importable)
2023-10-03T19:25:53,445   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-03T19:25:53,445   !!

2023-10-03T19:25:53,446           ********************************************************************************
2023-10-03T19:25:53,446           ############################
2023-10-03T19:25:53,446           # Package would be ignored #
2023-10-03T19:25:53,446           ############################
2023-10-03T19:25:53,446           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-03T19:25:53,446           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,446           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,446           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-03T19:25:53,447           to the `packages` configuration field.

2023-10-03T19:25:53,447           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,447           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,447           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,447           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,447           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,448           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-03T19:25:53,448           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-03T19:25:53,448           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,448           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,448           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,448           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,449           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,449           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,449                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,449                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,449                 directory, all directories are treated like packages.
2023-10-03T19:25:53,450           ********************************************************************************

2023-10-03T19:25:53,450   !!
2023-10-03T19:25:53,450     check.warn(importable)
2023-10-03T19:25:53,450   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-03T19:25:53,450   !!

2023-10-03T19:25:53,450           ********************************************************************************
2023-10-03T19:25:53,450           ############################
2023-10-03T19:25:53,451           # Package would be ignored #
2023-10-03T19:25:53,451           ############################
2023-10-03T19:25:53,451           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-03T19:25:53,451           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,451           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,451           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-03T19:25:53,451           to the `packages` configuration field.

2023-10-03T19:25:53,452           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,452           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,452           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,452           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,452           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,453           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-03T19:25:53,453           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-03T19:25:53,453           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,453           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,453           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,453           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,454           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,454           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,454                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,454                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,454                 directory, all directories are treated like packages.
2023-10-03T19:25:53,454           ********************************************************************************

2023-10-03T19:25:53,455   !!
2023-10-03T19:25:53,455     check.warn(importable)
2023-10-03T19:25:53,455   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-03T19:25:53,455   !!

2023-10-03T19:25:53,455           ********************************************************************************
2023-10-03T19:25:53,455           ############################
2023-10-03T19:25:53,455           # Package would be ignored #
2023-10-03T19:25:53,455           ############################
2023-10-03T19:25:53,456           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-03T19:25:53,456           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,456           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,456           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-03T19:25:53,456           to the `packages` configuration field.

2023-10-03T19:25:53,456           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,456           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,457           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,457           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,457           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,457           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-03T19:25:53,457           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-03T19:25:53,457           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,458           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,458           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,458           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,458           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,458           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,459                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,459                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,459                 directory, all directories are treated like packages.
2023-10-03T19:25:53,459           ********************************************************************************

2023-10-03T19:25:53,459   !!
2023-10-03T19:25:53,459     check.warn(importable)
2023-10-03T19:25:53,459   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-03T19:25:53,459   !!

2023-10-03T19:25:53,460           ********************************************************************************
2023-10-03T19:25:53,460           ############################
2023-10-03T19:25:53,460           # Package would be ignored #
2023-10-03T19:25:53,460           ############################
2023-10-03T19:25:53,460           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-03T19:25:53,460           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,460           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,461           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-03T19:25:53,461           to the `packages` configuration field.

2023-10-03T19:25:53,461           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,461           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,461           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,461           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,461           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,462           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-03T19:25:53,462           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-03T19:25:53,462           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,462           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,462           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,462           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,463           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,463           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,463                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,463                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,463                 directory, all directories are treated like packages.
2023-10-03T19:25:53,463           ********************************************************************************

2023-10-03T19:25:53,464   !!
2023-10-03T19:25:53,464     check.warn(importable)
2023-10-03T19:25:53,464   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-03T19:25:53,464   !!

2023-10-03T19:25:53,464           ********************************************************************************
2023-10-03T19:25:53,464           ############################
2023-10-03T19:25:53,464           # Package would be ignored #
2023-10-03T19:25:53,464           ############################
2023-10-03T19:25:53,465           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-03T19:25:53,465           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,465           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,465           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-03T19:25:53,465           to the `packages` configuration field.

2023-10-03T19:25:53,465           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,465           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,465           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,466           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,466           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,466           If you don't want 'moleculekit.share' to be distributed and are
2023-10-03T19:25:53,466           already explicitly excluding 'moleculekit.share' via
2023-10-03T19:25:53,466           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,466           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,467           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,467           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,467           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,467           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,468                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,468                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,468                 directory, all directories are treated like packages.
2023-10-03T19:25:53,468           ********************************************************************************

2023-10-03T19:25:53,468   !!
2023-10-03T19:25:53,468     check.warn(importable)
2023-10-03T19:25:53,468   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-03T19:25:53,469   !!

2023-10-03T19:25:53,469           ********************************************************************************
2023-10-03T19:25:53,469           ############################
2023-10-03T19:25:53,469           # Package would be ignored #
2023-10-03T19:25:53,469           ############################
2023-10-03T19:25:53,469           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-03T19:25:53,469           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,470           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,470           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-03T19:25:53,470           to the `packages` configuration field.

2023-10-03T19:25:53,470           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,470           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,470           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,471           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,471           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,471           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-03T19:25:53,471           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-03T19:25:53,471           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,472           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,472           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,472           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,472           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,473           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,473                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,473                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,473                 directory, all directories are treated like packages.
2023-10-03T19:25:53,473           ********************************************************************************

2023-10-03T19:25:53,473   !!
2023-10-03T19:25:53,473     check.warn(importable)
2023-10-03T19:25:53,474   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-03T19:25:53,474   !!

2023-10-03T19:25:53,474           ********************************************************************************
2023-10-03T19:25:53,474           ############################
2023-10-03T19:25:53,474           # Package would be ignored #
2023-10-03T19:25:53,474           ############################
2023-10-03T19:25:53,474           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-03T19:25:53,475           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,475           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,475           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-03T19:25:53,475           to the `packages` configuration field.

