2023-10-05T11:33:16,891 Created temporary directory: /tmp/pip-build-tracker-8bhqubhe 2023-10-05T11:33:16,892 Initialized build tracking at /tmp/pip-build-tracker-8bhqubhe 2023-10-05T11:33:16,893 Created build tracker: /tmp/pip-build-tracker-8bhqubhe 2023-10-05T11:33:16,893 Entered build tracker: /tmp/pip-build-tracker-8bhqubhe 2023-10-05T11:33:16,894 Created temporary directory: /tmp/pip-wheel-c8htry7_ 2023-10-05T11:33:16,897 Created temporary directory: /tmp/pip-ephem-wheel-cache-40pxfriz 2023-10-05T11:33:16,919 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T11:33:16,923 2 location(s) to search for versions of pysam: 2023-10-05T11:33:16,923 * https://pypi.org/simple/pysam/ 2023-10-05T11:33:16,923 * https://www.piwheels.org/simple/pysam/ 2023-10-05T11:33:16,924 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2023-10-05T11:33:16,925 Getting page https://pypi.org/simple/pysam/ 2023-10-05T11:33:16,926 Found index url https://pypi.org/simple/ 2023-10-05T11:33:17,086 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2023-10-05T11:33:17,131 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2023-10-05T11:33:17,132 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2023-10-05T11:33:17,133 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2023-10-05T11:33:17,134 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2023-10-05T11:33:17,134 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2023-10-05T11:33:17,135 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2023-10-05T11:33:17,136 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2023-10-05T11:33:17,137 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2023-10-05T11:33:17,137 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2023-10-05T11:33:17,138 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2023-10-05T11:33:17,139 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2023-10-05T11:33:17,140 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2023-10-05T11:33:17,140 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2023-10-05T11:33:17,141 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2023-10-05T11:33:17,142 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2023-10-05T11:33:17,143 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2023-10-05T11:33:17,144 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2023-10-05T11:33:17,144 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,145 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,145 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,146 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,146 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,147 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2023-10-05T11:33:17,148 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,148 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,149 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,150 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,150 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,151 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2023-10-05T11:33:17,152 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,152 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,153 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,154 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,154 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,155 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2023-10-05T11:33:17,156 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2023-10-05T11:33:17,156 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,157 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,157 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,158 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,158 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,159 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2023-10-05T11:33:17,160 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,161 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,161 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,162 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,162 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,163 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2023-10-05T11:33:17,164 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,165 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,165 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,165 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,166 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,166 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2023-10-05T11:33:17,167 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,168 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,168 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,169 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,169 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,170 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2023-10-05T11:33:17,171 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,171 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,172 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,173 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,174 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,174 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2023-10-05T11:33:17,175 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,175 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,176 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,176 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,177 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,177 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2023-10-05T11:33:17,178 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,179 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,180 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,180 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,181 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,181 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2023-10-05T11:33:17,182 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,183 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,183 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,184 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,184 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,185 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2023-10-05T11:33:17,185 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,186 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,187 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,187 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,188 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,189 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,189 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2023-10-05T11:33:17,190 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,190 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,191 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,192 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,193 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,193 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,194 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2023-10-05T11:33:17,194 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2023-10-05T11:33:17,195 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,195 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,196 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,196 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,197 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,197 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,198 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,199 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,199 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,200 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,201 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,201 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,202 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,202 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,203 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,203 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,204 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,204 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2023-10-05T11:33:17,205 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,205 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,206 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,207 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,207 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,208 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,209 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2023-10-05T11:33:17,209 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,210 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,211 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,212 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,212 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,212 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,213 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2023-10-05T11:33:17,214 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,214 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,215 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,215 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,216 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,217 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,217 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,218 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,219 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,219 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,220 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,221 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,221 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2023-10-05T11:33:17,222 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,222 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,223 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,223 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,224 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,224 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,225 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,226 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,226 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,227 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,227 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,228 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,229 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,230 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,230 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,230 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2023-10-05T11:33:17,231 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,232 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,232 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,232 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,233 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,234 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,234 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,235 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,235 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,236 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,237 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,237 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,238 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,238 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,239 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,239 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,240 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,240 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,241 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,242 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,242 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2023-10-05T11:33:17,243 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,244 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,244 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,245 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,245 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,246 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,247 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,247 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,248 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,248 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,249 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,249 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,250 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,250 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,251 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,252 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,252 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,253 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,253 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,254 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,255 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2023-10-05T11:33:17,256 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,256 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,257 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,257 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,258 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,258 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,259 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,259 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,260 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,261 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,261 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,262 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,262 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,263 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,264 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,264 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,265 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,265 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,266 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,266 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T11:33:17,267 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2023-10-05T11:33:17,267 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,268 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,269 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,269 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ba/d9a85addaaceb6e64e07498aa2f49c34851c72e1c367e91b43b47a6cdd91/pysam-0.21.