2023-10-04T18:58:35,729 Created temporary directory: /tmp/pip-build-tracker-wzl_npdh
2023-10-04T18:58:35,731 Initialized build tracking at /tmp/pip-build-tracker-wzl_npdh
2023-10-04T18:58:35,731 Created build tracker: /tmp/pip-build-tracker-wzl_npdh
2023-10-04T18:58:35,731 Entered build tracker: /tmp/pip-build-tracker-wzl_npdh
2023-10-04T18:58:35,732 Created temporary directory: /tmp/pip-wheel-xyte2e1j
2023-10-04T18:58:35,736 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ivpjebk
2023-10-04T18:58:35,759 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T18:58:35,763 2 location(s) to search for versions of moleculekit:
2023-10-04T18:58:35,763 * https://pypi.org/simple/moleculekit/
2023-10-04T18:58:35,763 * https://www.piwheels.org/simple/moleculekit/
2023-10-04T18:58:35,763 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-04T18:58:35,764 Getting page https://pypi.org/simple/moleculekit/
2023-10-04T18:58:35,765 Found index url https://pypi.org/simple/
2023-10-04T18:58:35,821 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-04T18:58:35,859   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,859   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-04T18:58:35,859   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,860   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-04T18:58:35,860   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,860   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-04T18:58:35,860   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,861   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-04T18:58:35,861   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,861   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-04T18:58:35,861   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,862   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-04T18:58:35,862   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,862   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-04T18:58:35,862   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,863   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-04T18:58:35,863   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,863   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-04T18:58:35,863   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,864   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-04T18:58:35,864   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,864   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-04T18:58:35,864   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,864   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-04T18:58:35,865   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,865   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-04T18:58:35,865   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,865   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-04T18:58:35,866   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,866   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-04T18:58:35,866   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,866   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-04T18:58:35,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,867   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-04T18:58:35,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,867   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-04T18:58:35,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,868   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-04T18:58:35,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,868   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-04T18:58:35,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,869   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-04T18:58:35,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,869   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-04T18:58:35,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,870   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-04T18:58:35,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,870   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-04T18:58:35,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,871   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-04T18:58:35,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,871   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-04T18:58:35,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,872   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-04T18:58:35,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,872   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-04T18:58:35,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,872   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-04T18:58:35,873   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,873   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-04T18:58:35,873   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,873   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-04T18:58:35,874   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,874   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-04T18:58:35,874   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T18:58:35,874   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-10-04T18:58:35,898   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-10-04T18:58:35,899   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-10-04T18:58:35,899   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-10-04T18:58:35,914   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-10-04T18:58:35,914   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
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2023-10-04T18:58:35,916   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-10-04T18:58:35,917   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-04T18:58:35,917   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-04T18:58:35,918   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-04T18:58:35,918   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-04T18:58:35,919   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-04T18:58:35,919   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-04T18:58:35,920   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-04T18:58:35,921   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-04T18:58:35,921   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-04T18:58:35,922   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-04T18:58:35,922   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-04T18:58:35,923   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-04T18:58:35,923   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-04T18:58:35,924   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-04T18:58:35,924   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-04T18:58:35,925 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-04T18:58:35,925 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-04T18:58:35,926 Found index url https://www.piwheels.org/simple/
2023-10-04T18:58:35,992 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-04T18:58:36,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T18:58:36,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T18:58:36,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T18:58:36,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T18:58:36,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T18:58:36,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T18:58:36,103 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-04T18:58:36,103 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-04T18:58:36,144 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-04T18:58:36,160 Collecting moleculekit==1.7.15
2023-10-04T18:58:36,162   Created temporary directory: /tmp/pip-unpack-nk3n_n5g
2023-10-04T18:58:37,074   Downloading moleculekit-1.7.15.tar.gz (6.2 MB)
2023-10-04T18:58:39,541   Added moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz to build tracker '/tmp/pip-build-tracker-wzl_npdh'
2023-10-04T18:58:39,550   Created temporary directory: /tmp/pip-build-env-z1khoyjn
2023-10-04T18:58:39,559   Installing build dependencies: started
2023-10-04T18:58:39,561   Running command pip subprocess to install build dependencies
2023-10-04T18:58:40,745   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-04T18:58:41,276   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T18:58:42,860   Collecting setuptools
2023-10-04T18:58:42,935     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-04T18:58:44,300   Collecting numpy>=1.18.5
2023-10-04T18:58:45,747     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-04T18:58:47,931   Collecting Cython>=0.29.21
2023-10-04T18:58:48,702     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-04T18:58:49,076   Collecting toml
2023-10-04T18:58:49,102     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-04T18:58:49,305   Collecting versioneer[toml]==0.28
2023-10-04T18:58:49,323     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-04T18:58:49,454   Collecting tomli (from versioneer[toml]==0.28)
2023-10-04T18:58:49,470     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-04T18:58:51,235   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-04T18:58:51,270     Creating /tmp/pip-build-env-z1khoyjn/overlay/bin
2023-10-04T18:58:51,272     changing mode of /tmp/pip-build-env-z1khoyjn/overlay/bin/versioneer to 755
2023-10-04T18:59:00,897     changing mode of /tmp/pip-build-env-z1khoyjn/overlay/bin/f2py to 755
2023-10-04T18:59:04,324     changing mode of /tmp/pip-build-env-z1khoyjn/overlay/bin/cygdb to 755
2023-10-04T18:59:04,326     changing mode of /tmp/pip-build-env-z1khoyjn/overlay/bin/cython to 755
2023-10-04T18:59:04,328     changing mode of /tmp/pip-build-env-z1khoyjn/overlay/bin/cythonize to 755
2023-10-04T18:59:04,354   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-04T18:59:04,354   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-04T18:59:04,355   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-04T18:59:04,962   Installing build dependencies: finished with status 'done'
2023-10-04T18:59:04,967   Getting requirements to build wheel: started
2023-10-04T18:59:04,968   Running command Getting requirements to build wheel
2023-10-04T18:59:43,534   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,535   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,535   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,535   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-04T18:59:43,536   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T18:59:43,537   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-04T18:59:43,537   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-04T18:59:43,537   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-04T18:59:43,537   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-04T18:59:43,537   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-04T18:59:43,537   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-04T18:59:43,537   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-04T18:59:43,537   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-04T18:59:43,538   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-04T18:59:43,538   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-04T18:59:43,538   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-04T18:59:43,819   running egg_info
2023-10-04T18:59:43,825   writing moleculekit.egg-info/PKG-INFO
2023-10-04T18:59:43,828   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T18:59:43,830   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T18:59:43,832   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T18:59:43,855   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,856   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,857   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,858   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,859   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:43,859   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T18:59:43,871   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
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2023-10-04T18:59:45,088   Getting requirements to build wheel: finished with status 'done'
2023-10-04T18:59:45,103   Installing backend dependencies: started
2023-10-04T18:59:45,104   Running command pip subprocess to install backend dependencies
2023-10-04T18:59:46,347   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-04T18:59:46,911   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T18:59:47,264   Collecting wheel
2023-10-04T18:59:47,283     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-04T18:59:48,632   Installing collected packages: wheel
2023-10-04T18:59:48,851     Creating /tmp/pip-build-env-z1khoyjn/normal/bin
2023-10-04T18:59:48,853     changing mode of /tmp/pip-build-env-z1khoyjn/normal/bin/wheel to 755
2023-10-04T18:59:48,865   Successfully installed wheel-0.41.2
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2023-10-04T18:59:49,272   Created temporary directory: /tmp/pip-modern-metadata-gf8cowcq
2023-10-04T18:59:49,275   Preparing metadata (pyproject.toml): started
2023-10-04T18:59:49,276   Running command Preparing metadata (pyproject.toml)
2023-10-04T18:59:51,833   running dist_info
2023-10-04T18:59:51,835   creating /tmp/pip-modern-metadata-gf8cowcq/moleculekit.egg-info
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2023-10-04T18:59:51,880   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:51,880   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:51,880   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T18:59:51,881   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:51,881   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:51,881   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T18:59:51,881   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:51,888   reading manifest file '/tmp/pip-modern-metadata-gf8cowcq/moleculekit.egg-info/SOURCES.txt'
2023-10-04T18:59:51,890   reading manifest template 'MANIFEST.in'
2023-10-04T18:59:52,121   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T18:59:52,122   no previously-included directories found matching 'moleculekit/tests'
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2023-10-04T18:59:52,123   adding license file 'LICENSE'
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2023-10-04T18:59:52,143   creating '/tmp/pip-modern-metadata-gf8cowcq/moleculekit-1.7.15.dist-info'
2023-10-04T18:59:52,338   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-04T18:59:52,344   Source in /tmp/pip-wheel-xyte2e1j/moleculekit_a86360ce43ee4db4a3be1d46013a8ee1 has version 1.7.15, which satisfies requirement moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz
2023-10-04T18:59:52,345   Removed moleculekit==1.7.15 from https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz from build tracker '/tmp/pip-build-tracker-wzl_npdh'
2023-10-04T18:59:52,351 Created temporary directory: /tmp/pip-unpack-eo61fshv
2023-10-04T18:59:52,352 Created temporary directory: /tmp/pip-unpack-s1aty23h
2023-10-04T18:59:52,360 Building wheels for collected packages: moleculekit
2023-10-04T18:59:52,364   Created temporary directory: /tmp/pip-wheel-mi2fj18v
2023-10-04T18:59:52,364   Destination directory: /tmp/pip-wheel-mi2fj18v
2023-10-04T18:59:52,366   Building wheel for moleculekit (pyproject.toml): started
2023-10-04T18:59:52,367   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-04T18:59:54,584   running bdist_wheel
2023-10-04T18:59:54,600   running build
2023-10-04T18:59:54,601   running build_py
2023-10-04T18:59:54,608   creating build
2023-10-04T18:59:54,609   creating build/lib.linux-armv7l-cpython-39
2023-10-04T18:59:54,609   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,610   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,612   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,614   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,616   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,618   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,620   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,622   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,623   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,626   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,628   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,630   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,632   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,634   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,636   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,638   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,640   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,645   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,646   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,648   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,650   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,651   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:54,656   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T18:59:54,657   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T18:59:54,659   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T18:59:54,660   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T18:59:54,662   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T18:59:54,664   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T18:59:54,666   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T18:59:54,668   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T18:59:54,669   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T18:59:54,671   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T18:59:54,675   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,676   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,678   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,680   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,682   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,685   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,688   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,690   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,692   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,695   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,696   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,698   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,700   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,702   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,704   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,706   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T18:59:54,709   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T18:59:54,710   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T18:59:54,713   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T18:59:54,714   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T18:59:54,720   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,721   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,724   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,726   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,728   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,731   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,732   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,735   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,737   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,738   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,741   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,743   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,745   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,748   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T18:59:54,751   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,752   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,754   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,756   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,759   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,762   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,763   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T18:59:54,766   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T18:59:54,767   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T18:59:54,768   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T18:59:54,771   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T18:59:54,772   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T18:59:54,774   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T18:59:54,775   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T18:59:54,777   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T18:59:54,780   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T18:59:54,781   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T18:59:54,784   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T18:59:54,785   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T18:59:54,788   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T18:59:54,791   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T18:59:54,792   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T18:59:54,794   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T18:59:54,796   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T18:59:54,797   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T18:59:54,799   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T18:59:54,801   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T18:59:54,803   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T18:59:54,805   running egg_info
2023-10-04T18:59:54,810   writing moleculekit.egg-info/PKG-INFO
2023-10-04T18:59:54,813   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T18:59:54,815   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T18:59:54,816   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T18:59:54,829   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,829   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,829   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,830   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,831   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,832   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,833   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,834   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,835   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,836   dependency /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T18:59:54,842   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T18:59:54,851   reading manifest template 'MANIFEST.in'
2023-10-04T18:59:55,059   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T18:59:55,060   no previously-included directories found matching 'moleculekit/tests'
2023-10-04T18:59:55,061   no previously-included directories found matching 'package'
2023-10-04T18:59:55,061   adding license file 'LICENSE'
2023-10-04T18:59:55,078   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T18:59:55,088   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-04T18:59:55,088   !!