2023-10-03T19:25:53,475           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,475           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,476           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,476           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,476           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,476           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-03T19:25:53,476           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-03T19:25:53,476           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,477           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,477           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,477           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,477           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,477           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,478                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,478                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,478                 directory, all directories are treated like packages.
2023-10-03T19:25:53,478           ********************************************************************************

2023-10-03T19:25:53,478   !!
2023-10-03T19:25:53,478     check.warn(importable)
2023-10-03T19:25:53,478   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-03T19:25:53,479   !!

2023-10-03T19:25:53,479           ********************************************************************************
2023-10-03T19:25:53,479           ############################
2023-10-03T19:25:53,479           # Package would be ignored #
2023-10-03T19:25:53,479           ############################
2023-10-03T19:25:53,479           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-03T19:25:53,479           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,480           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,480           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-03T19:25:53,480           to the `packages` configuration field.

2023-10-03T19:25:53,480           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,480           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,480           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,481           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,481           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,481           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-03T19:25:53,481           already explicitly excluding 'moleculekit.tmalign' via
2023-10-03T19:25:53,481           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,482           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,482           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,482           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,482           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,483           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,483                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,483                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,483                 directory, all directories are treated like packages.
2023-10-03T19:25:53,483           ********************************************************************************

2023-10-03T19:25:53,483   !!
2023-10-03T19:25:53,483     check.warn(importable)
2023-10-03T19:25:53,484   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-03T19:25:53,484   !!

2023-10-03T19:25:53,484           ********************************************************************************
2023-10-03T19:25:53,484           ############################
2023-10-03T19:25:53,484           # Package would be ignored #
2023-10-03T19:25:53,484           ############################
2023-10-03T19:25:53,485           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-03T19:25:53,485           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,485           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,485           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-03T19:25:53,485           to the `packages` configuration field.

2023-10-03T19:25:53,486           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,486           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,486           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,486           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,486           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,487           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-03T19:25:53,487           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-03T19:25:53,487           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,487           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,487           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,487           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,488           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,488           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,488                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,488                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,489                 directory, all directories are treated like packages.
2023-10-03T19:25:53,489           ********************************************************************************

2023-10-03T19:25:53,489   !!
2023-10-03T19:25:53,489     check.warn(importable)
2023-10-03T19:25:53,489   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-03T19:25:53,489   !!

2023-10-03T19:25:53,490           ********************************************************************************
2023-10-03T19:25:53,490           ############################
2023-10-03T19:25:53,490           # Package would be ignored #
2023-10-03T19:25:53,490           ############################
2023-10-03T19:25:53,490           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-03T19:25:53,490           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,491           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,491           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-03T19:25:53,491           to the `packages` configuration field.

2023-10-03T19:25:53,491           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,491           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,491           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,492           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,492           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,492           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-03T19:25:53,492           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-03T19:25:53,493           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,493           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,493           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,493           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,493           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,494           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,494                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,494                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,494                 directory, all directories are treated like packages.
2023-10-03T19:25:53,494           ********************************************************************************

2023-10-03T19:25:53,494   !!
2023-10-03T19:25:53,495     check.warn(importable)
2023-10-03T19:25:53,495   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-03T19:25:53,495   !!

2023-10-03T19:25:53,495           ********************************************************************************
2023-10-03T19:25:53,495           ############################
2023-10-03T19:25:53,495           # Package would be ignored #
2023-10-03T19:25:53,496           ############################
2023-10-03T19:25:53,496           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-03T19:25:53,496           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,496           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,496           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-03T19:25:53,496           to the `packages` configuration field.

2023-10-03T19:25:53,497           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,497           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,497           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,497           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,497           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,498           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-03T19:25:53,498           already explicitly excluding 'moleculekit.wrapping' via
2023-10-03T19:25:53,498           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,498           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,498           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,499           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,499           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,499           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,499                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,499                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,500                 directory, all directories are treated like packages.
2023-10-03T19:25:53,500           ********************************************************************************

2023-10-03T19:25:53,500   !!
2023-10-03T19:25:53,500     check.warn(importable)
2023-10-03T19:25:53,500   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-03T19:25:53,500   !!

2023-10-03T19:25:53,501           ********************************************************************************
2023-10-03T19:25:53,501           ############################
2023-10-03T19:25:53,501           # Package would be ignored #
2023-10-03T19:25:53,501           ############################
2023-10-03T19:25:53,501           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-03T19:25:53,501           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,502           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,502           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-03T19:25:53,502           to the `packages` configuration field.

2023-10-03T19:25:53,502           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,502           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,502           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,503           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,503           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,503           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-03T19:25:53,503           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-03T19:25:53,504           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,504           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,504           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,504           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,504           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,505           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,505                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,505                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,505                 directory, all directories are treated like packages.
2023-10-03T19:25:53,505           ********************************************************************************

2023-10-03T19:25:53,506   !!
2023-10-03T19:25:53,506     check.warn(importable)
2023-10-03T19:25:53,506   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-03T19:25:53,506   !!

2023-10-03T19:25:53,506           ********************************************************************************
2023-10-03T19:25:53,506           ############################
2023-10-03T19:25:53,507           # Package would be ignored #
2023-10-03T19:25:53,507           ############################
2023-10-03T19:25:53,507           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-03T19:25:53,507           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,507           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,507           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-03T19:25:53,507           to the `packages` configuration field.

2023-10-03T19:25:53,508           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,508           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,508           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,508           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,508           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,509           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-03T19:25:53,509           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-03T19:25:53,509           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,509           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,509           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,510           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,510           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,510           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,511                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,511                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,511                 directory, all directories are treated like packages.
2023-10-03T19:25:53,511           ********************************************************************************

2023-10-03T19:25:53,511   !!
2023-10-03T19:25:53,511     check.warn(importable)
2023-10-03T19:25:53,512   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-03T19:25:53,512   !!

2023-10-03T19:25:53,512           ********************************************************************************
2023-10-03T19:25:53,512           ############################
2023-10-03T19:25:53,512           # Package would be ignored #
2023-10-03T19:25:53,512           ############################
2023-10-03T19:25:53,513           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-03T19:25:53,513           but it is absent from setuptools' `packages` configuration.