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,270 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/b8/25f28c27f0f002172d02be5f8c7f65d13ee4535193da7690b32e84f04e53/pysam-0.21.0-cp311-cp311-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,270 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/44/a7/efdfb962af008eb2f0425885a230a7dc288de1bb2f09dde3d938a2ee540a/pysam-0.21.0-cp311-cp311-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,271 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/54/5d/147329f6731e3a04bc0b9be1561eaff5ae739451636e8215ab70dc2aaedf/pysam-0.21.0-cp311-cp311-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,271 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/b7/6e7629b3eb5758fe06a899847722c6f0b1836665e0b6f5420d5af2b855c5/pysam-0.21.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,272 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/03/fb071afcfc06d711f5526c4858ebeec0ee23d52f0a8bea3bed30d36e14d6/pysam-0.21.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,273 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/ce/9beb4abf34700b1af9a311970d644382b777218e98a791a60f504d6ec6f9/pysam-0.21.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,273 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/91/f53b59e9e273e2c906db2696b92eedc7d9e5f9d2d62134274b8316193f83/pysam-0.21.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,274 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/4e/cdbe48bd15a9183b89864f54b838f4b7a39f12fe9fe407140e05601e48ba/pysam-0.21.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,274 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c8/7b/4f2edd7020716f37a94bcb6e30eb2957fcfdfb1accd52856702a075dd7da/pysam-0.21.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,275 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a1/e0/767a3a55fdb539e931614f0bd74761c693c1475a8413dc9862ede27cec25/pysam-0.21.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,275 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3d/28/7ad11b60fce5d7fbd98f97996547f682d19dc0dcb287e7d0bfb26dab7364/pysam-0.21.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,276 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/87/d973a869f38c8d0c85e9ec2b588963974506971508bc343b0618708b6ec1/pysam-0.21.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,276 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/2a/c03e854221f6987f1c03b833dd469b662ea80e5bc63597d171167d64b8a4/pysam-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/0a/3d683e7f753d55d55cd1074afe6b5c631efabd10167f37b45ba4b1208d7d/pysam-0.21.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,277 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/4f/92accd8e20473087805de5ec2ade5f206ad2e1de78d32ee59abc04645d3c/pysam-0.21.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,278 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7d/55/709217f47472dfaedb0e3fa9462dfdcdbe809e1ed84cc0de54b5d11842dc/pysam-0.21.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,279 Found link https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.21.0 2023-10-05T11:33:17,280 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/70/41/34c85c7f2f3ec59c587ac8081b7e3f0e0ff320751c8bc659e6bc61bed6c6/pysam-0.22.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,280 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/b8/6862b8696a443120fcb3b2d78c37d95fbbd5e55600d0d550e904cd39c780/pysam-0.22.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,281 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/ff/6dfad2ef9a7b08787decbeb31edce2b0290b55a92dc453be0f65f6b8ae67/pysam-0.22.0-cp310-cp310-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,282 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2d/77/fe7b3a44975bc433c2ff42879b94a726ca1afdb9128ab4b4bce3b851f5d9/pysam-0.22.0-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,282 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/47/fd93e5818d457db0e148256a0636e37869c333c28c348741237a6f87e57a/pysam-0.22.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/65/1b/d134976a1d42184f947053c191327a86ec058ba5415ab38b9465a6f61aa9/pysam-0.22.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,283 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/2f/a5b7fff11b35fdcf6002fb7e2de1184bcab203569cc3b9a15e86e6f7000d/pysam-0.22.0-cp311-cp311-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,284 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/33/3d3892efab21256011bc7ee8d9911787583b93cd45a6d9a07b27c98f8df0/pysam-0.22.0-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,284 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/0d/986ec7927390da172a0c26dca6e4c91ffaadcef866072d71bbd96b7de02f/pysam-0.22.0-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,285 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/b6/2f32f6a81d675276214ad4a36171766d0b86d774a6b7c69eed06aa0ecc34/pysam-0.22.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,285 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/67/ee/3229aa0a950ddfc604c6ae0937389891c6d84de78c158a52dcb7ca00c1b2/pysam-0.22.0-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,286 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/82/ce/c590243561ecc170d87ce2c16a83f0eb6ac61e31040a836ebb880366b4b6/pysam-0.22.0-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/6b/a83f29bb5232ab0b09f7a5314a10a152f7c13129dfc92c7bf79404afb26d/pysam-0.22.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,287 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/f0/aced6e6a796e39fb37f70fbb4a4b902c7ec18c6f536dbdcc47568fb09783/pysam-0.22.0-cp36-cp36m-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,288 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/02/85/7bda79182e0f68089517d4bc2a6f93f22c9d854dfdb47417def172cac12e/pysam-0.22.0-cp36-cp36m-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,289 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/5a/0d9876b74b16b104a88dc55b6aaa3d6aecb58075c364e5ea9da57e5c7d00/pysam-0.22.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,289 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/21/87/5994707b8a5e04d6be638d0302e7306ecfe9bf838447f8ed4d6db9580309/pysam-0.22.0-cp37-cp37m-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,290 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/78/ccb7b75d0d92705b6e7d2df1f2173fd8701d6190b19fa21595643e18137f/pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,290 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/70/01/a07656353c6c03422109c3c167e394547bd5904ac510a78b3627d797d9fa/pysam-0.22.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e2/85/fa4fb58cc087522f4fde880517e4bc10bae9409798cdecc351aa72bc1fac/pysam-0.22.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,291 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/86/cdc1abc047690e6a180f73cf0d9d0e9ce950b9a66b0a97881355229d30aa/pysam-0.22.0-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/d1/a2d1cebe6c4f3acaf973d1fedcf7bf29209a4a4e8d5a9f2b9c5b20a2bcad/pysam-0.22.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,292 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/50/15e41d454069eda14edf16f6b91831108e1b1a4a4b61cc88564823d72501/pysam-0.22.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,293 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/b2/ba623e0d5af8bb99f3db382f29170dbc239d3a0bde0736ffd8a877bfb3b0/pysam-0.22.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/f6/03530dacb2879bf21d43efcabb1296c1bb28743fc9cfb9353f00277281b3/pysam-0.22.0-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,294 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/af/de/f7e57c109e4389e2b36c387588ff685c2379af750400d33d9ff60896c1b8/pysam-0.22.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,295 Found link https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.22.0 2023-10-05T11:33:17,296 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2023-10-05T11:33:17,297 Getting page https://www.piwheels.org/simple/pysam/ 2023-10-05T11:33:17,298 Found index url https://www.piwheels.org/simple/ 2023-10-05T11:33:17,463 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2023-10-05T11:33:17,502 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv7l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,503 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv6l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,504 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv7l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,504 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv6l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,505 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv7l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,505 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv6l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T11:33:17,506 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,506 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,507 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,507 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,508 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,509 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv6l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,510 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,510 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,511 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,511 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,512 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv7l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,513 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv6l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,513 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,514 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,515 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,515 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,516 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,516 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,517 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,517 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,518 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,519 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,519 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,520 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,521 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,521 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,522 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,523 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,523 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,524 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,524 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,525 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,525 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,526 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,527 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,527 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,528 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,529 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,529 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,530 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,530 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,531 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,532 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,534 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,534 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,535 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,535 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,538 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,539 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,539 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,540 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,541 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,541 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,542 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,542 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,543 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,543 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,544 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,544 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,545 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,545 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,546 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,547 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,547 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,548 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,549 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,549 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,550 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,550 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,551 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,551 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,552 