2023-10-04T18:59:55,088           ********************************************************************************
2023-10-04T18:59:55,088           ############################
2023-10-04T18:59:55,088           # Package would be ignored #
2023-10-04T18:59:55,088           ############################
2023-10-04T18:59:55,088           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-04T18:59:55,089           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,089           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,089           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-04T18:59:55,089           to the `packages` configuration field.

2023-10-04T18:59:55,089           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,089           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,090           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,090           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,090           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,090           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-04T18:59:55,090           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-04T18:59:55,091           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,091           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,091           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,091           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,091           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,092           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,092                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,092                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,092                 directory, all directories are treated like packages.
2023-10-04T18:59:55,092           ********************************************************************************

2023-10-04T18:59:55,092   !!
2023-10-04T18:59:55,092     check.warn(importable)
2023-10-04T18:59:55,093   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-04T18:59:55,093   !!

2023-10-04T18:59:55,093           ********************************************************************************
2023-10-04T18:59:55,093           ############################
2023-10-04T18:59:55,093           # Package would be ignored #
2023-10-04T18:59:55,093           ############################
2023-10-04T18:59:55,093           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-04T18:59:55,094           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,094           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,094           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-04T18:59:55,094           to the `packages` configuration field.

2023-10-04T18:59:55,094           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,094           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,094           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,095           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,095           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,095           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-04T18:59:55,095           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-04T18:59:55,095           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,096           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,096           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,096           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,096           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,096           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,097                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,097                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,097                 directory, all directories are treated like packages.
2023-10-04T18:59:55,097           ********************************************************************************

2023-10-04T18:59:55,097   !!
2023-10-04T18:59:55,097     check.warn(importable)
2023-10-04T18:59:55,097   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-04T18:59:55,097   !!

2023-10-04T18:59:55,098           ********************************************************************************
2023-10-04T18:59:55,098           ############################
2023-10-04T18:59:55,098           # Package would be ignored #
2023-10-04T18:59:55,098           ############################
2023-10-04T18:59:55,098           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-04T18:59:55,098           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,098           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,099           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-04T18:59:55,099           to the `packages` configuration field.

2023-10-04T18:59:55,099           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,099           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,099           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,099           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,100           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,100           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-04T18:59:55,100           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-04T18:59:55,100           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,100           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,100           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,101           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,101           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,101           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,101                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,101                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,101                 directory, all directories are treated like packages.
2023-10-04T18:59:55,102           ********************************************************************************

2023-10-04T18:59:55,102   !!
2023-10-04T18:59:55,102     check.warn(importable)
2023-10-04T18:59:55,102   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-04T18:59:55,102   !!

2023-10-04T18:59:55,102           ********************************************************************************
2023-10-04T18:59:55,102           ############################
2023-10-04T18:59:55,103           # Package would be ignored #
2023-10-04T18:59:55,103           ############################
2023-10-04T18:59:55,103           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-04T18:59:55,103           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,103           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,103           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-04T18:59:55,103           to the `packages` configuration field.