2023-10-03T19:25:53,513           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-03T19:25:53,513           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-03T19:25:53,513           to the `packages` configuration field.

2023-10-03T19:25:53,513           Alternatively, you can also rely on setuptools' discovery methods
2023-10-03T19:25:53,513           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-03T19:25:53,514           instead of `find_packages(...)`/`find:`).

2023-10-03T19:25:53,514           You can read more about "package discovery" on setuptools documentation page:

2023-10-03T19:25:53,514           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-03T19:25:53,514           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-03T19:25:53,514           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-03T19:25:53,514           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-03T19:25:53,515           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-03T19:25:53,515           combination with a more fine grained `package-data` configuration.

2023-10-03T19:25:53,515           You can read more about "package data files" on setuptools documentation page:

2023-10-03T19:25:53,515           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-03T19:25:53,515           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-03T19:25:53,516                 even if it does not contain any `.py` files.
2023-10-03T19:25:53,516                 On the other hand, currently there is no concept of package data
2023-10-03T19:25:53,516                 directory, all directories are treated like packages.
2023-10-03T19:25:53,516           ********************************************************************************

2023-10-03T19:25:53,516   !!
2023-10-03T19:25:53,516     check.warn(importable)
2023-10-03T19:25:53,516   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:53,517   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:53,517   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-03T19:25:53,517   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-03T19:25:53,517   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-03T19:25:53,517   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-03T19:25:53,517   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-03T19:25:53,533   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-03T19:25:53,535   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-03T19:25:53,536   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-03T19:25:53,560   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-03T19:25:53,563   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-03T19:25:53,564   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-03T19:25:53,584   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-03T19:25:53,586   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-03T19:25:53,587   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-03T19:25:53,590   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-03T19:25:53,592   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-03T19:25:53,800   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-03T19:25:53,801   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-03T19:25:53,804   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-03T19:25:53,804   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,805   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,807   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,809   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,812   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,814   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,816   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,818   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,820   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,822   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,824   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,825   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,827   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,829   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,831   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,833   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,834   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,836   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,838   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,840   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,842   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,844   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,847   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,848   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,850   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,852   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,854   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,856   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,858   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,860   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,862   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,864   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,866   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,868   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,869   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,871   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,873   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,875   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,877   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,879   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,881   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,883   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,885   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,887   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,889   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,891   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,893   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,895   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,897   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,899   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,901   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,903   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,905   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,907   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,909   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,911   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,913   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,915   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,916   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,918   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,920   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,923   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,925   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,927   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,929   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,931   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,934   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,936   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,938   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,940   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,942   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,944   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,946   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,948   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,951   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,953   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,955   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,956   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,959   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,960   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,962   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,964   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,967   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,969   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,971   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,973   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,976   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,978   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,980   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,982   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,984   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,986   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,988   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,990   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,992   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,994   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,996   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:53,998   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,000   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,002   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,004   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,006   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,008   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,011   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,013   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,015   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,017   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,019   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,021   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,023   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,025   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,027   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,029   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,031   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,034   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,036   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,038   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,040   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,042   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,044   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,047   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,049   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,052   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,055   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,057   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,060   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,062   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,065   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,068   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,070   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,073   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,076   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,078   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,081   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,083   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,086   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,088   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,091   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,094   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,096   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,099   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,101   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,103   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,106   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,108   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,111   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,113   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,115   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,118   