2023-10-04T20:42:41,597 Created temporary directory: /tmp/pip-build-tracker-m9mierf6
2023-10-04T20:42:41,598 Initialized build tracking at /tmp/pip-build-tracker-m9mierf6
2023-10-04T20:42:41,599 Created build tracker: /tmp/pip-build-tracker-m9mierf6
2023-10-04T20:42:41,599 Entered build tracker: /tmp/pip-build-tracker-m9mierf6
2023-10-04T20:42:41,599 Created temporary directory: /tmp/pip-wheel-98fof7ec
2023-10-04T20:42:41,604 Created temporary directory: /tmp/pip-ephem-wheel-cache-qfa_ntx9
2023-10-04T20:42:41,627 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T20:42:41,631 2 location(s) to search for versions of moleculekit:
2023-10-04T20:42:41,631 * https://pypi.org/simple/moleculekit/
2023-10-04T20:42:41,631 * https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:42:41,632 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-04T20:42:41,632 Getting page https://pypi.org/simple/moleculekit/
2023-10-04T20:42:41,634 Found index url https://pypi.org/simple/
2023-10-04T20:42:41,687 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-04T20:42:41,726   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,726   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-04T20:42:41,726   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,727   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-04T20:42:41,727   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,727   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-04T20:42:41,728   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,728   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-04T20:42:41,728   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,728   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-04T20:42:41,728   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,729   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-04T20:42:41,729   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,729   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-04T20:42:41,729   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,730   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-04T20:42:41,730   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,730   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-04T20:42:41,730   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,731   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-04T20:42:41,731   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,731   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-04T20:42:41,731   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,732   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-04T20:42:41,732   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,732   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-04T20:42:41,732   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,733   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-04T20:42:41,733   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,733   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-04T20:42:41,733   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,734   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-04T20:42:41,734   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,734   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-04T20:42:41,734   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,734   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-04T20:42:41,735   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,735   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-04T20:42:41,735   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,735   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-04T20:42:41,736   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,736   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-04T20:42:41,736   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,736   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-04T20:42:41,737   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,737   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-04T20:42:41,737   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,737   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-04T20:42:41,738   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,738   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-04T20:42:41,738   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,738   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-04T20:42:41,739   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,739   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-04T20:42:41,739   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,739   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-04T20:42:41,739   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,740   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-04T20:42:41,740   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,740   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-04T20:42:41,740   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,741   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-04T20:42:41,741   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,741   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-04T20:42:41,741   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-04T20:42:41,742   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-10-04T20:42:41,742   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-04T20:42:41,746   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
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2023-10-04T20:42:41,748   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
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2023-10-04T20:42:41,764   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
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2023-10-04T20:42:41,766   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-10-04T20:42:41,766   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-10-04T20:42:41,766   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
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2023-10-04T20:42:41,770   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-10-04T20:42:41,777   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-10-04T20:42:41,784   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-04T20:42:41,784   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-04T20:42:41,785   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-04T20:42:41,786   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-04T20:42:41,786   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-04T20:42:41,787   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-04T20:42:41,787   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-04T20:42:41,788   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-04T20:42:41,788   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-04T20:42:41,789   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-04T20:42:41,789   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-04T20:42:41,790   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-04T20:42:41,790   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-04T20:42:41,791   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-04T20:42:41,792   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-04T20:42:41,792 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:42:41,792 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:42:41,793 Found index url https://www.piwheels.org/simple/
2023-10-04T20:42:41,872 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-04T20:42:41,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,961   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,961   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,961   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,961   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,961   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,962   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,963   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,963   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,963   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,963   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,963   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,964   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,964   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,964   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,964   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,964   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,965   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,966   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,966   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,966   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,966   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,966   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,967   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,967   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,967   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,967   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,967   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,968   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,969   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,973   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,974   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,974   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,975   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,975   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,975   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,975   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,976   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,976   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,976   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,976   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,976   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,977   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,978   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,978   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,978   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,978   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,978   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,979   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,979   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,979   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,979   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,979   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,980   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,980   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-04T20:42:41,980   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-04T20:42:41,986 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-04T20:42:41,986 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-04T20:42:42,027 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-04T20:42:42,043 Collecting moleculekit==1.7.17
2023-10-04T20:42:42,045   Created temporary directory: /tmp/pip-unpack-4j5m34ym
2023-10-04T20:42:42,189   Downloading moleculekit-1.7.17.tar.gz (6.2 MB)
2023-10-04T20:42:44,491   Added moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz to build tracker '/tmp/pip-build-tracker-m9mierf6'
2023-10-04T20:42:44,499   Created temporary directory: /tmp/pip-build-env-946x972p
2023-10-04T20:42:44,509   Installing build dependencies: started
2023-10-04T20:42:44,510   Running command pip subprocess to install build dependencies
2023-10-04T20:42:45,909   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-04T20:42:46,437   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-04T20:42:48,008   Collecting setuptools
2023-10-04T20:42:48,110     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-04T20:42:49,474   Collecting numpy>=1.18.5
2023-10-04T20:42:50,867     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-04T20:42:53,076   Collecting Cython>=0.29.21
2023-10-04T20:42:53,810     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-04T20:42:54,170   Collecting toml
2023-10-04T20:42:54,185     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-04T20:42:54,286   Collecting versioneer[toml]==0.28
2023-10-04T20:42:54,303     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-04T20:42:54,435   Collecting tomli (from versioneer[toml]==0.28)
2023-10-04T20:42:54,452     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-04T20:42:56,254   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-04T20:42:56,289     Creating /tmp/pip-build-env-946x972p/overlay/bin
2023-10-04T20:42:56,291     changing mode of /tmp/pip-build-env-946x972p/overlay/bin/versioneer to 755
2023-10-04T20:43:05,926     changing mode of /tmp/pip-build-env-946x972p/overlay/bin/f2py to 755
2023-10-04T20:43:09,609     changing mode of /tmp/pip-build-env-946x972p/overlay/bin/cygdb to 755
2023-10-04T20:43:09,611     changing mode of /tmp/pip-build-env-946x972p/overlay/bin/cython to 755
2023-10-04T20:43:09,613     changing mode of /tmp/pip-build-env-946x972p/overlay/bin/cythonize to 755
2023-10-04T20:43:09,639   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-04T20:43:09,639   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-04T20:43:09,640   Successfully installed Cython-3.0.2 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-04T20:43:10,244   Installing build dependencies: finished with status 'done'
2023-10-04T20:43:10,249   Getting requirements to build wheel: started
2023-10-04T20:43:10,250   Running command Getting requirements to build wheel
2023-10-04T20:43:48,949   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,950   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,950   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,950   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-04T20:43:48,951   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-04T20:43:48,952   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-04T20:43:48,952   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-04T20:43:48,952   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-04T20:43:48,952   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-04T20:43:48,952   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-04T20:43:48,952   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-04T20:43:48,952   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-04T20:43:48,952   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-04T20:43:48,953   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-04T20:43:48,953   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-04T20:43:48,953   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-04T20:43:49,233   running egg_info
2023-10-04T20:43:49,239   writing moleculekit.egg-info/PKG-INFO
2023-10-04T20:43:49,243   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T20:43:49,245   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T20:43:49,247   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T20:43:49,270   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,271   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,271   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,271   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,271   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,271   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,272   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,273   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,273   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:49,273   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-04T20:43:50,537   Installing backend dependencies: started
2023-10-04T20:43:50,538   Running command pip subprocess to install backend dependencies
2023-10-04T20:43:51,779   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
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2023-10-04T20:43:52,693   Collecting wheel
2023-10-04T20:43:52,711     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
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2023-10-04T20:43:54,713   Created temporary directory: /tmp/pip-modern-metadata-za8n0w3j
2023-10-04T20:43:54,716   Preparing metadata (pyproject.toml): started
2023-10-04T20:43:54,717   Running command Preparing metadata (pyproject.toml)
2023-10-04T20:43:57,100   running dist_info
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2023-10-04T20:43:57,148   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:57,148   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:57,149   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:57,149   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:43:57,155   reading manifest file '/tmp/pip-modern-metadata-za8n0w3j/moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:43:57,157   reading manifest template 'MANIFEST.in'
2023-10-04T20:43:57,383   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T20:43:57,384   no previously-included directories found matching 'moleculekit/tests'
2023-10-04T20:43:57,384   no previously-included directories found matching 'package'
2023-10-04T20:43:57,385   adding license file 'LICENSE'
2023-10-04T20:43:57,397   writing manifest file '/tmp/pip-modern-metadata-za8n0w3j/moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:43:57,405   creating '/tmp/pip-modern-metadata-za8n0w3j/moleculekit-1.7.17.dist-info'
2023-10-04T20:43:57,600   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-04T20:43:57,606   Source in /tmp/pip-wheel-98fof7ec/moleculekit_0ab0e9fd72d84e0abce2dcd31f3a3124 has version 1.7.17, which satisfies requirement moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz
2023-10-04T20:43:57,607   Removed moleculekit==1.7.17 from https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz from build tracker '/tmp/pip-build-tracker-m9mierf6'
2023-10-04T20:43:57,613 Created temporary directory: /tmp/pip-unpack-yk63diha
2023-10-04T20:43:57,614 Created temporary directory: /tmp/pip-unpack-j53137r3
2023-10-04T20:43:57,622 Building wheels for collected packages: moleculekit
2023-10-04T20:43:57,626   Created temporary directory: /tmp/pip-wheel-5ppc9zd0
2023-10-04T20:43:57,626   Destination directory: /tmp/pip-wheel-5ppc9zd0
2023-10-04T20:43:57,628   Building wheel for moleculekit (pyproject.toml): started
2023-10-04T20:43:57,629   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-04T20:43:59,859   running bdist_wheel
2023-10-04T20:43:59,876   running build
2023-10-04T20:43:59,876   running build_py
2023-10-04T20:43:59,884   creating build
2023-10-04T20:43:59,884   creating build/lib.linux-armv7l-cpython-39
2023-10-04T20:43:59,885   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,886   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,888   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,890   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,892   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,894   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,896   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,897   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,899   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,902   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,904   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,906   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,908   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,910   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,912   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,914   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,916   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,920   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,922   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,924   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,925   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,927   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:43:59,931   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T20:43:59,932   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-04T20:43:59,934   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:43:59,935   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:43:59,938   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:43:59,939   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:43:59,941   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-04T20:43:59,944   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:43:59,945   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:43:59,947   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:43:59,950   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,951   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,954   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,956   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,958   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,960   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,963   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,965   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,967   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,970   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,972   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,973   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,975   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,977   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,980   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,982   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-04T20:43:59,985   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:43:59,985   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:43:59,988   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:43:59,990   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-04T20:43:59,995   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:43:59,996   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:43:59,998   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,001   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,003   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,005   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,007   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,010   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,012   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,013   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,016   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,018   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,020   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,023   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-04T20:44:00,026   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,027   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,029   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,032   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,034   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,037   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,039   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-04T20:44:00,042   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:44:00,043   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:44:00,045   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-04T20:44:00,047   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:44:00,048   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:44:00,050   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:44:00,052   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:44:00,054   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-04T20:44:00,056   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:44:00,057   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:44:00,060   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:44:00,062   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:44:00,064   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-04T20:44:00,067   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:44:00,068   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:44:00,071   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-04T20:44:00,073   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:44:00,074   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:44:00,076   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:44:00,079   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:44:00,081   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-04T20:44:00,083   running egg_info
2023-10-04T20:44:00,089   writing moleculekit.egg-info/PKG-INFO
2023-10-04T20:44:00,092   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-04T20:44:00,093   writing requirements to moleculekit.egg-info/requires.txt
2023-10-04T20:44:00,095   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-04T20:44:00,108   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,108   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,108   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,108   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,109   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,110   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,111   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,112   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,113   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,114   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,115   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,116   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,116   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,116   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,116   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,116   dependency /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-04T20:44:00,123   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:44:00,133   reading manifest template 'MANIFEST.in'
2023-10-04T20:44:00,352   no previously-included directories found matching 'moleculekit/test-data'
2023-10-04T20:44:00,353   no previously-included directories found matching 'moleculekit/tests'
2023-10-04T20:44:00,354   no previously-included directories found matching 'package'
2023-10-04T20:44:00,354   adding license file 'LICENSE'
2023-10-04T20:44:00,371   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-04T20:44:00,405   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-04T20:44:00,405   !!