2023-10-04T18:59:55,104           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,104           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,104           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,104           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,104           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,105           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-04T18:59:55,105           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-04T18:59:55,105           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,105           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,105           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,105           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,105           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,106           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,106                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,106                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,106                 directory, all directories are treated like packages.
2023-10-04T18:59:55,106           ********************************************************************************

2023-10-04T18:59:55,106   !!
2023-10-04T18:59:55,107     check.warn(importable)
2023-10-04T18:59:55,107   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-04T18:59:55,107   !!

2023-10-04T18:59:55,107           ********************************************************************************
2023-10-04T18:59:55,107           ############################
2023-10-04T18:59:55,107           # Package would be ignored #
2023-10-04T18:59:55,107           ############################
2023-10-04T18:59:55,107           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-04T18:59:55,108           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,108           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,108           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-04T18:59:55,108           to the `packages` configuration field.

2023-10-04T18:59:55,108           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,108           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,108           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,109           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,109           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,109           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-04T18:59:55,109           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-04T18:59:55,109           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,109           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,110           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,110           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,110           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,110           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,111                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,111                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,111                 directory, all directories are treated like packages.
2023-10-04T18:59:55,111           ********************************************************************************

2023-10-04T18:59:55,111   !!
2023-10-04T18:59:55,111     check.warn(importable)
2023-10-04T18:59:55,111   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-04T18:59:55,112   !!

2023-10-04T18:59:55,112           ********************************************************************************
2023-10-04T18:59:55,112           ############################
2023-10-04T18:59:55,112           # Package would be ignored #
2023-10-04T18:59:55,112           ############################
2023-10-04T18:59:55,112           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-04T18:59:55,112           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,113           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,113           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-04T18:59:55,113           to the `packages` configuration field.

2023-10-04T18:59:55,113           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,113           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,113           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,114           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,114           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,114           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-04T18:59:55,114           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-04T18:59:55,114           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,114           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,114           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,115           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,115           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,115           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,115                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,115                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,115                 directory, all directories are treated like packages.
2023-10-04T18:59:55,116           ********************************************************************************

2023-10-04T18:59:55,116   !!
2023-10-04T18:59:55,116     check.warn(importable)
2023-10-04T18:59:55,116   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-04T18:59:55,116   !!

2023-10-04T18:59:55,116           ********************************************************************************
2023-10-04T18:59:55,116           ############################
2023-10-04T18:59:55,117           # Package would be ignored #
2023-10-04T18:59:55,117           ############################
2023-10-04T18:59:55,117           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-04T18:59:55,117           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,117           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,117           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-04T18:59:55,117           to the `packages` configuration field.

2023-10-04T18:59:55,118           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,118           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,118           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,118           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,118           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,118           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-04T18:59:55,118           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-04T18:59:55,119           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,119           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,119           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,119           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,119           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,120           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,120                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,120                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,120                 directory, all directories are treated like packages.
2023-10-04T18:59:55,120           ********************************************************************************

2023-10-04T18:59:55,120   !!
2023-10-04T18:59:55,120     check.warn(importable)
2023-10-04T18:59:55,121   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-04T18:59:55,121   !!

2023-10-04T18:59:55,121           ********************************************************************************
2023-10-04T18:59:55,121           ############################
2023-10-04T18:59:55,121           # Package would be ignored #
2023-10-04T18:59:55,121           ############################
2023-10-04T18:59:55,121           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-04T18:59:55,121           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,122           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,122           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-04T18:59:55,122           to the `packages` configuration field.

2023-10-04T18:59:55,122           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,122           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,122           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,123           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,123           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,123           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-04T18:59:55,123           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-04T18:59:55,123           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,123           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,123           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,124           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,124           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,124           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,124                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,124                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,124                 directory, all directories are treated like packages.
2023-10-04T18:59:55,125           ********************************************************************************

2023-10-04T18:59:55,125   !!
2023-10-04T18:59:55,125     check.warn(importable)
2023-10-04T18:59:55,125   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-04T18:59:55,125   !!

2023-10-04T18:59:55,125           ********************************************************************************
2023-10-04T18:59:55,125           ############################
2023-10-04T18:59:55,126           # Package would be ignored #
2023-10-04T18:59:55,126           ############################
2023-10-04T18:59:55,126           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-04T18:59:55,126           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,126           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,126           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-04T18:59:55,126           to the `packages` configuration field.

2023-10-04T18:59:55,127           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,127           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,127           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,127           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,127           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,127           If you don't want 'moleculekit.share' to be distributed and are
2023-10-04T18:59:55,128           already explicitly excluding 'moleculekit.share' via
2023-10-04T18:59:55,128           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,128           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,128           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,128           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,128           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,129           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,129                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,129                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,129                 directory, all directories are treated like packages.
2023-10-04T18:59:55,129           ********************************************************************************

2023-10-04T18:59:55,129   !!
2023-10-04T18:59:55,130     check.warn(importable)
2023-10-04T18:59:55,130   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-04T18:59:55,130   !!

2023-10-04T18:59:55,130           ********************************************************************************
2023-10-04T18:59:55,130           ############################
2023-10-04T18:59:55,130           # Package would be ignored #
2023-10-04T18:59:55,131           ############################
2023-10-04T18:59:55,131           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-04T18:59:55,131           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,131           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,131           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-04T18:59:55,131           to the `packages` configuration field.

2023-10-04T18:59:55,132           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,132           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,132           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,132           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,132           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,133           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-04T18:59:55,133           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-04T18:59:55,133           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,133           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,133           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,133           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,134           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,134           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,134                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,134                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,134                 directory, all directories are treated like packages.
2023-10-04T18:59:55,135           ********************************************************************************

2023-10-04T18:59:55,135   !!
2023-10-04T18:59:55,135     check.warn(importable)
2023-10-04T18:59:55,135   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-04T18:59:55,135   !!

2023-10-04T18:59:55,135           ********************************************************************************
2023-10-04T18:59:55,136           ############################
2023-10-04T18:59:55,136           # Package would be ignored #
2023-10-04T18:59:55,136           ############################
2023-10-04T18:59:55,136           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-04T18:59:55,136           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,136           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,136           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-04T18:59:55,137           to the `packages` configuration field.

2023-10-04T18:59:55,137           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,137           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,137           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,137           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,137           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,138           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-04T18:59:55,138           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-04T18:59:55,138           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,138           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,138           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,138           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,139           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,139           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,139                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,139                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,139                 directory, all directories are treated like packages.
2023-10-04T18:59:55,139           ********************************************************************************

2023-10-04T18:59:55,140   !!
2023-10-04T18:59:55,140     check.warn(importable)
2023-10-04T18:59:55,140   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-04T18:59:55,140   !!

2023-10-04T18:59:55,140           ********************************************************************************
2023-10-04T18:59:55,140           ############################
2023-10-04T18:59:55,141           # Package would be ignored #
2023-10-04T18:59:55,141           ############################
2023-10-04T18:59:55,141           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-04T18:59:55,141           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,141           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,141           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-04T18:59:55,141           to the `packages` configuration field.

2023-10-04T18:59:55,142           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,142           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,142           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,142           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,143           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,143           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-04T18:59:55,143           already explicitly excluding 'moleculekit.tmalign' via
2023-10-04T18:59:55,143           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,143           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,143           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,144           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,144           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,144           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,145                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,145                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,145                 directory, all directories are treated like packages.
2023-10-04T18:59:55,145           ********************************************************************************

2023-10-04T18:59:55,145   !!
2023-10-04T18:59:55,145     check.warn(importable)
2023-10-04T18:59:55,146   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-04T18:59:55,146   !!