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,120   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,123   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,125   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,127   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,130   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,132   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,134   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,137   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,140   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,142   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,144   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,147   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,149   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,151   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,153   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,155   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,156   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,158   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,160   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,162   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,164   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,166   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,168   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,170   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,171   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,173   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,175   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-03T19:25:54,177   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-03T19:25:54,178   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-03T19:25:54,198   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-03T19:25:54,201   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-03T19:25:54,203   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-03T19:25:54,203   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-03T19:25:54,205   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-03T19:25:54,206   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-03T19:25:54,212   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-03T19:25:54,213   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-03T19:25:54,231   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-03T19:25:54,232   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-03T19:25:54,233   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-03T19:25:54,251   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-03T19:25:54,253   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-03T19:25:54,255   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-03T19:25:54,256   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-03T19:25:54,259   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-03T19:25:54,261   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-03T19:25:54,263   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-03T19:25:54,264   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-03T19:25:54,267   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-03T19:25:54,269   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-03T19:25:54,272   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-03T19:25:54,272   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-03T19:25:54,298   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-03T19:25:54,300   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-03T19:25:54,301   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-03T19:25:54,328   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-03T19:25:54,332   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-03T19:25:54,333   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-03T19:25:54,363   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-03T19:25:54,365   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-03T19:25:54,366   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-03T19:25:54,395   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-03T19:25:54,408   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-03T19:25:54,408   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.13'
2023-10-03T19:25:54,408   running build_ext
2023-10-03T19:25:54,419   building 'moleculekit.interactions.hbonds' extension
2023-10-03T19:25:54,420   creating build/temp.linux-armv7l-cpython-39
2023-10-03T19:25:54,420   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-03T19:25:54,421   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-03T19:25:54,421   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-03T19:25:54,422   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-03T19:25:54,746   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:25:54,746                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:25:54,746                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:25:54,746                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-03T19:25:54,746   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:25:54,747      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:25:54,747         |  ^~~~~~~
2023-10-03T19:26:20,791   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:26:21,113   building 'moleculekit.interactions.pipi' extension
2023-10-03T19:26:21,114   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-03T19:26:21,115   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-03T19:26:21,345   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:26:21,346                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:26:21,346                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:26:21,346                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-03T19:26:21,346   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:26:21,346      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:26:21,346         |  ^~~~~~~
2023-10-03T19:26:49,388   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:26:49,704   building 'moleculekit.interactions.cationpi' extension
2023-10-03T19:26:49,705   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-03T19:26:49,706   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-03T19:26:49,942   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:26:49,943                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:26:49,943                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:26:49,943                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-03T19:26:49,943   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:26:49,943      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:26:49,943         |  ^~~~~~~
2023-10-03T19:27:17,690   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:27:18,028   building 'moleculekit.interactions.sigmahole' extension
2023-10-03T19:27:18,029   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-03T19:27:18,029   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-03T19:27:18,262   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:27:18,263                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:27:18,263                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:27:18,263                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-03T19:27:18,263   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:27:18,263      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:27:18,263         |  ^~~~~~~
2023-10-03T19:27:45,399   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:27:45,719   building 'moleculekit.wrapping' extension
2023-10-03T19:27:45,720   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-03T19:27:45,721   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-03T19:27:45,964   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:27:45,964                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:27:45,964                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:27:45,964                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-03T19:27:45,964   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:27:45,964      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:27:45,965         |  ^~~~~~~
2023-10-03T19:28:09,785   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:28:10,000   building 'moleculekit.bondguesser_utils' extension
2023-10-03T19:28:10,001   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-03T19:28:10,002   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-03T19:28:10,241   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:28:10,241                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:28:10,241                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:28:10,241                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-03T19:28:10,242   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:28:10,242      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:28:10,242         |  ^~~~~~~
2023-10-03T19:28:11,862   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-03T19:28:11,862   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-03T19:28:11,862   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-03T19:28:11,862         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-03T19:28:11,863   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-03T19:28:11,863   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-03T19:28:11,863         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-03T19:28:11,864   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-03T19:28:11,864   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-03T19:28:11,864         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-03T19:28:11,865   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,865   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,865         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,866   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,866   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-03T19:28:11,866         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,867   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,867   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,867         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,868   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,868   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,868         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,869   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,869   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-03T19:28:11,869         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,870   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,870   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,870         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,871   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,871   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,871         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,872   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,872   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-03T19:28:11,872         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,873   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,873   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,873         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,874   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,874   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,874         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,875   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,875   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,875         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,876   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,876   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,876         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,877   