2023-10-04T20:34:27,103 Created temporary directory: /tmp/pip-build-tracker-jrprzl4l
2023-10-04T20:34:27,105 Initialized build tracking at /tmp/pip-build-tracker-jrprzl4l
2023-10-04T20:34:27,105 Created build tracker: /tmp/pip-build-tracker-jrprzl4l
2023-10-04T20:34:27,105 Entered build tracker: /tmp/pip-build-tracker-jrprzl4l
2023-10-04T20:34:27,106 Created temporary directory: /tmp/pip-wheel-4wqotv5x
2023-10-04T20:34:27,110 Created temporary directory: /tmp/pip-ephem-wheel-cache-9nnkkd98
2023-10-04T20:34:27,137 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T20:34:27,141 2 location(s) to search for versions of moleculekit:
2023-10-04T20:34:27,141 * https://pypi.org/simple/moleculekit/
2023-10-04T20:34:27,141 * https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:34:27,142 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-04T20:34:27,142 Getting page https://pypi.org/simple/moleculekit/
2023-10-04T20:34:27,144 Found index url https://pypi.org/simple/
2023-10-04T20:34:27,200 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-04T20:34:27,237   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,238   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-04T20:34:27,238   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,238   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-04T20:34:27,239   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,239   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-04T20:34:27,239   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,239   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-04T20:34:27,240   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,240   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-04T20:34:27,240   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,240   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-04T20:34:27,241   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,241   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-04T20:34:27,241   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,241   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-04T20:34:27,242   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,242   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-04T20:34:27,242   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,242   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-04T20:34:27,243   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,243   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-04T20:34:27,243   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,243   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-04T20:34:27,244   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,244   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-04T20:34:27,244   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,244   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-04T20:34:27,245   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,245   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-04T20:34:27,245   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,245   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-04T20:34:27,246   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,246   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-04T20:34:27,246   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,246   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-04T20:34:27,247   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,247   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-04T20:34:27,247   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,247   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-04T20:34:27,247   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,248   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-04T20:34:27,248   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,248   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-04T20:34:27,248   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,249   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-04T20:34:27,249   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,249   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-04T20:34:27,249   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,250   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-04T20:34:27,250   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,250   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-04T20:34:27,250   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,251   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-04T20:34:27,251   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,251   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-04T20:34:27,251   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,252   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-04T20:34:27,252   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,252   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-04T20:34:27,252   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,252   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-04T20:34:27,253   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,253   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-04T20:34:27,253   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:34:27,253   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-10-04T20:34:27,277   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2023-10-04T20:34:27,278   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-10-04T20:34:27,280   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2023-10-04T20:34:27,297   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-04T20:34:27,298   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-04T20:34:27,298   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-04T20:34:27,299   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-04T20:34:27,299   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-04T20:34:27,300   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-04T20:34:27,300   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-04T20:34:27,301   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-04T20:34:27,301   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-04T20:34:27,302   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-04T20:34:27,303   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-04T20:34:27,303   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-04T20:34:27,304   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-04T20:34:27,304   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-04T20:34:27,305 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:34:27,305 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:34:27,306 Found index url https://www.piwheels.org/simple/
2023-10-04T20:34:27,380 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-04T20:34:27,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,465   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,466   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,467   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,468   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,469   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,470   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,471   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,472   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,473   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,474   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,475   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,476   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:34:27,476   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:34:27,485   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:34:27,486   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:34:27,493 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:34:27,493 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-04T20:34:27,533 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-04T20:34:27,550 Collecting moleculekit==1.7.16
2023-10-04T20:34:27,552   Created temporary directory: /tmp/pip-unpack-r3cf34e1
2023-10-04T20:34:27,699   Downloading moleculekit-1.7.16.tar.gz (6.2 MB)
2023-10-04T20:34:30,163   Added moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz to build tracker '/tmp/pip-build-tracker-jrprzl4l'
2023-10-04T20:34:30,171   Created temporary directory: /tmp/pip-build-env-t615q2ak
2023-10-04T20:34:30,181   Installing build dependencies: started
2023-10-04T20:34:30,182   Running command pip subprocess to install build dependencies
2023-10-04T20:34:31,378   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-04T20:34:31,912   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T20:34:33,508   Collecting setuptools
2023-10-04T20:34:33,574     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-04T20:34:34,951   Collecting numpy>=1.18.5
2023-10-04T20:34:36,314     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-04T20:34:38,506   Collecting Cython>=0.29.21
2023-10-04T20:34:39,255     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-04T20:34:39,606   Collecting toml
2023-10-04T20:34:39,623     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-04T20:34:39,876   Collecting versioneer[toml]==0.28
2023-10-04T20:34:39,894     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-04T20:34:40,025   Collecting tomli (from versioneer[toml]==0.28)
2023-10-04T20:34:40,041     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-04T20:34:41,817   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-04T20:34:41,852     Creating /tmp/pip-build-env-t615q2ak/overlay/bin
2023-10-04T20:34:41,855     changing mode of /tmp/pip-build-env-t615q2ak/overlay/bin/versioneer to 755
2023-10-04T20:34:51,582     changing mode of /tmp/pip-build-env-t615q2ak/overlay/bin/f2py to 755
2023-10-04T20:34:55,138     changing mode of /tmp/pip-build-env-t615q2ak/overlay/bin/cygdb to 755
2023-10-04T20:34:55,141     changing mode of /tmp/pip-build-env-t615q2ak/overlay/bin/cython to 755
2023-10-04T20:34:55,143     changing mode of /tmp/pip-build-env-t615q2ak/overlay/bin/cythonize to 755
2023-10-04T20:34:55,169   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-04T20:34:55,170   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-04T20:34:55,171   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-04T20:34:55,789   Installing build dependencies: finished with status 'done'
2023-10-04T20:34:55,795   Getting requirements to build wheel: started
2023-10-04T20:34:55,796   Running command Getting requirements to build wheel
2023-10-04T20:35:34,409   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,410   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,411   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,411   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,411   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-04T20:35:34,411   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:35:34,411   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-04T20:35:34,411   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-04T20:35:34,411   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-04T20:35:34,411   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-04T20:35:34,411   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-04T20:35:34,412   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-04T20:35:34,412   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-04T20:35:34,412   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-04T20:35:34,412   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-04T20:35:34,412   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-04T20:35:34,412   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-04T20:35:34,700   running egg_info
2023-10-04T20:35:34,707   writing moleculekit.egg-info/PKG-INFO
2023-10-04T20:35:34,710   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T20:35:34,713   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T20:35:34,714   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T20:35:34,737   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,738   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,739   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,740   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,741   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,741   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:34,741   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T20:35:35,976   Running command pip subprocess to install backend dependencies
2023-10-04T20:35:37,221   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
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2023-10-04T20:35:40,143   Created temporary directory: /tmp/pip-modern-metadata-i812wwy3
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2023-10-04T20:35:40,146   Running command Preparing metadata (pyproject.toml)
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2023-10-04T20:35:43,014   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-04T20:35:43,020   Source in /tmp/pip-wheel-4wqotv5x/moleculekit_5b5bf091a75842f9b4e2f8174b36f515 has version 1.7.16, which satisfies requirement moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz
2023-10-04T20:35:43,021   Removed moleculekit==1.7.16 from https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz from build tracker '/tmp/pip-build-tracker-jrprzl4l'
2023-10-04T20:35:43,027 Created temporary directory: /tmp/pip-unpack-sjyj48yj
2023-10-04T20:35:43,028 Created temporary directory: /tmp/pip-unpack-sk7wiv5i
2023-10-04T20:35:43,036 Building wheels for collected packages: moleculekit
2023-10-04T20:35:43,040   Created temporary directory: /tmp/pip-wheel-c7km1fmn
2023-10-04T20:35:43,040   Destination directory: /tmp/pip-wheel-c7km1fmn
2023-10-04T20:35:43,042   Building wheel for moleculekit (pyproject.toml): started
2023-10-04T20:35:43,043   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-04T20:35:45,529   running bdist_wheel
2023-10-04T20:35:45,546   running build
2023-10-04T20:35:45,546   running build_py
2023-10-04T20:35:45,554   creating build
2023-10-04T20:35:45,554   creating build/lib.linux-armv7l-cpython-39
2023-10-04T20:35:45,555   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,556   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,558   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,560   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,562   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,564   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,566   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,568   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,570   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,573   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,575   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,577   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,579   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,582   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,583   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,585   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,588   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,592   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,594   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,596   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,597   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,599   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:45,605   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T20:35:45,606   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T20:35:45,608   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:35:45,609   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:35:45,611   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:35:45,613   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:35:45,615   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:35:45,618   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:35:45,619   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:35:45,620   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:35:45,624   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,625   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,628   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,630   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,632   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,634   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,637   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,639   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,641   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,645   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,646   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,648   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,650   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,652   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,654   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,657   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:35:45,659   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:35:45,660   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:35:45,663   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:35:45,665   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:35:45,671   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,672   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,674   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,676   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,679   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,681   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,683   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,685   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,688   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,690   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,692   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,694   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,696   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,699   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:35:45,702   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,703   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,705   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,707   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,709   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,712   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,714   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:35:45,716   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:35:45,717   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:35:45,718   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:35:45,721   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:35:45,722   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:35:45,724   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:35:45,726   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:35:45,727   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:35:45,731   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:35:45,732   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:35:45,735   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:35:45,736   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:35:45,739   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:35:45,742   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:35:45,742   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:35:45,744   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:35:45,747   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:35:45,747   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:35:45,749   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:35:45,751   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:35:45,753   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:35:45,755   running egg_info
2023-10-04T20:35:45,761   writing moleculekit.egg-info/PKG-INFO
2023-10-04T20:35:45,764   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T20:35:45,765   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T20:35:45,766   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T20:35:45,781   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,781   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,781   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,781   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,782   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,783   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,784   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,785   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,786   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,787   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,788   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,788   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,788   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,788   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,788   dependency /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:35:45,794   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:35:45,803   reading manifest template 'MANIFEST.in'
2023-10-04T20:35:46,028   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T20:35:46,029   no previously-included directories found matching 'moleculekit/tests'
2023-10-04T20:35:46,030   no previously-included directories found matching 'package'
2023-10-04T20:35:46,030   adding license file 'LICENSE'
2023-10-04T20:35:46,047   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:35:46,057   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-04T20:35:46,057   !!