2023-10-04T18:59:55,146           ********************************************************************************
2023-10-04T18:59:55,146           ############################
2023-10-04T18:59:55,146           # Package would be ignored #
2023-10-04T18:59:55,146           ############################
2023-10-04T18:59:55,146           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-04T18:59:55,147           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,147           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,147           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-04T18:59:55,147           to the `packages` configuration field.

2023-10-04T18:59:55,148           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,148           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,148           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,148           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,148           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,149           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-04T18:59:55,149           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-04T18:59:55,150           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,150           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,150           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,150           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,151           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,151           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,152                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,152                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,152                 directory, all directories are treated like packages.
2023-10-04T18:59:55,152           ********************************************************************************

2023-10-04T18:59:55,152   !!
2023-10-04T18:59:55,152     check.warn(importable)
2023-10-04T18:59:55,153   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-04T18:59:55,153   !!

2023-10-04T18:59:55,153           ********************************************************************************
2023-10-04T18:59:55,153           ############################
2023-10-04T18:59:55,153           # Package would be ignored #
2023-10-04T18:59:55,153           ############################
2023-10-04T18:59:55,154           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-04T18:59:55,154           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,154           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,154           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-04T18:59:55,154           to the `packages` configuration field.

2023-10-04T18:59:55,155           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,155           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,155           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,155           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,156           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,156           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-04T18:59:55,156           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-04T18:59:55,156           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,156           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,156           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,157           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,157           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,157           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,157                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,157                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,157                 directory, all directories are treated like packages.
2023-10-04T18:59:55,158           ********************************************************************************

2023-10-04T18:59:55,158   !!
2023-10-04T18:59:55,158     check.warn(importable)
2023-10-04T18:59:55,158   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-04T18:59:55,158   !!

2023-10-04T18:59:55,158           ********************************************************************************
2023-10-04T18:59:55,159           ############################
2023-10-04T18:59:55,159           # Package would be ignored #
2023-10-04T18:59:55,159           ############################
2023-10-04T18:59:55,159           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-04T18:59:55,159           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,159           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,159           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-04T18:59:55,159           to the `packages` configuration field.

2023-10-04T18:59:55,160           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,160           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,160           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,160           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,160           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,161           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-04T18:59:55,161           already explicitly excluding 'moleculekit.wrapping' via
2023-10-04T18:59:55,161           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,161           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,161           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,161           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,162           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,162           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,162                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,162                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,163                 directory, all directories are treated like packages.
2023-10-04T18:59:55,163           ********************************************************************************

2023-10-04T18:59:55,163   !!
2023-10-04T18:59:55,163     check.warn(importable)
2023-10-04T18:59:55,163   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-04T18:59:55,164   !!

2023-10-04T18:59:55,164           ********************************************************************************
2023-10-04T18:59:55,164           ############################
2023-10-04T18:59:55,164           # Package would be ignored #
2023-10-04T18:59:55,164           ############################
2023-10-04T18:59:55,164           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-04T18:59:55,165           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,165           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,165           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-04T18:59:55,165           to the `packages` configuration field.

2023-10-04T18:59:55,165           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,166           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,166           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,166           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,166           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,167           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-04T18:59:55,167           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-04T18:59:55,167           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,167           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,167           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,167           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,167           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,168           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,168                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,168                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,168                 directory, all directories are treated like packages.
2023-10-04T18:59:55,168           ********************************************************************************

2023-10-04T18:59:55,169   !!
2023-10-04T18:59:55,169     check.warn(importable)
2023-10-04T18:59:55,169   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-04T18:59:55,169   !!

2023-10-04T18:59:55,169           ********************************************************************************
2023-10-04T18:59:55,169           ############################
2023-10-04T18:59:55,169           # Package would be ignored #
2023-10-04T18:59:55,169           ############################
2023-10-04T18:59:55,170           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-04T18:59:55,170           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,170           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,170           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-04T18:59:55,170           to the `packages` configuration field.

2023-10-04T18:59:55,170           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,171           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,172           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,172           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,172           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,173           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-04T18:59:55,173           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-04T18:59:55,173           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,173           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,173           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,174           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,174           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,174           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,174                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,175                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,175                 directory, all directories are treated like packages.
2023-10-04T18:59:55,175           ********************************************************************************

2023-10-04T18:59:55,175   !!
2023-10-04T18:59:55,175     check.warn(importable)
2023-10-04T18:59:55,175   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-04T18:59:55,175   !!

2023-10-04T18:59:55,176           ********************************************************************************
2023-10-04T18:59:55,176           ############################
2023-10-04T18:59:55,176           # Package would be ignored #
2023-10-04T18:59:55,176           ############################
2023-10-04T18:59:55,176           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-04T18:59:55,176           but it is absent from setuptools' `packages` configuration.

2023-10-04T18:59:55,177           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T18:59:55,177           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-04T18:59:55,177           to the `packages` configuration field.

2023-10-04T18:59:55,177           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T18:59:55,177           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T18:59:55,177           instead of `find_packages(...)`/`find:`).

2023-10-04T18:59:55,178           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T18:59:55,178           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T18:59:55,178           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-04T18:59:55,178           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-04T18:59:55,178           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T18:59:55,179           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T18:59:55,179           combination with a more fine grained `package-data` configuration.

2023-10-04T18:59:55,179           You can read more about "package data files" on setuptools documentation page:

2023-10-04T18:59:55,179           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T18:59:55,180           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T18:59:55,180                 even if it does not contain any `.py` files.
2023-10-04T18:59:55,180                 On the other hand, currently there is no concept of package data
2023-10-04T18:59:55,180                 directory, all directories are treated like packages.
2023-10-04T18:59:55,180           ********************************************************************************