2023-10-04T20:44:00,405           ********************************************************************************
2023-10-04T20:44:00,405           ############################
2023-10-04T20:44:00,406           # Package would be ignored #
2023-10-04T20:44:00,406           ############################
2023-10-04T20:44:00,406           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-04T20:44:00,406           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,406           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,406           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-04T20:44:00,406           to the `packages` configuration field.

2023-10-04T20:44:00,407           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,407           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,407           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,407           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,407           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,408           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-04T20:44:00,408           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-04T20:44:00,408           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,408           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,408           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,408           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,409           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,409           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,409                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,409                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,409                 directory, all directories are treated like packages.
2023-10-04T20:44:00,409           ********************************************************************************

2023-10-04T20:44:00,410   !!
2023-10-04T20:44:00,410     check.warn(importable)
2023-10-04T20:44:00,410   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-04T20:44:00,410   !!

2023-10-04T20:44:00,410           ********************************************************************************
2023-10-04T20:44:00,411           ############################
2023-10-04T20:44:00,411           # Package would be ignored #
2023-10-04T20:44:00,411           ############################
2023-10-04T20:44:00,411           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-04T20:44:00,411           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,411           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,411           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-04T20:44:00,411           to the `packages` configuration field.

2023-10-04T20:44:00,412           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,412           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,412           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,412           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,412           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,413           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-04T20:44:00,413           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-04T20:44:00,413           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,413           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,413           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,413           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,413           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,414           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,414                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,414                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,414                 directory, all directories are treated like packages.
2023-10-04T20:44:00,414           ********************************************************************************

2023-10-04T20:44:00,414   !!
2023-10-04T20:44:00,415     check.warn(importable)
2023-10-04T20:44:00,415   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-04T20:44:00,415   !!

2023-10-04T20:44:00,415           ********************************************************************************
2023-10-04T20:44:00,415           ############################
2023-10-04T20:44:00,415           # Package would be ignored #
2023-10-04T20:44:00,415           ############################
2023-10-04T20:44:00,416           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-04T20:44:00,416           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,416           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,416           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-04T20:44:00,416           to the `packages` configuration field.

2023-10-04T20:44:00,416           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,416           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,417           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,417           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,417           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,417           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-04T20:44:00,417           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-04T20:44:00,417           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,418           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,418           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,418           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,418           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,418           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,419                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,419                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,419                 directory, all directories are treated like packages.
2023-10-04T20:44:00,419           ********************************************************************************

2023-10-04T20:44:00,419   !!
2023-10-04T20:44:00,419     check.warn(importable)
2023-10-04T20:44:00,419   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-04T20:44:00,419   !!

2023-10-04T20:44:00,420           ********************************************************************************
2023-10-04T20:44:00,420           ############################
2023-10-04T20:44:00,420           # Package would be ignored #
2023-10-04T20:44:00,420           ############################
2023-10-04T20:44:00,420           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-04T20:44:00,420           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,421           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,421           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-04T20:44:00,421           to the `packages` configuration field.