2023-10-04T20:35:46,057           ********************************************************************************
2023-10-04T20:35:46,057           ############################
2023-10-04T20:35:46,057           # Package would be ignored #
2023-10-04T20:35:46,058           ############################
2023-10-04T20:35:46,058           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-04T20:35:46,058           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,058           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,058           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-04T20:35:46,058           to the `packages` configuration field.

2023-10-04T20:35:46,058           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,059           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,059           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,059           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,059           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,059           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-04T20:35:46,060           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-04T20:35:46,060           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,060           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,060           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,060           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,060           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,061           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,061                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,061                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,061                 directory, all directories are treated like packages.
2023-10-04T20:35:46,061           ********************************************************************************

2023-10-04T20:35:46,061   !!
2023-10-04T20:35:46,062     check.warn(importable)
2023-10-04T20:35:46,062   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-04T20:35:46,062   !!

2023-10-04T20:35:46,062           ********************************************************************************
2023-10-04T20:35:46,062           ############################
2023-10-04T20:35:46,062           # Package would be ignored #
2023-10-04T20:35:46,062           ############################
2023-10-04T20:35:46,063           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-04T20:35:46,063           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,063           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,063           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-04T20:35:46,063           to the `packages` configuration field.

2023-10-04T20:35:46,063           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,063           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,064           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,064           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,064           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,064           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-04T20:35:46,064           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-04T20:35:46,065           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,065           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,065           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,065           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,065           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,066           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,066                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,066                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,066                 directory, all directories are treated like packages.
2023-10-04T20:35:46,066           ********************************************************************************

2023-10-04T20:35:46,066   !!
2023-10-04T20:35:46,066     check.warn(importable)
2023-10-04T20:35:46,066   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-04T20:35:46,066   !!

2023-10-04T20:35:46,067           ********************************************************************************
2023-10-04T20:35:46,067           ############################
2023-10-04T20:35:46,067           # Package would be ignored #
2023-10-04T20:35:46,067           ############################
2023-10-04T20:35:46,067           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-04T20:35:46,067           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,067           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,068           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-04T20:35:46,068           to the `packages` configuration field.

2023-10-04T20:35:46,068           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,068           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,068           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,068           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,069           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,069           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-04T20:35:46,069           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-04T20:35:46,069           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,069           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,069           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,070           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,070           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,070           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,070                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,070                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,070                 directory, all directories are treated like packages.
2023-10-04T20:35:46,071           ********************************************************************************

2023-10-04T20:35:46,071   !!
2023-10-04T20:35:46,071     check.warn(importable)
2023-10-04T20:35:46,071   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-04T20:35:46,071   !!

2023-10-04T20:35:46,071           ********************************************************************************
2023-10-04T20:35:46,071           ############################
2023-10-04T20:35:46,072           # Package would be ignored #
2023-10-04T20:35:46,072           ############################
2023-10-04T20:35:46,072           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-04T20:35:46,072           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,072           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,072           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-04T20:35:46,072           to the `packages` configuration field.

2023-10-04T20:35:46,073           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,073           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,073           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,073           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,073           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,073           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-04T20:35:46,074           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-04T20:35:46,074           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,074           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,074           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,074           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,074           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,075           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,075                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,075                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,075                 directory, all directories are treated like packages.
2023-10-04T20:35:46,075           ********************************************************************************

2023-10-04T20:35:46,075   !!
2023-10-04T20:35:46,076     check.warn(importable)
2023-10-04T20:35:46,076   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-04T20:35:46,076   !!

2023-10-04T20:35:46,076           ********************************************************************************
2023-10-04T20:35:46,076           ############################
2023-10-04T20:35:46,076           # Package would be ignored #
2023-10-04T20:35:46,076           ############################
2023-10-04T20:35:46,076           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-04T20:35:46,076           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,077           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,077           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-04T20:35:46,077           to the `packages` configuration field.

2023-10-04T20:35:46,077           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,077           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,077           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,078           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,078           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,078           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-04T20:35:46,078           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-04T20:35:46,078           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,078           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,078           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,079           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,079           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,079           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,079                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,080                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,080                 directory, all directories are treated like packages.
2023-10-04T20:35:46,080           ********************************************************************************

2023-10-04T20:35:46,080   !!
2023-10-04T20:35:46,080     check.warn(importable)
2023-10-04T20:35:46,080   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-04T20:35:46,080   !!

