2023-10-04T20:20:21,971 Created temporary directory: /tmp/pip-build-tracker-mufwcm50
2023-10-04T20:20:21,972 Initialized build tracking at /tmp/pip-build-tracker-mufwcm50
2023-10-04T20:20:21,973 Created build tracker: /tmp/pip-build-tracker-mufwcm50
2023-10-04T20:20:21,973 Entered build tracker: /tmp/pip-build-tracker-mufwcm50
2023-10-04T20:20:21,974 Created temporary directory: /tmp/pip-wheel-j883qzww
2023-10-04T20:20:21,977 Created temporary directory: /tmp/pip-ephem-wheel-cache-zs1a32c0
2023-10-04T20:20:21,999 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T20:20:22,002 2 location(s) to search for versions of pyrepseq:
2023-10-04T20:20:22,002 * https://pypi.org/simple/pyrepseq/
2023-10-04T20:20:22,002 * https://www.piwheels.org/simple/pyrepseq/
2023-10-04T20:20:22,003 Fetching project page and analyzing links: https://pypi.org/simple/pyrepseq/
2023-10-04T20:20:22,004 Getting page https://pypi.org/simple/pyrepseq/
2023-10-04T20:20:22,006 Found index url https://pypi.org/simple/
2023-10-04T20:20:22,259 Fetched page https://pypi.org/simple/pyrepseq/ as application/vnd.pypi.simple.v1+json
2023-10-04T20:20:22,263   Found link https://files.pythonhosted.org/packages/2a/6e/d407f221827595d7c7c6c953fbce9cbe78539177fdafd66bd0d52e91c4ec/pyrepseq-0.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1
2023-10-04T20:20:22,263   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/5c/cd/8dba70272781c74c063534ea320b7cf0f2ff331c5cf82879e4ba5f4d486f/pyrepseq-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,264   Found link https://files.pythonhosted.org/packages/93/d2/f802eda9252735e6a9f7af211f04e8e80c0be5f9fc608b2cce3711706e02/pyrepseq-0.1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.1
2023-10-04T20:20:22,265   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d1/70/9e4c3a39f9b3f0bfbd18c59bd77d9238c94cb11261fbdbb586ca8cdd1fc1/pyrepseq-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,265   Found link https://files.pythonhosted.org/packages/6e/df/c15c0625921eba17f79e027967d3a015ec3997dc2b9f183e6630d91acab0/pyrepseq-0.1.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.2
2023-10-04T20:20:22,266   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/33/e1/4054c735bc4aca16b9613f3544b23d867980b98c17a1f67e9fa5d1f067c4/pyrepseq-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,268   Found link https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.3
2023-10-04T20:20:22,268   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b3/c7/7c52bc35a286936e52ed0245bf4b677204c805c8b8283c7b6877b6d9ea58/pyrepseq-1.0-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,269   Found link https://files.pythonhosted.org/packages/53/88/117c964bf05e99f446ee034cf644db7b38babb91c6c840fb877e68e3c715/pyrepseq-1.0.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.0
2023-10-04T20:20:22,270   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b8/dc/b6c4e3218eaf10b532e47dbf805b72306e8552f5bc5abdc26ce34dd3da69/pyrepseq-1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,270   Found link https://files.pythonhosted.org/packages/38/bb/4c7ec5857987459bdc64b7719ec97c4be8d4ea4c351107aba0e2d8cab594/pyrepseq-1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.1
2023-10-04T20:20:22,271   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d3/cf/b584a8f6511e29396c677a6f8c7f61568c1313315ff1da952a69af93c577/pyrepseq-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2023-10-04T20:20:22,272   Found link https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.2.1
2023-10-04T20:20:22,273 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrepseq/
2023-10-04T20:20:22,274 Getting page https://www.piwheels.org/simple/pyrepseq/
2023-10-04T20:20:22,275 Found index url https://www.piwheels.org/simple/
2023-10-04T20:20:22,458 Fetched page https://www.piwheels.org/simple/pyrepseq/ as text/html
2023-10-04T20:20:22,460   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.1-py3-none-any.whl#sha256=70461442abcbee78e7f4129129734b7fd33a3d2a409a1ed5f44f1c0929c62767 (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,461   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.0-py3-none-any.whl#sha256=e0ff1b66143de1d0c6a7695d6b73bb87d88015462b94678201bd60e43bae8574 (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,462   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.3-py3-none-any.whl#sha256=dd8c3b5497b6b416298f499b916cb5f25a0b4a95fa8c442781fecf097b2b39d4 (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,462   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.2-py3-none-any.whl#sha256=11d290404e581d46bf05739028106fb7fdc5cba61c4b27e7eb7f202a84780495 (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,463   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.1-py3-none-any.whl#sha256=ba09350e430a07ba4ea87b20d55a5c22879b48bb644f2fcbacd0a8fd6fe5c37c (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,463   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1-py3-none-any.whl#sha256=1bdb281f17e308d5eaa2580ceb8b2ec1faac7d29eda44a6727d2027b2c607e06 (from https://www.piwheels.org/simple/pyrepseq/)