2023-10-04T20:44:00,421           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,421           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,421           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,422           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,422           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,422           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-04T20:44:00,422           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-04T20:44:00,422           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,422           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,422           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,423           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,423           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,423           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,423                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,423                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,424                 directory, all directories are treated like packages.
2023-10-04T20:44:00,424           ********************************************************************************

2023-10-04T20:44:00,424   !!
2023-10-04T20:44:00,424     check.warn(importable)
2023-10-04T20:44:00,424   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-04T20:44:00,424   !!

2023-10-04T20:44:00,424           ********************************************************************************
2023-10-04T20:44:00,425           ############################
2023-10-04T20:44:00,425           # Package would be ignored #
2023-10-04T20:44:00,425           ############################
2023-10-04T20:44:00,425           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-04T20:44:00,425           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,425           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,425           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-04T20:44:00,425           to the `packages` configuration field.

2023-10-04T20:44:00,426           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,426           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,426           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,426           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,426           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,427           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-04T20:44:00,427           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-04T20:44:00,427           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,427           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,427           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,427           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,427           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,428           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,428                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,428                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,428                 directory, all directories are treated like packages.
2023-10-04T20:44:00,428           ********************************************************************************

2023-10-04T20:44:00,429   !!
2023-10-04T20:44:00,429     check.warn(importable)
2023-10-04T20:44:00,429   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-04T20:44:00,429   !!

2023-10-04T20:44:00,429           ********************************************************************************
2023-10-04T20:44:00,429           ############################
2023-10-04T20:44:00,429           # Package would be ignored #
2023-10-04T20:44:00,430           ############################
2023-10-04T20:44:00,430           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-04T20:44:00,430           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,430           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,430           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-04T20:44:00,430           to the `packages` configuration field.

2023-10-04T20:44:00,431           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,431           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,431           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,431           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,431           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,431           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-04T20:44:00,432           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-04T20:44:00,432           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,432           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,432           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,432           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,432           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,433           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,433                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,433                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,433                 directory, all directories are treated like packages.
2023-10-04T20:44:00,433           ********************************************************************************

2023-10-04T20:44:00,433   !!
2023-10-04T20:44:00,433     check.warn(importable)
2023-10-04T20:44:00,434   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-04T20:44:00,434   !!

2023-10-04T20:44:00,434           ********************************************************************************
2023-10-04T20:44:00,434           ############################
2023-10-04T20:44:00,434           # Package would be ignored #
2023-10-04T20:44:00,434           ############################
2023-10-04T20:44:00,434           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-04T20:44:00,434           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,435           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,435           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-04T20:44:00,435           to the `packages` configuration field.

2023-10-04T20:44:00,435           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,435           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,435           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,436           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,436           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,436           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-04T20:44:00,436           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-04T20:44:00,436           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,436           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,436           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,437           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,437           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,437           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,437                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,437                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,438                 directory, all directories are treated like packages.
2023-10-04T20:44:00,438           ********************************************************************************

2023-10-04T20:44:00,438   !!
2023-10-04T20:44:00,438     check.warn(importable)
2023-10-04T20:44:00,438   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-04T20:44:00,438   !!

2023-10-04T20:44:00,438           ********************************************************************************
2023-10-04T20:44:00,438           ############################
2023-10-04T20:44:00,439           # Package would be ignored #
2023-10-04T20:44:00,439           ############################
2023-10-04T20:44:00,439           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-04T20:44:00,439           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,439           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,439           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-04T20:44:00,439           to the `packages` configuration field.

2023-10-04T20:44:00,440           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,440           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,440           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,440           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,440           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,441           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-04T20:44:00,441           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-04T20:44:00,441           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,441           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,441           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,441           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,441           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,442           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,442                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,442                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,442                 directory, all directories are treated like packages.
2023-10-04T20:44:00,442           ********************************************************************************

2023-10-04T20:44:00,442   !!
2023-10-04T20:44:00,442     check.warn(importable)
2023-10-04T20:44:00,443   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-04T20:44:00,443   !!

2023-10-04T20:44:00,443           ********************************************************************************
2023-10-04T20:44:00,443           ############################
2023-10-04T20:44:00,443           # Package would be ignored #
2023-10-04T20:44:00,443           ############################
2023-10-04T20:44:00,443           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-04T20:44:00,443           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,444           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,444           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-04T20:44:00,444           to the `packages` configuration field.

2023-10-04T20:44:00,444           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,444           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,444           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,445           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,445           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,445           If you don't want 'moleculekit.share' to be distributed and are
2023-10-04T20:44:00,445           already explicitly excluding 'moleculekit.share' via
2023-10-04T20:44:00,445           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,445           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,445           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,446           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,446           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,446           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,446                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,447                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,447                 directory, all directories are treated like packages.
2023-10-04T20:44:00,447           ********************************************************************************

2023-10-04T20:44:00,447   !!
2023-10-04T20:44:00,448     check.warn(importable)
2023-10-04T20:44:00,448   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-04T20:44:00,448   !!

2023-10-04T20:44:00,449           ********************************************************************************
2023-10-04T20:44:00,449           ############################
2023-10-04T20:44:00,449           # Package would be ignored #
2023-10-04T20:44:00,449           ############################
2023-10-04T20:44:00,449           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-04T20:44:00,450           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,450           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,450           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-04T20:44:00,451           to the `packages` configuration field.

2023-10-04T20:44:00,451           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,451           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,451           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,452           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,452           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,452           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-04T20:44:00,453           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-04T20:44:00,453           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,453           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,453           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,453           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,453           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,454           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,454                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,454                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,454                 directory, all directories are treated like packages.
2023-10-04T20:44:00,454           ********************************************************************************

2023-10-04T20:44:00,454   !!
2023-10-04T20:44:00,455     check.warn(importable)
2023-10-04T20:44:00,455   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-04T20:44:00,455   !!

2023-10-04T20:44:00,455           ********************************************************************************
2023-10-04T20:44:00,455           ############################
2023-10-04T20:44:00,455           # Package would be ignored #
2023-10-04T20:44:00,455           ############################
2023-10-04T20:44:00,456           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-04T20:44:00,456           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,456           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,456           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-04T20:44:00,456           to the `packages` configuration field.

2023-10-04T20:44:00,456           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,456           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,457           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,457           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,457           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,457           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-04T20:44:00,457           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-04T20:44:00,458           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,458           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,458           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,458           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,460           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,469           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,472                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,472                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,472                 directory, all directories are treated like packages.
2023-10-04T20:44:00,472           ********************************************************************************

2023-10-04T20:44:00,472   !!
2023-10-04T20:44:00,473     check.warn(importable)
2023-10-04T20:44:00,473   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-04T20:44:00,473   !!

2023-10-04T20:44:00,473           ********************************************************************************
2023-10-04T20:44:00,473           ############################
2023-10-04T20:44:00,473           # Package would be ignored #
2023-10-04T20:44:00,473           ############################
2023-10-04T20:44:00,474           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-04T20:44:00,474           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,474           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,474           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-04T20:44:00,474           to the `packages` configuration field.

2023-10-04T20:44:00,474           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,475           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,475           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,475           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,475           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,475           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-04T20:44:00,476           already explicitly excluding 'moleculekit.tmalign' via
2023-10-04T20:44:00,476           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,476           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,476           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,476           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,476           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,477           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,477                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,477                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,477                 directory, all directories are treated like packages.
2023-10-04T20:44:00,477           ********************************************************************************

2023-10-04T20:44:00,478   !!
2023-10-04T20:44:00,478     check.warn(importable)
2023-10-04T20:44:00,478   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-04T20:44:00,478   !!