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,552 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,553 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,554 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,555 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,555 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,556 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,557 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,558 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,558 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,558 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,559 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,559 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,560 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,560 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,561 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,561 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,562 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,563 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,564 Skipping link: No binaries permitted for pysam: 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2023-10-05T11:33:17,566 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,567 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,568 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,570 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,571 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,571 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,572 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,573 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,574 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,575 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,576 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,577 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,578 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,579 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,580 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,581 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,582 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,583 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,584 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,585 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,586 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,586 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,587 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,588 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,589 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,589 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,590 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,590 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,591 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,592 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,593 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,593 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,594 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,594 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,594 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,595 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,596 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T11:33:17,596 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2023-10-05T11:33:17,597 Skipping link: not a file: https://pypi.org/simple/pysam/ 2023-10-05T11:33:17,621 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2023-10-05T11:33:17,641 Collecting pysam==0.22.0 2023-10-05T11:33:17,644 Created temporary directory: /tmp/pip-unpack-4n1ovxps 2023-10-05T11:33:17,780 Downloading pysam-0.22.0.tar.gz (4.6 MB) 2023-10-05T11:33:20,224 Added pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz to build tracker '/tmp/pip-build-tracker-8bhqubhe' 2023-10-05T11:33:20,231 Created temporary directory: /tmp/pip-build-env-nxq60npo 2023-10-05T11:33:20,237 Installing build dependencies: started 2023-10-05T11:33:20,239 Running command pip subprocess to install build dependencies 2023-10-05T11:33:21,416 Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-05T11:33:21,932 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T11:33:23,483 Collecting setuptools>=59.0 2023-10-05T11:33:23,549 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-05T11:33:24,981 Collecting Cython<4,>=0.29.12 2023-10-05T11:33:25,835 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp311-cp311-linux_armv7l.whl (11.7 MB) 2023-10-05T11:33:28,837 Installing collected packages: setuptools, Cython 2023-10-05T11:33:34,668 Creating /tmp/pip-build-env-nxq60npo/overlay/local/bin 2023-10-05T11:33:34,671 changing mode of /tmp/pip-build-env-nxq60npo/overlay/local/bin/cygdb to 755 2023-10-05T11:33:34,673 changing mode of /tmp/pip-build-env-nxq60npo/overlay/local/bin/cython to 755 2023-10-05T11:33:34,675 changing mode of /tmp/pip-build-env-nxq60npo/overlay/local/bin/cythonize to 755 2023-10-05T11:33:34,698 Successfully installed Cython-3.0.2 setuptools-68.2.2 2023-10-05T11:33:35,263 Installing build dependencies: finished with status 'done' 2023-10-05T11:33:35,266 Getting requirements to build wheel: started 2023-10-05T11:33:35,268 Running command Getting requirements to build wheel 2023-10-05T11:33:35,764 # pysam: cython is available - using cythonize if necessary 2023-10-05T11:33:35,764 # pysam: htslib mode is shared 2023-10-05T11:33:35,765 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T11:33:35,765 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-10-05T11:33:35,766 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T11:33:35,766 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-10-05T11:33:36,066 checking for gcc... arm-linux-gnueabihf-gcc 2023-10-05T11:33:36,335 checking whether the C compiler works... yes 2023-10-05T11:33:36,336 checking for C compiler default output file name... a.out 2023-10-05T11:33:36,504 checking for suffix of executables... 2023-10-05T11:33:36,747 checking whether we are cross compiling... no 2023-10-05T11:33:36,834 checking for suffix of object files... o 2023-10-05T11:33:36,911 checking whether we are using the GNU C compiler... yes 2023-10-05T11:33:36,993 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-10-05T11:33:37,123 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-10-05T11:33:37,126 checking for ranlib... ranlib 2023-10-05T11:33:37,134 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T11:33:37,209 checking for C compiler warning flags... -Wall 2023-10-05T11:33:37,322 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-10-05T11:33:37,436 checking for egrep... /usr/bin/grep -E 2023-10-05T11:33:37,916 checking for ANSI C header files... yes 2023-10-05T11:33:38,037 checking for sys/types.h... yes 2023-10-05T11:33:38,200 checking for sys/stat.h... yes 2023-10-05T11:33:38,340 checking for stdlib.h... yes 2023-10-05T11:33:38,484 checking for string.h... yes 2023-10-05T11:33:38,628 checking for memory.h... yes 2023-10-05T11:33:38,773 checking for strings.h... yes 2023-10-05T11:33:38,922 checking for inttypes.h... yes 2023-10-05T11:33:39,109 checking for stdint.h... yes 2023-10-05T11:33:39,271 checking for unistd.h... yes 2023-10-05T11:33:39,464 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T11:33:39,644 checking C compiler flags needed for ssse3... none 2023-10-05T11:33:39,855 checking C compiler flags needed for popcnt... none 2023-10-05T11:33:40,032 checking C compiler flags needed for sse4.1... none 2023-10-05T11:33:40,207 checking C compiler flags needed for avx2... none 2023-10-05T11:33:40,383 checking C compiler flags needed for avx512f... none 2023-10-05T11:33:40,386 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T11:33:40,391 checking pkg-config is at least version 0.9.0... yes 2023-10-05T11:33:40,393 checking for special C compiler options needed for large files... no 2023-10-05T11:33:40,590 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T11:33:40,610 checking shared library type for unknown-Linux... plain .so 2023-10-05T11:33:40,758 checking whether the linker supports versioned symbols... no 2023-10-05T11:33:40,934 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T11:33:40,946 checking for stdlib.h... (cached) yes 2023-10-05T11:33:40,969 checking for unistd.h... (cached) yes 2023-10-05T11:33:41,139 checking for sys/param.h... yes 2023-10-05T11:33:41,339 checking for getpagesize... yes 2023-10-05T11:33:41,721 checking for working mmap... yes 2023-10-05T11:33:41,922 checking for gmtime_r... yes 2023-10-05T11:33:42,132 checking for fsync... yes 2023-10-05T11:33:42,380 checking for drand48... yes 2023-10-05T11:33:42,608 checking for srand48_deterministic... no 2023-10-05T11:33:42,773 checking whether fdatasync is declared... yes 2023-10-05T11:33:42,957 checking for fdatasync... yes 2023-10-05T11:33:43,407 checking for library containing log... -lm 2023-10-05T11:33:43,511 checking for zlib.h... yes 2023-10-05T11:33:43,697 checking for inflate in -lz... yes 2023-10-05T11:33:43,892 checking for library containing recv... none required 2023-10-05T11:33:43,983 checking for bzlib.h... yes 2023-10-05T11:33:44,171 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T11:33:44,377 checking for lzma.h... yes 2023-10-05T11:33:44,565 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T11:33:44,570 checking whether htscodecs files are present... yes 2023-10-05T11:33:44,680 checking for libdeflate.h... yes 2023-10-05T11:33:44,867 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T11:33:45,031 checking for curl/curl.h... yes 2023-10-05T11:33:45,440 checking for curl_easy_pause in -lcurl... yes 2023-10-05T11:33:45,702 checking for CCHmac... no 2023-10-05T11:33:46,305 checking for library containing HMAC... -lcrypto 2023-10-05T11:33:46,496 checking for library containing regcomp... none required 2023-10-05T11:33:46,563 configure: creating ./config.status 2023-10-05T11:33:46,864 config.status: creating config.mk 2023-10-05T11:33:46,905 config.status: creating htslib.pc.tmp 2023-10-05T11:33:46,951 config.status: creating config.h 2023-10-05T11:33:46,983 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T11:33:47,748 # pysam: htslib configure options: --enable-libcurl 2023-10-05T11:33:47,749 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T11:33:47,750 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T11:33:47,750 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T11:33:47,751 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T11:33:47,752 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T11:33:47,752 # pysam: htslib_config PLATFORM=default 2023-10-05T11:33:47,753 # pysam: config_option: ENABLE_GCS=1 2023-10-05T11:33:47,753 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T11:33:47,754 # pysam: config_option: ENABLE_S3=1 2023-10-05T11:33:47,754 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T11:33:47,755 # pysam: config_option: HAVE_HMAC=1 2023-10-05T11:33:47,756 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T11:33:47,756 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T11:33:47,757 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T11:33:47,757 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T11:33:47,758 # pysam: config_option: HAVE_MMAP=1 2023-10-05T11:33:47,759 running egg_info 2023-10-05T11:33:47,759 writing pysam.egg-info/PKG-INFO 2023-10-05T11:33:47,760 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-10-05T11:33:47,761 writing top-level names to pysam.egg-info/top_level.txt 2023-10-05T11:33:47,801 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T11:33:47,825 reading manifest template 'MANIFEST.in' 2023-10-05T11:33:47,826 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T11:33:47,827 warning: no files found matching 'THANKS' 2023-10-05T11:33:47,835 no previously-included directories found matching 'tests/' 2023-10-05T11:33:47,944 adding license file 'COPYING' 2023-10-05T11:33:47,945 adding license file 'AUTHORS' 2023-10-05T11:33:47,968 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T11:33:48,096 Getting requirements to build wheel: finished with status 'done' 2023-10-05T11:33:48,106 Installing backend dependencies: started 2023-10-05T11:33:48,107 Running command pip subprocess to install backend dependencies 2023-10-05T11:33:49,325 Using pip 23.2.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-05T11:33:49,861 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T11:33:50,381 Collecting wheel 2023-10-05T11:33:50,398 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-05T11:33:52,779 Installing collected packages: wheel 2023-10-05T11:33:53,010 Creating /tmp/pip-build-env-nxq60npo/normal/local/bin 2023-10-05T11:33:53,013 changing mode of /tmp/pip-build-env-nxq60npo/normal/local/bin/wheel to 755 2023-10-05T11:33:53,025 Successfully installed wheel-0.41.2 2023-10-05T11:33:53,482 Installing backend dependencies: finished with status 'done' 2023-10-05T11:33:53,484 Created temporary directory: /tmp/pip-modern-metadata-_5y_t6j2 2023-10-05T11:33:53,486 Preparing metadata (pyproject.toml): started 2023-10-05T11:33:53,487 Running command Preparing metadata (pyproject.toml) 2023-10-05T11:33:53,998 # pysam: cython is available - using cythonize if necessary 2023-10-05T11:33:53,999 # pysam: htslib mode is shared 2023-10-05T11:33:53,999 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T11:33:54,000 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-10-05T11:33:54,000 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T11:33:54,001 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-10-05T11:33:54,296 checking for gcc... arm-linux-gnueabihf-gcc 2023-10-05T11:33:54,579 checking whether the C compiler works... yes 2023-10-05T11:33:54,581 checking for C compiler default output file name... a.out 2023-10-05T11:33:54,752 checking for suffix of executables... 