2023-10-04T20:35:46,081           ********************************************************************************
2023-10-04T20:35:46,081           ############################
2023-10-04T20:35:46,081           # Package would be ignored #
2023-10-04T20:35:46,081           ############################
2023-10-04T20:35:46,081           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-04T20:35:46,081           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,081           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,082           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-04T20:35:46,082           to the `packages` configuration field.

2023-10-04T20:35:46,082           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,082           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,082           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,082           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,083           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,083           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-04T20:35:46,083           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-04T20:35:46,083           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,083           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,083           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,083           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,084           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,084           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,084                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,084                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,084                 directory, all directories are treated like packages.
2023-10-04T20:35:46,084           ********************************************************************************

2023-10-04T20:35:46,085   !!
2023-10-04T20:35:46,085     check.warn(importable)
2023-10-04T20:35:46,085   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-04T20:35:46,085   !!

2023-10-04T20:35:46,085           ********************************************************************************
2023-10-04T20:35:46,085           ############################
2023-10-04T20:35:46,085           # Package would be ignored #
2023-10-04T20:35:46,086           ############################
2023-10-04T20:35:46,086           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-04T20:35:46,086           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,086           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,086           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-04T20:35:46,086           to the `packages` configuration field.

2023-10-04T20:35:46,086           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,086           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,087           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,087           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,087           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,087           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-04T20:35:46,087           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-04T20:35:46,087           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,088           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,088           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,088           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,088           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,088           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,089                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,089                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,089                 directory, all directories are treated like packages.
2023-10-04T20:35:46,089           ********************************************************************************

2023-10-04T20:35:46,089   !!
2023-10-04T20:35:46,089     check.warn(importable)
2023-10-04T20:35:46,089   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-04T20:35:46,089   !!

2023-10-04T20:35:46,090           ********************************************************************************
2023-10-04T20:35:46,090           ############################
2023-10-04T20:35:46,090           # Package would be ignored #
2023-10-04T20:35:46,090           ############################
2023-10-04T20:35:46,090           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-04T20:35:46,090           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,091           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,091           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-04T20:35:46,091           to the `packages` configuration field.

2023-10-04T20:35:46,091           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,091           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,091           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,091           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,092           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,092           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-04T20:35:46,092           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-04T20:35:46,092           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,092           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,092           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,092           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,093           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,093           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,093                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,093                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,093                 directory, all directories are treated like packages.
2023-10-04T20:35:46,093           ********************************************************************************

2023-10-04T20:35:46,094   !!
2023-10-04T20:35:46,094     check.warn(importable)
2023-10-04T20:35:46,094   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-04T20:35:46,094   !!

2023-10-04T20:35:46,094           ********************************************************************************
2023-10-04T20:35:46,094           ############################
2023-10-04T20:35:46,094           # Package would be ignored #
2023-10-04T20:35:46,094           ############################
2023-10-04T20:35:46,095           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-04T20:35:46,095           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,095           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,095           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-04T20:35:46,095           to the `packages` configuration field.

2023-10-04T20:35:46,095           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,095           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,096           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,096           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,096           If you don't want 'moleculekit.share' to be distributed and are
2023-10-04T20:35:46,096           already explicitly excluding 'moleculekit.share' via
2023-10-04T20:35:46,096           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,097           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,097           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,097           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,097           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,097           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,098                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,098                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,098                 directory, all directories are treated like packages.
2023-10-04T20:35:46,098           ********************************************************************************

2023-10-04T20:35:46,098   !!
2023-10-04T20:35:46,098     check.warn(importable)
2023-10-04T20:35:46,098   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-04T20:35:46,099   !!

2023-10-04T20:35:46,099           ********************************************************************************
2023-10-04T20:35:46,099           ############################
2023-10-04T20:35:46,099           # Package would be ignored #
2023-10-04T20:35:46,099           ############################
2023-10-04T20:35:46,099           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-04T20:35:46,099           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,100           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,100           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-04T20:35:46,100           to the `packages` configuration field.

2023-10-04T20:35:46,100           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,100           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,101           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,101           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,101           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,101           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-04T20:35:46,101           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-04T20:35:46,102           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,102           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,102           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,102           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,102           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,103           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,103                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,103                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,103                 directory, all directories are treated like packages.
2023-10-04T20:35:46,103           ********************************************************************************

2023-10-04T20:35:46,103   !!
2023-10-04T20:35:46,104     check.warn(importable)
2023-10-04T20:35:46,104   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-04T20:35:46,104   !!

2023-10-04T20:35:46,104           ********************************************************************************
2023-10-04T20:35:46,104           ############################
2023-10-04T20:35:46,104           # Package would be ignored #
2023-10-04T20:35:46,104           ############################
2023-10-04T20:35:46,105           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-04T20:35:46,105           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,105           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,105           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-04T20:35:46,105           to the `packages` configuration field.

2023-10-04T20:35:46,105           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,106           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,106           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,106           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,106           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,106           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-04T20:35:46,107           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-04T20:35:46,107           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,107           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,107           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,107           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,107           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,108           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,108                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,108                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,108                 directory, all directories are treated like packages.
2023-10-04T20:35:46,108           ********************************************************************************

2023-10-04T20:35:46,108   !!
2023-10-04T20:35:46,109     check.warn(importable)
2023-10-04T20:35:46,109   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-04T20:35:46,109   !!

2023-10-04T20:35:46,109           ********************************************************************************
2023-10-04T20:35:46,109           ############################
2023-10-04T20:35:46,109           # Package would be ignored #
2023-10-04T20:35:46,109           ############################
2023-10-04T20:35:46,110           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-04T20:35:46,110           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,110           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,110           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-04T20:35:46,110           to the `packages` configuration field.

2023-10-04T20:35:46,110           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,111           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,111           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,111           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,111           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,111           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-04T20:35:46,112           already explicitly excluding 'moleculekit.tmalign' via
2023-10-04T20:35:46,112           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,112           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,112           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,112           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,112           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,113           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,113                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,113                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,113                 directory, all directories are treated like packages.
2023-10-04T20:35:46,113           ********************************************************************************

2023-10-04T20:35:46,114   !!
2023-10-04T20:35:46,114     check.warn(importable)
2023-10-04T20:35:46,114   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-04T20:35:46,114   !!

2023-10-04T20:35:46,114           ********************************************************************************
2023-10-04T20:35:46,114           ############################
2023-10-04T20:35:46,114           # Package would be ignored #
2023-10-04T20:35:46,115           ############################
2023-10-04T20:35:46,115           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-04T20:35:46,115           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,115           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,115           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-04T20:35:46,115           to the `packages` configuration field.

2023-10-04T20:35:46,116           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,116           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,116           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,116           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,116           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,117           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-04T20:35:46,117           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-04T20:35:46,117           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,117           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,117           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,118           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,118           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,118           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,118                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,118                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,119                 directory, all directories are treated like packages.
2023-10-04T20:35:46,119           ********************************************************************************

2023-10-04T20:35:46,119   !!
2023-10-04T20:35:46,119     check.warn(importable)
2023-10-04T20:35:46,119   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-04T20:35:46,119   !!

