2023-10-04T17:54:26,749 Created temporary directory: /tmp/pip-build-tracker-bqs87fk3
2023-10-04T17:54:26,750 Initialized build tracking at /tmp/pip-build-tracker-bqs87fk3
2023-10-04T17:54:26,751 Created build tracker: /tmp/pip-build-tracker-bqs87fk3
2023-10-04T17:54:26,751 Entered build tracker: /tmp/pip-build-tracker-bqs87fk3
2023-10-04T17:54:26,751 Created temporary directory: /tmp/pip-wheel-5bq0sjub
2023-10-04T17:54:26,755 Created temporary directory: /tmp/pip-ephem-wheel-cache-gy5n5f6y
2023-10-04T17:54:26,779 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T17:54:26,782 2 location(s) to search for versions of moleculekit:
2023-10-04T17:54:26,782 * https://pypi.org/simple/moleculekit/
2023-10-04T17:54:26,782 * https://www.piwheels.org/simple/moleculekit/
2023-10-04T17:54:26,783 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-04T17:54:26,783 Getting page https://pypi.org/simple/moleculekit/
2023-10-04T17:54:26,785 Found index url https://pypi.org/simple/
2023-10-04T17:54:26,839 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-04T17:54:26,877   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,878   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-04T17:54:26,878   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,878   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-04T17:54:26,879   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,879   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-04T17:54:26,879   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,879   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-04T17:54:26,880   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,880   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-04T17:54:26,880   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,880   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-04T17:54:26,881   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,881   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-04T17:54:26,881   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,881   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-04T17:54:26,882   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,882   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-04T17:54:26,882   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,882   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-04T17:54:26,883   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,883   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-04T17:54:26,883   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,883   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-04T17:54:26,884   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,884   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-04T17:54:26,884   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,884   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-04T17:54:26,884   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,885   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-04T17:54:26,885   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,885   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-04T17:54:26,885   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,886   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-04T17:54:26,886   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,886   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-04T17:54:26,886   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,887   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-04T17:54:26,887   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,887   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-04T17:54:26,887   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,887   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-04T17:54:26,888   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,888   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-04T17:54:26,888   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,888   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-04T17:54:26,889   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,889   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-04T17:54:26,889   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,889   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-04T17:54:26,890   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,890   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-04T17:54:26,890   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,890   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-04T17:54:26,890   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,891   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-04T17:54:26,891   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,891   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-04T17:54:26,891   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,892   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-04T17:54:26,892   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,892   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-04T17:54:26,892   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,893   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-04T17:54:26,893   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T17:54:26,893   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-10-04T17:54:26,916   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-10-04T17:54:26,917   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-10-04T17:54:26,917   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-10-04T17:54:26,918   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-10-04T17:54:26,918   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-10-04T17:54:26,918   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-10-04T17:54:26,919   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-10-04T17:54:26,919   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-10-04T17:54:26,919   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
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2023-10-04T17:54:26,921   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-10-04T17:54:26,927   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-10-04T17:54:26,928   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-10-04T17:54:26,928   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-10-04T17:54:26,929   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
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2023-10-04T17:54:26,931   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
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2023-10-04T17:54:26,934   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-10-04T17:54:26,935   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-04T17:54:26,935   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-04T17:54:26,936   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-04T17:54:26,936   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-04T17:54:26,937   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-04T17:54:26,937   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-04T17:54:26,938   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-04T17:54:26,938   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-04T17:54:26,939   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-04T17:54:26,939   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-04T17:54:26,940   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-04T17:54:26,941   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-04T17:54:26,941   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-04T17:54:26,942   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-04T17:54:26,942   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-04T17:54:26,943 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-04T17:54:26,943 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-04T17:54:26,944 Found index url https://www.piwheels.org/simple/
2023-10-04T17:54:27,019 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-04T17:54:27,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T17:54:27,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T17:54:27,136 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-04T17:54:27,136 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-04T17:54:27,176 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-04T17:54:27,193 Collecting moleculekit==1.7.14
2023-10-04T17:54:27,195   Created temporary directory: /tmp/pip-unpack-jg9v434i
2023-10-04T17:54:27,340   Downloading moleculekit-1.7.14.tar.gz (6.2 MB)
2023-10-04T17:54:29,400   Added moleculekit==1.7.14 from https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz to build tracker '/tmp/pip-build-tracker-bqs87fk3'
2023-10-04T17:54:29,408   Created temporary directory: /tmp/pip-build-env-7fxvzx29
2023-10-04T17:54:29,418   Installing build dependencies: started
2023-10-04T17:54:29,419   Running command pip subprocess to install build dependencies
2023-10-04T17:54:30,554   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-04T17:54:31,076   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T17:54:32,649   Collecting setuptools
2023-10-04T17:54:32,715     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-04T17:54:34,060   Collecting numpy>=1.18.5
2023-10-04T17:54:35,432     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-04T17:54:37,707   Collecting Cython>=0.29.21
2023-10-04T17:54:38,461     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-04T17:54:38,809   Collecting toml
2023-10-04T17:54:38,826     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-04T17:54:38,934   Collecting versioneer[toml]==0.28
2023-10-04T17:54:38,946     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-04T17:54:38,967        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.2 MB/s eta 0:00:00
2023-10-04T17:54:39,099   Collecting tomli (from versioneer[toml]==0.28)
2023-10-04T17:54:39,116     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-04T17:54:40,870   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-04T17:54:40,905     Creating /tmp/pip-build-env-7fxvzx29/overlay/bin
2023-10-04T17:54:40,907     changing mode of /tmp/pip-build-env-7fxvzx29/overlay/bin/versioneer to 755
2023-10-04T17:54:50,600     changing mode of /tmp/pip-build-env-7fxvzx29/overlay/bin/f2py to 755
2023-10-04T17:54:53,922     changing mode of /tmp/pip-build-env-7fxvzx29/overlay/bin/cygdb to 755
2023-10-04T17:54:53,924     changing mode of /tmp/pip-build-env-7fxvzx29/overlay/bin/cython to 755
2023-10-04T17:54:53,926     changing mode of /tmp/pip-build-env-7fxvzx29/overlay/bin/cythonize to 755
2023-10-04T17:54:53,952   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-04T17:54:53,952   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-04T17:54:53,953   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-04T17:54:54,558   Installing build dependencies: finished with status 'done'
2023-10-04T17:54:54,562   Getting requirements to build wheel: started
2023-10-04T17:54:54,563   Running command Getting requirements to build wheel
2023-10-04T17:55:32,697   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,698   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,698   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-04T17:55:32,699   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T17:55:32,700   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-04T17:55:32,700   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-04T17:55:32,700   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-04T17:55:32,700   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-04T17:55:32,700   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-04T17:55:32,700   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-04T17:55:32,700   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-04T17:55:32,700   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-04T17:55:32,701   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-04T17:55:32,701   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-04T17:55:32,701   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-04T17:55:32,980   running egg_info
2023-10-04T17:55:32,987   writing moleculekit.egg-info/PKG-INFO
2023-10-04T17:55:32,990   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T17:55:32,992   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T17:55:32,993   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T17:55:33,017   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,017   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,017   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,017   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,017   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,018   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,019   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:33,020   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T17:55:34,256   Running command pip subprocess to install backend dependencies
2023-10-04T17:55:35,503   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
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2023-10-04T17:55:36,417   Collecting wheel
2023-10-04T17:55:36,434     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
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2023-10-04T17:55:38,424   Created temporary directory: /tmp/pip-modern-metadata-zhw0yn6h
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2023-10-04T17:55:41,056   reading manifest file '/tmp/pip-modern-metadata-zhw0yn6h/moleculekit.egg-info/SOURCES.txt'
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2023-10-04T17:55:41,284   no previously-included directories found matching 'moleculekit/test-data'
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2023-10-04T17:55:41,502   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-04T17:55:41,509   Source in /tmp/pip-wheel-5bq0sjub/moleculekit_552cbcb0b6164abdaee7ce89f3686073 has version 1.7.14, which satisfies requirement moleculekit==1.7.14 from https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz
2023-10-04T17:55:41,509   Removed moleculekit==1.7.14 from https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz from build tracker '/tmp/pip-build-tracker-bqs87fk3'
2023-10-04T17:55:41,515 Created temporary directory: /tmp/pip-unpack-4og8w_5p
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2023-10-04T17:55:41,524 Building wheels for collected packages: moleculekit
2023-10-04T17:55:41,528   Created temporary directory: /tmp/pip-wheel-eiuiqyxk
2023-10-04T17:55:41,528   Destination directory: /tmp/pip-wheel-eiuiqyxk
2023-10-04T17:55:41,530   Building wheel for moleculekit (pyproject.toml): started
2023-10-04T17:55:41,531   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-04T17:55:43,743   running bdist_wheel
2023-10-04T17:55:43,759   running build
2023-10-04T17:55:43,759   running build_py
2023-10-04T17:55:43,767   creating build
2023-10-04T17:55:43,767   creating build/lib.linux-armv7l-cpython-39
2023-10-04T17:55:43,768   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,769   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,772   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,774   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,775   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,777   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,779   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,781   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,785   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,786   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,788   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,793   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,795   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,797   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,798   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,800   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,802   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,804   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,807   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,808   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,810   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,812   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:43,814   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T17:55:43,815   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T17:55:43,817   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T17:55:43,818   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T17:55:43,819   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T17:55:43,822   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T17:55:43,823   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T17:55:43,827   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T17:55:43,829   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T17:55:43,832   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,833   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,835   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,837   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,839   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,841   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,843   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,846   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,848   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,850   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,852   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,855   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,856   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,858   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,860   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,862   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T17:55:43,865   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T17:55:43,865   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T17:55:43,867   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T17:55:43,869   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T17:55:43,871   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T17:55:43,874   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,875   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,876   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,878   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,881   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,884   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,886   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,888   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,890   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,892   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,894   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,896   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,899   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,901   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T17:55:43,903   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,904   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,906   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,909   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,911   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,913   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,915   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T17:55:43,918   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T17:55:43,918   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T17:55:43,920   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T17:55:43,923   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T17:55:43,926   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T17:55:43,929   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T17:55:43,929   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T17:55:43,931   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T17:55:43,933   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T17:55:43,935   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T17:55:43,937   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T17:55:43,938   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T17:55:43,939   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T17:55:43,942   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T17:55:43,943   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T17:55:43,944   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T17:55:43,947   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T17:55:43,948   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T17:55:43,949   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T17:55:43,951   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T17:55:43,953   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T17:55:43,955   running egg_info
2023-10-04T17:55:43,961   writing moleculekit.egg-info/PKG-INFO
2023-10-04T17:55:43,964   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T17:55:43,965   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T17:55:43,966   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T17:55:43,979   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,980   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,981   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,982   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,983   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,984   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,985   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,986   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,987   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,987   dependency /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T17:55:43,992   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T17:55:44,001   reading manifest template 'MANIFEST.in'
2023-10-04T17:55:44,216   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T17:55:44,217   no previously-included directories found matching 'moleculekit/tests'
2023-10-04T17:55:44,218   no previously-included directories found matching 'package'
2023-10-04T17:55:44,219   adding license file 'LICENSE'
2023-10-04T17:55:44,236   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T17:55:44,245   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-04T17:55:44,246   !!