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,877   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,877         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,878   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,878   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-03T19:28:11,878         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,879   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,879   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,879         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,880   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,880   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-03T19:28:11,880         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,881   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,881   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,881         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,882   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,882   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-03T19:28:11,882         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,883   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,883   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,883         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,884   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-03T19:28:11,884   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-03T19:28:11,884         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,904   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-03T19:28:11,904   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-03T19:28:11,904   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-03T19:28:11,904         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-03T19:28:11,905   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-03T19:28:11,905   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-03T19:28:11,905         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-03T19:28:34,848   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:28:35,148   building 'moleculekit.atomselect_utils' extension
2023-10-03T19:28:35,149   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-03T19:28:35,150   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-03T19:28:35,385   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:28:35,386                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:28:35,386                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:28:35,386                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-03T19:28:35,386   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:28:35,386      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:28:35,386         |  ^~~~~~~
2023-10-03T19:28:37,132   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-03T19:28:37,133   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-03T19:28:37,133   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-03T19:28:37,133         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-03T19:28:37,138   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-03T19:28:37,138   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-03T19:28:37,138   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-03T19:28:37,138         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-03T19:28:37,143   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-03T19:28:37,143   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-03T19:28:37,144   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-03T19:28:37,144         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-03T19:29:07,565   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:29:07,893   building 'moleculekit.distance_utils' extension
2023-10-03T19:29:07,893   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-03T19:29:07,894   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-03T19:29:08,157   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:29:08,158                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:29:08,158                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:29:08,158                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-03T19:29:08,158   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:29:08,158      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:29:08,158         |  ^~~~~~~
2023-10-03T19:29:40,261   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:29:40,593   building 'moleculekit.occupancy_utils' extension
2023-10-03T19:29:40,594   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-03T19:29:40,595   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-03T19:29:40,837   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:29:40,837                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:29:40,837                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:29:40,838                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-03T19:29:40,838   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:29:40,838      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:29:40,838         |  ^~~~~~~
2023-10-03T19:30:03,874   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:30:04,107   building 'moleculekit.xtc' extension
2023-10-03T19:30:04,107   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-03T19:30:04,108   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-03T19:30:04,109   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-03T19:30:04,348   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,348      66 |  "OK",
2023-10-03T19:30:04,348         |  ^~~~
2023-10-03T19:30:04,348   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,349      67 |  "Header",
2023-10-03T19:30:04,349         |  ^~~~~~~~
2023-10-03T19:30:04,349   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,349      68 |  "String",
2023-10-03T19:30:04,349         |  ^~~~~~~~
2023-10-03T19:30:04,349   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,350      69 |  "Double",
2023-10-03T19:30:04,350         |  ^~~~~~~~
2023-10-03T19:30:04,350   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,350      70 |  "Integer",
2023-10-03T19:30:04,350         |  ^~~~~~~~~
2023-10-03T19:30:04,351   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,351      71 |  "Float",
2023-10-03T19:30:04,351         |  ^~~~~~~
2023-10-03T19:30:04,351   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,351      72 |  "Unsigned integer",
2023-10-03T19:30:04,351         |  ^~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,352   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,352      73 |  "Compressed 3D coordinate",
2023-10-03T19:30:04,352         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,352   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,352      74 |  "Closing file",
2023-10-03T19:30:04,352         |  ^~~~~~~~~~~~~~
2023-10-03T19:30:04,353   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,353      75 |  "Magic number",
2023-10-03T19:30:04,353         |  ^~~~~~~~~~~~~~
2023-10-03T19:30:04,353   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,353      76 |  "Not enough memory",
2023-10-03T19:30:04,353         |  ^~~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,354   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,354      77 |  "End of file",
2023-10-03T19:30:04,354         |  ^~~~~~~~~~~~~
2023-10-03T19:30:04,354   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-03T19:30:04,354      78 |  "File not found"
2023-10-03T19:30:04,354         |  ^~~~~~~~~~~~~~~~
2023-10-03T19:30:04,363   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-03T19:30:04,363   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,363     459 |     while (size >= num && num_of_bits < 32)
2023-10-03T19:30:04,363         |            ~~~~~^~~~~~
2023-10-03T19:30:04,364   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-03T19:30:04,364   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,364     505 |     while (bytes[num_of_bytes] >= num)
2023-10-03T19:30:04,365         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-03T19:30:04,367   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-03T19:30:04,367   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,368     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-03T19:30:04,368         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,368   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,368     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-03T19:30:04,368         |               ~~^~~~~~~~~~~~~~
2023-10-03T19:30:04,369   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,369     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-03T19:30:04,369         |               ~~^~~~~~~~~~~~~~~~
2023-10-03T19:30:04,371   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-03T19:30:04,371   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,371     664 |   if (lastbits < num_of_bits)
2023-10-03T19:30:04,371         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-03T19:30:04,375   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-03T19:30:04,375   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,375     785 |  if(size3>xfp->buf1size)
2023-10-03T19:30:04,375         |     ~~~~~^~~~~~~~~~~~~~
2023-10-03T19:30:04,377   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,378     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-03T19:30:04,378         |                   ^
2023-10-03T19:30:04,381   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,381     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,381         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,381   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,382     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,382         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,382   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,382     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,382         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,383   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,383     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,383         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,384   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,384     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,384         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,384   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,384     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-03T19:30:04,385         |        ~~~~~~~~~^~~~~~~~
2023-10-03T19:30:04,385   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,386     756 |  int smallidx,  minidx, maxidx;
2023-10-03T19:30:04,386         |                 ^~~~~~
2023-10-03T19:30:04,386   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,386     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-03T19:30:04,386         |                         ^~~~~~
2023-10-03T19:30:04,386   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-03T19:30:04,387     763 |  int errval=1;
2023-10-03T19:30:04,387         |      ^~~~~~
2023-10-03T19:30:04,389   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-03T19:30:04,390   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,390    1011 |  if(size3>xfp->buf1size)
2023-10-03T19:30:04,390         |     ~~~~~^~~~~~~~~~~~~~
2023-10-03T19:30:04,392   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,392    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-03T19:30:04,393         |                     ~~~~~~~~^~~~~~~
2023-10-03T19:30:04,393   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,394    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-03T19:30:04,394         |                    ~~~~~~~~^~~~~~~
2023-10-03T19:30:04,395   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,395    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-03T19:30:04,395         |                    ~~~~~~~~^~~~~~~