2023-10-04T20:44:00,478           ********************************************************************************
2023-10-04T20:44:00,478           ############################
2023-10-04T20:44:00,479           # Package would be ignored #
2023-10-04T20:44:00,479           ############################
2023-10-04T20:44:00,479           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-04T20:44:00,479           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,479           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,479           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-04T20:44:00,479           to the `packages` configuration field.

2023-10-04T20:44:00,480           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,480           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,480           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,480           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,481           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,481           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-04T20:44:00,481           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-04T20:44:00,481           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,481           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,481           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,482           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,482           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,482           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,482                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,482                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,483                 directory, all directories are treated like packages.
2023-10-04T20:44:00,483           ********************************************************************************

2023-10-04T20:44:00,483   !!
2023-10-04T20:44:00,483     check.warn(importable)
2023-10-04T20:44:00,483   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-04T20:44:00,483   !!

2023-10-04T20:44:00,483           ********************************************************************************
2023-10-04T20:44:00,484           ############################
2023-10-04T20:44:00,484           # Package would be ignored #
2023-10-04T20:44:00,484           ############################
2023-10-04T20:44:00,484           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-04T20:44:00,484           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,484           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,484           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-04T20:44:00,484           to the `packages` configuration field.

2023-10-04T20:44:00,485           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,485           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,485           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,485           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,486           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,486           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-04T20:44:00,486           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-04T20:44:00,486           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,486           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,487           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,487           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,487           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,488           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,488                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,488                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,489                 directory, all directories are treated like packages.
2023-10-04T20:44:00,489           ********************************************************************************

2023-10-04T20:44:00,489   !!
2023-10-04T20:44:00,489     check.warn(importable)
2023-10-04T20:44:00,490   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-04T20:44:00,490   !!

2023-10-04T20:44:00,490           ********************************************************************************
2023-10-04T20:44:00,490           ############################
2023-10-04T20:44:00,490           # Package would be ignored #
2023-10-04T20:44:00,491           ############################
2023-10-04T20:44:00,491           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-04T20:44:00,491           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,491           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,491           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-04T20:44:00,492           to the `packages` configuration field.

2023-10-04T20:44:00,492           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,492           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,492           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,493           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,493           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,493           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-04T20:44:00,493           already explicitly excluding 'moleculekit.wrapping' via
2023-10-04T20:44:00,494           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,494           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,495           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,499           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,499           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,500           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,500                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,501                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,501                 directory, all directories are treated like packages.
2023-10-04T20:44:00,501           ********************************************************************************

2023-10-04T20:44:00,501   !!
2023-10-04T20:44:00,501     check.warn(importable)
2023-10-04T20:44:00,501   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-04T20:44:00,502   !!

2023-10-04T20:44:00,502           ********************************************************************************
2023-10-04T20:44:00,502           ############################
2023-10-04T20:44:00,503           # Package would be ignored #
2023-10-04T20:44:00,503           ############################
2023-10-04T20:44:00,503           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-04T20:44:00,503           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,503           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,503           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-04T20:44:00,504           to the `packages` configuration field.

2023-10-04T20:44:00,504           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,504           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,504           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,504           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,505           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,505           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-04T20:44:00,505           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-04T20:44:00,505           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,505           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,506           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,506           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,506           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,506           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,507                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,507                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,507                 directory, all directories are treated like packages.
2023-10-04T20:44:00,507           ********************************************************************************

2023-10-04T20:44:00,507   !!
2023-10-04T20:44:00,507     check.warn(importable)
2023-10-04T20:44:00,507   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-04T20:44:00,507   !!

2023-10-04T20:44:00,508           ********************************************************************************
2023-10-04T20:44:00,508           ############################
2023-10-04T20:44:00,508           # Package would be ignored #
2023-10-04T20:44:00,508           ############################
2023-10-04T20:44:00,508           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-04T20:44:00,508           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,508           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,509           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-04T20:44:00,509           to the `packages` configuration field.

2023-10-04T20:44:00,509           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,509           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,509           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,509           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,510           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,510           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-04T20:44:00,510           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-04T20:44:00,510           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,510           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,511           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,512           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,513           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,514           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,515                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,515                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,515                 directory, all directories are treated like packages.
2023-10-04T20:44:00,515           ********************************************************************************

2023-10-04T20:44:00,515   !!
2023-10-04T20:44:00,515     check.warn(importable)
2023-10-04T20:44:00,516   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-04T20:44:00,516   !!

2023-10-04T20:44:00,516           ********************************************************************************
2023-10-04T20:44:00,516           ############################
2023-10-04T20:44:00,516           # Package would be ignored #
2023-10-04T20:44:00,517           ############################
2023-10-04T20:44:00,517           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-04T20:44:00,517           but it is absent from setuptools' `packages` configuration.

2023-10-04T20:44:00,517           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-04T20:44:00,517           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-04T20:44:00,517           to the `packages` configuration field.

2023-10-04T20:44:00,518           Alternatively, you can also rely on setuptools' discovery methods
2023-10-04T20:44:00,518           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-04T20:44:00,518           instead of `find_packages(...)`/`find:`).

2023-10-04T20:44:00,518           You can read more about "package discovery" on setuptools documentation page:

2023-10-04T20:44:00,518           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-04T20:44:00,519           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-04T20:44:00,519           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-04T20:44:00,519           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-04T20:44:00,519           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-04T20:44:00,519           combination with a more fine grained `package-data` configuration.

2023-10-04T20:44:00,520           You can read more about "package data files" on setuptools documentation page:

2023-10-04T20:44:00,520           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-04T20:44:00,520           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-04T20:44:00,520                 even if it does not contain any `.py` files.
2023-10-04T20:44:00,521                 On the other hand, currently there is no concept of package data
2023-10-04T20:44:00,521                 directory, all directories are treated like packages.
2023-10-04T20:44:00,521           ********************************************************************************