2023-10-05T11:33:54,956 checking whether we are cross compiling... no 2023-10-05T11:33:55,041 checking for suffix of object files... o 2023-10-05T11:33:55,119 checking whether we are using the GNU C compiler... yes 2023-10-05T11:33:55,194 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-10-05T11:33:55,336 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-10-05T11:33:55,340 checking for ranlib... ranlib 2023-10-05T11:33:55,353 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T11:33:55,469 checking for C compiler warning flags... -Wall 2023-10-05T11:33:55,628 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-10-05T11:33:55,765 checking for egrep... /usr/bin/grep -E 2023-10-05T11:33:56,242 checking for ANSI C header files... yes 2023-10-05T11:33:56,363 checking for sys/types.h... yes 2023-10-05T11:33:56,497 checking for sys/stat.h... yes 2023-10-05T11:33:56,631 checking for stdlib.h... yes 2023-10-05T11:33:56,774 checking for string.h... yes 2023-10-05T11:33:56,916 checking for memory.h... yes 2023-10-05T11:33:57,059 checking for strings.h... yes 2023-10-05T11:33:57,243 checking for inttypes.h... yes 2023-10-05T11:33:57,388 checking for stdint.h... yes 2023-10-05T11:33:57,548 checking for unistd.h... yes 2023-10-05T11:33:57,736 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T11:33:57,909 checking C compiler flags needed for ssse3... none 2023-10-05T11:33:58,117 checking C compiler flags needed for popcnt... none 2023-10-05T11:33:58,294 checking C compiler flags needed for sse4.1... none 2023-10-05T11:33:58,470 checking C compiler flags needed for avx2... none 2023-10-05T11:33:58,645 checking C compiler flags needed for avx512f... none 2023-10-05T11:33:58,648 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T11:33:58,653 checking pkg-config is at least version 0.9.0... yes 2023-10-05T11:33:58,655 checking for special C compiler options needed for large files... no 2023-10-05T11:33:58,871 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T11:33:58,885 checking shared library type for unknown-Linux... plain .so 2023-10-05T11:33:59,003 checking whether the linker supports versioned symbols... no 2023-10-05T11:33:59,180 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T11:33:59,191 checking for stdlib.h... (cached) yes 2023-10-05T11:33:59,214 checking for unistd.h... (cached) yes 2023-10-05T11:33:59,384 checking for sys/param.h... yes 2023-10-05T11:33:59,607 checking for getpagesize... yes 2023-10-05T11:33:59,959 checking for working mmap... yes 2023-10-05T11:34:00,156 checking for gmtime_r... yes 2023-10-05T11:34:00,367 checking for fsync... yes 2023-10-05T11:34:00,657 checking for drand48... yes 2023-10-05T11:34:00,890 checking for srand48_deterministic... no 2023-10-05T11:34:01,051 checking whether fdatasync is declared... yes 2023-10-05T11:34:01,236 checking for fdatasync... yes 2023-10-05T11:34:01,664 checking for library containing log... -lm 2023-10-05T11:34:01,766 checking for zlib.h... yes 2023-10-05T11:34:01,953 checking for inflate in -lz... yes 2023-10-05T11:34:02,140 checking for library containing recv... none required 2023-10-05T11:34:02,246 checking for bzlib.h... yes 2023-10-05T11:34:02,436 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T11:34:02,620 checking for lzma.h... yes 2023-10-05T11:34:02,807 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T11:34:02,812 checking whether htscodecs files are present... yes 2023-10-05T11:34:02,890 checking for libdeflate.h... yes 2023-10-05T11:34:03,110 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T11:34:03,253 checking for curl/curl.h... yes 2023-10-05T11:34:03,613 checking for curl_easy_pause in -lcurl... yes 2023-10-05T11:34:03,837 checking for CCHmac... no 2023-10-05T11:34:04,455 checking for library containing HMAC... -lcrypto 2023-10-05T11:34:04,644 checking for library containing regcomp... none required 2023-10-05T11:34:04,710 configure: creating ./config.status 2023-10-05T11:34:05,008 config.status: creating config.mk 2023-10-05T11:34:05,049 config.status: creating htslib.pc.tmp 2023-10-05T11:34:05,093 config.status: creating config.h 2023-10-05T11:34:05,113 config.status: config.h is unchanged 2023-10-05T11:34:05,119 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T11:34:05,815 # pysam: htslib configure options: --enable-libcurl 2023-10-05T11:34:05,816 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T11:34:05,817 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T11:34:05,817 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T11:34:05,818 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T11:34:05,819 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T11:34:05,819 # pysam: htslib_config PLATFORM=default 2023-10-05T11:34:05,820 # pysam: config_option: ENABLE_GCS=1 2023-10-05T11:34:05,820 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T11:34:05,821 # pysam: config_option: ENABLE_S3=1 2023-10-05T11:34:05,821 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T11:34:05,821 # pysam: config_option: HAVE_HMAC=1 2023-10-05T11:34:05,822 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T11:34:05,822 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T11:34:05,823 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T11:34:05,823 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T11:34:05,824 # pysam: config_option: HAVE_MMAP=1 2023-10-05T11:34:05,824 running dist_info 2023-10-05T11:34:05,825 creating /tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info 2023-10-05T11:34:05,828 writing /tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/PKG-INFO 2023-10-05T11:34:05,832 writing dependency_links to /tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/dependency_links.txt 2023-10-05T11:34:05,834 writing top-level names to /tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/top_level.txt 2023-10-05T11:34:05,835 writing manifest file '/tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/SOURCES.txt' 2023-10-05T11:34:05,902 reading manifest file '/tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/SOURCES.txt' 2023-10-05T11:34:05,905 reading manifest template 'MANIFEST.in' 2023-10-05T11:34:05,906 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T11:34:05,907 warning: no files found matching 'THANKS' 2023-10-05T11:34:05,916 no previously-included directories found matching 'tests/' 2023-10-05T11:34:06,035 adding license file 'COPYING' 2023-10-05T11:34:06,035 adding license file 'AUTHORS' 2023-10-05T11:34:06,053 writing manifest file '/tmp/pip-modern-metadata-_5y_t6j2/pysam.egg-info/SOURCES.txt' 2023-10-05T11:34:06,055 creating '/tmp/pip-modern-metadata-_5y_t6j2/pysam-0.22.0.dist-info' 2023-10-05T11:34:06,219 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-05T11:34:06,224 Source in /tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a has version 0.22.0, which satisfies requirement pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz 2023-10-05T11:34:06,225 Removed pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz from build tracker '/tmp/pip-build-tracker-8bhqubhe' 2023-10-05T11:34:06,231 Created temporary directory: /tmp/pip-unpack-91yexn9p 2023-10-05T11:34:06,232 Created temporary directory: /tmp/pip-unpack-i2ju5pi1 2023-10-05T11:34:06,235 Building wheels for collected packages: pysam 2023-10-05T11:34:06,240 Created temporary directory: /tmp/pip-wheel-2aaq2uva 2023-10-05T11:34:06,240 Destination directory: /tmp/pip-wheel-2aaq2uva 2023-10-05T11:34:06,243 Building wheel for pysam (pyproject.toml): started 2023-10-05T11:34:06,244 Running command Building wheel for pysam (pyproject.toml) 2023-10-05T11:34:06,740 # pysam: cython is available - using cythonize if necessary 2023-10-05T11:34:06,740 # pysam: htslib mode is shared 2023-10-05T11:34:06,741 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T11:34:06,742 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2023-10-05T11:34:06,743 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T11:34:06,744 # pysam: (sysconfig) LDFLAGS= -g -fwrapv -O2 2023-10-05T11:34:07,034 checking for gcc... arm-linux-gnueabihf-gcc 2023-10-05T11:34:07,289 checking whether the C compiler works... yes 2023-10-05T11:34:07,291 checking for C compiler default output file name... a.out 2023-10-05T11:34:07,458 checking for suffix of executables... 2023-10-05T11:34:07,694 checking whether we are cross compiling... no 2023-10-05T11:34:07,780 checking for suffix of object files... o 2023-10-05T11:34:07,859 checking whether we are using the GNU C compiler... yes 2023-10-05T11:34:07,935 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2023-10-05T11:34:08,067 checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed 2023-10-05T11:34:08,068 checking for ranlib... ranlib 2023-10-05T11:34:08,076 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T11:34:08,150 checking for C compiler warning flags... -Wall 2023-10-05T11:34:08,264 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E 2023-10-05T11:34:08,390 checking for egrep... /usr/bin/grep -E 2023-10-05T11:34:08,885 checking for ANSI C header files... yes 2023-10-05T11:34:09,005 checking for sys/types.h... yes 2023-10-05T11:34:09,144 checking for sys/stat.h... yes 2023-10-05T11:34:09,314 checking for stdlib.h... yes 2023-10-05T11:34:09,454 checking for string.h... yes 2023-10-05T11:34:09,597 checking for memory.h... yes 2023-10-05T11:34:09,740 checking for strings.h... yes 2023-10-05T11:34:09,886 checking for inttypes.h... yes 2023-10-05T11:34:10,057 checking for stdint.h... yes 2023-10-05T11:34:10,220 checking for unistd.h... yes 2023-10-05T11:34:10,409 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T11:34:10,583 checking C compiler flags needed for ssse3... none 2023-10-05T11:34:10,759 checking C compiler flags needed for popcnt... none 2023-10-05T11:34:10,970 checking C compiler flags needed for sse4.1... none 2023-10-05T11:34:11,150 checking C compiler flags needed for avx2... none 2023-10-05T11:34:11,325 checking C compiler flags needed for avx512f... none 2023-10-05T11:34:11,329 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T11:34:11,334 checking pkg-config is at least version 0.9.0... yes 2023-10-05T11:34:11,336 checking for special C compiler options needed for large files... no 2023-10-05T11:34:11,522 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T11:34:11,537 checking shared library type for unknown-Linux... plain .so 2023-10-05T11:34:11,679 checking whether the linker supports versioned symbols... no 2023-10-05T11:34:11,886 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T11:34:11,898 checking for stdlib.h... (cached) yes 2023-10-05T11:34:11,921 checking for unistd.h... (cached) yes 2023-10-05T11:34:12,089 checking for sys/param.h... yes 2023-10-05T11:34:12,292 checking for getpagesize... yes 2023-10-05T11:34:12,663 checking for working mmap... yes 2023-10-05T11:34:12,867 checking for gmtime_r... yes 2023-10-05T11:34:13,078 checking for fsync... yes 2023-10-05T11:34:13,290 checking for drand48... yes 2023-10-05T11:34:13,551 checking for srand48_deterministic... no 2023-10-05T11:34:13,715 checking whether fdatasync is declared... yes 2023-10-05T11:34:13,912 checking for fdatasync... yes 2023-10-05T11:34:14,352 checking for library containing log... -lm 2023-10-05T11:34:14,456 checking for zlib.h... yes 2023-10-05T11:34:14,643 checking for inflate in -lz... yes 2023-10-05T11:34:14,833 checking for library containing recv... none required 2023-10-05T11:34:14,921 checking for bzlib.h... yes 2023-10-05T11:34:15,138 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T11:34:15,331 checking for lzma.h... yes 2023-10-05T11:34:15,521 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T11:34:15,526 checking whether htscodecs files are present... yes 2023-10-05T11:34:15,605 checking for libdeflate.h... yes 2023-10-05T11:34:15,812 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T11:34:15,962 checking for curl/curl.h... yes 2023-10-05T11:34:16,330 checking for curl_easy_pause in -lcurl... yes 2023-10-05T11:34:16,548 checking for CCHmac... no 2023-10-05T11:34:17,177 checking for library containing HMAC... -lcrypto 2023-10-05T11:34:17,368 checking for library containing regcomp... none required 2023-10-05T11:34:17,433 configure: creating ./config.status 2023-10-05T11:34:17,728 config.status: creating config.mk 2023-10-05T11:34:17,769 config.status: creating htslib.pc.tmp 2023-10-05T11:34:17,814 config.status: creating config.h 2023-10-05T11:34:17,834 config.status: config.h is unchanged 2023-10-05T11:34:17,840 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T11:34:18,498 # pysam: htslib configure options: --enable-libcurl 2023-10-05T11:34:18,499 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T11:34:18,499 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T11:34:18,500 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T11:34:18,500 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T11:34:18,501 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T11:34:18,501 # pysam: htslib_config PLATFORM=default 2023-10-05T11:34:18,502 # pysam: config_option: ENABLE_GCS=1 2023-10-05T11:34:18,502 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T11:34:18,503 # pysam: config_option: ENABLE_S3=1 2023-10-05T11:34:18,504 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T11:34:18,504 # pysam: config_option: HAVE_HMAC=1 2023-10-05T11:34:18,505 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T11:34:18,505 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T11:34:18,506 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T11:34:18,506 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T11:34:18,507 # pysam: config_option: HAVE_MMAP=1 2023-10-05T11:34:18,507 running bdist_wheel 2023-10-05T11:34:18,516 running build 2023-10-05T11:34:18,517 running build_py 2023-10-05T11:34:18,522 creating build 2023-10-05T11:34:18,523 creating build/lib.linux-armv7l-cpython-311 2023-10-05T11:34:18,524 creating build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,525 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,527 copying pysam/version.