2023-10-03T19:30:04,397   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,397    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-03T19:30:04,397         |                  ^
2023-10-03T19:30:04,398   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,398    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-03T19:30:04,398         |                   ^
2023-10-03T19:30:04,402   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,402    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-03T19:30:04,403         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,403   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,403    1001 |  int errval;
2023-10-03T19:30:04,403         |      ^~~~~~
2023-10-03T19:30:04,406   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-03T19:30:04,407   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,407    1316 |  if(size3>xfp->buf1size)
2023-10-03T19:30:04,407         |     ~~~~~^~~~~~~~~~~~~~
2023-10-03T19:30:04,409   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,409    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-03T19:30:04,410         |                   ^
2023-10-03T19:30:04,413   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,413    1289 |  int smallidx,  maxidx, minidx;
2023-10-03T19:30:04,413         |                         ^~~~~~
2023-10-03T19:30:04,413   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,413    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-03T19:30:04,414         |                         ^~~~~~
2023-10-03T19:30:04,414   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-03T19:30:04,414    1297 |  int errval=1;
2023-10-03T19:30:04,414         |      ^~~~~~
2023-10-03T19:30:04,416   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-03T19:30:04,417   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,417    1513 |  if(size3>xfp->buf1size) {
2023-10-03T19:30:04,417         |     ~~~~~^~~~~~~~~~~~~~
2023-10-03T19:30:04,421   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,422    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-03T19:30:04,422         |                  ^
2023-10-03T19:30:04,422   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-03T19:30:04,423    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-03T19:30:04,423         |                   ^
2023-10-03T19:30:04,427   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-03T19:30:04,427    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-03T19:30:04,427         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-03T19:30:04,427   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-03T19:30:04,428    1504 |  int errval=1;
2023-10-03T19:30:04,428         |      ^~~~~~
2023-10-03T19:30:06,648   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-03T19:30:06,905   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-03T19:30:07,752   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-03T19:30:07,752   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-03T19:30:07,752     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-03T19:30:07,753         |      ^~~
2023-10-03T19:30:07,759   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-03T19:30:07,759   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-03T19:30:07,759     418 |  int nf3 = nframes * 3;
2023-10-03T19:30:07,759         |      ^~~
2023-10-03T19:30:07,764   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-03T19:30:07,764   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-03T19:30:07,764     491 |  int reading_index = 0;
2023-10-03T19:30:07,764         |      ^~~~~~~~~~~~~
2023-10-03T19:30:07,764   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-03T19:30:07,765     492 |  int writing_index = 0;
2023-10-03T19:30:07,765         |      ^~~~~~~~~~~~~
2023-10-03T19:30:08,528   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-03T19:30:08,986   In file included from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-03T19:30:08,986                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-03T19:30:08,987                    from /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-03T19:30:08,987                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-03T19:30:08,987   /tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-03T19:30:08,987      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-03T19:30:08,987         |  ^~~~~~~
2023-10-03T19:30:29,127   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:30:29,459   building 'moleculekit.tmalign' extension
2023-10-03T19:30:29,461   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-03T19:30:29,461   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-03T19:30:29,463   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-03T19:30:58,954   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vimvpn21/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-03T19:31:17,487   In file included from /usr/include/c++/10/vector:72,
2023-10-03T19:31:17,487                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-03T19:31:17,488   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-03T19:31:17,488   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-03T19:31:17,488     426 |       vector<_Tp, _Alloc>::
2023-10-03T19:31:17,488         |       ^~~~~~~~~~~~~~~~~~~
2023-10-03T19:31:18,068   In file included from /usr/include/c++/10/vector:67,
2023-10-03T19:31:18,068                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-03T19:31:18,068   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-03T19:31:18,068   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-03T19:31:18,069    1198 |    _M_realloc_insert(end(), __x);
2023-10-03T19:31:18,069         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-03T19:31:18,069   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-03T19:31:18,069    1198 |    _M_realloc_insert(end(), __x);
2023-10-03T19:31:18,069         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-03T19:31:18,070   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-03T19:31:18,070    1198 |    _M_realloc_insert(end(), __x);
2023-10-03T19:31:18,070         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-03T19:31:20,501   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-03T19:31:20,944   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-03T19:31:20,944   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.13'
2023-10-03T19:31:20,944   installing to build/bdist.linux-armv7l/wheel
2023-10-03T19:31:20,944   running install
2023-10-03T19:31:20,970   running install_lib
2023-10-03T19:31:20,976   creating build/bdist.linux-armv7l
2023-10-03T19:31:20,976   creating build/bdist.linux-armv7l/wheel
2023-10-03T19:31:20,978   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:20,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:20,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:20,984   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-03T19:31:20,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-03T19:31:21,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-03T19:31:21,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,032   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-03T19:31:21,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-03T19:31:21,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-03T19:31:21,059   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-03T19:31:21,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-03T19:31:21,249   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-03T19:31:21,253   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-03T19:31:21,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-03T19:31:21,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-03T19:31:21,571   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-03T19:31:21,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-03T19:31:21,574   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-03T19:31:21,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,615   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-03T19:31:21,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-03T19:31:21,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-03T19:31:21,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-03T19:31:21,626   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-03T19:31:21,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-03T19:31:21,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-03T19:31:21,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-03T19:31:21,658   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-03T19:31:21,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-03T19:31:21,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-03T19:31:21,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-03T19:31:21,665   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-03T19:31:21,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-03T19:31:21,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-03T19:31:21,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-03T19:31:21,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,699   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,701   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-03T19:31:21,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-03T19:31:21,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-03T19:31:21,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,727   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-03T19:31:21,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-03T19:31:21,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-03T19:31:21,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,831   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-03T19:31:21,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-03T19:31:21,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-03T19:31:21,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-03T19:31:21,880   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-03T19:31:21,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-03T19:31:21,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-03T19:31:21,904   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-03T19:31:21,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-03T19:31:21,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-03T19:31:21,940   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-03T19:31:21,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-03T19:31:21,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-03T19:31:21,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-03T19:31:21,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-03T19:31:21,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:21,964   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-03T19:31:21,966   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-03T19:31:21,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-03T19:31:21,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-03T19:31:21,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-03T19:31:21,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-03T19:31:21,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-03T19:31:21,980   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-03T19:31:21,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-03T19:31:21,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-03T19:31:21,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-03T19:31:21,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-03T19:31:22,000   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-03T19:31:22,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-03T19:31:22,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-03T19:31:22,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,228   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,236   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-03T19:31:22,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-03T19:31:22,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-03T19:31:22,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-03T19:31:22,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-03T19:31:22,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-03T19:31:22,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,255   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-03T19:31:22,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-03T19:31:22,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-03T19:31:22,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,291   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,311   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-03T19:31:22,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-03T19:31:22,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-03T19:31:22,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-03T19:31:22,327   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-03T19:31:22,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-03T19:31:22,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-03T19:31:22,357   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-03T19:31:22,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-03T19:31:22,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-03T19:31:22,363   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-03T19:31:22,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-03T19:31:22,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,392   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-03T19:31:22,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-03T19:31:22,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-03T19:31:22,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-03T19:31:22,563   running install_egg_info