2023-10-04T20:44:00,521   !!
2023-10-04T20:44:00,521     check.warn(importable)
2023-10-04T20:44:00,521   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:44:00,521   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:44:00,522   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:44:00,522   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:44:00,522   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:44:00,522   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:44:00,522   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:44:00,522   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:44:00,522   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:44:00,523   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:44:00,532   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:44:00,534   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:44:00,535   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:44:00,562   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:44:00,564   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:44:00,565   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:44:00,568   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:44:00,569   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-04T20:44:00,768   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T20:44:00,769   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-04T20:44:00,771   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-04T20:44:00,771   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,772   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,774   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,776   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,778   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,780   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,782   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,783   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,785   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,787   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,789   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,791   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,793   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,795   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,797   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,799   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,801   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,803   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,805   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,807   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,809   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,811   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,813   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,815   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,818   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,819   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,821   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,823   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,825   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,827   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,829   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,832   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,834   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,836   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,838   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,839   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,842   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,843   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,845   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,847   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,849   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,851   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,853   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,855   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,857   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,859   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,861   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,863   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,865   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,867   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,869   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,871   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,873   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,875   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,877   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,879   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,881   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,882   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,884   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,886   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,888   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,890   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,892   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,894   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,896   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,898   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,901   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,902   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,904   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,906   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,908   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,910   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,912   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,914   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,916   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,917   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,919   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,921   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,923   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,925   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,927   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,929   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,930   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,932   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,935   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,937   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,938   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,941   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,942   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,944   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,946   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,948   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,950   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,952   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,954   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,956   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,958   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,960   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,962   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,963   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,965   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,967   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,969   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,971   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,973   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,975   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,977   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,978   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,981   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,982   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,984   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,986   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,988   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,990   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,992   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,994   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,997   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:00,998   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,001   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,003   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,005   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,006   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,008   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,010   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,012   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,014   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,016   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,018   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,020   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,022   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,024   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,026   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,027   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,029   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,031   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,033   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,035   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,037   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,039   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,040   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,042   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,044   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,046   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,048   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,050   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,052   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,053   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,055   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,057   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,059   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,061   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,062   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,064   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,066   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,068   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,070   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,072   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,074   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,076   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,078   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,080   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,082   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,083   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,085   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,087   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,089   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,091   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,093   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,095   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,096   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,098   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,100   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,102   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,104   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,106   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,108   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-04T20:44:01,110   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:44:01,110   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:44:01,130   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:44:01,132   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:44:01,134   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T20:44:01,135   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-04T20:44:01,137   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:44:01,137   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:44:01,143   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:44:01,144   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:44:01,163   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:44:01,165   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:44:01,166   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:44:01,187   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:44:01,189   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:44:01,191   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:44:01,192   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:44:01,195   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:44:01,197   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-04T20:44:01,199   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:44:01,200   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:44:01,203   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:44:01,205   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:44:01,208   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:44:01,208   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:44:01,231   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:44:01,233   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:44:01,234   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:44:01,254   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:44:01,256   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:44:01,257   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:44:01,279   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:44:01,282   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:44:01,283   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:44:01,307   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:44:01,324   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T20:44:01,324   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.17'
2023-10-04T20:44:01,324   running build_ext
2023-10-04T20:44:01,340   building 'moleculekit.interactions.hbonds' extension
2023-10-04T20:44:01,341   creating build/temp.linux-armv7l-cpython-39
2023-10-04T20:44:01,341   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-04T20:44:01,342   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-04T20:44:01,343   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-04T20:44:01,344   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-04T20:44:01,640   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:44:01,641                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:44:01,641                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:44:01,641                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-10-04T20:44:01,641   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:44:01,641      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:44:01,641         |  ^~~~~~~
2023-10-04T20:44:28,381   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:44:28,693   building 'moleculekit.interactions.pipi' extension
2023-10-04T20:44:28,694   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-04T20:44:28,695   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-04T20:44:29,151   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:44:29,151                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:44:29,152                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:44:29,152                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-10-04T20:44:29,152   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:44:29,152      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:44:29,152         |  ^~~~~~~
2023-10-04T20:44:57,252   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:44:57,572   building 'moleculekit.interactions.cationpi' extension
2023-10-04T20:44:57,573   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-04T20:44:57,574   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-04T20:44:57,825   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:44:57,825                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:44:57,825                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:44:57,825                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-10-04T20:44:57,826   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:44:57,826      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:44:57,826         |  ^~~~~~~
2023-10-04T20:45:25,614   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:45:25,937   building 'moleculekit.interactions.sigmahole' extension
2023-10-04T20:45:25,937   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-04T20:45:25,938   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-04T20:45:26,173   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:45:26,173                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:45:26,173                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:45:26,173                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-10-04T20:45:26,173   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:45:26,174      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:45:26,174         |  ^~~~~~~