2023-10-04T17:55:44,246           ********************************************************************************
2023-10-04T17:55:44,246           ############################
2023-10-04T17:55:44,246           # Package would be ignored #
2023-10-04T17:55:44,246           ############################
2023-10-04T17:55:44,246           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-04T17:55:44,246           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,247           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,247           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-04T17:55:44,247           to the `packages` configuration field.

2023-10-04T17:55:44,247           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,247           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,247           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,248           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,248           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,248           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-04T17:55:44,248           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-04T17:55:44,248           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,248           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,249           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,249           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,249           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,249           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,249                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,250                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,250                 directory, all directories are treated like packages.
2023-10-04T17:55:44,250           ********************************************************************************

2023-10-04T17:55:44,250   !!
2023-10-04T17:55:44,250     check.warn(importable)
2023-10-04T17:55:44,250   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-04T17:55:44,250   !!

2023-10-04T17:55:44,251           ********************************************************************************
2023-10-04T17:55:44,251           ############################
2023-10-04T17:55:44,251           # Package would be ignored #
2023-10-04T17:55:44,251           ############################
2023-10-04T17:55:44,251           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-04T17:55:44,251           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,251           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,252           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-04T17:55:44,252           to the `packages` configuration field.

2023-10-04T17:55:44,252           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,252           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,252           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,252           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,253           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,253           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-04T17:55:44,253           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-04T17:55:44,253           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,253           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,253           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,254           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,254           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,254           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,254                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,254                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,254                 directory, all directories are treated like packages.
2023-10-04T17:55:44,255           ********************************************************************************

2023-10-04T17:55:44,255   !!
2023-10-04T17:55:44,255     check.warn(importable)
2023-10-04T17:55:44,255   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-04T17:55:44,255   !!

2023-10-04T17:55:44,255           ********************************************************************************
2023-10-04T17:55:44,255           ############################
2023-10-04T17:55:44,256           # Package would be ignored #
2023-10-04T17:55:44,256           ############################
2023-10-04T17:55:44,256           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-04T17:55:44,256           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,256           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,256           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-04T17:55:44,256           to the `packages` configuration field.

2023-10-04T17:55:44,256           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,257           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,257           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,257           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,257           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,257           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-04T17:55:44,257           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-04T17:55:44,258           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,258           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,258           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,258           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,258           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,259           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,259                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,259                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,259                 directory, all directories are treated like packages.
2023-10-04T17:55:44,259           ********************************************************************************

2023-10-04T17:55:44,259   !!
2023-10-04T17:55:44,259     check.warn(importable)
2023-10-04T17:55:44,259   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-04T17:55:44,260   !!

2023-10-04T17:55:44,260           ********************************************************************************
2023-10-04T17:55:44,260           ############################
2023-10-04T17:55:44,260           # Package would be ignored #
2023-10-04T17:55:44,260           ############################
2023-10-04T17:55:44,260           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-04T17:55:44,260           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,261           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,261           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-04T17:55:44,261           to the `packages` configuration field.

2023-10-04T17:55:44,261           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,261           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,261           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,261           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,262           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,262           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-04T17:55:44,262           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-04T17:55:44,262           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,262           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,262           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,263           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,263           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,263           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,263                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,263                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,263                 directory, all directories are treated like packages.
2023-10-04T17:55:44,264           ********************************************************************************

2023-10-04T17:55:44,264   !!
2023-10-04T17:55:44,264     check.warn(importable)
2023-10-04T17:55:44,264   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-04T17:55:44,264   !!

2023-10-04T17:55:44,264           ********************************************************************************
2023-10-04T17:55:44,264           ############################
2023-10-04T17:55:44,265           # Package would be ignored #
2023-10-04T17:55:44,265           ############################
2023-10-04T17:55:44,265           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-04T17:55:44,265           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,265           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,265           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-04T17:55:44,265           to the `packages` configuration field.