2023-10-03T19:31:22,568   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.13-py3.9.egg-info
2023-10-03T19:31:22,581   running install_scripts
2023-10-03T19:31:22,630   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.13.dist-info/WHEEL
2023-10-03T19:31:22,634   creating '/tmp/pip-wheel-4qkj98gp/.tmp-jjh1w9u3/moleculekit-1.7.13-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-03T19:31:22,637   adding 'moleculekit/__init__.py'
2023-10-03T19:31:22,639   adding 'moleculekit/_version.py'
2023-10-03T19:31:22,641   adding 'moleculekit/align.py'
2023-10-03T19:31:22,999   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:23,011   adding 'moleculekit/bondguesser.py'
2023-10-03T19:31:23,252   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:23,261   adding 'moleculekit/config.py'
2023-10-03T19:31:23,263   adding 'moleculekit/dihedral.py'
2023-10-03T19:31:23,265   adding 'moleculekit/distance.py'
2023-10-03T19:31:23,572   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:23,584   adding 'moleculekit/home.py'
2023-10-03T19:31:23,585   adding 'moleculekit/logging.ini'
2023-10-03T19:31:23,599   adding 'moleculekit/molecule.py'
2023-10-03T19:31:23,827   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:23,837   adding 'moleculekit/opm.py'
2023-10-03T19:31:23,839   adding 'moleculekit/periodictable.py'
2023-10-03T19:31:23,841   adding 'moleculekit/pymolgraphics.py'
2023-10-03T19:31:23,843   adding 'moleculekit/rcsb.py'
2023-10-03T19:31:23,844   adding 'moleculekit/rdkitintegration.py'
2023-10-03T19:31:23,857   adding 'moleculekit/readers.py'
2023-10-03T19:31:24,464   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:24,489   adding 'moleculekit/util.py'
2023-10-03T19:31:24,490   adding 'moleculekit/version.py'
2023-10-03T19:31:24,492   adding 'moleculekit/viewer.py'
2023-10-03T19:31:24,494   adding 'moleculekit/vmd_wrapper'
2023-10-03T19:31:24,496   adding 'moleculekit/vmdgraphics.py'
2023-10-03T19:31:24,498   adding 'moleculekit/vmdviewer.py'
2023-10-03T19:31:24,731   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:24,744   adding 'moleculekit/writers.py'
2023-10-03T19:31:25,015   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:25,025   adding 'moleculekit/atomselect/__init__.py'
2023-10-03T19:31:25,027   adding 'moleculekit/atomselect/analyze.py'
2023-10-03T19:31:25,029   adding 'moleculekit/atomselect/atomselect.py'
2023-10-03T19:31:25,032   adding 'moleculekit/atomselect/languageparser.py'
2023-10-03T19:31:25,137   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-03T19:31:25,149   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-03T19:31:25,241   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-03T19:31:25,250   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-03T19:31:25,349   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-03T19:31:25,359   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-03T19:31:25,362   adding 'moleculekit/interactions/__init__.py'
2023-10-03T19:31:25,648   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:25,916   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:25,928   adding 'moleculekit/interactions/interactions.py'
2023-10-03T19:31:26,211   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:26,499   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-03T19:31:26,601   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-03T19:31:26,610   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-03T19:31:26,702   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-03T19:31:26,711   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-03T19:31:26,803   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-03T19:31:26,813   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-03T19:31:26,905   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-03T19:31:26,914   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-03T19:31:27,002   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-03T19:31:27,011   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-03T19:31:27,012   adding 'moleculekit/pdbx/__init__.py'
2023-10-03T19:31:27,016   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-03T19:31:27,019   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-03T19:31:27,021   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-03T19:31:27,022   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-03T19:31:27,024   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-03T19:31:27,026   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-03T19:31:27,027   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-03T19:31:27,028   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-03T19:31:27,030   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-03T19:31:27,031   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-03T19:31:27,033   adding 'moleculekit/ply/__init__.py'
2023-10-03T19:31:27,037   adding 'moleculekit/ply/lex.py'
2023-10-03T19:31:27,049   adding 'moleculekit/ply/yacc.py'
2023-10-03T19:31:27,052   adding 'moleculekit/projections/__init__.py'
2023-10-03T19:31:27,054   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-03T19:31:27,057   adding 'moleculekit/projections/metricdihedral.py'
2023-10-03T19:31:27,061   adding 'moleculekit/projections/metricdistance.py'
2023-10-03T19:31:27,063   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-03T19:31:27,065   adding 'moleculekit/projections/metricgyration.py'
2023-10-03T19:31:27,069   adding 'moleculekit/projections/metricplumed2.py'
2023-10-03T19:31:27,070   adding 'moleculekit/projections/metricrmsd.py'
2023-10-03T19:31:27,073   adding 'moleculekit/projections/metricsasa.py'
2023-10-03T19:31:27,074   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-03T19:31:27,076   adding 'moleculekit/projections/metricshell.py'
2023-10-03T19:31:27,078   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-03T19:31:27,079   adding 'moleculekit/projections/metrictmscore.py'
2023-10-03T19:31:27,081   adding 'moleculekit/projections/projection.py'
2023-10-03T19:31:27,082   adding 'moleculekit/projections/util.py'
2023-10-03T19:31:27,084   adding 'moleculekit/share/ALA.cif'
2023-10-03T19:31:27,086   adding 'moleculekit/share/backbone.cif'
2023-10-03T19:31:28,394   adding 'moleculekit/share/opm_sequences.json'
2023-10-03T19:31:28,481   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-03T19:31:28,492   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-03T19:31:28,494   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-03T19:31:28,497   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-03T19:31:28,499   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-03T19:31:28,501   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-03T19:31:28,503   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-03T19:31:28,721   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-03T19:31:28,723   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-03T19:31:28,724   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-03T19:31:28,725   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-03T19:31:28,726   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-03T19:31:28,728   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-03T19:31:28,730   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-03T19:31:28,731   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-03T19:31:28,733   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-03T19:31:28,735   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-03T19:31:28,736   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-03T19:31:28,737   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-03T19:31:28,739   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-03T19:31:28,741   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-03T19:31:28,743   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-03T19:31:28,745   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-03T19:31:28,746   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-03T19:31:28,748   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-03T19:31:28,749   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-03T19:31:28,750   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-03T19:31:28,752   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-03T19:31:28,753   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-03T19:31:28,754   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-03T19:31:28,755   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-03T19:31:28,757   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-03T19:31:28,758   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-03T19:31:28,759   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-03T19:31:28,761   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-03T19:31:28,762   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-03T19:31:28,763   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-03T19:31:28,765   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-03T19:31:28,766   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-03T19:31:28,767   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-03T19:31:28,769   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-03T19:31:28,770   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-03T19:31:28,772   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-03T19:31:28,774   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-03T19:31:28,983   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-03T19:31:28,985   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-03T19:31:28,987   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-03T19:31:28,990   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-03T19:31:28,993   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-03T19:31:28,998   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-03T19:31:29,003   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-03T19:31:29,008   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-03T19:31:29,012   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-03T19:31:29,014   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-03T19:31:29,017   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-03T19:31:29,020   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-03T19:31:29,023   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-03T19:31:29,026   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-03T19:31:29,029   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-03T19:31:29,032   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-03T19:31:29,035   