2023-10-04T18:59:55,180   !!
2023-10-04T18:59:55,181     check.warn(importable)
2023-10-04T18:59:55,181   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:55,181   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:55,181   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T18:59:55,181   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T18:59:55,181   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T18:59:55,181   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T18:59:55,182   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T18:59:55,194   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T18:59:55,196   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T18:59:55,196   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T18:59:55,228   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T18:59:55,230   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T18:59:55,231   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T18:59:55,250   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T18:59:55,252   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T18:59:55,253   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T18:59:55,255   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T18:59:55,257   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T18:59:55,461   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T18:59:55,462   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T18:59:55,464   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-04T18:59:55,464   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,465   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,467   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,469   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,472   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,473   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,475   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,477   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,479   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,482   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,483   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,485   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,487   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,489   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,491   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,493   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,495   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,497   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,499   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,501   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,503   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,505   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,507   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,509   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,511   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,513   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,515   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,516   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,518   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,520   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,522   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,524   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,526   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,528   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,530   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,532   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,534   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,536   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,538   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,539   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,542   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,543   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,545   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,547   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,549   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,551   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,553   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,555   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,557   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,559   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,561   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,563   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,565   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,567   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,569   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,570   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,572   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,574   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,576   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,578   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,580   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,582   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,584   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,586   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,587   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,589   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,592   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,593   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,595   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,597   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,599   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,601   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,603   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,604   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,606   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,608   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,610   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,612   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,614   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,615   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,617   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,619   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,621   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,623   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,625   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,627   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,629   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,631   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,633   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,634   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,636   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,638   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,640   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,642   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,644   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,646   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,648   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,650   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,652   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,654   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,656   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,657   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,659   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,661   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,663   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,665   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,667   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,669   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,670   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,672   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,674   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,676   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,678   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,679   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,682   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,683   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,685   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,687   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,689   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,691   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,693   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,694   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,696   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,698   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,700   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,702   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,704   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,706   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,708   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,710   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,712   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,713   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,715   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,717   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,719   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,721   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,723   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,724   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,727   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,728   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,730   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,732   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,734   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,736   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,738   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,739   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,741   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,743   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,745   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,747   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,748   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,750   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,752   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,754   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,756   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,757   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,760   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,762   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,764   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,765   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,767   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,769   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,771   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,773   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,775   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,776   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,778   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,780   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,782   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,784   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,785   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,787   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,789   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,791   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,793   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,795   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T18:59:55,796   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T18:59:55,797   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T18:59:55,815   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T18:59:55,817   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T18:59:55,819   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T18:59:55,820   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T18:59:55,822   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T18:59:55,823   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T18:59:55,829   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T18:59:55,830   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T18:59:55,855   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T18:59:55,857   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T18:59:55,858   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T18:59:55,885   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T18:59:55,887   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T18:59:55,888   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T18:59:55,889   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T18:59:55,892   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T18:59:55,894   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T18:59:55,896   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T18:59:55,896   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T18:59:55,900   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T18:59:55,902   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T18:59:55,904   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T18:59:55,905   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T18:59:55,924   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T18:59:55,926   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T18:59:55,927   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T18:59:55,955   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T18:59:55,957   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T18:59:55,958   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T18:59:55,985   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T18:59:55,987   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T18:59:55,988   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T18:59:56,009   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T18:59:56,021   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T18:59:56,021   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.15'
2023-10-04T18:59:56,021   running build_ext
2023-10-04T18:59:56,033   building 'moleculekit.interactions.hbonds' extension
2023-10-04T18:59:56,034   creating build/temp.linux-armv7l-cpython-39
2023-10-04T18:59:56,034   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-04T18:59:56,035   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T18:59:56,036   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T18:59:56,037   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-04T18:59:56,306   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T18:59:56,306                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T18:59:56,306                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T18:59:56,306                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-04T18:59:56,307   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T18:59:56,307      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T18:59:56,307         |  ^~~~~~~
2023-10-04T19:00:22,355   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:00:22,672   building 'moleculekit.interactions.pipi' extension
2023-10-04T19:00:22,673   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T19:00:22,674   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-04T19:00:22,900   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:00:22,901                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:00:22,901                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:00:22,901                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-04T19:00:22,901   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:00:22,901      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:00:22,901         |  ^~~~~~~
2023-10-04T19:00:50,890   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:00:51,207   building 'moleculekit.interactions.cationpi' extension
2023-10-04T19:00:51,208   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T19:00:51,208   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-04T19:00:51,439   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:00:51,439                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:00:51,439                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:00:51,439                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-04T19:00:51,440   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:00:51,440      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:00:51,440         |  ^~~~~~~
2023-10-04T19:01:19,113   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:01:19,440   building 'moleculekit.interactions.sigmahole' extension
2023-10-04T19:01:19,441   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T19:01:19,442   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-04T19:01:19,673   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:01:19,674                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:01:19,674                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:01:19,674                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-04T19:01:19,674   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:01:19,674      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:01:19,674         |  ^~~~~~~