2023-10-04T20:35:46,120           ********************************************************************************
2023-10-04T20:35:46,120           ############################
2023-10-04T20:35:46,120           # Package would be ignored #
2023-10-04T20:35:46,121           ############################
2023-10-04T20:35:46,121           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-04T20:35:46,121           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,121           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,121           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-04T20:35:46,122           to the `packages` configuration field.

2023-10-04T20:35:46,122           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,122           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,122           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,122           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,123           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,123           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-04T20:35:46,123           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-04T20:35:46,123           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,123           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,124           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,124           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,124           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,126           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,126                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,126                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,126                 directory, all directories are treated like packages.
2023-10-04T20:35:46,126           ********************************************************************************

2023-10-04T20:35:46,127   !!
2023-10-04T20:35:46,127     check.warn(importable)
2023-10-04T20:35:46,127   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-04T20:35:46,127   !!

2023-10-04T20:35:46,127           ********************************************************************************
2023-10-04T20:35:46,127           ############################
2023-10-04T20:35:46,128           # Package would be ignored #
2023-10-04T20:35:46,128           ############################
2023-10-04T20:35:46,128           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-04T20:35:46,128           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,128           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,128           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-04T20:35:46,129           to the `packages` configuration field.

2023-10-04T20:35:46,129           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,129           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,129           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,130           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,131           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,131           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-04T20:35:46,132           already explicitly excluding 'moleculekit.wrapping' via
2023-10-04T20:35:46,132           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,132           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,133           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,134           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,134           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,135           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,135                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,135                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,135                 directory, all directories are treated like packages.
2023-10-04T20:35:46,135           ********************************************************************************

2023-10-04T20:35:46,135   !!
2023-10-04T20:35:46,136     check.warn(importable)
2023-10-04T20:35:46,136   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-04T20:35:46,136   !!

2023-10-04T20:35:46,137           ********************************************************************************
2023-10-04T20:35:46,137           ############################
2023-10-04T20:35:46,137           # Package would be ignored #
2023-10-04T20:35:46,137           ############################
2023-10-04T20:35:46,137           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-04T20:35:46,137           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,138           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,138           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-04T20:35:46,138           to the `packages` configuration field.

2023-10-04T20:35:46,138           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,138           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,138           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,139           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,139           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,139           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-04T20:35:46,139           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-04T20:35:46,139           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,139           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,140           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,140           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,140           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,141           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,141                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,141                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,141                 directory, all directories are treated like packages.
2023-10-04T20:35:46,141           ********************************************************************************

2023-10-04T20:35:46,141   !!
2023-10-04T20:35:46,141     check.warn(importable)
2023-10-04T20:35:46,142   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-04T20:35:46,142   !!

2023-10-04T20:35:46,142           ********************************************************************************
2023-10-04T20:35:46,142           ############################
2023-10-04T20:35:46,142           # Package would be ignored #
2023-10-04T20:35:46,142           ############################
2023-10-04T20:35:46,142           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-04T20:35:46,142           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,143           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,143           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-04T20:35:46,143           to the `packages` configuration field.

2023-10-04T20:35:46,143           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,143           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,143           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,144           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,144           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,144           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-04T20:35:46,144           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-04T20:35:46,144           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,145           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,145           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,145           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,145           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,146           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,146                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,146                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,146                 directory, all directories are treated like packages.
2023-10-04T20:35:46,146           ********************************************************************************

2023-10-04T20:35:46,146   !!
2023-10-04T20:35:46,147     check.warn(importable)
2023-10-04T20:35:46,147   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-04T20:35:46,147   !!

2023-10-04T20:35:46,147           ********************************************************************************
2023-10-04T20:35:46,147           ############################
2023-10-04T20:35:46,147           # Package would be ignored #
2023-10-04T20:35:46,147           ############################
2023-10-04T20:35:46,148           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-04T20:35:46,148           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:35:46,148           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:35:46,148           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-04T20:35:46,148           to the `packages` configuration field.

2023-10-04T20:35:46,148           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:35:46,149           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:35:46,149           instead of `find_packages(...)`/`find:`).

2023-10-04T20:35:46,149           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:35:46,149           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:35:46,149           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-04T20:35:46,150           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-04T20:35:46,150           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:35:46,150           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:35:46,150           combination with a more fine grained `package-data` configuration.

2023-10-04T20:35:46,150           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:35:46,151           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:35:46,151           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:35:46,151                 even if it does not contain any `.py` files.
2023-10-04T20:35:46,151                 On the other hand, currently there is no concept of package data
2023-10-04T20:35:46,151                 directory, all directories are treated like packages.
2023-10-04T20:35:46,151           ********************************************************************************