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,529 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,531 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,533 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,536 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,537 copying pysam/config.py -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,540 creating build/lib.linux-armv7l-cpython-311/pysam/include 2023-10-05T11:34:18,540 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam/include 2023-10-05T11:34:18,544 running egg_info 2023-10-05T11:34:18,549 writing pysam.egg-info/PKG-INFO 2023-10-05T11:34:18,551 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-10-05T11:34:18,553 writing top-level names to pysam.egg-info/top_level.txt 2023-10-05T11:34:18,609 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T11:34:18,645 reading manifest template 'MANIFEST.in' 2023-10-05T11:34:18,646 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T11:34:18,646 warning: no files found matching 'THANKS' 2023-10-05T11:34:18,653 no previously-included directories found matching 'tests/' 2023-10-05T11:34:18,756 adding license file 'COPYING' 2023-10-05T11:34:18,757 adding license file 'AUTHORS' 2023-10-05T11:34:18,780 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T11:34:18,785 /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. 2023-10-05T11:34:18,785 !! 2023-10-05T11:34:18,786 ******************************************************************************** 2023-10-05T11:34:18,787 ############################ 2023-10-05T11:34:18,787 # Package would be ignored # 2023-10-05T11:34:18,787 ############################ 2023-10-05T11:34:18,788 Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], 2023-10-05T11:34:18,788 but it is absent from setuptools' `packages` configuration. 2023-10-05T11:34:18,789 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T11:34:18,790 package, please make sure that 'pysam.include.htslib.cram' is explicitly added 2023-10-05T11:34:18,791 to the `packages` configuration field. 2023-10-05T11:34:18,792 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T11:34:18,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T11:34:18,793 instead of `find_packages(...)`/`find:`). 2023-10-05T11:34:18,794 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T11:34:18,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T11:34:18,796 If you don't want 'pysam.include.htslib.cram' to be distributed and are 2023-10-05T11:34:18,796 already explicitly excluding 'pysam.include.htslib.cram' via 2023-10-05T11:34:18,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T11:34:18,797 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T11:34:18,798 combination with a more fine grained `package-data` configuration. 2023-10-05T11:34:18,799 You can read more about "package data files" on setuptools documentation page: 2023-10-05T11:34:18,800 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T11:34:18,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T11:34:18,802 even if it does not contain any `.py` files. 2023-10-05T11:34:18,803 On the other hand, currently there is no concept of package data 2023-10-05T11:34:18,803 directory, all directories are treated like packages. 2023-10-05T11:34:18,804 ******************************************************************************** 2023-10-05T11:34:18,805 !! 2023-10-05T11:34:18,805 check.warn(importable) 2023-10-05T11:34:18,806 /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. 2023-10-05T11:34:18,806 !! 2023-10-05T11:34:18,808 ******************************************************************************** 2023-10-05T11:34:18,808 ############################ 2023-10-05T11:34:18,808 # Package would be ignored # 2023-10-05T11:34:18,809 ############################ 2023-10-05T11:34:18,809 Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], 2023-10-05T11:34:18,810 but it is absent from setuptools' `packages` configuration. 2023-10-05T11:34:18,810 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T11:34:18,811 package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added 2023-10-05T11:34:18,811 to the `packages` configuration field. 2023-10-05T11:34:18,812 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T11:34:18,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T11:34:18,813 instead of `find_packages(...)`/`find:`). 2023-10-05T11:34:18,814 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T11:34:18,814 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T11:34:18,815 If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are 2023-10-05T11:34:18,816 already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via 2023-10-05T11:34:18,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T11:34:18,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T11:34:18,817 combination with a more fine grained `package-data` configuration. 2023-10-05T11:34:18,818 You can read more about "package data files" on setuptools documentation page: 2023-10-05T11:34:18,819 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T11:34:18,821 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T11:34:18,822 even if it does not contain any `.py` files. 2023-10-05T11:34:18,822 On the other hand, currently there is no concept of package data 2023-10-05T11:34:18,823 directory, all directories are treated like packages. 2023-10-05T11:34:18,823 ******************************************************************************** 2023-10-05T11:34:18,824 !! 2023-10-05T11:34:18,825 check.warn(importable) 2023-10-05T11:34:18,825 /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. 2023-10-05T11:34:18,826 !! 2023-10-05T11:34:18,827 ******************************************************************************** 2023-10-05T11:34:18,828 ############################ 2023-10-05T11:34:18,828 # Package would be ignored # 2023-10-05T11:34:18,829 ############################ 2023-10-05T11:34:18,829 Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], 2023-10-05T11:34:18,830 but it is absent from setuptools' `packages` configuration. 2023-10-05T11:34:18,831 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T11:34:18,831 package, please make sure that 'pysam.include.htslib.m4' is explicitly added 2023-10-05T11:34:18,832 to the `packages` configuration field. 2023-10-05T11:34:18,833 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T11:34:18,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T11:34:18,834 instead of `find_packages(...)`/`find:`). 2023-10-05T11:34:18,835 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T11:34:18,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T11:34:18,836 If you don't want 'pysam.include.htslib.m4' to be distributed and are 2023-10-05T11:34:18,837 already explicitly excluding 'pysam.include.htslib.m4' via 2023-10-05T11:34:18,837 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T11:34:18,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T11:34:18,838 combination with a more fine grained `package-data` configuration. 2023-10-05T11:34:18,839 You can read more about "package data files" on setuptools documentation page: 2023-10-05T11:34:18,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T11:34:18,841 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T11:34:18,842 even if it does not contain any `.py` files. 2023-10-05T11:34:18,842 On the other hand, currently there is no concept of package data 2023-10-05T11:34:18,843 directory, all directories are treated like packages. 2023-10-05T11:34:18,843 ******************************************************************************** 2023-10-05T11:34:18,844 !! 2023-10-05T11:34:18,845 check.warn(importable) 2023-10-05T11:34:18,845 /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. 2023-10-05T11:34:18,846 !! 2023-10-05T11:34:18,847 ******************************************************************************** 2023-10-05T11:34:18,848 ############################ 2023-10-05T11:34:18,848 # Package would be ignored # 2023-10-05T11:34:18,849 ############################ 2023-10-05T11:34:18,849 Python recognizes 'pysam.include.htslib.os' as an importable package[^1], 2023-10-05T11:34:18,850 but it is absent from setuptools' `packages` configuration. 2023-10-05T11:34:18,851 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T11:34:18,852 package, please make sure that 'pysam.include.htslib.os' is explicitly added 2023-10-05T11:34:18,853 to the `packages` configuration field. 2023-10-05T11:34:18,855 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T11:34:18,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T11:34:18,864 instead of `find_packages(...)`/`find:`). 2023-10-05T11:34:18,888 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T11:34:18,890 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T11:34:18,891 If you don't want 'pysam.include.htslib.os' to be distributed and are 2023-10-05T11:34:18,892 already explicitly excluding 'pysam.include.htslib.os' via 2023-10-05T11:34:18,892 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T11:34:18,893 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T11:34:18,894 combination with a more fine grained `package-data` configuration. 2023-10-05T11:34:18,895 You can read more about "package data files" on setuptools documentation page: 2023-10-05T11:34:18,896 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T11:34:18,899 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T11:34:18,899 even if it does not contain any `.py` files. 2023-10-05T11:34:18,900 On the other hand, currently there is no concept of package data 2023-10-05T11:34:18,901 directory, all directories are treated like packages. 2023-10-05T11:34:18,901 ******************************************************************************** 2023-10-05T11:34:18,908 !! 2023-10-05T11:34:18,909 check.warn(importable) 2023-10-05T11:34:18,909 /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. 2023-10-05T11:34:18,910 !! 2023-10-05T11:34:18,910 ******************************************************************************** 2023-10-05T11:34:18,911 ############################ 2023-10-05T11:34:18,911 # Package would be ignored # 2023-10-05T11:34:18,912 ############################ 2023-10-05T11:34:18,912 Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], 2023-10-05T11:34:18,913 but it is absent from setuptools' `packages` configuration. 2023-10-05T11:34:18,926 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T11:34:18,935 package, please make sure that 'pysam.include.samtools.lz4' is explicitly added 2023-10-05T11:34:18,942 to the `packages` configuration field. 2023-10-05T11:34:18,943 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T11:34:18,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T11:34:18,944 instead of `find_packages(...)`/`find:`). 2023-10-05T11:34:18,945 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T11:34:18,946 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T11:34:18,947 If you don't want 'pysam.include.samtools.lz4' to be distributed and are 2023-10-05T11:34:18,948 already explicitly excluding 'pysam.include.samtools.lz4' via 2023-10-05T11:34:18,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T11:34:18,949 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T11:34:18,949 combination with a more fine grained `package-data` configuration. 2023-10-05T11:34:18,950 You can read more about "package data files" on setuptools documentation page: 2023-10-05T11:34:18,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T11:34:18,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T11:34:18,954 even if it does not contain any `.py` files. 2023-10-05T11:34:18,955 On the other hand, currently there is no concept of package data 2023-10-05T11:34:18,955 directory, all directories are treated like packages. 2023-10-05T11:34:18,956 ******************************************************************************** 2023-10-05T11:34:18,957 !! 2023-10-05T11:34:18,958 check.warn(importable) 2023-10-05T11:34:18,958 copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,959 copying pysam/csamtools_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,959 copying pysam/htslib_util.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,960 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,960 copying pysam/libcalignedsegment.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,961 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,962 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,962 copying pysam/libcalignedsegment.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,963 copying pysam/libcalignmentfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,964 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,964 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,965 copying pysam/libcalignmentfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:18,965 copying pysam/libcbcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,029 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,031 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,034 copying pysam/libcbcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,039 copying pysam/libcbcftools.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,045 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,047 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,049 copying pysam/libcbcftools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,051 copying pysam/libcbgzf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,066 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,068 copying pysam/libcbgzf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,070 copying pysam/libcfaidx.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,090 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,092 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,094 copying pysam/libcfaidx.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,097 copying pysam/libchtslib.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,123 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,127 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,129 copying pysam/libchtslib.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,132 copying pysam/libcsamfile.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,141 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,143 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,146 copying pysam/libcsamfile.