2023-10-04T20:20:22,464 Skipping link: not a file: https://www.piwheels.org/simple/pyrepseq/
2023-10-04T20:20:22,464 Skipping link: not a file: https://pypi.org/simple/pyrepseq/
2023-10-04T20:20:22,485 Given no hashes to check 1 links for project 'pyrepseq': discarding no candidates
2023-10-04T20:20:22,504 Collecting pyrepseq==1.2.1
2023-10-04T20:20:22,506   Created temporary directory: /tmp/pip-unpack-xrfvpohc
2023-10-04T20:20:22,722   Downloading pyrepseq-1.2.1.tar.gz (24 kB)
2023-10-04T20:20:22,779   Added pyrepseq==1.2.1 from https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-mufwcm50'
2023-10-04T20:20:22,781   Running setup.py (path:/tmp/pip-wheel-j883qzww/pyrepseq_64e56d96b84047efa4bfc7a5fe9b6833/setup.py) egg_info for package pyrepseq
2023-10-04T20:20:22,782   Created temporary directory: /tmp/pip-pip-egg-info-666y3403
2023-10-04T20:20:22,783   Preparing metadata (setup.py): started
2023-10-04T20:20:22,784   Running command python setup.py egg_info
2023-10-04T20:20:23,836   running egg_info
2023-10-04T20:20:23,837   creating /tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info
2023-10-04T20:20:23,862   writing /tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/PKG-INFO
2023-10-04T20:20:23,866   writing dependency_links to /tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/dependency_links.txt
2023-10-04T20:20:23,868   writing requirements to /tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/requires.txt
2023-10-04T20:20:23,869   writing top-level names to /tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/top_level.txt
2023-10-04T20:20:23,871   writing manifest file '/tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/SOURCES.txt'
2023-10-04T20:20:23,953   reading manifest file '/tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/SOURCES.txt'
2023-10-04T20:20:23,955   adding license file 'LICENSE'
2023-10-04T20:20:23,956   writing manifest file '/tmp/pip-pip-egg-info-666y3403/pyrepseq.egg-info/SOURCES.txt'
2023-10-04T20:20:24,069   Preparing metadata (setup.py): finished with status 'done'
2023-10-04T20:20:24,073   Source in /tmp/pip-wheel-j883qzww/pyrepseq_64e56d96b84047efa4bfc7a5fe9b6833 has version 1.2.1, which satisfies requirement pyrepseq==1.2.1 from https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz
2023-10-04T20:20:24,074   Removed pyrepseq==1.2.1 from https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-mufwcm50'
2023-10-04T20:20:24,078 Created temporary directory: /tmp/pip-unpack-ypqea7ya
2023-10-04T20:20:24,079 Created temporary directory: /tmp/pip-unpack-zx5yzda6
2023-10-04T20:20:24,090 Building wheels for collected packages: pyrepseq
2023-10-04T20:20:24,094   Created temporary directory: /tmp/pip-wheel-y4semy6a
2023-10-04T20:20:24,095   Building wheel for pyrepseq (setup.py): started
2023-10-04T20:20:24,096   Destination directory: /tmp/pip-wheel-y4semy6a
2023-10-04T20:20:24,097   Running command python setup.py bdist_wheel
2023-10-04T20:20:25,109   running bdist_wheel
2023-10-04T20:20:25,241   running build
2023-10-04T20:20:25,242   running build_py
2023-10-04T20:20:25,270   creating build
2023-10-04T20:20:25,270   creating build/lib
2023-10-04T20:20:25,271   creating build/lib/pyrepseq
2023-10-04T20:20:25,273   copying pyrepseq/__init__.py -> build/lib/pyrepseq
2023-10-04T20:20:25,275   copying pyrepseq/distance.py -> build/lib/pyrepseq
2023-10-04T20:20:25,277   copying pyrepseq/nearest_neighbor.py -> build/lib/pyrepseq
2023-10-04T20:20:25,279   copying pyrepseq/plotting.py -> build/lib/pyrepseq
2023-10-04T20:20:25,282   copying pyrepseq/stats.py -> build/lib/pyrepseq
2023-10-04T20:20:25,284   copying pyrepseq/version.py -> build/lib/pyrepseq
2023-10-04T20:20:25,285   copying pyrepseq/util.py -> build/lib/pyrepseq
2023-10-04T20:20:25,287   copying pyrepseq/io.py -> build/lib/pyrepseq
2023-10-04T20:20:25,289   running egg_info
2023-10-04T20:20:25,314   writing pyrepseq.egg-info/PKG-INFO
2023-10-04T20:20:25,317   writing dependency_links to pyrepseq.egg-info/dependency_links.txt
2023-10-04T20:20:25,319   writing requirements to pyrepseq.egg-info/requires.txt
2023-10-04T20:20:25,320   writing top-level names to pyrepseq.egg-info/top_level.txt
2023-10-04T20:20:25,351   reading manifest file 'pyrepseq.egg-info/SOURCES.txt'
2023-10-04T20:20:25,353   adding license file 'LICENSE'
2023-10-04T20:20:25,355   writing manifest file 'pyrepseq.egg-info/SOURCES.txt'
2023-10-04T20:20:25,357   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyrepseq.data' is absent from the `packages` configuration.
2023-10-04T20:20:25,358   !!