2023-10-04T19:01:46,826   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:01:47,152   building 'moleculekit.wrapping' extension
2023-10-04T19:01:47,153   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T19:01:47,154   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-04T19:01:47,382   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:01:47,382                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:01:47,383                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:01:47,383                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-04T19:01:47,383   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:01:47,383      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:01:47,383         |  ^~~~~~~
2023-10-04T19:02:11,178   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:02:11,390   building 'moleculekit.bondguesser_utils' extension
2023-10-04T19:02:11,390   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T19:02:11,391   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-04T19:02:11,625   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:02:11,625                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:02:11,625                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:02:11,625                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-04T19:02:11,626   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:02:11,626      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:02:11,626         |  ^~~~~~~
2023-10-04T19:02:13,180   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-04T19:02:13,181   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T19:02:13,181   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-04T19:02:13,181         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T19:02:13,181   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T19:02:13,182   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-04T19:02:13,182         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T19:02:13,182   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T19:02:13,182   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-04T19:02:13,183         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T19:02:13,183   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,183   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,184         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,184   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T19:02:13,185         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,185   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,185   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,185         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,186   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,186   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,186         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,187   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T19:02:13,187         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,188   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,188   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,188         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,189   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,189   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,189         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,190   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T19:02:13,190         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,191   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,191   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,191         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,192   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,192   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,192         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,193   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,193   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,193         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,194   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,194   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,194         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,195   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,195   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,196         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,196   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,196   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T19:02:13,196         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,197   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,197   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,197         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,198   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,198   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T19:02:13,198         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,199   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,199   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,199         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,200   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,200   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T19:02:13,200         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,201   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,201   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,201         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,202   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T19:02:13,202   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T19:02:13,202         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,222   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-04T19:02:13,222   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T19:02:13,222   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-04T19:02:13,222         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-04T19:02:13,223   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T19:02:13,223   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-04T19:02:13,223         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T19:02:36,209   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:02:36,506   building 'moleculekit.atomselect_utils' extension
2023-10-04T19:02:36,507   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T19:02:36,507   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-04T19:02:36,746   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:02:36,747                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:02:36,747                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:02:36,747                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-04T19:02:36,747   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:02:36,747      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:02:36,747         |  ^~~~~~~
2023-10-04T19:02:38,518   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-04T19:02:38,519   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T19:02:38,519   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-04T19:02:38,519         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T19:02:38,525   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T19:02:38,525   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T19:02:38,526   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T19:02:38,526         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T19:02:38,531   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T19:02:38,531   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T19:02:38,532   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T19:02:38,532         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T19:03:08,983   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:03:09,317   building 'moleculekit.distance_utils' extension
2023-10-04T19:03:09,318   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T19:03:09,318   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-04T19:03:09,548   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:03:09,549                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:03:09,549                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:03:09,549                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-04T19:03:09,549   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:03:09,549      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:03:09,549         |  ^~~~~~~
2023-10-04T19:03:41,657   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:03:41,992   building 'moleculekit.occupancy_utils' extension
2023-10-04T19:03:41,992   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T19:03:41,993   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-04T19:03:42,234   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:03:42,234                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:03:42,234                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:03:42,235                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-04T19:03:42,235   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:03:42,235      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:03:42,235         |  ^~~~~~~
2023-10-04T19:04:05,145   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:04:05,354   building 'moleculekit.xtc' extension
2023-10-04T19:04:05,355   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T19:04:05,355   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T19:04:05,357   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-04T19:04:05,597   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,597      66 |  "OK",
2023-10-04T19:04:05,597         |  ^~~~
2023-10-04T19:04:05,597   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,598      67 |  "Header",
2023-10-04T19:04:05,598         |  ^~~~~~~~
2023-10-04T19:04:05,598   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,598      68 |  "String",
2023-10-04T19:04:05,598         |  ^~~~~~~~
2023-10-04T19:04:05,598   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,599      69 |  "Double",
2023-10-04T19:04:05,599         |  ^~~~~~~~
2023-10-04T19:04:05,599   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,599      70 |  "Integer",
2023-10-04T19:04:05,599         |  ^~~~~~~~~
2023-10-04T19:04:05,599   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,600      71 |  "Float",
2023-10-04T19:04:05,600         |  ^~~~~~~
2023-10-04T19:04:05,600   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,600      72 |  "Unsigned integer",
2023-10-04T19:04:05,600         |  ^~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,600   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,601      73 |  "Compressed 3D coordinate",
2023-10-04T19:04:05,601         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,601   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,601      74 |  "Closing file",
2023-10-04T19:04:05,601         |  ^~~~~~~~~~~~~~
2023-10-04T19:04:05,601   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,602      75 |  "Magic number",
2023-10-04T19:04:05,602         |  ^~~~~~~~~~~~~~
2023-10-04T19:04:05,602   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,602      76 |  "Not enough memory",
2023-10-04T19:04:05,602         |  ^~~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,602   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,603      77 |  "End of file",
2023-10-04T19:04:05,603         |  ^~~~~~~~~~~~~
2023-10-04T19:04:05,603   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T19:04:05,603      78 |  "File not found"
2023-10-04T19:04:05,603         |  ^~~~~~~~~~~~~~~~
2023-10-04T19:04:05,611   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-04T19:04:05,611   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,612     459 |     while (size >= num && num_of_bits < 32)
2023-10-04T19:04:05,612         |            ~~~~~^~~~~~
2023-10-04T19:04:05,613   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-04T19:04:05,613   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,613     505 |     while (bytes[num_of_bytes] >= num)
2023-10-04T19:04:05,613         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-04T19:04:05,616   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-04T19:04:05,616   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,616     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-04T19:04:05,616         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,617   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,617     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-04T19:04:05,617         |               ~~^~~~~~~~~~~~~~
2023-10-04T19:04:05,617   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,618     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-04T19:04:05,618         |               ~~^~~~~~~~~~~~~~~~
2023-10-04T19:04:05,619   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-04T19:04:05,619   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,619     664 |   if (lastbits < num_of_bits)
2023-10-04T19:04:05,620         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-04T19:04:05,623   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-04T19:04:05,624   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,624     785 |  if(size3>xfp->buf1size)
2023-10-04T19:04:05,624         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T19:04:05,625   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,625     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T19:04:05,626         |                   ^
2023-10-04T19:04:05,628   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,628     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,628         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,628   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,629     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,629         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,629   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,629     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,629         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,629   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,629     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,630         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,630   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,630     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,630         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,630   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,630     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T19:04:05,630         |        ~~~~~~~~~^~~~~~~~
2023-10-04T19:04:05,631   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,631     756 |  int smallidx,  minidx, maxidx;
2023-10-04T19:04:05,631         |                 ^~~~~~
2023-10-04T19:04:05,631   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,631     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T19:04:05,631         |                         ^~~~~~
2023-10-04T19:04:05,631   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T19:04:05,631     763 |  int errval=1;
2023-10-04T19:04:05,632         |      ^~~~~~
2023-10-04T19:04:05,632   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-04T19:04:05,632   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,633    1011 |  if(size3>xfp->buf1size)
2023-10-04T19:04:05,633         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T19:04:05,634   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,635    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T19:04:05,635         |                     ~~~~~~~~^~~~~~~
2023-10-04T19:04:05,635   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,635    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T19:04:05,635         |                    ~~~~~~~~^~~~~~~
2023-10-04T19:04:05,636   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,636    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T19:04:05,636         |                    ~~~~~~~~^~~~~~~
2023-10-04T19:04:05,637   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,637    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-04T19:04:05,638         |                  ^
2023-10-04T19:04:05,638   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,638    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T19:04:05,638         |                   ^
2023-10-04T19:04:05,641   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,642    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T19:04:05,642         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,642   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,642    1001 |  int errval;
2023-10-04T19:04:05,642         |      ^~~~~~
2023-10-04T19:04:05,645   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-04T19:04:05,645   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,645    1316 |  if(size3>xfp->buf1size)
2023-10-04T19:04:05,645         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T19:04:05,647   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,647    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T19:04:05,647         |                   ^