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,148 copying pysam/libcsamtools.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,154 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,156 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,159 copying pysam/libcsamtools.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,161 copying pysam/libctabix.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,188 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,190 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,192 copying pysam/libctabix.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,195 copying pysam/libctabixproxies.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,221 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,223 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,225 copying pysam/libctabixproxies.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,228 copying pysam/libcutils.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,241 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,243 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,245 copying pysam/libcutils.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,248 copying pysam/libcvcf.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,282 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,284 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,286 copying pysam/libcvcf.pyx -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,289 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,290 copying pysam/pysam_stream.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,292 copying pysam/pysam_util.c -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,294 copying pysam/pysam_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,296 copying pysam/version.h -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,298 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2023-10-05T11:34:19,300 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,301 copying samtools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,303 copying samtools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,306 copying samtools/amplicon_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,310 copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,313 copying samtools/bam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,316 copying samtools/bam.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,319 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,321 copying samtools/bam2depth.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,323 copying samtools/bam2depth.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,327 copying samtools/bam_addrprg.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,329 copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,332 copying samtools/bam_ampliconclip.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,335 copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,338 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,340 copying samtools/bam_aux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,343 copying samtools/bam_aux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,345 copying samtools/bam_cat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,347 copying samtools/bam_cat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,350 copying samtools/bam_color.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,353 copying samtools/bam_color.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,355 copying samtools/bam_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,360 copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,364 copying samtools/bam_fastq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,367 copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,370 copying samtools/bam_flags.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,372 copying samtools/bam_flags.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,375 copying samtools/bam_import.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,378 copying samtools/bam_import.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,380 copying samtools/bam_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,383 copying samtools/bam_index.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,385 copying samtools/bam_lpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,388 copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,390 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,392 copying samtools/bam_markdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,396 copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,400 copying samtools/bam_mate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,402 copying samtools/bam_mate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,405 copying samtools/bam_md.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,408 copying samtools/bam_md.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,411 copying samtools/bam_plbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,413 copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,415 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,417 copying samtools/bam_plcmd.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,420 copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,423 copying samtools/bam_quickcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,426 copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,428 copying samtools/bam_reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,431 copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,434 copying samtools/bam_rmdup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,436 copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,439 copying samtools/bam_rmdupse.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,441 copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,444 copying samtools/bam_samples.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,447 copying samtools/bam_samples.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,449 copying samtools/bam_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,454 copying samtools/bam_sort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,459 copying samtools/bam_split.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,462 copying samtools/bam_split.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,465 copying samtools/bam_stat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,468 copying samtools/bam_stat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,471 copying samtools/bamshuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,473 copying samtools/bamshuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,476 copying samtools/bamtk.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,479 copying samtools/bamtk.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,481 copying samtools/bedcov.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,484 copying samtools/bedcov.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,486 copying samtools/bedidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,489 copying samtools/bedidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,492 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,494 copying samtools/consensus_pileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,497 copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,500 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,502 copying samtools/coverage.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,505 copying samtools/coverage.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,508 copying samtools/cram_size.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,511 copying samtools/cram_size.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,514 copying samtools/cut_target.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,517 copying samtools/cut_target.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,519 copying samtools/dict.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,522 copying samtools/dict.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,525 copying samtools/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,528 copying samtools/faidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,531 copying samtools/padding.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,533 copying samtools/padding.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,536 copying samtools/phase.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,540 copying samtools/phase.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,542 copying samtools/reference.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,545 copying samtools/reference.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,548 copying samtools/reset.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,551 copying samtools/reset.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,553 copying samtools/sam_opts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,556 copying samtools/sam_opts.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,559 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,561 copying samtools/sam_utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,563 copying samtools/sam_utils.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,566 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,568 copying samtools/sam_view.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,572 copying samtools/sam_view.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,577 copying samtools/sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,579 copying samtools/sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,582 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,584 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,587 copying samtools/samtools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,589 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,592 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,595 copying samtools/stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,600 copying samtools/stats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,606 copying samtools/stats_isize.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,609 copying samtools/stats_isize.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,612 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,615 copying samtools/tmp_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,618 copying samtools/tmp_file.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,621 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,624 copying samtools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,626 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-10-05T11:34:19,627 copying samtools/lz4/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-10-05T11:34:19,630 copying samtools/lz4/lz4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-10-05T11:34:19,635 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-10-05T11:34:19,640 copying samtools/lz4/lz4.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4 2023-10-05T11:34:19,643 copying samtools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2023-10-05T11:34:19,646 creating build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,647 copying bcftools/HMM.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,651 copying bcftools/HMM.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,654 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,657 copying bcftools/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,661 copying bcftools/README -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,664 copying bcftools/abuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,668 copying bcftools/abuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,671 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,673 copying bcftools/bam2bcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,676 copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,679 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,681 copying bcftools/bam2bcf_iaux.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,684 copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,687 copying bcftools/bam2bcf_indel.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,690 copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,693 copying bcftools/bam_sample.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,696 copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,698 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,700 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,703 copying bcftools/bcftools.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,705 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,706 copying bcftools/bin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,709 copying bcftools/bin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,711 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,713 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,715 copying bcftools/ccall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,718 copying bcftools/ccall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,721 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,723 copying bcftools/cols.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,725 copying bcftools/cols.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,727 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,729 copying bcftools/consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,733 copying bcftools/consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,737 copying bcftools/convert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,741 copying bcftools/convert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,745 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,747 copying bcftools/csq.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,752 copying bcftools/csq.