2023-10-04T20:20:25,359           ********************************************************************************
2023-10-04T20:20:25,359           ############################
2023-10-04T20:20:25,360           # Package would be ignored #
2023-10-04T20:20:25,361           ############################
2023-10-04T20:20:25,361           Python recognizes 'pyrepseq.data' as an importable package[^1],
2023-10-04T20:20:25,362           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:20:25,363           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:20:25,363           package, please make sure that 'pyrepseq.data' is explicitly added
2023-10-04T20:20:25,364           to the `packages` configuration field.

2023-10-04T20:20:25,365           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:20:25,365           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:20:25,366           instead of `find_packages(...)`/`find:`).

2023-10-04T20:20:25,367           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:20:25,368           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:20:25,370           If you don't want 'pyrepseq.data' to be distributed and are
2023-10-04T20:20:25,370           already explicitly excluding 'pyrepseq.data' via
2023-10-04T20:20:25,371           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:20:25,371           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:20:25,371           combination with a more fine grained `package-data` configuration.

2023-10-04T20:20:25,372           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:20:25,373           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:20:25,374           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:20:25,375                 even if it does not contain any `.py` files.
2023-10-04T20:20:25,375                 On the other hand, currently there is no concept of package data
2023-10-04T20:20:25,376                 directory, all directories are treated like packages.
2023-10-04T20:20:25,376           ********************************************************************************

2023-10-04T20:20:25,377   !!
2023-10-04T20:20:25,378     check.warn(importable)
2023-10-04T20:20:25,378   creating build/lib/pyrepseq/data
2023-10-04T20:20:25,379   copying pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/lib/pyrepseq/data
2023-10-04T20:20:25,393   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-04T20:20:25,393   !!

2023-10-04T20:20:25,395           ********************************************************************************
2023-10-04T20:20:25,395           Please avoid running ``setup.py`` directly.
2023-10-04T20:20:25,396           Instead, use pypa/build, pypa/installer or other
2023-10-04T20:20:25,396           standards-based tools.