2023-10-04T19:04:05,650   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,650    1289 |  int smallidx,  maxidx, minidx;
2023-10-04T19:04:05,650         |                         ^~~~~~
2023-10-04T19:04:05,650   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,650    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T19:04:05,650         |                         ^~~~~~
2023-10-04T19:04:05,651   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T19:04:05,651    1297 |  int errval=1;
2023-10-04T19:04:05,651         |      ^~~~~~
2023-10-04T19:04:05,652   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-04T19:04:05,652   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,652    1513 |  if(size3>xfp->buf1size) {
2023-10-04T19:04:05,652         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T19:04:05,656   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,656    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-04T19:04:05,657         |                  ^
2023-10-04T19:04:05,657   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T19:04:05,657    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T19:04:05,657         |                   ^
2023-10-04T19:04:05,660   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T19:04:05,661    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T19:04:05,661         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T19:04:05,661   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T19:04:05,661    1504 |  int errval=1;
2023-10-04T19:04:05,661         |      ^~~~~~
2023-10-04T19:04:07,897   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-04T19:04:08,150   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-04T19:04:08,722   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-04T19:04:08,723   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T19:04:08,723     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-04T19:04:08,723         |      ^~~
2023-10-04T19:04:08,730   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-04T19:04:08,730   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T19:04:08,730     418 |  int nf3 = nframes * 3;
2023-10-04T19:04:08,730         |      ^~~
2023-10-04T19:04:08,735   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-04T19:04:08,736   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-04T19:04:08,736     491 |  int reading_index = 0;
2023-10-04T19:04:08,736         |      ^~~~~~~~~~~~~
2023-10-04T19:04:08,736   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-04T19:04:08,736     492 |  int writing_index = 0;
2023-10-04T19:04:08,736         |      ^~~~~~~~~~~~~
2023-10-04T19:04:09,491   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-04T19:04:09,724   In file included from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T19:04:09,724                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T19:04:09,724                    from /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T19:04:09,725                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-04T19:04:09,725   /tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T19:04:09,725      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T19:04:09,725         |  ^~~~~~~
2023-10-04T19:04:29,791   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:04:30,104   building 'moleculekit.tmalign' extension
2023-10-04T19:04:30,105   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T19:04:30,106   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T19:04:30,107   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-04T19:04:59,487   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-z1khoyjn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-04T19:05:17,997   In file included from /usr/include/c++/10/vector:72,
2023-10-04T19:05:17,997                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T19:05:17,997   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-04T19:05:17,997   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-04T19:05:17,997     426 |       vector<_Tp, _Alloc>::
2023-10-04T19:05:17,997         |       ^~~~~~~~~~~~~~~~~~~
2023-10-04T19:05:18,581   In file included from /usr/include/c++/10/vector:67,
2023-10-04T19:05:18,581                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T19:05:18,581   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-04T19:05:18,581   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T19:05:18,581    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T19:05:18,582         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T19:05:18,582   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T19:05:18,582    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T19:05:18,582         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T19:05:18,584   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T19:05:18,584    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T19:05:18,585         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T19:05:20,999   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-04T19:05:21,437   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T19:05:21,437   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.15'
2023-10-04T19:05:21,438   installing to build/bdist.linux-armv7l/wheel
2023-10-04T19:05:21,438   running install
2023-10-04T19:05:21,463   running install_lib
2023-10-04T19:05:21,469   creating build/bdist.linux-armv7l
2023-10-04T19:05:21,470   creating build/bdist.linux-armv7l/wheel
2023-10-04T19:05:21,472   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,475   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T19:05:21,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T19:05:21,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T19:05:21,496   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T19:05:21,498   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T19:05:21,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T19:05:21,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T19:05:21,503   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T19:05:21,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T19:05:21,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T19:05:21,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T19:05:21,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T19:05:21,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T19:05:21,513   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T19:05:21,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T19:05:21,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T19:05:21,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T19:05:21,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T19:05:21,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,527   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T19:05:21,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T19:05:21,530   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T19:05:21,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T19:05:21,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T19:05:21,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T19:05:21,561   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T19:05:21,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T19:05:21,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,633   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T19:05:21,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T19:05:21,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T19:05:21,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T19:05:21,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T19:05:21,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,647   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T19:05:21,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T19:05:21,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T19:05:21,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,681   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,683   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T19:05:21,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T19:05:21,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T19:05:21,705   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T19:05:21,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T19:05:21,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T19:05:21,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,774   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T19:05:21,775   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T19:05:21,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T19:05:21,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,831   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T19:05:21,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T19:05:21,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T19:05:21,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T19:05:21,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,939   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T19:05:21,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T19:05:21,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T19:05:21,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:21,972   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:21,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:22,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:22,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:22,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T19:05:22,010   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T19:05:22,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T19:05:22,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T19:05:22,042   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T19:05:22,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T19:05:22,045   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T19:05:22,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T19:05:22,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T19:05:22,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T19:05:22,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T19:05:22,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T19:05:22,074   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T19:05:22,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T19:05:22,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T19:05:22,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T19:05:22,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,101   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T19:05:22,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T19:05:22,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T19:05:22,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T19:05:22,111   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T19:05:22,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T19:05:22,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T19:05:22,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,184   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T19:05:22,219   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T19:05:22,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T19:05:22,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T19:05:22,225   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T19:05:22,226   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T19:05:22,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T19:05:22,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T19:05:22,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T19:05:22,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T19:05:22,468   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-04T19:05:22,472   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T19:05:22,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,836   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,850   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T19:05:22,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T19:05:22,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T19:05:22,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T19:05:22,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T19:05:22,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T19:05:22,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T19:05:22,899   running install_egg_info
2023-10-04T19:05:22,905   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.15-py3.9.egg-info
2023-10-04T19:05:22,918   running install_scripts
2023-10-04T19:05:22,968   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.15.dist-info/WHEEL
2023-10-04T19:05:22,971   creating '/tmp/pip-wheel-mi2fj18v/.tmp-20_khcfy/moleculekit-1.7.15-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-04T19:05:22,974   adding 'moleculekit/__init__.py'
2023-10-04T19:05:22,975   adding 'moleculekit/_version.py'
2023-10-04T19:05:22,977   adding 'moleculekit/align.py'
2023-10-04T19:05:23,326   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:23,338   adding 'moleculekit/bondguesser.py'
2023-10-04T19:05:23,577   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:23,585   adding 'moleculekit/config.py'
2023-10-04T19:05:23,587   adding 'moleculekit/dihedral.py'
2023-10-04T19:05:23,588   adding 'moleculekit/distance.py'
2023-10-04T19:05:23,893   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:23,904   adding 'moleculekit/home.py'
2023-10-04T19:05:23,905   adding 'moleculekit/logging.ini'
2023-10-04T19:05:23,919   adding 'moleculekit/molecule.py'
2023-10-04T19:05:24,145   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:24,154   adding 'moleculekit/opm.py'
2023-10-04T19:05:24,157   adding 'moleculekit/periodictable.py'
2023-10-04T19:05:24,158   adding 'moleculekit/pymolgraphics.py'
2023-10-04T19:05:24,160   adding 'moleculekit/rcsb.py'
2023-10-04T19:05:24,161   adding 'moleculekit/rdkitintegration.py'
2023-10-04T19:05:24,174   adding 'moleculekit/readers.py'
2023-10-04T19:05:24,778   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:24,802   adding 'moleculekit/util.py'
2023-10-04T19:05:24,803   adding 'moleculekit/version.py'
2023-10-04T19:05:24,805   adding 'moleculekit/viewer.py'
2023-10-04T19:05:24,806   adding 'moleculekit/vmd_wrapper'
2023-10-04T19:05:24,808   adding 'moleculekit/vmdgraphics.py'
2023-10-04T19:05:24,810   adding 'moleculekit/vmdviewer.py'
2023-10-04T19:05:25,041   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:25,053   adding 'moleculekit/writers.py'
2023-10-04T19:05:25,321   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:25,332   adding 'moleculekit/atomselect/__init__.py'
2023-10-04T19:05:25,333   adding 'moleculekit/atomselect/analyze.py'
2023-10-04T19:05:25,335   adding 'moleculekit/atomselect/atomselect.py'
2023-10-04T19:05:25,337   adding 'moleculekit/atomselect/languageparser.py'
2023-10-04T19:05:25,443   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-04T19:05:25,455   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-04T19:05:25,546   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-04T19:05:25,555   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-04T19:05:25,653   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-04T19:05:25,663   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-04T19:05:25,665   adding 'moleculekit/interactions/__init__.py'
2023-10-04T19:05:25,947   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:26,212   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:26,223   adding 'moleculekit/interactions/interactions.py'
2023-10-04T19:05:26,503   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:26,791   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T19:05:26,892   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-04T19:05:26,901   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-04T19:05:26,992   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-04T19:05:27,001   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-04T19:05:27,092   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-04T19:05:27,101   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-04T19:05:27,193   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-04T19:05:27,202   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-04T19:05:27,288   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-04T19:05:27,297   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-04T19:05:27,298   adding 'moleculekit/pdbx/__init__.py'
2023-10-04T19:05:27,302   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-04T19:05:27,305   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-04T19:05:27,307   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-04T19:05:27,308   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-04T19:05:27,310   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-04T19:05:27,312   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-04T19:05:27,313   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-04T19:05:27,314   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-04T19:05:27,317   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-04T19:05:27,318   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-04T19:05:27,319   adding 'moleculekit/ply/__init__.py'
2023-10-04T19:05:27,324   adding 'moleculekit/ply/lex.py'
2023-10-04T19:05:27,335   adding 'moleculekit/ply/yacc.py'
2023-10-04T19:05:27,338   adding 'moleculekit/projections/__init__.py'