2023-10-04T20:35:46,152   !!
2023-10-04T20:35:46,152     check.warn(importable)
2023-10-04T20:35:46,152   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:46,152   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:46,152   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:35:46,152   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:35:46,152   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:35:46,153   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:35:46,153   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:35:46,174   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:35:46,176   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:35:46,177   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:35:46,200   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:35:46,202   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:35:46,203   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:35:46,224   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:35:46,226   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:35:46,226   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:35:46,229   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:35:46,231   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:35:46,433   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T20:35:46,434   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T20:35:46,436   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-04T20:35:46,437   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,438   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,439   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,441   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,443   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,445   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,447   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,449   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,450   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,452   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,454   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,456   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,458   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,460   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,461   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,463   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,465   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,467   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,469   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,471   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,473   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,475   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,477   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,479   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,481   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,483   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,485   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,486   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,488   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,490   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,492   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,494   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,496   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,498   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,500   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,502   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,504   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,506   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,508   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,510   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,512   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,514   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,516   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,518   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,520   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,522   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,524   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,526   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,528   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,530   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,532   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,534   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,536   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,538   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,540   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,542   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,544   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,546   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,547   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,549   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,551   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,553   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,555   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,557   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,559   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,561   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,563   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,565   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,567   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,569   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,572   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,573   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,575   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,577   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,579   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,581   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,583   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,585   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,587   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,589   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,591   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,593   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,595   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,597   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,599   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,601   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,603   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,605   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,607   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,608   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,610   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,612   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,614   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,616   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,618   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,620   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,622   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,624   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,626   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,628   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,630   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,632   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,634   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,636   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,638   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,640   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,642   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,644   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,646   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,648   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,650   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,652   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,654   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,656   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,657   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,659   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,662   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,664   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,666   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,668   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,670   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,672   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,674   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,676   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,677   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,679   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,681   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,683   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,686   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,687   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,689   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,691   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,693   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,695   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,697   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,699   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,701   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,703   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,705   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,706   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,708   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,710   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,712   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,714   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,716   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,718   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,720   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,721   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,723   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,725   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,727   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,729   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,731   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,733   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,734   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,736   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,739   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,741   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,743   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,744   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,747   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,748   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,750   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,752   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,754   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,756   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,758   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,760   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,762   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,763   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,765   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,767   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,769   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,771   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,773   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,775   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:35:46,776   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:35:46,777   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:35:46,797   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:35:46,799   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:35:46,800   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T20:35:46,801   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T20:35:46,803   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:35:46,804   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:35:46,810   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:35:46,811   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:35:46,838   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:35:46,839   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:35:46,841   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:35:46,861   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:35:46,863   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:35:46,865   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:35:46,865   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:35:46,869   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:35:46,871   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:35:46,873   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:35:46,873   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:35:46,877   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:35:46,879   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:35:46,882   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:35:46,882   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:35:46,905   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:35:46,907   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:35:46,908   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:35:46,927   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:35:46,929   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:35:46,930   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:35:46,951   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:35:46,953   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:35:46,954   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:35:46,981   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:35:46,992   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T20:35:46,992   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.16'
2023-10-04T20:35:46,993   running build_ext
2023-10-04T20:35:47,003   building 'moleculekit.interactions.hbonds' extension
2023-10-04T20:35:47,004   creating build/temp.linux-armv7l-cpython-39
2023-10-04T20:35:47,004   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:35:47,005   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:35:47,006   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:35:47,007   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-04T20:35:47,264   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:35:47,265                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:35:47,265                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:35:47,265                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-04T20:35:47,265   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:35:47,265      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:35:47,265         |  ^~~~~~~
2023-10-04T20:36:13,397   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:36:13,713   building 'moleculekit.interactions.pipi' extension
2023-10-04T20:36:13,713   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:36:13,714   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-04T20:36:13,948   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:36:13,948                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:36:13,949                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:36:13,949                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-04T20:36:13,949   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:36:13,949      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:36:13,949         |  ^~~~~~~
2023-10-04T20:36:41,947   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:36:42,267   building 'moleculekit.interactions.cationpi' extension
2023-10-04T20:36:42,268   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:36:42,269   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-04T20:36:42,507   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:36:42,507                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:36:42,508                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:36:42,508                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-04T20:36:42,508   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:36:42,508      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:36:42,508         |  ^~~~~~~
2023-10-04T20:37:10,228   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:37:10,553   building 'moleculekit.interactions.sigmahole' extension
2023-10-04T20:37:10,554   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:37:10,554   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-04T20:37:10,795   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:37:10,795                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:37:10,796                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:37:10,796                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-04T20:37:10,796   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:37:10,796      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:37:10,796         |  ^~~~~~~