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,757 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,759 copying bcftools/dist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,761 copying bcftools/dist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,763 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,766 copying bcftools/em.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,768 copying bcftools/em.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,770 copying bcftools/extsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,773 copying bcftools/extsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,775 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,777 copying bcftools/filter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,782 copying bcftools/filter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,786 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,788 copying bcftools/gff.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,791 copying bcftools/gff.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,794 copying bcftools/gff.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,797 copying bcftools/gvcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,799 copying bcftools/gvcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,802 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,804 copying bcftools/hclust.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,806 copying bcftools/hclust.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,809 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,811 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,813 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,815 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,817 copying bcftools/kmin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,820 copying bcftools/kmin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,822 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,824 copying bcftools/main.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,827 copying bcftools/main.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,829 copying bcftools/mcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,833 copying bcftools/mcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,837 copying bcftools/mpileup.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,840 copying bcftools/mpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,844 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,847 copying bcftools/ploidy.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,850 copying bcftools/ploidy.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,852 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,854 copying bcftools/prob1.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,857 copying bcftools/prob1.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,860 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,862 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,864 copying bcftools/read_consensus.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,867 copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,870 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,872 copying bcftools/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,874 copying bcftools/regidx.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,877 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,879 copying bcftools/reheader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,881 copying bcftools/reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,884 copying bcftools/smpl_ilist.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,887 copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,889 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,891 copying bcftools/str_finder.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,893 copying bcftools/str_finder.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,895 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,897 copying bcftools/tabix.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,900 copying bcftools/tabix.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,902 copying bcftools/tsv2vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,904 copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,906 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,908 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,911 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,914 copying bcftools/vcfannotate.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,919 copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,923 copying bcftools/vcfbuf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,926 copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,929 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,931 copying bcftools/vcfcall.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,934 copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,937 copying bcftools/vcfcnv.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,940 copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,944 copying bcftools/vcfconcat.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,948 copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,951 copying bcftools/vcfconvert.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,955 copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,958 copying bcftools/vcffilter.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,961 copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,964 copying bcftools/vcfgtcheck.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,968 copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,971 copying bcftools/vcfhead.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,973 copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,975 copying bcftools/vcfindex.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,978 copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,980 copying bcftools/vcfisec.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,983 copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,986 copying bcftools/vcfmerge.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,990 copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,994 copying bcftools/vcfnorm.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:19,998 copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,002 copying bcftools/vcfplugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,005 copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,008 copying bcftools/vcfquery.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,011 copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,014 copying bcftools/vcfroh.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,017 copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,021 copying bcftools/vcfsom.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,024 copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,028 copying bcftools/vcfsort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,030 copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,033 copying bcftools/vcfstats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,037 copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,042 copying bcftools/vcfview.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,045 copying bcftools/vcfview.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,049 copying bcftools/vcmp.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,051 copying bcftools/vcmp.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,054 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,056 copying bcftools/version.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,058 copying bcftools/version.c.pysam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,061 copying bcftools/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,062 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2023-10-05T11:34:20,065 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,065 copying htslib/LICENSE -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,067 copying htslib/Makefile -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,070 copying htslib/README -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,072 copying htslib/bcf_sr_sort.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,075 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,077 copying htslib/bgzf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,081 copying htslib/bgzip.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,084 copying htslib/builddir_vars.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,086 copying htslib/config.h.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,088 copying htslib/config.mk.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,090 copying htslib/configure -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,095 copying htslib/configure.ac -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,098 copying htslib/errmod.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,100 copying htslib/faidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,103 copying htslib/header.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,106 copying htslib/header.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,109 copying htslib/hfile.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,111 copying htslib/hfile_gcs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,114 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,116 copying htslib/hfile_libcurl.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,119 copying htslib/hfile_s3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,122 copying htslib/hfile_s3_write.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,125 copying htslib/hts.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,129 copying htslib/hts_expr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,132 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,135 copying htslib/hts_os.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,137 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,139 copying htslib/htscodecs_bundled.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,141 copying htslib/htscodecs_external.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,143 copying htslib/htsfile.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,145 copying htslib/htslib.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,148 copying htslib/htslib.pc.in -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,149 copying htslib/htslib_vars.mk -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,151 copying htslib/kfunc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,154 copying htslib/kstring.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,156 copying htslib/md5.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,158 copying htslib/multipart.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,161 copying htslib/plugin.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,163 copying htslib/probaln.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,165 copying htslib/realn.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,168 copying htslib/regidx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,171 copying htslib/region.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,173 copying htslib/sam.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,179 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,181 copying htslib/sam_mods.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,184 copying htslib/synced_bcf_reader.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,187 copying htslib/tabix.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,190 copying htslib/tbx.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,192 copying htslib/textutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,195 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,197 copying htslib/thread_pool.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,200 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,203 copying htslib/vcf.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,208 copying htslib/vcf_sweep.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,210 copying htslib/vcfutils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,213 copying htslib/version.sh -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,215 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,216 copying htslib/cram/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,218 copying htslib/cram/cram_codecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,222 copying htslib/cram/cram_codecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,225 copying htslib/cram/cram_decode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,230 copying htslib/cram/cram_decode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,232 copying htslib/cram/cram_encode.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,238 copying htslib/cram/cram_encode.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,240 copying htslib/cram/cram_external.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,243 copying htslib/cram/cram_index.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,246 copying htslib/cram/cram_index.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,248 copying htslib/cram/cram_io.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,253 copying htslib/cram/cram_io.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,256 copying htslib/cram/cram_samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,258 copying htslib/cram/cram_stats.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,260 copying htslib/cram/cram_stats.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,262 copying htslib/cram/cram_structs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,265 copying htslib/cram/mFILE.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,268 copying htslib/cram/mFILE.