2023-10-04T17:55:44,266           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,266           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,266           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,266           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,266           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,266           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-04T17:55:44,267           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-04T17:55:44,267           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,267           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,267           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,267           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,267           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,268           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,268                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,268                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,268                 directory, all directories are treated like packages.
2023-10-04T17:55:44,268           ********************************************************************************

2023-10-04T17:55:44,268   !!
2023-10-04T17:55:44,269     check.warn(importable)
2023-10-04T17:55:44,269   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-04T17:55:44,269   !!

2023-10-04T17:55:44,269           ********************************************************************************
2023-10-04T17:55:44,269           ############################
2023-10-04T17:55:44,269           # Package would be ignored #
2023-10-04T17:55:44,269           ############################
2023-10-04T17:55:44,269           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-04T17:55:44,270           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,270           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,270           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-04T17:55:44,270           to the `packages` configuration field.

2023-10-04T17:55:44,270           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,270           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,271           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,271           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,271           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,271           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-04T17:55:44,271           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-04T17:55:44,271           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,272           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,272           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,272           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,272           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,272           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,273                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,273                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,273                 directory, all directories are treated like packages.
2023-10-04T17:55:44,273           ********************************************************************************

2023-10-04T17:55:44,273   !!
2023-10-04T17:55:44,273     check.warn(importable)
2023-10-04T17:55:44,273   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-04T17:55:44,273   !!

2023-10-04T17:55:44,274           ********************************************************************************
2023-10-04T17:55:44,274           ############################
2023-10-04T17:55:44,274           # Package would be ignored #
2023-10-04T17:55:44,274           ############################
2023-10-04T17:55:44,274           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-04T17:55:44,274           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,274           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,275           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-04T17:55:44,275           to the `packages` configuration field.

2023-10-04T17:55:44,275           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,275           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,275           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,275           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,275           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,276           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-04T17:55:44,276           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-04T17:55:44,276           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,276           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,276           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,276           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,277           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,277           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,277                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,277                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,277                 directory, all directories are treated like packages.
2023-10-04T17:55:44,277           ********************************************************************************

2023-10-04T17:55:44,278   !!
2023-10-04T17:55:44,278     check.warn(importable)
2023-10-04T17:55:44,278   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-04T17:55:44,278   !!

2023-10-04T17:55:44,278           ********************************************************************************
2023-10-04T17:55:44,278           ############################
2023-10-04T17:55:44,278           # Package would be ignored #
2023-10-04T17:55:44,278           ############################
2023-10-04T17:55:44,279           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-04T17:55:44,279           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,279           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,279           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-04T17:55:44,279           to the `packages` configuration field.

2023-10-04T17:55:44,279           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,279           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,280           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,280           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,280           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,280           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-04T17:55:44,280           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-04T17:55:44,280           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,280           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,281           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,281           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,281           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,281           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,281                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,282                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,282                 directory, all directories are treated like packages.
2023-10-04T17:55:44,282           ********************************************************************************

2023-10-04T17:55:44,282   !!
2023-10-04T17:55:44,282     check.warn(importable)
2023-10-04T17:55:44,282   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-04T17:55:44,282   !!

2023-10-04T17:55:44,283           ********************************************************************************
2023-10-04T17:55:44,283           ############################
2023-10-04T17:55:44,283           # Package would be ignored #
2023-10-04T17:55:44,283           ############################
2023-10-04T17:55:44,283           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-04T17:55:44,283           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,283           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,283           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-04T17:55:44,284           to the `packages` configuration field.

2023-10-04T17:55:44,284           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,284           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,284           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,284           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,284           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,285           If you don't want 'moleculekit.share' to be distributed and are
2023-10-04T17:55:44,285           already explicitly excluding 'moleculekit.share' via
2023-10-04T17:55:44,285           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,285           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,285           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,285           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,286           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,286           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,286                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,286                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,286                 directory, all directories are treated like packages.
2023-10-04T17:55:44,286           ********************************************************************************

2023-10-04T17:55:44,287   !!
2023-10-04T17:55:44,287     check.warn(importable)
2023-10-04T17:55:44,287   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-04T17:55:44,287   !!

2023-10-04T17:55:44,287           ********************************************************************************
2023-10-04T17:55:44,287           ############################
2023-10-04T17:55:44,287           # Package would be ignored #
2023-10-04T17:55:44,288           ############################
2023-10-04T17:55:44,288           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-04T17:55:44,288           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,288           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,288           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-04T17:55:44,288           to the `packages` configuration field.

2023-10-04T17:55:44,289           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,289           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,289           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,289           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,289           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,290           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-04T17:55:44,290           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-04T17:55:44,290           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,290           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,290           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,290           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,291           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,291           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,291                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,291                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,291                 directory, all directories are treated like packages.
2023-10-04T17:55:44,291           ********************************************************************************

2023-10-04T17:55:44,292   !!
2023-10-04T17:55:44,292     check.warn(importable)
2023-10-04T17:55:44,292   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-04T17:55:44,292   !!

2023-10-04T17:55:44,292           ********************************************************************************
2023-10-04T17:55:44,293           ############################
2023-10-04T17:55:44,293           # Package would be ignored #
2023-10-04T17:55:44,293           ############################
2023-10-04T17:55:44,293           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-04T17:55:44,293           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,293           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,293           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-04T17:55:44,294           to the `packages` configuration field.

2023-10-04T17:55:44,294           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,294           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,294           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,294           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,294           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,295           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-04T17:55:44,295           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-04T17:55:44,295           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,295           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,295           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,295           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,296           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,296           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,296                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,296                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,296                 directory, all directories are treated like packages.
2023-10-04T17:55:44,296           ********************************************************************************

2023-10-04T17:55:44,297   !!
2023-10-04T17:55:44,297     check.warn(importable)
2023-10-04T17:55:44,297   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-04T17:55:44,297   !!

2023-10-04T17:55:44,297           ********************************************************************************
2023-10-04T17:55:44,297           ############################
2023-10-04T17:55:44,297           # Package would be ignored #
2023-10-04T17:55:44,297           ############################
2023-10-04T17:55:44,298           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-04T17:55:44,298           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,298           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,298           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-04T17:55:44,298           to the `packages` configuration field.

2023-10-04T17:55:44,298           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,298           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,299           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,299           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,299           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,299           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-04T17:55:44,300           already explicitly excluding 'moleculekit.tmalign' via
2023-10-04T17:55:44,300           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,300           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,300           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,300           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,301           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,301           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,301                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,301                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,301                 directory, all directories are treated like packages.
2023-10-04T17:55:44,301           ********************************************************************************

2023-10-04T17:55:44,302   !!
2023-10-04T17:55:44,302     check.warn(importable)
2023-10-04T17:55:44,302   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-04T17:55:44,302   !!

2023-10-04T17:55:44,302           ********************************************************************************
2023-10-04T17:55:44,303           ############################
2023-10-04T17:55:44,303           # Package would be ignored #
2023-10-04T17:55:44,303           ############################
2023-10-04T17:55:44,303           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-04T17:55:44,303           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,303           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,303           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-04T17:55:44,304           to the `packages` configuration field.

2023-10-04T17:55:44,304           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,304           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,304           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,304           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,305           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,305           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-04T17:55:44,305           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-04T17:55:44,305           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,305           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,306           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,306           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,306           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,307           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,307                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,307                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,307                 directory, all directories are treated like packages.
2023-10-04T17:55:44,307           ********************************************************************************

2023-10-04T17:55:44,307   !!
2023-10-04T17:55:44,308     check.warn(importable)
2023-10-04T17:55:44,308   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-04T17:55:44,308   !!