2023-10-04T20:45:53,361   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:45:53,678   building 'moleculekit.wrapping' extension
2023-10-04T20:45:53,679   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-04T20:45:53,680   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-04T20:45:53,913   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:45:53,913                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:45:53,913                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:45:53,913                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-10-04T20:45:53,913   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:45:53,913      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:45:53,914         |  ^~~~~~~
2023-10-04T20:46:17,649   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:46:17,860   building 'moleculekit.bondguesser_utils' extension
2023-10-04T20:46:17,861   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-04T20:46:17,861   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-04T20:46:18,095   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:46:18,095                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:46:18,095                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:46:18,095                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-10-04T20:46:18,096   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:46:18,096      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:46:18,096         |  ^~~~~~~
2023-10-04T20:46:19,643   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-04T20:46:19,643   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:46:19,643   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-04T20:46:19,643         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:46:19,643   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:46:19,644   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-04T20:46:19,644         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:46:19,644   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-04T20:46:19,644   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-04T20:46:19,644         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-04T20:46:19,644   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,645   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,645         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,645   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,645   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:46:19,645         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,645   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,645   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,646         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,646   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,646   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,646         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,646   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,646   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:46:19,646         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,647   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,647   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,647         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,647   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,647   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,647         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,647   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,648   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:46:19,648         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,648   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,648   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,648         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,648   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,648   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,649         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,649   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,649   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,649         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,649   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,649   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,649         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,650   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,650   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,650         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,650   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,650   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:46:19,650         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,650   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,651   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,651         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,651   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,651   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-04T20:46:19,651         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,651   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,651   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,652         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,652   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,652   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-04T20:46:19,652         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,652   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,652   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,652         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,653   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-04T20:46:19,653   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-04T20:46:19,653         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,672   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-04T20:46:19,672   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:46:19,672   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-04T20:46:19,672         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-04T20:46:19,672   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:46:19,672   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-04T20:46:19,673         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T20:46:42,627   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:46:42,934   building 'moleculekit.atomselect_utils' extension
2023-10-04T20:46:42,935   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-04T20:46:42,936   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-04T20:46:43,178   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:46:43,178                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:46:43,178                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:46:43,178                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-10-04T20:46:43,178   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:46:43,178      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:46:43,178         |  ^~~~~~~
2023-10-04T20:46:44,926   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-04T20:46:44,927   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:46:44,927   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-04T20:46:44,927         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-04T20:46:44,932   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T20:46:44,932   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:46:44,932   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T20:46:44,932         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:46:44,937   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-04T20:46:44,937   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-04T20:46:44,937   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-04T20:46:44,938         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:47:15,285   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:47:15,613   building 'moleculekit.distance_utils' extension
2023-10-04T20:47:15,614   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-04T20:47:15,615   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-04T20:47:15,859   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:47:15,859                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:47:15,859                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:47:15,859                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-10-04T20:47:15,859   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:47:15,859      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:47:15,859         |  ^~~~~~~
2023-10-04T20:47:47,995   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:47:48,330   building 'moleculekit.occupancy_utils' extension
2023-10-04T20:47:48,331   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-04T20:47:48,332   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-04T20:47:48,570   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:47:48,571                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:47:48,571                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:47:48,571                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-10-04T20:47:48,571   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:47:48,571      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:47:48,571         |  ^~~~~~~
2023-10-04T20:48:11,449   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:48:11,658   building 'moleculekit.xtc' extension
2023-10-04T20:48:11,659   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-04T20:48:11,659   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-04T20:48:11,660   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-04T20:48:11,897   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,897      66 |  "OK",
2023-10-04T20:48:11,897         |  ^~~~
2023-10-04T20:48:11,897   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,898      67 |  "Header",
2023-10-04T20:48:11,898         |  ^~~~~~~~
2023-10-04T20:48:11,898   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,898      68 |  "String",
2023-10-04T20:48:11,898         |  ^~~~~~~~
2023-10-04T20:48:11,898   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,899      69 |  "Double",
2023-10-04T20:48:11,899         |  ^~~~~~~~
2023-10-04T20:48:11,899   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,899      70 |  "Integer",
2023-10-04T20:48:11,899         |  ^~~~~~~~~
2023-10-04T20:48:11,899   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,899      71 |  "Float",
2023-10-04T20:48:11,900         |  ^~~~~~~
2023-10-04T20:48:11,900   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,900      72 |  "Unsigned integer",
2023-10-04T20:48:11,900         |  ^~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,900   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,900      73 |  "Compressed 3D coordinate",
2023-10-04T20:48:11,900         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,901   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,901      74 |  "Closing file",
2023-10-04T20:48:11,901         |  ^~~~~~~~~~~~~~
2023-10-04T20:48:11,901   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,901      75 |  "Magic number",
2023-10-04T20:48:11,901         |  ^~~~~~~~~~~~~~
2023-10-04T20:48:11,901   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,902      76 |  "Not enough memory",
2023-10-04T20:48:11,902         |  ^~~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,902   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,902      77 |  "End of file",
2023-10-04T20:48:11,902         |  ^~~~~~~~~~~~~
2023-10-04T20:48:11,902   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-04T20:48:11,903      78 |  "File not found"
2023-10-04T20:48:11,903         |  ^~~~~~~~~~~~~~~~
2023-10-04T20:48:11,906   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-04T20:48:11,907   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,907     459 |     while (size >= num && num_of_bits < 32)
2023-10-04T20:48:11,907         |            ~~~~~^~~~~~
2023-10-04T20:48:11,907   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-04T20:48:11,907   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,908     505 |     while (bytes[num_of_bytes] >= num)
2023-10-04T20:48:11,908         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-04T20:48:11,910   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-04T20:48:11,910   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,910     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-04T20:48:11,910         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,910   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,911     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-04T20:48:11,911         |               ~~^~~~~~~~~~~~~~
2023-10-04T20:48:11,911   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,911     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-04T20:48:11,911         |               ~~^~~~~~~~~~~~~~~~
2023-10-04T20:48:11,911   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-04T20:48:11,911   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,912     664 |   if (lastbits < num_of_bits)
2023-10-04T20:48:11,912         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-04T20:48:11,915   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-04T20:48:11,915   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,915     785 |  if(size3>xfp->buf1size)
2023-10-04T20:48:11,915         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:48:11,917   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,917     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:48:11,917         |                   ^
2023-10-04T20:48:11,919   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,920     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,920         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,920   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,920     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,920         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,921   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,921     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,921         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,921   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,921     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,921         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,921   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,921     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,922         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,922   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,922     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-04T20:48:11,922         |        ~~~~~~~~~^~~~~~~~
2023-10-04T20:48:11,922   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,922     756 |  int smallidx,  minidx, maxidx;
2023-10-04T20:48:11,922         |                 ^~~~~~
2023-10-04T20:48:11,922   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,922     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T20:48:11,923         |                         ^~~~~~
2023-10-04T20:48:11,923   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T20:48:11,923     763 |  int errval=1;
2023-10-04T20:48:11,923         |      ^~~~~~
2023-10-04T20:48:11,924   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-04T20:48:11,924   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,924    1011 |  if(size3>xfp->buf1size)
2023-10-04T20:48:11,924         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:48:11,926   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,926    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:48:11,926         |                     ~~~~~~~~^~~~~~~
2023-10-04T20:48:11,927   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,927    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:48:11,927         |                    ~~~~~~~~^~~~~~~
2023-10-04T20:48:11,927   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,927    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-04T20:48:11,927         |                    ~~~~~~~~^~~~~~~
2023-10-04T20:48:11,929   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,929    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-04T20:48:11,929         |                  ^
2023-10-04T20:48:11,929   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,929    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:48:11,930         |                   ^
2023-10-04T20:48:11,933   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,933    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T20:48:11,933         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,934   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,934    1001 |  int errval;
2023-10-04T20:48:11,934         |      ^~~~~~
2023-10-04T20:48:11,936   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-04T20:48:11,936   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,937    1316 |  if(size3>xfp->buf1size)
2023-10-04T20:48:11,937         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:48:11,938   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,938    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:48:11,939         |                   ^