2023-10-04T20:20:25,397           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-04T20:20:25,398           ********************************************************************************

2023-10-04T20:20:25,399   !!
2023-10-04T20:20:25,399     self.initialize_options()
2023-10-04T20:20:25,420   installing to build/bdist.linux-armv7l/wheel
2023-10-04T20:20:25,421   running install
2023-10-04T20:20:25,444   running install_lib
2023-10-04T20:20:25,470   creating build/bdist.linux-armv7l
2023-10-04T20:20:25,470   creating build/bdist.linux-armv7l/wheel
2023-10-04T20:20:25,472   creating build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,473   copying build/lib/pyrepseq/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,475   copying build/lib/pyrepseq/distance.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,477   copying build/lib/pyrepseq/nearest_neighbor.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,479   copying build/lib/pyrepseq/plotting.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,482   copying build/lib/pyrepseq/stats.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,484   creating build/bdist.linux-armv7l/wheel/pyrepseq/data
2023-10-04T20:20:25,486   copying build/lib/pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/bdist.linux-armv7l/wheel/pyrepseq/data
2023-10-04T20:20:25,487   copying build/lib/pyrepseq/version.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,489   copying build/lib/pyrepseq/util.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,492   copying build/lib/pyrepseq/io.py -> build/bdist.linux-armv7l/wheel/pyrepseq
2023-10-04T20:20:25,493   running install_egg_info
2023-10-04T20:20:25,525   Copying pyrepseq.egg-info to build/bdist.linux-armv7l/wheel/pyrepseq-1.2.1-py3.11.egg-info
2023-10-04T20:20:25,535   running install_scripts
2023-10-04T20:20:25,549   creating build/bdist.linux-armv7l/wheel/pyrepseq-1.2.1.dist-info/WHEEL
2023-10-04T20:20:25,552   creating '/tmp/pip-wheel-y4semy6a/pyrepseq-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-04T20:20:25,554   adding 'pyrepseq/__init__.py'
2023-10-04T20:20:25,557   adding 'pyrepseq/distance.py'
2023-10-04T20:20:25,559   adding 'pyrepseq/io.py'
2023-10-04T20:20:25,561   adding 'pyrepseq/nearest_neighbor.py'
2023-10-04T20:20:25,564   adding 'pyrepseq/plotting.py'
2023-10-04T20:20:25,565   adding 'pyrepseq/stats.py'
2023-10-04T20:20:25,567   adding 'pyrepseq/util.py'
2023-10-04T20:20:25,569   adding 'pyrepseq/version.py'
2023-10-04T20:20:25,570   adding 'pyrepseq/data/pcdelta_pbmc_minervina.csv'
2023-10-04T20:20:25,572   adding 'pyrepseq-1.2.1.dist-info/LICENSE'
2023-10-04T20:20:25,573   adding 'pyrepseq-1.2.1.dist-info/METADATA'
2023-10-04T20:20:25,574   adding 'pyrepseq-1.2.1.dist-info/WHEEL'
2023-10-04T20:20:25,575   adding 'pyrepseq-1.2.1.dist-info/top_level.txt'
2023-10-04T20:20:25,576   adding 'pyrepseq-1.2.1.dist-info/RECORD'
2023-10-04T20:20:25,578   removing build/bdist.linux-armv7l/wheel
2023-10-04T20:20:25,697   Building wheel for pyrepseq (setup.py): finished with status 'done'
2023-10-04T20:20:25,700   Created wheel for pyrepseq: filename=pyrepseq-1.2.1-py3-none-any.whl size=24287 sha256=3827fdf914f3c447526b8d6444cb79f808d9f8ac052e7535b927b760d7c4677a
2023-10-04T20:20:25,701   Stored in directory: /tmp/pip-ephem-wheel-cache-zs1a32c0/wheels/f4/73/79/04fa36f4ac05eb9f3db690367937fec9710302b5a94479d413
2023-10-04T20:20:25,711 Successfully built pyrepseq
2023-10-04T20:20:25,715 Removed build tracker: '/tmp/pip-build-tracker-mufwcm50'