2023-10-04T17:55:44,308           ********************************************************************************
2023-10-04T17:55:44,308           ############################
2023-10-04T17:55:44,308           # Package would be ignored #
2023-10-04T17:55:44,308           ############################
2023-10-04T17:55:44,309           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-04T17:55:44,309           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,309           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,309           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-04T17:55:44,309           to the `packages` configuration field.

2023-10-04T17:55:44,310           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,310           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,310           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,310           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,310           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,311           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-04T17:55:44,311           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-04T17:55:44,311           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,311           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,311           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,311           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,312           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,312           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,312                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,312                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,312                 directory, all directories are treated like packages.
2023-10-04T17:55:44,313           ********************************************************************************

2023-10-04T17:55:44,313   !!
2023-10-04T17:55:44,313     check.warn(importable)
2023-10-04T17:55:44,313   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-04T17:55:44,313   !!

2023-10-04T17:55:44,314           ********************************************************************************
2023-10-04T17:55:44,315           ############################
2023-10-04T17:55:44,315           # Package would be ignored #
2023-10-04T17:55:44,315           ############################
2023-10-04T17:55:44,315           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-04T17:55:44,315           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,315           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,316           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-04T17:55:44,316           to the `packages` configuration field.

2023-10-04T17:55:44,316           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,316           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,316           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,317           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,317           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,317           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-04T17:55:44,317           already explicitly excluding 'moleculekit.wrapping' via
2023-10-04T17:55:44,318           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,318           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,318           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,318           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,318           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,319           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,319                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,319                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,319                 directory, all directories are treated like packages.
2023-10-04T17:55:44,319           ********************************************************************************

2023-10-04T17:55:44,319   !!
2023-10-04T17:55:44,320     check.warn(importable)
2023-10-04T17:55:44,320   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-04T17:55:44,320   !!

2023-10-04T17:55:44,320           ********************************************************************************
2023-10-04T17:55:44,320           ############################
2023-10-04T17:55:44,320           # Package would be ignored #
2023-10-04T17:55:44,320           ############################
2023-10-04T17:55:44,321           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-04T17:55:44,321           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,321           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,321           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-04T17:55:44,321           to the `packages` configuration field.

2023-10-04T17:55:44,321           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,321           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,322           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,322           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,322           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,322           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-04T17:55:44,322           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-04T17:55:44,323           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,323           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,323           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,323           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,323           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,324           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,324                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,324                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,324                 directory, all directories are treated like packages.
2023-10-04T17:55:44,324           ********************************************************************************

2023-10-04T17:55:44,325   !!
2023-10-04T17:55:44,325     check.warn(importable)
2023-10-04T17:55:44,325   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-04T17:55:44,325   !!

2023-10-04T17:55:44,325           ********************************************************************************
2023-10-04T17:55:44,325           ############################
2023-10-04T17:55:44,325           # Package would be ignored #
2023-10-04T17:55:44,326           ############################
2023-10-04T17:55:44,326           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-04T17:55:44,326           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,326           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,326           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-04T17:55:44,326           to the `packages` configuration field.

2023-10-04T17:55:44,327           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,327           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,327           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,327           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,327           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,328           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-04T17:55:44,328           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-04T17:55:44,328           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,328           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,328           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,328           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,329           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,329           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,329                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,329                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,329                 directory, all directories are treated like packages.
2023-10-04T17:55:44,329           ********************************************************************************

2023-10-04T17:55:44,330   !!
2023-10-04T17:55:44,330     check.warn(importable)
2023-10-04T17:55:44,330   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-04T17:55:44,330   !!

2023-10-04T17:55:44,330           ********************************************************************************
2023-10-04T17:55:44,330           ############################
2023-10-04T17:55:44,330           # Package would be ignored #
2023-10-04T17:55:44,331           ############################
2023-10-04T17:55:44,331           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-04T17:55:44,331           but it is absent from setuptools' `packages` configuration.

2023-10-04T17:55:44,331           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T17:55:44,331           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-04T17:55:44,331           to the `packages` configuration field.

2023-10-04T17:55:44,331           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T17:55:44,332           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T17:55:44,332           instead of `find_packages(...)`/`find:`).

2023-10-04T17:55:44,332           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T17:55:44,332           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T17:55:44,332           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-04T17:55:44,332           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-04T17:55:44,333           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T17:55:44,333           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T17:55:44,333           combination with a more fine grained `package-data` configuration.

2023-10-04T17:55:44,333           You can read more about "package data files" on setuptools documentation page:

2023-10-04T17:55:44,334           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T17:55:44,334           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T17:55:44,334                 even if it does not contain any `.py` files.
2023-10-04T17:55:44,335                 On the other hand, currently there is no concept of package data
2023-10-04T17:55:44,335                 directory, all directories are treated like packages.
2023-10-04T17:55:44,335           ********************************************************************************