2023-10-04T20:48:11,941   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,941    1289 |  int smallidx,  maxidx, minidx;
2023-10-04T20:48:11,941         |                         ^~~~~~
2023-10-04T20:48:11,942   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,942    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-04T20:48:11,942         |                         ^~~~~~
2023-10-04T20:48:11,942   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-04T20:48:11,942    1297 |  int errval=1;
2023-10-04T20:48:11,942         |      ^~~~~~
2023-10-04T20:48:11,943   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-04T20:48:11,944   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,944    1513 |  if(size3>xfp->buf1size) {
2023-10-04T20:48:11,944         |     ~~~~~^~~~~~~~~~~~~~
2023-10-04T20:48:11,948   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,948    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-04T20:48:11,948         |                  ^
2023-10-04T20:48:11,948   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-04T20:48:11,948    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-04T20:48:11,949         |                   ^
2023-10-04T20:48:11,952   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-04T20:48:11,952    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-04T20:48:11,952         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-04T20:48:11,952   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-04T20:48:11,953    1504 |  int errval=1;
2023-10-04T20:48:11,953         |      ^~~~~~
2023-10-04T20:48:14,175   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-04T20:48:14,427   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-04T20:48:15,006   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-04T20:48:15,006   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T20:48:15,006     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-04T20:48:15,006         |      ^~~
2023-10-04T20:48:15,013   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-04T20:48:15,013   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-04T20:48:15,013     418 |  int nf3 = nframes * 3;
2023-10-04T20:48:15,014         |      ^~~
2023-10-04T20:48:15,019   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-04T20:48:15,019   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-04T20:48:15,019     491 |  int reading_index = 0;
2023-10-04T20:48:15,019         |      ^~~~~~~~~~~~~
2023-10-04T20:48:15,019   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-04T20:48:15,019     492 |  int writing_index = 0;
2023-10-04T20:48:15,020         |      ^~~~~~~~~~~~~
2023-10-04T20:48:15,779   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-04T20:48:16,014   In file included from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-04T20:48:16,014                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-04T20:48:16,014                    from /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-04T20:48:16,014                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-10-04T20:48:16,014   /tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-04T20:48:16,014      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-04T20:48:16,015         |  ^~~~~~~
2023-10-04T20:48:36,132   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:48:36,450   building 'moleculekit.tmalign' extension
2023-10-04T20:48:36,450   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-04T20:48:36,451   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-04T20:48:36,452   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-04T20:49:05,809   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-946x972p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-04T20:49:24,279   In file included from /usr/include/c++/10/vector:72,
2023-10-04T20:49:24,279                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T20:49:24,280   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-04T20:49:24,280   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-04T20:49:24,280     426 |       vector<_Tp, _Alloc>::
2023-10-04T20:49:24,280         |       ^~~~~~~~~~~~~~~~~~~
2023-10-04T20:49:24,858   In file included from /usr/include/c++/10/vector:67,
2023-10-04T20:49:24,858                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-10-04T20:49:24,858   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-04T20:49:24,859   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:49:24,859    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:49:24,859         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:49:24,859   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:49:24,859    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:49:24,859         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:49:24,860   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-04T20:49:24,860    1198 |    _M_realloc_insert(end(), __x);
2023-10-04T20:49:24,860         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-04T20:49:27,371   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-04T20:49:27,816   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-04T20:49:27,816   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.17'
2023-10-04T20:49:27,816   installing to build/bdist.linux-armv7l/wheel
2023-10-04T20:49:27,816   running install
2023-10-04T20:49:27,842   running install_lib
2023-10-04T20:49:27,848   creating build/bdist.linux-armv7l
2023-10-04T20:49:27,849   creating build/bdist.linux-armv7l/wheel
2023-10-04T20:49:27,851   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:27,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:27,855   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:49:27,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:49:27,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-04T20:49:27,879   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T20:49:27,880   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:49:27,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:49:27,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-04T20:49:27,885   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:49:27,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:49:27,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:49:27,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:49:27,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-04T20:49:27,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-04T20:49:27,896   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:49:27,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:49:27,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:49:27,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:49:27,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-04T20:49:27,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:27,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:27,911   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:49:27,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:49:27,914   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T20:49:27,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-04T20:49:27,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:49:27,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-04T20:49:27,944   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T20:49:27,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-04T20:49:27,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,019   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:49:28,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:49:28,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:49:28,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:49:28,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-04T20:49:28,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,033   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:49:28,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:49:28,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-04T20:49:28,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,067   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,069   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:49:28,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:49:28,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-04T20:49:28,092   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:49:28,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:49:28,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-04T20:49:28,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,161   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:49:28,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:49:28,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-04T20:49:28,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,217   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:49:28,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:49:28,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-04T20:49:28,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-04T20:49:28,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,338   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:49:28,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:49:28,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-04T20:49:28,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,372   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-04T20:49:28,408   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:49:28,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:49:28,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-04T20:49:28,432   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:49:28,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:49:28,435   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:49:28,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:49:28,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:49:28,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-04T20:49:28,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:49:28,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-04T20:49:28,468   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:49:28,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:49:28,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:49:28,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-04T20:49:28,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,506   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:49:28,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:49:28,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:49:28,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-04T20:49:28,516   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:49:28,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:49:28,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-04T20:49:28,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:28,588   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-04T20:49:28,619   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:49:28,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:49:28,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-04T20:49:28,624   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:49:28,626   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T20:49:28,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-04T20:49:28,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:49:28,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:49:28,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-04T20:49:28,842   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-04T20:49:28,846   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:28,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:28,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-04T20:49:29,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-04T20:49:29,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,196   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,212   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:49:29,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:49:29,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:49:29,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:49:29,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-04T20:49:29,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-04T20:49:29,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-04T20:49:29,265   running install_egg_info
2023-10-04T20:49:29,271   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.17-py3.9.egg-info
2023-10-04T20:49:29,284   running install_scripts
2023-10-04T20:49:29,333   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.17.dist-info/WHEEL
2023-10-04T20:49:29,336   creating '/tmp/pip-wheel-5ppc9zd0/.tmp-zl5jiyms/moleculekit-1.7.17-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-04T20:49:29,339   adding 'moleculekit/__init__.py'
2023-10-04T20:49:29,341   adding 'moleculekit/_version.py'
2023-10-04T20:49:29,343   adding 'moleculekit/align.py'
2023-10-04T20:49:29,660   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:29,672   adding 'moleculekit/bondguesser.py'
2023-10-04T20:49:29,913   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:29,922   adding 'moleculekit/config.py'
2023-10-04T20:49:29,924   adding 'moleculekit/dihedral.py'
2023-10-04T20:49:29,925   adding 'moleculekit/distance.py'
2023-10-04T20:49:30,232   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:30,243   adding 'moleculekit/home.py'
2023-10-04T20:49:30,245   adding 'moleculekit/logging.ini'
2023-10-04T20:49:30,259   adding 'moleculekit/molecule.py'
2023-10-04T20:49:30,483   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:30,492   adding 'moleculekit/opm.py'
2023-10-04T20:49:30,495   adding 'moleculekit/periodictable.py'
2023-10-04T20:49:30,497   adding 'moleculekit/pymolgraphics.py'
2023-10-04T20:49:30,498   adding 'moleculekit/rcsb.py'
2023-10-04T20:49:30,500   adding 'moleculekit/rdkitintegration.py'
2023-10-04T20:49:30,512   adding 'moleculekit/readers.py'
2023-10-04T20:49:31,118   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:31,143   adding 'moleculekit/util.py'
2023-10-04T20:49:31,144   adding 'moleculekit/version.py'
2023-10-04T20:49:31,146   adding 'moleculekit/viewer.py'
2023-10-04T20:49:31,148   adding 'moleculekit/vmd_wrapper'
2023-10-04T20:49:31,150   adding 'moleculekit/vmdgraphics.py'
2023-10-04T20:49:31,153   adding 'moleculekit/vmdviewer.py'
2023-10-04T20:49:31,385   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:31,398   adding 'moleculekit/writers.py'
2023-10-04T20:49:31,665   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:31,675   adding 'moleculekit/atomselect/__init__.py'
2023-10-04T20:49:31,677   adding 'moleculekit/atomselect/analyze.py'
2023-10-04T20:49:31,679   adding 'moleculekit/atomselect/atomselect.py'
2023-10-04T20:49:31,682   adding 'moleculekit/atomselect/languageparser.py'
2023-10-04T20:49:31,787   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-04T20:49:31,799   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-04T20:49:31,891   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-04T20:49:31,900   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-04T20:49:31,999   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-04T20:49:32,010   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-04T20:49:32,012   adding 'moleculekit/interactions/__init__.py'
2023-10-04T20:49:32,296   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:32,563   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:32,574   adding 'moleculekit/interactions/interactions.py'
2023-10-04T20:49:32,854   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:33,140   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-04T20:49:33,241   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-04T20:49:33,251   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-04T20:49:33,343   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-04T20:49:33,352   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-04T20:49:33,444   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-04T20:49:33,454   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-04T20:49:33,546   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-04T20:49:33,556   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-04T20:49:33,643   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-04T20:49:33,652   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-04T20:49:33,654   adding 'moleculekit/pdbx/__init__.py'
2023-10-04T20:49:33,658   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-04T20:49:33,661   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-04T20:49:33,664   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-04T20:49:33,666   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-04T20:49:33,668   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-04T20:49:33,670   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-04T20:49:33,672   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-04T20:49:33,674   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-04T20:49:33,676   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-04T20:49:33,677   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-04T20:49:33,679   adding 'moleculekit/ply/__init__.py'
2023-10-04T20:49:33,684   adding 'moleculekit/ply/lex.py'
2023-10-04T20:49:33,696   adding 'moleculekit/ply/yacc.py'
2023-10-04T20:49:33,699   adding 'moleculekit/projections/__init__.py'