2023-10-04T20:37:38,219   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:37:38,536   building 'moleculekit.wrapping' extension
2023-10-04T20:37:38,537   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:37:38,537   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-04T20:37:38,774   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:37:38,774                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:37:38,774                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:37:38,774                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-04T20:37:38,774   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:37:38,775      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:37:38,775         |  ^~~~~~~
2023-10-04T20:38:02,561   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:38:02,775   building 'moleculekit.bondguesser_utils' extension
2023-10-04T20:38:02,776   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:38:02,776   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-04T20:38:03,013   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:38:03,013                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:38:03,013                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:38:03,013                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-04T20:38:03,014   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:38:03,014      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:38:03,014         |  ^~~~~~~
2023-10-04T20:38:04,563   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-04T20:38:04,564   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:38:04,564   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-04T20:38:04,564         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:38:04,564   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:38:04,564   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-04T20:38:04,564         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:38:04,565   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:38:04,565   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-04T20:38:04,565         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:38:04,565   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,565   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,565         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,565   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,566   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:38:04,566         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,566   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,566   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,566         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,566   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,566   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,567         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,567   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,567   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:38:04,567         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,567   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,567   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,567         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,568   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,568   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,568         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,568   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,568   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:38:04,568         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,568   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,569   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,569         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,569   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,569   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,569         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,569   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,569   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,570         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,570   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,570   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,570         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,570   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,570   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,570         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,571   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,571   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:38:04,571         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,571   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,571   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,571         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,572   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,572   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:38:04,572         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,572   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,572   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,572         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,572   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,573   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:38:04,573         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,573   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,573   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,573         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,573   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:38:04,573   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:38:04,573         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-04T20:38:04,592   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:38:04,593   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-04T20:38:04,593         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-04T20:38:04,593   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:38:04,593   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-04T20:38:04,593         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T20:38:27,636   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:38:27,936   building 'moleculekit.atomselect_utils' extension
2023-10-04T20:38:27,937   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:38:27,938   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-04T20:38:28,178   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:38:28,178                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:38:28,178                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:38:28,179                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-04T20:38:28,179   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:38:28,179      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:38:28,179         |  ^~~~~~~
2023-10-04T20:38:29,914   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-04T20:38:29,914   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:38:29,915   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-04T20:38:29,915         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T20:38:29,919   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T20:38:29,920   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:38:29,920   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T20:38:29,920         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:38:29,925   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T20:38:29,925   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:38:29,925   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T20:38:29,925         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:39:00,414   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:39:00,752   building 'moleculekit.distance_utils' extension
2023-10-04T20:39:00,753   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:39:00,754   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-04T20:39:01,453   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:39:01,453                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:39:01,453                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:39:01,453                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-04T20:39:01,453   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:39:01,453      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:39:01,454         |  ^~~~~~~
2023-10-04T20:39:33,634   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:39:33,973   building 'moleculekit.occupancy_utils' extension
2023-10-04T20:39:33,974   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:39:33,974   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-04T20:39:34,206   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:39:34,207                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:39:34,207                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:39:34,207                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-04T20:39:34,207   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:39:34,207      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:39:34,207         |  ^~~~~~~
2023-10-04T20:39:57,294   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:39:57,503   building 'moleculekit.xtc' extension
2023-10-04T20:39:57,504   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:39:57,504   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:39:57,505   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-04T20:39:57,748   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,748      66 |  "OK",
2023-10-04T20:39:57,749         |  ^~~~
2023-10-04T20:39:57,749   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,749      67 |  "Header",
2023-10-04T20:39:57,749         |  ^~~~~~~~
2023-10-04T20:39:57,749   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,749      68 |  "String",
2023-10-04T20:39:57,749         |  ^~~~~~~~
2023-10-04T20:39:57,750   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,750      69 |  "Double",
2023-10-04T20:39:57,750         |  ^~~~~~~~
2023-10-04T20:39:57,750   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,750      70 |  "Integer",
2023-10-04T20:39:57,750         |  ^~~~~~~~~
2023-10-04T20:39:57,751   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,751      71 |  "Float",
2023-10-04T20:39:57,751         |  ^~~~~~~
2023-10-04T20:39:57,751   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,751      72 |  "Unsigned integer",
2023-10-04T20:39:57,751         |  ^~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,751   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,751      73 |  "Compressed 3D coordinate",
2023-10-04T20:39:57,752         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,752   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,752      74 |  "Closing file",
2023-10-04T20:39:57,752         |  ^~~~~~~~~~~~~~
2023-10-04T20:39:57,752   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,752      75 |  "Magic number",
2023-10-04T20:39:57,752         |  ^~~~~~~~~~~~~~
2023-10-04T20:39:57,753   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,753      76 |  "Not enough memory",
2023-10-04T20:39:57,753         |  ^~~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,753   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,753      77 |  "End of file",
2023-10-04T20:39:57,753         |  ^~~~~~~~~~~~~
2023-10-04T20:39:57,753   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:39:57,754      78 |  "File not found"
2023-10-04T20:39:57,754         |  ^~~~~~~~~~~~~~~~
2023-10-04T20:39:57,758   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-04T20:39:57,758   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,758     459 |     while (size >= num && num_of_bits < 32)
2023-10-04T20:39:57,758         |            ~~~~~^~~~~~
2023-10-04T20:39:57,759   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-04T20:39:57,759   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,759     505 |     while (bytes[num_of_bytes] >= num)
2023-10-04T20:39:57,759         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-04T20:39:57,761   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-04T20:39:57,761   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,762     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-04T20:39:57,762         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,762   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,762     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-04T20:39:57,762         |               ~~^~~~~~~~~~~~~~
2023-10-04T20:39:57,762   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,762     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-04T20:39:57,763         |               ~~^~~~~~~~~~~~~~~~
2023-10-04T20:39:57,763   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-04T20:39:57,763   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,763     664 |   if (lastbits < num_of_bits)
2023-10-04T20:39:57,763         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-04T20:39:57,767   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-04T20:39:57,767   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,768     785 |  if(size3>xfp->buf1size)
2023-10-04T20:39:57,768         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:39:57,769   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,770     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:39:57,770         |                   ^
2023-10-04T20:39:57,772   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,772     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,772         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,773   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,773     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,773         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,773   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,773     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,773         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,774   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,774     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,774         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,774   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,774     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,774         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,774   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,774     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:39:57,775         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:39:57,775   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,775     756 |  int smallidx,  minidx, maxidx;
2023-10-04T20:39:57,775         |                 ^~~~~~
2023-10-04T20:39:57,775   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,775     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T20:39:57,775         |                         ^~~~~~
2023-10-04T20:39:57,775   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T20:39:57,776     763 |  int errval=1;
2023-10-04T20:39:57,776         |      ^~~~~~
2023-10-04T20:39:57,776   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-04T20:39:57,777   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,777    1011 |  if(size3>xfp->buf1size)
2023-10-04T20:39:57,777         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:39:57,779   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,779    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:39:57,779         |                     ~~~~~~~~^~~~~~~
2023-10-04T20:39:57,779   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,779    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:39:57,780         |                    ~~~~~~~~^~~~~~~
2023-10-04T20:39:57,780   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,780    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:39:57,780         |                    ~~~~~~~~^~~~~~~
2023-10-04T20:39:57,781   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,782    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-04T20:39:57,782         |                  ^
2023-10-04T20:39:57,782   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,782    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:39:57,782         |                   ^
2023-10-04T20:39:57,786   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,786    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T20:39:57,786         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,786   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,786    1001 |  int errval;
2023-10-04T20:39:57,786         |      ^~~~~~
2023-10-04T20:39:57,789   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-04T20:39:57,789   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,789    1316 |  if(size3>xfp->buf1size)