2023-10-04T17:55:44,335   !!
2023-10-04T17:55:44,335     check.warn(importable)
2023-10-04T17:55:44,336   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:44,336   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:44,336   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T17:55:44,336   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T17:55:44,336   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T17:55:44,336   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T17:55:44,337   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T17:55:44,347   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T17:55:44,349   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T17:55:44,350   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T17:55:44,382   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T17:55:44,384   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T17:55:44,385   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T17:55:44,412   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T17:55:44,414   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T17:55:44,415   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T17:55:44,418   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T17:55:44,420   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T17:55:44,631   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T17:55:44,631   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T17:55:44,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-04T17:55:44,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,635   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,637   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,639   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,641   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,643   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,646   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,647   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,650   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,651   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,653   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,655   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,657   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,659   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,661   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,663   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,666   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,668   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,670   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,672   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,674   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,676   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,679   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,681   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,683   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,685   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,687   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,689   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,691   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,693   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,695   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,697   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,699   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,701   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,703   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,705   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,707   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,709   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,711   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,713   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,715   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,717   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,719   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,721   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,723   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,725   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,728   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,732   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,736   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,740   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,743   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,745   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,747   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,749   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,751   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,753   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,755   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,756   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,758   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,760   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,762   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,764   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,766   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,768   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,769   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,771   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,773   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,775   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,777   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,779   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,781   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,782   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,785   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,786   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,789   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,791   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,793   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,796   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,800   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,803   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,808   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:44,813   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,035   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,037   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,040   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,042   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,045   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,047   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,050   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,053   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,055   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,058   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,060   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,063   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,067   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,071   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,074   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,082   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,084   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,087   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,090   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,092   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,095   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,097   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,100   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,103   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,106   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,108   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,111   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,114   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,116   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,119   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,121   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,124   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,127   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,129   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,132   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,135   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,137   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,140   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,142   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,145   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,148   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,151   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,154   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,156   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,159   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,161   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,164   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,167   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,170   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,172   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,176   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,178   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,181   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,184   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,186   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,189   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,192   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,194   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,196   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,198   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,200   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,202   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,204   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,206   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,209   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,211   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,213   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,215   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,217   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,219   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,221   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,222   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,224   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,226   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,229   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,230   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,232   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,234   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,236   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,238   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,240   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,242   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,244   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,245   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,247   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,249   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,251   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,253   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,255   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,257   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,259   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,260   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,262   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,264   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T17:55:45,266   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T17:55:45,267   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T17:55:45,285   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T17:55:45,287   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T17:55:45,289   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T17:55:45,290   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T17:55:45,292   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T17:55:45,293   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T17:55:45,298   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T17:55:45,299   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T17:55:45,318   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T17:55:45,319   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T17:55:45,320   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T17:55:45,341   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T17:55:45,343   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T17:55:45,345   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T17:55:45,346   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T17:55:45,348   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T17:55:45,350   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T17:55:45,352   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T17:55:45,353   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T17:55:45,356   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T17:55:45,358   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T17:55:45,361   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T17:55:45,362   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T17:55:45,390   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T17:55:45,392   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T17:55:45,393   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T17:55:45,411   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T17:55:45,414   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T17:55:45,415   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T17:55:45,435   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T17:55:45,437   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T17:55:45,438   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T17:55:45,460   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T17:55:45,472   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T17:55:45,472   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.14'
2023-10-04T17:55:45,472   running build_ext
2023-10-04T17:55:45,483   building 'moleculekit.interactions.hbonds' extension
2023-10-04T17:55:45,484   creating build/temp.linux-armv7l-cpython-39
2023-10-04T17:55:45,485   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-04T17:55:45,485   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T17:55:45,486   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T17:55:45,487   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-04T17:55:45,742   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:55:45,742                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:55:45,742                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:55:45,742                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-04T17:55:45,742   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:55:45,743      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:55:45,743         |  ^~~~~~~
2023-10-04T17:56:11,707   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:56:12,031   building 'moleculekit.interactions.pipi' extension
2023-10-04T17:56:12,032   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T17:56:12,032   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-04T17:56:12,264   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:56:12,264                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:56:12,264                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:56:12,264                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-04T17:56:12,265   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:56:12,265      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:56:12,265         |  ^~~~~~~
2023-10-04T17:56:40,224   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:56:40,549   building 'moleculekit.interactions.cationpi' extension
2023-10-04T17:56:40,550   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T17:56:40,551   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-04T17:56:40,782   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:56:40,783                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:56:40,783                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:56:40,783                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-04T17:56:40,783   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:56:40,783      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:56:40,783         |  ^~~~~~~
2023-10-04T17:57:08,360   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:57:08,682   building 'moleculekit.interactions.sigmahole' extension
2023-10-04T17:57:08,683   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T17:57:08,684   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-04T17:57:08,921   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:57:08,921                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:57:08,921                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:57:08,921                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-04T17:57:08,921   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:57:08,921      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:57:08,922         |  ^~~~~~~