2023-10-04T19:05:27,340   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-04T19:05:27,343   adding 'moleculekit/projections/metricdihedral.py'
2023-10-04T19:05:27,347   adding 'moleculekit/projections/metricdistance.py'
2023-10-04T19:05:27,349   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-04T19:05:27,351   adding 'moleculekit/projections/metricgyration.py'
2023-10-04T19:05:27,355   adding 'moleculekit/projections/metricplumed2.py'
2023-10-04T19:05:27,356   adding 'moleculekit/projections/metricrmsd.py'
2023-10-04T19:05:27,358   adding 'moleculekit/projections/metricsasa.py'
2023-10-04T19:05:27,360   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-04T19:05:27,362   adding 'moleculekit/projections/metricshell.py'
2023-10-04T19:05:27,364   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-04T19:05:27,365   adding 'moleculekit/projections/metrictmscore.py'
2023-10-04T19:05:27,367   adding 'moleculekit/projections/projection.py'
2023-10-04T19:05:27,368   adding 'moleculekit/projections/util.py'
2023-10-04T19:05:27,370   adding 'moleculekit/share/ALA.cif'
2023-10-04T19:05:27,372   adding 'moleculekit/share/backbone.cif'
2023-10-04T19:05:28,676   adding 'moleculekit/share/opm_sequences.json'
2023-10-04T19:05:28,761   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-04T19:05:28,766   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-04T19:05:28,767   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-04T19:05:28,768   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-04T19:05:28,769   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-04T19:05:28,771   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-04T19:05:28,772   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-04T19:05:28,773   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-04T19:05:28,774   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-04T19:05:28,776   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-04T19:05:28,777   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-04T19:05:28,778   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-04T19:05:28,779   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-04T19:05:28,781   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-04T19:05:28,782   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-04T19:05:28,783   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-04T19:05:28,784   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-04T19:05:28,785   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-04T19:05:28,787   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-04T19:05:28,788   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-04T19:05:28,789   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-04T19:05:28,790   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-04T19:05:28,792   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-04T19:05:28,793   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-04T19:05:28,794   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-04T19:05:28,795   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-04T19:05:28,796   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-04T19:05:28,798   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-04T19:05:28,799   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-04T19:05:28,800   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-04T19:05:28,801   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-04T19:05:28,802   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-04T19:05:28,804   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-04T19:05:28,805   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-04T19:05:28,806   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-04T19:05:28,807   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-04T19:05:28,808   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-04T19:05:28,810   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-04T19:05:28,811   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-04T19:05:28,812   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-04T19:05:28,813   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-04T19:05:28,815   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-04T19:05:28,816   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-04T19:05:28,817   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-04T19:05:28,818   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-04T19:05:28,820   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-04T19:05:28,821   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-04T19:05:28,822   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-04T19:05:28,823   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-04T19:05:28,824   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-04T19:05:28,826   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-04T19:05:28,827   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-04T19:05:28,828   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-04T19:05:28,829   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-04T19:05:28,831   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-04T19:05:28,832   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-04T19:05:28,833   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-04T19:05:28,834   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-04T19:05:28,835   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-04T19:05:28,837   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-04T19:05:28,838   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-04T19:05:28,839   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-04T19:05:28,840   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-04T19:05:28,842   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-04T19:05:28,843   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-04T19:05:28,844   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-04T19:05:28,845   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-04T19:05:28,847   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-04T19:05:28,848   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-04T19:05:28,849   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-04T19:05:28,850   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-04T19:05:28,851   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-04T19:05:28,852   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-04T19:05:28,854   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-04T19:05:28,855   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-04T19:05:28,856   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-04T19:05:28,857   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-04T19:05:28,858   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-04T19:05:28,860   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-04T19:05:28,861   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-04T19:05:28,862   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-04T19:05:28,863   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-04T19:05:28,865   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-04T19:05:28,866   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-04T19:05:28,867   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-04T19:05:28,868   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-04T19:05:28,869   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-04T19:05:28,871   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-04T19:05:28,872   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-04T19:05:28,874   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-04T19:05:28,875   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-04T19:05:28,876   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-04T19:05:28,878   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-04T19:05:28,879   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-04T19:05:28,881   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-04T19:05:28,882   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-04T19:05:28,883   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-04T19:05:28,884   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-04T19:05:28,886   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-04T19:05:28,887   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-04T19:05:28,888   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-04T19:05:28,889   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-04T19:05:28,891   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-04T19:05:28,892   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-04T19:05:28,893   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-04T19:05:28,894   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-04T19:05:28,895   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-04T19:05:28,897   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-04T19:05:28,898   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-04T19:05:28,899   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-04T19:05:28,900   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-04T19:05:28,901   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-04T19:05:28,903   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-04T19:05:28,904   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-04T19:05:28,905   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-04T19:05:28,906   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-04T19:05:28,908   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-04T19:05:28,909   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-04T19:05:28,910   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-04T19:05:28,912   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-04T19:05:28,913   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-04T19:05:28,914   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-04T19:05:28,916   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-04T19:05:28,917   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-04T19:05:28,918   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-04T19:05:28,922   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-04T19:05:28,923   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-04T19:05:28,924   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-04T19:05:28,926   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-04T19:05:28,927   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-04T19:05:28,928   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-04T19:05:28,930   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-04T19:05:28,931   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-04T19:05:28,932   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-04T19:05:28,933   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-04T19:05:28,935   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-04T19:05:28,936   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-04T19:05:28,937   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-04T19:05:28,938   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-04T19:05:28,940   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-04T19:05:28,941   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-04T19:05:28,942   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-04T19:05:28,943   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-04T19:05:28,945   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-04T19:05:28,946   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-04T19:05:28,947   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-04T19:05:28,948   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-04T19:05:28,950   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-04T19:05:28,951   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-04T19:05:28,952   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-04T19:05:28,953   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-04T19:05:28,955   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-04T19:05:28,956   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-04T19:05:28,957   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-04T19:05:28,959   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-04T19:05:28,961   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-04T19:05:28,962   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-04T19:05:28,963   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-04T19:05:28,965   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-04T19:05:28,966   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-04T19:05:28,968   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-04T19:05:28,969   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-04T19:05:28,970   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-04T19:05:28,971   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-04T19:05:28,973   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-04T19:05:28,974   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-04T19:05:28,975   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-04T19:05:28,976   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-04T19:05:28,977   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-04T19:05:28,979   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-04T19:05:28,980   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-04T19:05:28,981   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-04T19:05:28,982   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-04T19:05:28,984   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-04T19:05:28,985   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-04T19:05:28,986   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-04T19:05:28,988   adding 'moleculekit/smallmol/__init__.py'
2023-10-04T19:05:28,993   adding 'moleculekit/smallmol/smallmol.py'
2023-10-04T19:05:28,996   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-04T19:05:28,998   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-04T19:05:28,999   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-04T19:05:29,001   adding 'moleculekit/smallmol/util.py'
2023-10-04T19:05:29,003   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-04T19:05:29,005   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-04T19:05:29,006   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-04T19:05:29,008   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-04T19:05:29,098   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-04T19:05:29,106   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-04T19:05:29,107   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-04T19:05:29,109   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-04T19:05:29,127   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-04T19:05:29,130   adding 'moleculekit/tools/__init__.py'
2023-10-04T19:05:29,132   adding 'moleculekit/tools/atomtyper.py'
2023-10-04T19:05:29,134   adding 'moleculekit/tools/autosegment.py'
2023-10-04T19:05:29,136   adding 'moleculekit/tools/crystalpacking.py'
2023-10-04T19:05:29,139   adding 'moleculekit/tools/detect.py'
2023-10-04T19:05:29,141   adding 'moleculekit/tools/docking.py'
2023-10-04T19:05:29,143   adding 'moleculekit/tools/graphalignment.py'
2023-10-04T19:05:29,144   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-04T19:05:29,146   adding 'moleculekit/tools/moleculechecks.py'
2023-10-04T19:05:29,152   adding 'moleculekit/tools/preparation.py'
2023-10-04T19:05:29,154   adding 'moleculekit/tools/preparation_customres.py'
2023-10-04T19:05:29,156   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-04T19:05:29,159   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-04T19:05:29,161   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-04T19:05:29,163   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-04T19:05:29,251   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-04T19:05:29,260   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-04T19:05:29,349   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-04T19:05:29,358   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-04T19:05:29,359   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-04T19:05:29,362   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-04T19:05:29,364   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-04T19:05:29,365   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-04T19:05:29,372   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-04T19:05:29,374   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-04T19:05:29,376   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-04T19:05:29,379   adding 'moleculekit-1.7.15.dist-info/LICENSE'
2023-10-04T19:05:29,380   adding 'moleculekit-1.7.15.dist-info/METADATA'
2023-10-04T19:05:29,381   adding 'moleculekit-1.7.15.dist-info/WHEEL'
2023-10-04T19:05:29,382   adding 'moleculekit-1.7.15.dist-info/top_level.txt'
2023-10-04T19:05:29,387   adding 'moleculekit-1.7.15.dist-info/RECORD'
2023-10-04T19:05:29,515   removing build/bdist.linux-armv7l/wheel
2023-10-04T19:05:29,786   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-04T19:05:30,080   Created wheel for moleculekit: filename=moleculekit-1.7.15-cp39-cp39-linux_armv7l.whl size=12538463 sha256=cba777f66f299de3b4f2442b6946b8f0c8f0abbf36c80e11b2ff2e2d3de613ba
2023-10-04T19:05:30,081   Stored in directory: /tmp/pip-ephem-wheel-cache-1ivpjebk/wheels/a1/1f/a8/8cede42f47da2114c1333e2c0185c6a0de761f848c3d479bad
2023-10-04T19:05:30,106 Successfully built moleculekit
2023-10-04T19:05:30,406 Removed build tracker: '/tmp/pip-build-tracker-wzl_npdh'