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-03T19:31:29,038   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-03T19:31:29,041   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-03T19:31:29,044   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-03T19:31:29,047   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-03T19:31:29,050   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-03T19:31:29,053   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-03T19:31:29,056   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-03T19:31:29,059   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-03T19:31:29,062   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-03T19:31:29,066   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-03T19:31:29,071   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-03T19:31:29,076   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-03T19:31:29,081   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-03T19:31:29,083   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-03T19:31:29,085   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-03T19:31:29,086   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-03T19:31:29,087   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-03T19:31:29,088   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-03T19:31:29,089   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-03T19:31:29,091   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-03T19:31:29,092   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-03T19:31:29,093   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-03T19:31:29,094   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-03T19:31:29,096   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-03T19:31:29,097   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-03T19:31:29,098   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-03T19:31:29,099   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-03T19:31:29,101   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-03T19:31:29,102   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-03T19:31:29,103   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-03T19:31:29,104   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-03T19:31:29,105   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-03T19:31:29,107   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-03T19:31:29,108   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-03T19:31:29,109   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-03T19:31:29,110   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-03T19:31:29,112   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-03T19:31:29,113   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-03T19:31:29,114   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-03T19:31:29,115   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-03T19:31:29,117   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-03T19:31:29,118   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-03T19:31:29,119   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-03T19:31:29,120   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-03T19:31:29,121   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-03T19:31:29,123   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-03T19:31:29,124   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-03T19:31:29,125   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-03T19:31:29,126   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-03T19:31:29,127   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-03T19:31:29,129   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-03T19:31:29,130   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-03T19:31:29,131   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-03T19:31:29,132   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-03T19:31:29,134   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-03T19:31:29,135   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-03T19:31:29,138   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-03T19:31:29,139   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-03T19:31:29,141   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-03T19:31:29,142   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-03T19:31:29,144   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-03T19:31:29,145   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-03T19:31:29,146   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-03T19:31:29,148   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-03T19:31:29,150   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-03T19:31:29,151   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-03T19:31:29,152   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-03T19:31:29,153   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-03T19:31:29,155   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-03T19:31:29,156   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-03T19:31:29,157   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-03T19:31:29,159   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-03T19:31:29,160   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-03T19:31:29,161   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-03T19:31:29,162   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-03T19:31:29,164   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-03T19:31:29,383   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-03T19:31:29,385   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-03T19:31:29,387   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-03T19:31:29,389   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-03T19:31:29,392   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-03T19:31:29,394   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-03T19:31:29,397   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-03T19:31:29,399   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-03T19:31:29,401   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-03T19:31:29,404   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-03T19:31:29,406   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-03T19:31:29,409   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-03T19:31:29,411   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-03T19:31:29,413   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-03T19:31:29,416   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-03T19:31:29,418   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-03T19:31:29,421   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-03T19:31:29,422   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-03T19:31:29,425   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-03T19:31:29,426   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-03T19:31:29,428   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-03T19:31:29,430   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-03T19:31:29,432   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-03T19:31:29,433   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-03T19:31:29,435   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-03T19:31:29,437   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-03T19:31:29,439   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-03T19:31:29,441   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-03T19:31:29,442   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-03T19:31:29,444   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-03T19:31:29,446   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-03T19:31:29,448   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-03T19:31:29,449   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-03T19:31:29,451   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-03T19:31:29,453   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-03T19:31:29,455   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-03T19:31:29,456   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-03T19:31:29,458   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-03T19:31:29,460   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-03T19:31:29,463   adding 'moleculekit/smallmol/__init__.py'
2023-10-03T19:31:29,471   adding 'moleculekit/smallmol/smallmol.py'
2023-10-03T19:31:29,475   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-03T19:31:29,478   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-03T19:31:29,480   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-03T19:31:29,484   adding 'moleculekit/smallmol/util.py'
2023-10-03T19:31:29,486   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-03T19:31:29,489   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-03T19:31:29,494   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-03T19:31:29,498   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-03T19:31:29,598   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-03T19:31:29,607   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-03T19:31:29,608   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-03T19:31:29,610   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-03T19:31:29,628   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-03T19:31:29,631   adding 'moleculekit/tools/__init__.py'
2023-10-03T19:31:29,633   adding 'moleculekit/tools/atomtyper.py'
2023-10-03T19:31:29,635   adding 'moleculekit/tools/autosegment.py'
2023-10-03T19:31:29,637   adding 'moleculekit/tools/crystalpacking.py'
2023-10-03T19:31:29,640   adding 'moleculekit/tools/detect.py'
2023-10-03T19:31:29,641   adding 'moleculekit/tools/docking.py'
2023-10-03T19:31:29,643   adding 'moleculekit/tools/graphalignment.py'
2023-10-03T19:31:29,645   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-03T19:31:29,647   adding 'moleculekit/tools/moleculechecks.py'
2023-10-03T19:31:29,653   adding 'moleculekit/tools/preparation.py'
2023-10-03T19:31:29,655   adding 'moleculekit/tools/preparation_customres.py'
2023-10-03T19:31:29,657   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-03T19:31:29,660   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-03T19:31:29,662   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-03T19:31:29,663   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-03T19:31:29,753   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-03T19:31:29,762   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-03T19:31:29,853   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-03T19:31:29,866   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-03T19:31:29,872   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-03T19:31:29,881   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-03T19:31:29,884   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-03T19:31:29,888   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-03T19:31:29,898   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-03T19:31:29,901   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-03T19:31:29,903   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-03T19:31:29,905   adding 'moleculekit-1.7.13.dist-info/LICENSE'
2023-10-03T19:31:29,907   adding 'moleculekit-1.7.13.dist-info/METADATA'
2023-10-03T19:31:29,908   adding 'moleculekit-1.7.13.dist-info/WHEEL'
2023-10-03T19:31:29,909   adding 'moleculekit-1.7.13.dist-info/top_level.txt'
2023-10-03T19:31:29,913   adding 'moleculekit-1.7.13.dist-info/RECORD'
2023-10-03T19:31:30,211   removing build/bdist.linux-armv7l/wheel
2023-10-03T19:31:30,520   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-03T19:31:30,796   Created wheel for moleculekit: filename=moleculekit-1.7.13-cp39-cp39-linux_armv7l.whl size=12538158 sha256=ef6675312166b400db2a57d16aa0f0fd79a02e803e7f6b4fd75497bffcfa4b0a
2023-10-03T19:31:30,797   Stored in directory: /tmp/pip-ephem-wheel-cache-7i9ilhjh/wheels/1b/f7/c5/b0dbde6afe541173f8313c90fd5472fa18d38118726d5ebb10
2023-10-03T19:31:30,822 Successfully built moleculekit
2023-10-03T19:31:31,143 Removed build tracker: '/tmp/pip-build-tracker-nptsm8tl'