2023-10-04T17:57:36,158   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:57:36,477   building 'moleculekit.wrapping' extension
2023-10-04T17:57:36,478   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T17:57:36,479   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-04T17:57:36,719   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:57:36,719                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:57:36,719                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:57:36,719                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-04T17:57:36,720   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:57:36,720      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:57:36,720         |  ^~~~~~~
2023-10-04T17:58:00,474   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:58:00,691   building 'moleculekit.bondguesser_utils' extension
2023-10-04T17:58:00,692   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T17:58:00,693   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-04T17:58:00,923   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:58:00,923                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:58:00,923                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:58:00,923                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-04T17:58:00,923   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:58:00,923      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:58:00,924         |  ^~~~~~~
2023-10-04T17:58:02,471   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-04T17:58:02,472   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T17:58:02,472   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-04T17:58:02,472         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T17:58:02,472   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T17:58:02,472   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-04T17:58:02,473         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T17:58:02,473   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T17:58:02,473   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-04T17:58:02,473         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T17:58:02,473   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,473   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,474         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,474   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,474   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T17:58:02,474         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,474   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,474   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,474         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,475   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,475   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,475         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,475   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,475   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T17:58:02,475         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,475   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,475   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,476         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,476   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,476   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,476         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,476   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,476   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T17:58:02,476         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,477   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,477   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,477         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,477   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,477   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,477         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,477   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,478   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,478         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,478   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,478   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,478         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,478   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,478   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,479         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,479   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,479   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T17:58:02,479         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,479   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,479   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,479         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,480   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,480   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T17:58:02,480         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,480   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,480   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,480         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,480   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,481   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T17:58:02,481         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,481   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,481   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,481         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,481   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T17:58:02,481   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T17:58:02,481         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,500   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-04T17:58:02,501   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T17:58:02,501   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-04T17:58:02,501         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-04T17:58:02,501   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T17:58:02,501   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-04T17:58:02,501         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T17:58:25,518   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:58:25,816   building 'moleculekit.atomselect_utils' extension
2023-10-04T17:58:25,817   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T17:58:25,818   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-04T17:58:26,052   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:58:26,053                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:58:26,053                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:58:26,053                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-04T17:58:26,053   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:58:26,053      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:58:26,053         |  ^~~~~~~
2023-10-04T17:58:27,786   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-04T17:58:27,787   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T17:58:27,787   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-04T17:58:27,787         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T17:58:27,792   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T17:58:27,792   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T17:58:27,792   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T17:58:27,792         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T17:58:27,797   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T17:58:27,797   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T17:58:27,797   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T17:58:27,798         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T17:58:58,261   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:58:58,824   building 'moleculekit.distance_utils' extension
2023-10-04T17:58:58,824   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T17:58:58,825   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-04T17:58:59,058   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:58:59,058                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:58:59,058                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:58:59,059                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-04T17:58:59,059   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:58:59,059      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:58:59,059         |  ^~~~~~~
2023-10-04T17:59:31,184   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:59:31,507   building 'moleculekit.occupancy_utils' extension
2023-10-04T17:59:31,508   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T17:59:31,508   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-04T17:59:31,775   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:59:31,775                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:59:31,775                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:59:31,775                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-04T17:59:31,775   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:59:31,776      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:59:31,776         |  ^~~~~~~
2023-10-04T17:59:54,699   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T17:59:54,907   building 'moleculekit.xtc' extension
2023-10-04T17:59:54,908   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T17:59:54,908   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T17:59:54,909   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-04T17:59:55,154   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,154      66 |  "OK",
2023-10-04T17:59:55,155         |  ^~~~
2023-10-04T17:59:55,155   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,155      67 |  "Header",
2023-10-04T17:59:55,155         |  ^~~~~~~~
2023-10-04T17:59:55,156   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,156      68 |  "String",
2023-10-04T17:59:55,156         |  ^~~~~~~~
2023-10-04T17:59:55,156   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,156      69 |  "Double",
2023-10-04T17:59:55,156         |  ^~~~~~~~
2023-10-04T17:59:55,157   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,157      70 |  "Integer",
2023-10-04T17:59:55,157         |  ^~~~~~~~~
2023-10-04T17:59:55,157   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,157      71 |  "Float",
2023-10-04T17:59:55,157         |  ^~~~~~~
2023-10-04T17:59:55,158   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,158      72 |  "Unsigned integer",
2023-10-04T17:59:55,158         |  ^~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,158   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,158      73 |  "Compressed 3D coordinate",
2023-10-04T17:59:55,158         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,159   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,159      74 |  "Closing file",
2023-10-04T17:59:55,159         |  ^~~~~~~~~~~~~~
2023-10-04T17:59:55,159   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,159      75 |  "Magic number",
2023-10-04T17:59:55,159         |  ^~~~~~~~~~~~~~
2023-10-04T17:59:55,160   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,160      76 |  "Not enough memory",
2023-10-04T17:59:55,160         |  ^~~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,160   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,160      77 |  "End of file",
2023-10-04T17:59:55,160         |  ^~~~~~~~~~~~~
2023-10-04T17:59:55,161   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T17:59:55,161      78 |  "File not found"
2023-10-04T17:59:55,161         |  ^~~~~~~~~~~~~~~~
2023-10-04T17:59:55,169   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-04T17:59:55,169   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,169     459 |     while (size >= num && num_of_bits < 32)
2023-10-04T17:59:55,169         |            ~~~~~^~~~~~
2023-10-04T17:59:55,171   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-04T17:59:55,171   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,171     505 |     while (bytes[num_of_bytes] >= num)
2023-10-04T17:59:55,171         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-04T17:59:55,174   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-04T17:59:55,174   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,174     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-04T17:59:55,174         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,175   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,175     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-04T17:59:55,175         |               ~~^~~~~~~~~~~~~~
2023-10-04T17:59:55,175   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,176     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-04T17:59:55,176         |               ~~^~~~~~~~~~~~~~~~
2023-10-04T17:59:55,177   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-04T17:59:55,177   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,177     664 |   if (lastbits < num_of_bits)
2023-10-04T17:59:55,178         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-04T17:59:55,181   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-04T17:59:55,182   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,182     785 |  if(size3>xfp->buf1size)
2023-10-04T17:59:55,182         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T17:59:55,184   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,184     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T17:59:55,184         |                   ^
2023-10-04T17:59:55,187   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,188     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,188         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,188   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,188     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,188         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,189   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,189     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,189         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,190   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,190     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,190         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,190   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,191     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,191         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,191   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,191     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T17:59:55,191         |        ~~~~~~~~~^~~~~~~~
2023-10-04T17:59:55,192   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,193     756 |  int smallidx,  minidx, maxidx;
2023-10-04T17:59:55,193         |                 ^~~~~~
2023-10-04T17:59:55,193   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,193     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T17:59:55,193         |                         ^~~~~~
2023-10-04T17:59:55,193   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T17:59:55,193     763 |  int errval=1;
2023-10-04T17:59:55,194         |      ^~~~~~
2023-10-04T17:59:55,196   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-04T17:59:55,196   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,197    1011 |  if(size3>xfp->buf1size)
2023-10-04T17:59:55,197         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T17:59:55,199   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,199    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T17:59:55,199         |                     ~~~~~~~~^~~~~~~
2023-10-04T17:59:55,200   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,201    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T17:59:55,201         |                    ~~~~~~~~^~~~~~~
2023-10-04T17:59:55,201   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,202    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T17:59:55,202         |                    ~~~~~~~~^~~~~~~
2023-10-04T17:59:55,204   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,204    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-04T17:59:55,204         |                  ^
2023-10-04T17:59:55,205   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,205    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T17:59:55,205         |                   ^
2023-10-04T17:59:55,209   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,209    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T17:59:55,209         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,210   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,210    1001 |  int errval;
2023-10-04T17:59:55,210         |      ^~~~~~
2023-10-04T17:59:55,213   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-04T17:59:55,214   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,214    1316 |  if(size3>xfp->buf1size)
2023-10-04T17:59:55,214         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T17:59:55,216   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,216    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T17:59:55,216         |                   ^