2023-10-04T20:39:57,789         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:39:57,791   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,791    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:39:57,791         |                   ^
2023-10-04T20:39:57,794   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,794    1289 |  int smallidx,  maxidx, minidx;
2023-10-04T20:39:57,794         |                         ^~~~~~
2023-10-04T20:39:57,794   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,794    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T20:39:57,795         |                         ^~~~~~
2023-10-04T20:39:57,795   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T20:39:57,795    1297 |  int errval=1;
2023-10-04T20:39:57,795         |      ^~~~~~
2023-10-04T20:39:57,796   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-04T20:39:57,796   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,796    1513 |  if(size3>xfp->buf1size) {
2023-10-04T20:39:57,797         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:39:57,800   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,801    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-04T20:39:57,801         |                  ^
2023-10-04T20:39:57,801   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:39:57,801    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:39:57,801         |                   ^
2023-10-04T20:39:57,805   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:39:57,805    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T20:39:57,805         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:39:57,805   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:39:57,805    1504 |  int errval=1;
2023-10-04T20:39:57,805         |      ^~~~~~
2023-10-04T20:40:00,024   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-04T20:40:00,279   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-04T20:40:00,842   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-04T20:40:00,843   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T20:40:00,843     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-04T20:40:00,843         |      ^~~
2023-10-04T20:40:00,849   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-04T20:40:00,849   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T20:40:00,850     418 |  int nf3 = nframes * 3;
2023-10-04T20:40:00,850         |      ^~~
2023-10-04T20:40:00,854   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-04T20:40:00,854   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-04T20:40:00,854     491 |  int reading_index = 0;
2023-10-04T20:40:00,854         |      ^~~~~~~~~~~~~
2023-10-04T20:40:00,855   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-04T20:40:00,855     492 |  int writing_index = 0;
2023-10-04T20:40:00,855         |      ^~~~~~~~~~~~~
2023-10-04T20:40:01,612   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-04T20:40:01,847   In file included from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:40:01,847                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:40:01,847                    from /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:40:01,848                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-04T20:40:01,848   /tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:40:01,848      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:40:01,848         |  ^~~~~~~
2023-10-04T20:40:21,899   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:40:22,212   building 'moleculekit.tmalign' extension
2023-10-04T20:40:22,213   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:40:22,214   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:40:22,216   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-04T20:40:51,562   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-t615q2ak/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-04T20:41:10,000   In file included from /usr/include/c++/10/vector:72,
2023-10-04T20:41:10,000                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T20:41:10,000   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-04T20:41:10,000   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-04T20:41:10,001     426 |       vector<_Tp, _Alloc>::
2023-10-04T20:41:10,001         |       ^~~~~~~~~~~~~~~~~~~
2023-10-04T20:41:10,580   In file included from /usr/include/c++/10/vector:67,
2023-10-04T20:41:10,580                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T20:41:10,580   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-04T20:41:10,580   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:41:10,581    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:41:10,581         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:41:10,581   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:41:10,581    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:41:10,581         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:41:10,582   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:41:10,582    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:41:10,582         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:41:13,058   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:41:13,516   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T20:41:13,516   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.16'
2023-10-04T20:41:13,516   installing to build/bdist.linux-armv7l/wheel
2023-10-04T20:41:13,516   running install
2023-10-04T20:41:13,541   running install_lib
2023-10-04T20:41:13,547   creating build/bdist.linux-armv7l
2023-10-04T20:41:13,548   creating build/bdist.linux-armv7l/wheel
2023-10-04T20:41:13,550   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,553   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:41:13,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:41:13,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:41:13,582   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T20:41:13,584   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:41:13,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:41:13,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:41:13,589   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:41:13,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:41:13,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:41:13,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:41:13,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:41:13,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T20:41:13,598   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:41:13,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:41:13,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:41:13,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:41:13,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:41:13,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,614   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:41:13,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:41:13,618   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T20:41:13,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T20:41:13,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:41:13,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:41:13,642   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T20:41:13,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T20:41:13,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,699   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:41:13,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:41:13,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:41:13,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:41:13,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:41:13,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,713   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:41:13,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:41:13,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:41:13,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,745   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,746   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:41:13,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:41:13,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:41:13,771   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:41:13,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:41:13,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:41:13,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,853   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:41:13,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:41:13,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:41:13,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,907   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:41:13,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:41:13,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:41:13,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:41:13,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:13,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,006   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:41:14,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:41:14,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:41:14,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,037   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:41:14,071   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:41:14,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:41:14,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:41:14,099   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:41:14,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:41:14,103   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:41:14,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:41:14,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:41:14,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:41:14,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:41:14,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:41:14,140   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:41:14,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:41:14,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:41:14,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:41:14,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,175   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:41:14,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:41:14,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:41:14,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:41:14,185   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:41:14,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:41:14,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:41:14,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,259   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:41:14,294   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:41:14,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:41:14,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:41:14,300   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:41:14,302   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T20:41:14,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T20:41:14,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:41:14,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:41:14,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:41:14,513   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-04T20:41:14,517   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:41:14,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:41:14,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,847   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,860   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:41:14,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:41:14,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:41:14,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:41:14,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:41:14,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:41:14,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:41:14,905   running install_egg_info
2023-10-04T20:41:14,910   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.16-py3.9.egg-info
2023-10-04T20:41:14,923   running install_scripts
2023-10-04T20:41:14,971   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.16.dist-info/WHEEL
2023-10-04T20:41:14,974   creating '/tmp/pip-wheel-c7km1fmn/.tmp-8fyd0rbi/moleculekit-1.7.16-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-04T20:41:14,977   adding 'moleculekit/__init__.py'
2023-10-04T20:41:14,979   adding 'moleculekit/_version.py'
2023-10-04T20:41:14,981   adding 'moleculekit/align.py'
2023-10-04T20:41:15,296   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:15,308   adding 'moleculekit/bondguesser.py'
2023-10-04T20:41:15,548   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:15,557   adding 'moleculekit/config.py'
2023-10-04T20:41:15,559   adding 'moleculekit/dihedral.py'
2023-10-04T20:41:15,560   adding 'moleculekit/distance.py'
2023-10-04T20:41:15,870   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:15,881   adding 'moleculekit/home.py'
2023-10-04T20:41:15,883   adding 'moleculekit/logging.ini'
2023-10-04T20:41:15,897   adding 'moleculekit/molecule.py'
2023-10-04T20:41:16,122   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:16,131   adding 'moleculekit/opm.py'
2023-10-04T20:41:16,133   adding 'moleculekit/periodictable.py'
2023-10-04T20:41:16,135   adding 'moleculekit/pymolgraphics.py'
2023-10-04T20:41:16,137   adding 'moleculekit/rcsb.py'
2023-10-04T20:41:16,138   adding 'moleculekit/rdkitintegration.py'
2023-10-04T20:41:16,150   adding 'moleculekit/readers.py'
2023-10-04T20:41:16,753   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:16,778   adding 'moleculekit/util.py'
2023-10-04T20:41:16,779   adding 'moleculekit/version.py'
2023-10-04T20:41:16,781   adding 'moleculekit/viewer.py'
2023-10-04T20:41:16,783   adding 'moleculekit/vmd_wrapper'
2023-10-04T20:41:16,785   adding 'moleculekit/vmdgraphics.py'
2023-10-04T20:41:16,788   adding 'moleculekit/vmdviewer.py'
2023-10-04T20:41:17,025   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:17,037   adding 'moleculekit/writers.py'
2023-10-04T20:41:17,305   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:17,315   adding 'moleculekit/atomselect/__init__.py'
2023-10-04T20:41:17,316   adding 'moleculekit/atomselect/analyze.py'
2023-10-04T20:41:17,319   adding 'moleculekit/atomselect/atomselect.py'
2023-10-04T20:41:17,321   adding 'moleculekit/atomselect/languageparser.py'
2023-10-04T20:41:17,426   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-04T20:41:17,437   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-04T20:41:17,529   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-04T20:41:17,538   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-04T20:41:17,638   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-04T20:41:17,648   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-04T20:41:17,650   adding 'moleculekit/interactions/__init__.py'
2023-10-04T20:41:17,932   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:18,204   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:18,216   adding 'moleculekit/interactions/interactions.py'
2023-10-04T20:41:18,496   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:18,782   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:41:18,883   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-04T20:41:18,892   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-04T20:41:18,983   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-04T20:41:18,992   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-04T20:41:19,084   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-04T20:41:19,094   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-04T20:41:19,185   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-04T20:41:19,195   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-04T20:41:19,283   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-04T20:41:19,292   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-04T20:41:19,294   adding 'moleculekit/pdbx/__init__.py'
2023-10-04T20:41:19,297   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-04T20:41:19,301   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-04T20:41:19,303   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-04T20:41:19,305   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-04T20:41:19,307   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-04T20:41:19,309   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-04T20:41:19,311   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-04T20:41:19,313   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-04T20:41:19,315   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-04T20:41:19,317   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-04T20:41:19,319   adding 'moleculekit/ply/__init__.py'
2023-10-04T20:41:19,324   adding 'moleculekit/ply/lex.py'
2023-10-04T20:41:19,336   adding 'moleculekit/ply/yacc.py'
2023-10-04T20:41:19,339   adding 'moleculekit/projections/__init__.py'
2023-10-04T20:41:19,341   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-04T20:41:19,345   adding 'moleculekit/projections/metricdihedral.py'