2023-10-04T20:49:33,701   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-04T20:49:33,705   adding 'moleculekit/projections/metricdihedral.py'
2023-10-04T20:49:33,709   adding 'moleculekit/projections/metricdistance.py'
2023-10-04T20:49:33,712   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-04T20:49:33,714   adding 'moleculekit/projections/metricgyration.py'
2023-10-04T20:49:33,718   adding 'moleculekit/projections/metricplumed2.py'
2023-10-04T20:49:33,720   adding 'moleculekit/projections/metricrmsd.py'
2023-10-04T20:49:33,723   adding 'moleculekit/projections/metricsasa.py'
2023-10-04T20:49:33,725   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-04T20:49:33,727   adding 'moleculekit/projections/metricshell.py'
2023-10-04T20:49:33,729   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-04T20:49:33,731   adding 'moleculekit/projections/metrictmscore.py'
2023-10-04T20:49:33,732   adding 'moleculekit/projections/projection.py'
2023-10-04T20:49:33,734   adding 'moleculekit/projections/util.py'
2023-10-04T20:49:33,737   adding 'moleculekit/share/ALA.cif'
2023-10-04T20:49:33,738   adding 'moleculekit/share/backbone.cif'
2023-10-04T20:49:35,043   adding 'moleculekit/share/opm_sequences.json'
2023-10-04T20:49:35,129   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-04T20:49:35,134   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-04T20:49:35,136   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-04T20:49:35,137   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-04T20:49:35,139   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-04T20:49:35,141   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-04T20:49:35,142   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-04T20:49:35,144   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-04T20:49:35,145   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-04T20:49:35,147   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-04T20:49:35,148   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-04T20:49:35,150   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-04T20:49:35,151   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-04T20:49:35,153   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-04T20:49:35,155   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-04T20:49:35,156   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-04T20:49:35,158   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-04T20:49:35,159   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-04T20:49:35,161   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-04T20:49:35,163   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-04T20:49:35,164   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-04T20:49:35,166   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-04T20:49:35,167   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-04T20:49:35,169   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-04T20:49:35,171   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-04T20:49:35,172   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-04T20:49:35,174   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-04T20:49:35,175   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-04T20:49:35,177   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-04T20:49:35,178   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-04T20:49:35,180   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-04T20:49:35,182   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-04T20:49:35,183   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-04T20:49:35,185   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-04T20:49:35,186   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-04T20:49:35,188   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-04T20:49:35,189   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-04T20:49:35,191   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-04T20:49:35,193   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-04T20:49:35,195   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-04T20:49:35,196   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-04T20:49:35,198   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-04T20:49:35,200   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-04T20:49:35,201   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-04T20:49:35,202   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-04T20:49:35,204   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-04T20:49:35,205   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-04T20:49:35,206   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-04T20:49:35,208   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-04T20:49:35,209   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-04T20:49:35,210   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-04T20:49:35,212   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-04T20:49:35,213   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-04T20:49:35,214   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-04T20:49:35,216   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-04T20:49:35,217   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-04T20:49:35,218   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-04T20:49:35,219   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-04T20:49:35,221   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-04T20:49:35,222   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-04T20:49:35,223   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-04T20:49:35,225   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-04T20:49:35,226   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-04T20:49:35,227   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-04T20:49:35,228   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-04T20:49:35,230   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-04T20:49:35,231   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-04T20:49:35,232   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-04T20:49:35,233   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-04T20:49:35,235   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-04T20:49:35,236   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-04T20:49:35,237   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-04T20:49:35,238   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-04T20:49:35,240   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-04T20:49:35,241   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-04T20:49:35,242   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-04T20:49:35,243   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-04T20:49:35,245   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-04T20:49:35,246   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-04T20:49:35,247   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-04T20:49:35,248   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-04T20:49:35,249   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-04T20:49:35,251   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-04T20:49:35,252   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-04T20:49:35,253   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-04T20:49:35,255   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-04T20:49:35,256   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-04T20:49:35,257   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-04T20:49:35,258   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-04T20:49:35,259   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-04T20:49:35,261   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-04T20:49:35,262   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-04T20:49:35,263   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-04T20:49:35,265   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-04T20:49:35,266   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-04T20:49:35,267   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-04T20:49:35,268   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-04T20:49:35,270   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-04T20:49:35,271   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-04T20:49:35,272   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-04T20:49:35,273   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-04T20:49:35,275   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-04T20:49:35,276   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-04T20:49:35,277   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-04T20:49:35,278   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-04T20:49:35,280   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-04T20:49:35,281   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-04T20:49:35,282   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-04T20:49:35,284   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-04T20:49:35,285   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-04T20:49:35,286   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-04T20:49:35,287   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-04T20:49:35,289   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-04T20:49:35,290   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-04T20:49:35,291   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-04T20:49:35,292   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-04T20:49:35,294   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-04T20:49:35,295   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-04T20:49:35,296   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-04T20:49:35,297   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-04T20:49:35,299   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-04T20:49:35,300   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-04T20:49:35,301   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-04T20:49:35,302   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-04T20:49:35,304   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-04T20:49:35,307   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-04T20:49:35,308   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-04T20:49:35,309   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-04T20:49:35,311   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-04T20:49:35,312   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-04T20:49:35,313   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-04T20:49:35,315   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-04T20:49:35,316   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-04T20:49:35,317   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-04T20:49:35,318   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-04T20:49:35,320   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-04T20:49:35,321   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-04T20:49:35,322   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-04T20:49:35,323   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-04T20:49:35,325   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-04T20:49:35,326   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-04T20:49:35,327   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-04T20:49:35,328   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-04T20:49:35,329   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-04T20:49:35,331   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-04T20:49:35,332   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-04T20:49:35,333   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-04T20:49:35,334   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-04T20:49:35,335   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-04T20:49:35,337   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-04T20:49:35,338   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-04T20:49:35,339   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-04T20:49:35,340   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-04T20:49:35,342   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-04T20:49:35,343   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-04T20:49:35,344   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-04T20:49:35,346   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-04T20:49:35,347   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-04T20:49:35,348   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-04T20:49:35,349   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-04T20:49:35,351   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-04T20:49:35,352   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-04T20:49:35,353   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-04T20:49:35,354   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-04T20:49:35,356   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-04T20:49:35,357   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-04T20:49:35,358   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-04T20:49:35,359   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-04T20:49:35,361   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-04T20:49:35,362   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-04T20:49:35,363   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-04T20:49:35,365   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-04T20:49:35,366   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-04T20:49:35,367   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-04T20:49:35,368   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-04T20:49:35,370   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-04T20:49:35,372   adding 'moleculekit/smallmol/__init__.py'
2023-10-04T20:49:35,377   adding 'moleculekit/smallmol/smallmol.py'
2023-10-04T20:49:35,379   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-04T20:49:35,381   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-04T20:49:35,383   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-04T20:49:35,385   adding 'moleculekit/smallmol/util.py'
2023-10-04T20:49:35,387   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-04T20:49:35,389   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-04T20:49:35,390   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-04T20:49:35,392   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-04T20:49:35,482   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-04T20:49:35,491   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-04T20:49:35,492   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-04T20:49:35,494   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-04T20:49:35,512   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-04T20:49:35,515   adding 'moleculekit/tools/__init__.py'
2023-10-04T20:49:35,517   adding 'moleculekit/tools/atomtyper.py'
2023-10-04T20:49:35,519   adding 'moleculekit/tools/autosegment.py'
2023-10-04T20:49:35,522   adding 'moleculekit/tools/crystalpacking.py'
2023-10-04T20:49:35,525   adding 'moleculekit/tools/detect.py'
2023-10-04T20:49:35,527   adding 'moleculekit/tools/docking.py'
2023-10-04T20:49:35,529   adding 'moleculekit/tools/graphalignment.py'
2023-10-04T20:49:35,530   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-04T20:49:35,532   adding 'moleculekit/tools/moleculechecks.py'
2023-10-04T20:49:35,538   adding 'moleculekit/tools/preparation.py'
2023-10-04T20:49:35,541   adding 'moleculekit/tools/preparation_customres.py'
2023-10-04T20:49:35,543   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-04T20:49:35,546   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-04T20:49:35,548   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-04T20:49:35,549   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-04T20:49:35,638   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-04T20:49:35,646   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-04T20:49:35,736   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-04T20:49:35,745   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-04T20:49:35,746   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-04T20:49:35,749   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-04T20:49:35,751   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-04T20:49:35,752   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-04T20:49:35,759   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-04T20:49:35,761   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-04T20:49:35,763   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-04T20:49:35,766   adding 'moleculekit-1.7.17.dist-info/LICENSE'
2023-10-04T20:49:35,767   adding 'moleculekit-1.7.17.dist-info/METADATA'
2023-10-04T20:49:35,768   adding 'moleculekit-1.7.17.dist-info/WHEEL'
2023-10-04T20:49:35,769   adding 'moleculekit-1.7.17.dist-info/top_level.txt'
2023-10-04T20:49:35,774   adding 'moleculekit-1.7.17.dist-info/RECORD'
2023-10-04T20:49:35,920   removing build/bdist.linux-armv7l/wheel
2023-10-04T20:49:36,198   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-04T20:49:36,491   Created wheel for moleculekit: filename=moleculekit-1.7.17-cp39-cp39-linux_armv7l.whl size=12539839 sha256=885ac80555f3166751d89984b0b94dbb3c5fa2e22658ba0bf20b5582384dffb8
2023-10-04T20:49:36,492   Stored in directory: /tmp/pip-ephem-wheel-cache-qfa_ntx9/wheels/30/b2/f7/342716736219c3ff44e409cfce827a8f3a7876324a1e944915
2023-10-04T20:49:36,525 Successfully built moleculekit
2023-10-04T20:49:36,853 Removed build tracker: '/tmp/pip-build-tracker-m9mierf6'