2023-10-04T17:59:55,220   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,220    1289 |  int smallidx,  maxidx, minidx;
2023-10-04T17:59:55,220         |                         ^~~~~~
2023-10-04T17:59:55,220   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,220    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T17:59:55,221         |                         ^~~~~~
2023-10-04T17:59:55,221   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T17:59:55,221    1297 |  int errval=1;
2023-10-04T17:59:55,221         |      ^~~~~~
2023-10-04T17:59:55,223   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-04T17:59:55,224   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,224    1513 |  if(size3>xfp->buf1size) {
2023-10-04T17:59:55,224         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T17:59:55,228   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,229    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-04T17:59:55,229         |                  ^
2023-10-04T17:59:55,229   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T17:59:55,230    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T17:59:55,230         |                   ^
2023-10-04T17:59:55,234   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T17:59:55,234    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T17:59:55,234         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T17:59:55,235   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T17:59:55,235    1504 |  int errval=1;
2023-10-04T17:59:55,235         |      ^~~~~~
2023-10-04T17:59:57,459   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-04T17:59:57,714   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-04T17:59:58,287   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-04T17:59:58,287   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T17:59:58,288     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-04T17:59:58,288         |      ^~~
2023-10-04T17:59:58,295   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-04T17:59:58,295   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T17:59:58,295     418 |  int nf3 = nframes * 3;
2023-10-04T17:59:58,295         |      ^~~
2023-10-04T17:59:58,300   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-04T17:59:58,301   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-04T17:59:58,301     491 |  int reading_index = 0;
2023-10-04T17:59:58,301         |      ^~~~~~~~~~~~~
2023-10-04T17:59:58,301   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-04T17:59:58,301     492 |  int writing_index = 0;
2023-10-04T17:59:58,301         |      ^~~~~~~~~~~~~
2023-10-04T17:59:59,059   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-04T17:59:59,287   In file included from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T17:59:59,288                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T17:59:59,288                    from /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T17:59:59,288                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-04T17:59:59,288   /tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T17:59:59,288      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T17:59:59,288         |  ^~~~~~~
2023-10-04T18:00:19,379   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-04T18:00:19,693   building 'moleculekit.tmalign' extension
2023-10-04T18:00:19,694   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T18:00:19,695   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T18:00:19,696   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-04T18:00:48,982   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-7fxvzx29/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-04T18:01:07,396   In file included from /usr/include/c++/10/vector:72,
2023-10-04T18:01:07,397                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T18:01:07,397   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-04T18:01:07,397   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-04T18:01:07,397     426 |       vector<_Tp, _Alloc>::
2023-10-04T18:01:07,397         |       ^~~~~~~~~~~~~~~~~~~
2023-10-04T18:01:07,974   In file included from /usr/include/c++/10/vector:67,
2023-10-04T18:01:07,975                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T18:01:07,975   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-04T18:01:07,975   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T18:01:07,975    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T18:01:07,975         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T18:01:07,976   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T18:01:07,976    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T18:01:07,976         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T18:01:07,976   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T18:01:07,977    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T18:01:07,977         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T18:01:10,434   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-04T18:01:10,891   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T18:01:10,891   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.14'
2023-10-04T18:01:10,891   installing to build/bdist.linux-armv7l/wheel
2023-10-04T18:01:10,891   running install
2023-10-04T18:01:10,917   running install_lib
2023-10-04T18:01:10,924   creating build/bdist.linux-armv7l
2023-10-04T18:01:10,925   creating build/bdist.linux-armv7l/wheel
2023-10-04T18:01:10,928   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:10,929   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T18:01:10,931   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T18:01:10,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T18:01:10,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T18:01:10,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T18:01:10,941   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T18:01:10,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T18:01:10,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T18:01:10,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:10,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,004   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T18:01:11,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T18:01:11,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T18:01:11,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,066   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T18:01:11,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T18:01:11,069   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T18:01:11,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T18:01:11,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T18:01:11,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T18:01:11,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T18:01:11,080   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T18:01:11,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T18:01:11,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T18:01:11,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T18:01:11,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T18:01:11,089   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T18:01:11,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T18:01:11,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T18:01:11,094   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T18:01:11,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T18:01:11,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T18:01:11,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,123   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T18:01:11,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T18:01:11,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T18:01:11,342   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-04T18:01:11,346   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,538   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T18:01:11,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T18:01:11,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T18:01:11,653   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T18:01:11,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T18:01:11,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,753   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T18:01:11,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T18:01:11,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T18:01:11,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:11,779   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,780   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T18:01:11,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T18:01:11,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T18:01:11,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,807   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T18:01:11,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T18:01:11,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T18:01:11,830   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T18:01:11,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T18:01:11,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T18:01:11,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,900   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T18:01:11,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T18:01:11,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T18:01:11,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T18:01:11,973   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T18:01:11,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T18:01:11,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T18:01:12,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,018   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T18:01:12,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T18:01:12,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T18:01:12,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T18:01:12,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,071   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T18:01:12,073   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T18:01:12,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T18:01:12,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T18:01:12,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T18:01:12,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T18:01:12,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T18:01:12,085   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T18:01:12,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T18:01:12,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T18:01:12,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T18:01:12,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T18:01:12,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,118   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T18:01:12,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,179   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T18:01:12,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T18:01:12,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T18:01:12,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T18:01:12,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T18:01:12,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,192   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,203   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T18:01:12,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T18:01:12,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T18:01:12,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T18:01:12,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T18:01:12,254   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,267   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T18:01:12,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T18:01:12,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T18:01:12,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T18:01:12,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T18:01:12,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T18:01:12,279   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T18:01:12,279   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T18:01:12,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T18:01:12,310   running install_egg_info
2023-10-04T18:01:12,316   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.14-py3.9.egg-info
2023-10-04T18:01:12,329   running install_scripts
2023-10-04T18:01:12,378   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.14.dist-info/WHEEL
2023-10-04T18:01:12,382   creating '/tmp/pip-wheel-eiuiqyxk/.tmp-kw1_4wwj/moleculekit-1.7.14-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-04T18:01:12,385   adding 'moleculekit/__init__.py'
2023-10-04T18:01:12,386   adding 'moleculekit/_version.py'
2023-10-04T18:01:12,388   adding 'moleculekit/align.py'
2023-10-04T18:01:12,702   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:12,715   adding 'moleculekit/bondguesser.py'
2023-10-04T18:01:12,955   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:12,964   adding 'moleculekit/config.py'
2023-10-04T18:01:12,965   adding 'moleculekit/dihedral.py'
2023-10-04T18:01:12,966   adding 'moleculekit/distance.py'
2023-10-04T18:01:13,270   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:13,282   adding 'moleculekit/home.py'
2023-10-04T18:01:13,283   adding 'moleculekit/logging.ini'
2023-10-04T18:01:13,296   adding 'moleculekit/molecule.py'
2023-10-04T18:01:13,520   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:13,529   adding 'moleculekit/opm.py'
2023-10-04T18:01:13,532   adding 'moleculekit/periodictable.py'
2023-10-04T18:01:13,533   adding 'moleculekit/pymolgraphics.py'
2023-10-04T18:01:13,534   adding 'moleculekit/rcsb.py'
2023-10-04T18:01:13,536   adding 'moleculekit/rdkitintegration.py'
2023-10-04T18:01:13,548   adding 'moleculekit/readers.py'
2023-10-04T18:01:14,149   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:14,174   adding 'moleculekit/util.py'
2023-10-04T18:01:14,175   adding 'moleculekit/version.py'
2023-10-04T18:01:14,177   adding 'moleculekit/viewer.py'
2023-10-04T18:01:14,178   adding 'moleculekit/vmd_wrapper'
2023-10-04T18:01:14,180   adding 'moleculekit/vmdgraphics.py'
2023-10-04T18:01:14,182   adding 'moleculekit/vmdviewer.py'
2023-10-04T18:01:14,413   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:14,426   adding 'moleculekit/writers.py'
2023-10-04T18:01:14,692   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:14,702   adding 'moleculekit/atomselect/__init__.py'
2023-10-04T18:01:14,704   adding 'moleculekit/atomselect/analyze.py'
2023-10-04T18:01:14,706   adding 'moleculekit/atomselect/atomselect.py'
2023-10-04T18:01:14,708   adding 'moleculekit/atomselect/languageparser.py'
2023-10-04T18:01:14,812   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-04T18:01:14,823   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-04T18:01:14,915   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-04T18:01:14,924   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-04T18:01:15,022   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-04T18:01:15,032   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-04T18:01:15,034   adding 'moleculekit/interactions/__init__.py'
2023-10-04T18:01:15,316   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:15,583   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:15,594   adding 'moleculekit/interactions/interactions.py'
2023-10-04T18:01:15,873   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:16,158   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T18:01:16,258   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-04T18:01:16,268   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-04T18:01:16,358   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-04T18:01:16,367   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-04T18:01:16,459   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-04T18:01:16,468   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-04T18:01:16,559   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-04T18:01:16,568   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-04T18:01:16,655   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-04T18:01:16,663   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-04T18:01:16,665   adding 'moleculekit/pdbx/__init__.py'
2023-10-04T18:01:16,668   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-04T18:01:16,671   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-04T18:01:16,674   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-04T18:01:16,675   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-04T18:01:16,677   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-04T18:01:16,678   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-04T18:01:16,680   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-04T18:01:16,681   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-04T18:01:16,683   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-04T18:01:16,684   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-04T18:01:16,685   adding 'moleculekit/ply/__init__.py'
2023-10-04T18:01:16,690   adding 'moleculekit/ply/lex.py'
2023-10-04T18:01:16,701   adding 'moleculekit/ply/yacc.py'
2023-10-04T18:01:16,704   adding 'moleculekit/projections/__init__.py'