2023-10-04T20:41:19,349   adding 'moleculekit/projections/metricdistance.py'
2023-10-04T20:41:19,351   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-04T20:41:19,354   adding 'moleculekit/projections/metricgyration.py'
2023-10-04T20:41:19,358   adding 'moleculekit/projections/metricplumed2.py'
2023-10-04T20:41:19,361   adding 'moleculekit/projections/metricrmsd.py'
2023-10-04T20:41:19,363   adding 'moleculekit/projections/metricsasa.py'
2023-10-04T20:41:19,366   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-04T20:41:19,368   adding 'moleculekit/projections/metricshell.py'
2023-10-04T20:41:19,370   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-04T20:41:19,372   adding 'moleculekit/projections/metrictmscore.py'
2023-10-04T20:41:19,374   adding 'moleculekit/projections/projection.py'
2023-10-04T20:41:19,376   adding 'moleculekit/projections/util.py'
2023-10-04T20:41:19,378   adding 'moleculekit/share/ALA.cif'
2023-10-04T20:41:19,380   adding 'moleculekit/share/backbone.cif'
2023-10-04T20:41:20,697   adding 'moleculekit/share/opm_sequences.json'
2023-10-04T20:41:20,782   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-04T20:41:20,787   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-04T20:41:20,788   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-04T20:41:20,790   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-04T20:41:20,791   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-04T20:41:20,793   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-04T20:41:20,794   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-04T20:41:20,796   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-04T20:41:20,797   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-04T20:41:20,799   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-04T20:41:20,801   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-04T20:41:20,802   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-04T20:41:20,804   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-04T20:41:20,805   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-04T20:41:20,807   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-04T20:41:20,808   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-04T20:41:20,810   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-04T20:41:20,811   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-04T20:41:20,813   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-04T20:41:20,814   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-04T20:41:20,816   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-04T20:41:20,817   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-04T20:41:20,819   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-04T20:41:20,821   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-04T20:41:20,822   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-04T20:41:20,824   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-04T20:41:20,825   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-04T20:41:20,827   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-04T20:41:20,828   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-04T20:41:20,830   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-04T20:41:20,831   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-04T20:41:20,833   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-04T20:41:20,834   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-04T20:41:20,836   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-04T20:41:20,837   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-04T20:41:20,839   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-04T20:41:20,840   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-04T20:41:20,842   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-04T20:41:20,843   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-04T20:41:20,845   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-04T20:41:20,846   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-04T20:41:20,848   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-04T20:41:20,849   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-04T20:41:20,851   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-04T20:41:20,852   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-04T20:41:20,854   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-04T20:41:20,855   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-04T20:41:20,857   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-04T20:41:20,859   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-04T20:41:20,860   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-04T20:41:20,862   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-04T20:41:20,863   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-04T20:41:20,865   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-04T20:41:20,866   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-04T20:41:20,868   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-04T20:41:20,869   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-04T20:41:20,871   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-04T20:41:20,872   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-04T20:41:20,874   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-04T20:41:20,875   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-04T20:41:20,877   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-04T20:41:20,878   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-04T20:41:20,880   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-04T20:41:20,881   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-04T20:41:20,883   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-04T20:41:20,884   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-04T20:41:20,886   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-04T20:41:20,887   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-04T20:41:20,889   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-04T20:41:20,890   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-04T20:41:20,892   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-04T20:41:20,893   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-04T20:41:20,895   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-04T20:41:20,896   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-04T20:41:20,898   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-04T20:41:20,899   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-04T20:41:20,901   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-04T20:41:20,902   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-04T20:41:20,904   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-04T20:41:20,905   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-04T20:41:20,907   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-04T20:41:20,908   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-04T20:41:20,910   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-04T20:41:20,911   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-04T20:41:20,912   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-04T20:41:20,914   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-04T20:41:20,915   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-04T20:41:20,916   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-04T20:41:20,917   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-04T20:41:20,918   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-04T20:41:20,920   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-04T20:41:20,921   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-04T20:41:20,922   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-04T20:41:20,923   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-04T20:41:20,925   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-04T20:41:20,926   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-04T20:41:20,927   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-04T20:41:20,928   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-04T20:41:20,929   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-04T20:41:20,931   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-04T20:41:20,932   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-04T20:41:20,933   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-04T20:41:20,934   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-04T20:41:20,936   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-04T20:41:20,937   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-04T20:41:20,939   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-04T20:41:20,940   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-04T20:41:20,941   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-04T20:41:20,942   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-04T20:41:20,944   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-04T20:41:20,945   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-04T20:41:20,946   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-04T20:41:20,947   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-04T20:41:20,948   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-04T20:41:20,950   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-04T20:41:20,951   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-04T20:41:20,952   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-04T20:41:20,953   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-04T20:41:20,955   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-04T20:41:20,956   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-04T20:41:20,957   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-04T20:41:20,958   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-04T20:41:20,959   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-04T20:41:20,961   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-04T20:41:20,962   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-04T20:41:20,965   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-04T20:41:20,966   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-04T20:41:20,967   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-04T20:41:20,969   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-04T20:41:20,970   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-04T20:41:20,971   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-04T20:41:20,972   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-04T20:41:20,974   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-04T20:41:20,975   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-04T20:41:20,976   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-04T20:41:20,977   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-04T20:41:20,979   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-04T20:41:20,980   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-04T20:41:20,981   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-04T20:41:20,982   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-04T20:41:20,983   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-04T20:41:20,985   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-04T20:41:20,986   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-04T20:41:20,987   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-04T20:41:20,988   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-04T20:41:20,989   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-04T20:41:20,991   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-04T20:41:20,992   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-04T20:41:20,993   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-04T20:41:20,994   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-04T20:41:20,996   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-04T20:41:20,997   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-04T20:41:20,998   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-04T20:41:20,999   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-04T20:41:21,001   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-04T20:41:21,002   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-04T20:41:21,003   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-04T20:41:21,005   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-04T20:41:21,006   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-04T20:41:21,007   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-04T20:41:21,008   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-04T20:41:21,010   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-04T20:41:21,011   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-04T20:41:21,012   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-04T20:41:21,013   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-04T20:41:21,015   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-04T20:41:21,016   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-04T20:41:21,017   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-04T20:41:21,018   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-04T20:41:21,020   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-04T20:41:21,021   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-04T20:41:21,022   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-04T20:41:21,023   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-04T20:41:21,025   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-04T20:41:21,026   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-04T20:41:21,027   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-04T20:41:21,029   adding 'moleculekit/smallmol/__init__.py'
2023-10-04T20:41:21,034   adding 'moleculekit/smallmol/smallmol.py'
2023-10-04T20:41:21,037   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-04T20:41:21,039   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-04T20:41:21,040   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-04T20:41:21,042   adding 'moleculekit/smallmol/util.py'
2023-10-04T20:41:21,044   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-04T20:41:21,046   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-04T20:41:21,048   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-04T20:41:21,049   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-04T20:41:21,139   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-04T20:41:21,147   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-04T20:41:21,149   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-04T20:41:21,151   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-04T20:41:21,168   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-04T20:41:21,171   adding 'moleculekit/tools/__init__.py'
2023-10-04T20:41:21,173   adding 'moleculekit/tools/atomtyper.py'
2023-10-04T20:41:21,176   adding 'moleculekit/tools/autosegment.py'
2023-10-04T20:41:21,178   adding 'moleculekit/tools/crystalpacking.py'
2023-10-04T20:41:21,180   adding 'moleculekit/tools/detect.py'
2023-10-04T20:41:21,182   adding 'moleculekit/tools/docking.py'
2023-10-04T20:41:21,184   adding 'moleculekit/tools/graphalignment.py'
2023-10-04T20:41:21,186   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-04T20:41:21,187   adding 'moleculekit/tools/moleculechecks.py'
2023-10-04T20:41:21,193   adding 'moleculekit/tools/preparation.py'
2023-10-04T20:41:21,196   adding 'moleculekit/tools/preparation_customres.py'
2023-10-04T20:41:21,198   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-04T20:41:21,201   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-04T20:41:21,203   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-04T20:41:21,204   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-04T20:41:21,292   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-04T20:41:21,301   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-04T20:41:21,390   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-04T20:41:21,398   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-04T20:41:21,399   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-04T20:41:21,403   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-04T20:41:21,404   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-04T20:41:21,405   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-04T20:41:21,412   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-04T20:41:21,414   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-04T20:41:21,416   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-04T20:41:21,418   adding 'moleculekit-1.7.16.dist-info/LICENSE'
2023-10-04T20:41:21,420   adding 'moleculekit-1.7.16.dist-info/METADATA'
2023-10-04T20:41:21,421   adding 'moleculekit-1.7.16.dist-info/WHEEL'
2023-10-04T20:41:21,422   adding 'moleculekit-1.7.16.dist-info/top_level.txt'
2023-10-04T20:41:21,427   adding 'moleculekit-1.7.16.dist-info/RECORD'
2023-10-04T20:41:21,580   removing build/bdist.linux-armv7l/wheel
2023-10-04T20:41:21,849   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-04T20:41:22,122   Created wheel for moleculekit: filename=moleculekit-1.7.16-cp39-cp39-linux_armv7l.whl size=12538466 sha256=af3b4423fb0b1e49584ea7dfcd6c9d7ceae8c131f7b8506822593452c1f054ed
2023-10-04T20:41:22,123   Stored in directory: /tmp/pip-ephem-wheel-cache-9nnkkd98/wheels/ee/25/1c/07c8273cb6606f41f60e45a3b5c7cfb1baf885c0fc17915f24
2023-10-04T20:41:22,149 Successfully built moleculekit
2023-10-04T20:41:22,459 Removed build tracker: '/tmp/pip-build-tracker-jrprzl4l'