2023-10-04T18:01:16,706   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-04T18:01:16,709   adding 'moleculekit/projections/metricdihedral.py'
2023-10-04T18:01:16,713   adding 'moleculekit/projections/metricdistance.py'
2023-10-04T18:01:16,715   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-04T18:01:16,717   adding 'moleculekit/projections/metricgyration.py'
2023-10-04T18:01:16,720   adding 'moleculekit/projections/metricplumed2.py'
2023-10-04T18:01:16,722   adding 'moleculekit/projections/metricrmsd.py'
2023-10-04T18:01:16,724   adding 'moleculekit/projections/metricsasa.py'
2023-10-04T18:01:16,726   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-04T18:01:16,728   adding 'moleculekit/projections/metricshell.py'
2023-10-04T18:01:16,730   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-04T18:01:16,731   adding 'moleculekit/projections/metrictmscore.py'
2023-10-04T18:01:16,732   adding 'moleculekit/projections/projection.py'
2023-10-04T18:01:16,734   adding 'moleculekit/projections/util.py'
2023-10-04T18:01:16,736   adding 'moleculekit/share/ALA.cif'
2023-10-04T18:01:16,737   adding 'moleculekit/share/backbone.cif'
2023-10-04T18:01:18,037   adding 'moleculekit/share/opm_sequences.json'
2023-10-04T18:01:18,122   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-04T18:01:18,126   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-04T18:01:18,127   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-04T18:01:18,129   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-04T18:01:18,130   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-04T18:01:18,131   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-04T18:01:18,132   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-04T18:01:18,133   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-04T18:01:18,135   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-04T18:01:18,136   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-04T18:01:18,137   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-04T18:01:18,138   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-04T18:01:18,139   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-04T18:01:18,141   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-04T18:01:18,142   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-04T18:01:18,143   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-04T18:01:18,144   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-04T18:01:18,146   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-04T18:01:18,147   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-04T18:01:18,148   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-04T18:01:18,149   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-04T18:01:18,151   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-04T18:01:18,152   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-04T18:01:18,153   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-04T18:01:18,154   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-04T18:01:18,156   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-04T18:01:18,157   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-04T18:01:18,158   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-04T18:01:18,159   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-04T18:01:18,160   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-04T18:01:18,161   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-04T18:01:18,163   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-04T18:01:18,164   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-04T18:01:18,165   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-04T18:01:18,166   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-04T18:01:18,167   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-04T18:01:18,169   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-04T18:01:18,170   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-04T18:01:18,171   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-04T18:01:18,172   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-04T18:01:18,174   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-04T18:01:18,175   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-04T18:01:18,176   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-04T18:01:18,177   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-04T18:01:18,178   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-04T18:01:18,180   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-04T18:01:18,181   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-04T18:01:18,182   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-04T18:01:18,183   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-04T18:01:18,185   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-04T18:01:18,186   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-04T18:01:18,187   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-04T18:01:18,188   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-04T18:01:18,190   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-04T18:01:18,191   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-04T18:01:18,192   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-04T18:01:18,193   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-04T18:01:18,194   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-04T18:01:18,196   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-04T18:01:18,197   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-04T18:01:18,198   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-04T18:01:18,199   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-04T18:01:18,201   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-04T18:01:18,202   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-04T18:01:18,203   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-04T18:01:18,204   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-04T18:01:18,206   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-04T18:01:18,207   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-04T18:01:18,208   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-04T18:01:18,209   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-04T18:01:18,210   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-04T18:01:18,211   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-04T18:01:18,213   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-04T18:01:18,214   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-04T18:01:18,215   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-04T18:01:18,216   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-04T18:01:18,218   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-04T18:01:18,219   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-04T18:01:18,220   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-04T18:01:18,221   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-04T18:01:18,222   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-04T18:01:18,224   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-04T18:01:18,225   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-04T18:01:18,226   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-04T18:01:18,228   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-04T18:01:18,229   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-04T18:01:18,230   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-04T18:01:18,231   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-04T18:01:18,232   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-04T18:01:18,234   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-04T18:01:18,235   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-04T18:01:18,236   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-04T18:01:18,237   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-04T18:01:18,239   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-04T18:01:18,240   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-04T18:01:18,241   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-04T18:01:18,242   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-04T18:01:18,244   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-04T18:01:18,245   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-04T18:01:18,246   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-04T18:01:18,247   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-04T18:01:18,249   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-04T18:01:18,250   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-04T18:01:18,251   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-04T18:01:18,252   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-04T18:01:18,253   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-04T18:01:18,255   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-04T18:01:18,256   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-04T18:01:18,257   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-04T18:01:18,258   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-04T18:01:18,259   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-04T18:01:18,261   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-04T18:01:18,262   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-04T18:01:18,263   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-04T18:01:18,264   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-04T18:01:18,266   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-04T18:01:18,267   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-04T18:01:18,268   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-04T18:01:18,269   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-04T18:01:18,271   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-04T18:01:18,272   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-04T18:01:18,273   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-04T18:01:18,274   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-04T18:01:18,275   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-04T18:01:18,277   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-04T18:01:18,280   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-04T18:01:18,281   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-04T18:01:18,282   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-04T18:01:18,283   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-04T18:01:18,285   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-04T18:01:18,286   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-04T18:01:18,287   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-04T18:01:18,288   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-04T18:01:18,289   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-04T18:01:18,291   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-04T18:01:18,292   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-04T18:01:18,293   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-04T18:01:18,294   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-04T18:01:18,295   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-04T18:01:18,297   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-04T18:01:18,298   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-04T18:01:18,299   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-04T18:01:18,300   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-04T18:01:18,301   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-04T18:01:18,303   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-04T18:01:18,304   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-04T18:01:18,305   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-04T18:01:18,306   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-04T18:01:18,307   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-04T18:01:18,309   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-04T18:01:18,310   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-04T18:01:18,311   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-04T18:01:18,313   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-04T18:01:18,314   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-04T18:01:18,315   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-04T18:01:18,317   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-04T18:01:18,318   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-04T18:01:18,319   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-04T18:01:18,320   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-04T18:01:18,322   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-04T18:01:18,323   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-04T18:01:18,324   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-04T18:01:18,325   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-04T18:01:18,326   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-04T18:01:18,328   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-04T18:01:18,329   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-04T18:01:18,330   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-04T18:01:18,331   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-04T18:01:18,332   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-04T18:01:18,334   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-04T18:01:18,335   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-04T18:01:18,336   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-04T18:01:18,338   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-04T18:01:18,339   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-04T18:01:18,340   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-04T18:01:18,341   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-04T18:01:18,343   adding 'moleculekit/smallmol/__init__.py'
2023-10-04T18:01:18,348   adding 'moleculekit/smallmol/smallmol.py'
2023-10-04T18:01:18,351   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-04T18:01:18,352   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-04T18:01:18,354   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-04T18:01:18,356   adding 'moleculekit/smallmol/util.py'
2023-10-04T18:01:18,358   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-04T18:01:18,360   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-04T18:01:18,361   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-04T18:01:18,363   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-04T18:01:18,453   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-04T18:01:18,461   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-04T18:01:18,463   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-04T18:01:18,464   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-04T18:01:18,482   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-04T18:01:18,485   adding 'moleculekit/tools/__init__.py'
2023-10-04T18:01:18,487   adding 'moleculekit/tools/atomtyper.py'
2023-10-04T18:01:18,489   adding 'moleculekit/tools/autosegment.py'
2023-10-04T18:01:18,491   adding 'moleculekit/tools/crystalpacking.py'
2023-10-04T18:01:18,493   adding 'moleculekit/tools/detect.py'
2023-10-04T18:01:18,495   adding 'moleculekit/tools/docking.py'
2023-10-04T18:01:18,497   adding 'moleculekit/tools/graphalignment.py'
2023-10-04T18:01:18,499   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-04T18:01:18,500   adding 'moleculekit/tools/moleculechecks.py'
2023-10-04T18:01:18,506   adding 'moleculekit/tools/preparation.py'
2023-10-04T18:01:18,509   adding 'moleculekit/tools/preparation_customres.py'
2023-10-04T18:01:18,511   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-04T18:01:18,514   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-04T18:01:18,516   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-04T18:01:18,517   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-04T18:01:18,605   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-04T18:01:18,614   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-04T18:01:18,703   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-04T18:01:18,711   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-04T18:01:18,712   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-04T18:01:18,716   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-04T18:01:18,717   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-04T18:01:18,718   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-04T18:01:18,725   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-04T18:01:18,727   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-04T18:01:18,729   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-04T18:01:18,732   adding 'moleculekit-1.7.14.dist-info/LICENSE'
2023-10-04T18:01:18,733   adding 'moleculekit-1.7.14.dist-info/METADATA'
2023-10-04T18:01:18,734   adding 'moleculekit-1.7.14.dist-info/WHEEL'
2023-10-04T18:01:18,735   adding 'moleculekit-1.7.14.dist-info/top_level.txt'
2023-10-04T18:01:18,740   adding 'moleculekit-1.7.14.dist-info/RECORD'
2023-10-04T18:01:18,872   removing build/bdist.linux-armv7l/wheel
2023-10-04T18:01:19,139   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-04T18:01:19,432   Created wheel for moleculekit: filename=moleculekit-1.7.14-cp39-cp39-linux_armv7l.whl size=12538294 sha256=97fc7c8c8c54ef694cf15c6e484b820059c32c27678ef5afb381dfd813acccf2
2023-10-04T18:01:19,433   Stored in directory: /tmp/pip-ephem-wheel-cache-gy5n5f6y/wheels/72/6a/e7/57cfe4d41abb11d328dbdd312a30183c89ef27d13232006a2e
2023-10-04T18:01:19,459 Successfully built moleculekit
2023-10-04T18:01:19,754 Removed build tracker: '/tmp/pip-build-tracker-bqs87fk3'