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,270 copying htslib/cram/misc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,272 copying htslib/cram/open_trace_file.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,274 copying htslib/cram/open_trace_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,277 copying htslib/cram/os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,279 copying htslib/cram/pooled_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,281 copying htslib/cram/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,283 copying htslib/cram/string_alloc.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,286 copying htslib/cram/string_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram 2023-10-05T11:34:20,288 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs 2023-10-05T11:34:20,288 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,289 copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,292 copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,294 copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,296 copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,299 copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,302 copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,304 copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,306 copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,308 copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,310 copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,313 copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,315 copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,318 copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,320 copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,323 copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,326 copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,328 copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,331 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,334 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,336 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,340 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,343 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,347 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,350 copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,353 copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,356 copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,359 copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,361 copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,363 copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,367 copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,369 copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,372 copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,375 copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,378 copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,381 copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:34:20,384 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-10-05T11:34:20,385 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-10-05T11:34:20,388 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-10-05T11:34:20,390 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-10-05T11:34:20,393 copying htslib/m4/pkg.m4 -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4 2023-10-05T11:34:20,396 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-10-05T11:34:20,398 copying htslib/os/lzma_stub.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-10-05T11:34:20,400 copying htslib/os/rand.c -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os 2023-10-05T11:34:20,403 copying htslib/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2023-10-05T11:34:20,406 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,407 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,410 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,413 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,416 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,419 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,423 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,426 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,429 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,432 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,434 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,437 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,440 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,442 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,445 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,448 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,451 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,454 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,456 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,459 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,462 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,465 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,468 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,473 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,476 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,479 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,481 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,485 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,487 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2023-10-05T11:34:20,493 running build_ext 2023-10-05T11:34:20,498 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2023-10-05T11:34:20,499 building 'libhts.a' 2023-10-05T11:34:20,552 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2023-10-05T11:34:21,003 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2023-10-05T11:34:21,847 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2023-10-05T11:34:24,422 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2023-10-05T11:34:27,679 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2023-10-05T11:34:28,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2023-10-05T11:34:30,277 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2023-10-05T11:34:34,796 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2023-10-05T11:34:36,473 echo '#define HTS_VERSION_TEXT "1.18"' > version.h 2023-10-05T11:34:36,479 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2023-10-05T11:34:45,400 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2023-10-05T11:34:47,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2023-10-05T11:34:47,440 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2023-10-05T11:34:48,076 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2023-10-05T11:34:48,616 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2023-10-05T11:34:49,343 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2023-10-05T11:34:50,283 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2023-10-05T11:34:51,788 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2023-10-05T11:34:52,420 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2023-10-05T11:35:05,990 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c 2023-10-05T11:35:06,835 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2023-10-05T11:35:09,585 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2023-10-05T11:35:09,930 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2023-10-05T11:35:10,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2023-10-05T11:35:11,760 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2023-10-05T11:35:12,667 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2023-10-05T11:35:27,372 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2023-10-05T11:35:30,631 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2023-10-05T11:35:36,177 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2023-10-05T11:35:42,453 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2023-10-05T11:35:50,518 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c 2023-10-05T11:35:51,664 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c 2023-10-05T11:35:53,145 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c 2023-10-05T11:36:00,903 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c 2023-10-05T11:36:01,623 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c 2023-10-05T11:36:02,280 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c 2023-10-05T11:36:02,797 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2023-10-05T11:36:02,974 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c 2023-10-05T11:36:03,164 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2023-10-05T11:36:06,927 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2023-10-05T11:36:11,720 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2023-10-05T11:36:11,788 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2023-10-05T11:36:12,604 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2023-10-05T11:36:17,481 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2023-10-05T11:36:17,538 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2023-10-05T11:36:17,594 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2023-10-05T11:36:17,651 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c 2023-10-05T11:36:17,709 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2023-10-05T11:36:20,884 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2023-10-05T11:36:22,985 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2023-10-05T11:36:23,449 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2023-10-05T11:36:26,397 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2023-10-05T11:36:26,667 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2023-10-05T11:36:29,165 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2023-10-05T11:36:29,647 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2023-10-05T11:36:32,655 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3_write.o hfile_s3_write.c 2023-10-05T11:36:34,090 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T11:36:34,442 ranlib libhts.a 2023-10-05T11:36:39,894 Compiling pysam/libchtslib.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T11:36:39,895 [1/1] Cythonizing pysam/libchtslib.pyx 2023-10-05T11:36:39,896 building 'pysam.libchtslib' extension 2023-10-05T11:36:39,897 creating build/temp.linux-armv7l-cpython-311 2023-10-05T11:36:39,898 creating build/temp.linux-armv7l-cpython-311/pysam 2023-10-05T11:36:39,899 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:36:40,216 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:16,081 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o htslib/hfile_s3_write.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:37:16,724 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2023-10-05T11:37:16,730 building 'pysam.libcsamtools' extension 2023-10-05T11:37:16,732 creating build/temp.linux-armv7l-cpython-311/samtools 2023-10-05T11:37:16,735 creating build/temp.linux-armv7l-cpython-311/samtools/lz4 2023-10-05T11:37:16,736 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:18,945 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:23,138 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:23,726 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:26,275 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:27,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:29,140 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:29,370 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:30,160 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:30,457 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:33,679 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:35,168 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:35,418 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:36,433 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:36,901 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:37,522 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:42,627 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:44,232 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:45,364 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:45,584 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:48,035 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:48,392 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:49,190 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:50,675 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:51,898 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:37:52,743 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:03,242 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:04,553 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:05,360 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:07,646 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:08,145 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:09,250 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:11,025 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:11,665 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:12,811 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:13,884 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:14,552 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:15,623 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:16,245 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:22,528 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:23,886 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:27,064 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:28,037 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:29,122 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:29,443 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:29,965 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:33,080 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:33,886 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:34,094 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:39,327 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:39,984 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:40,460 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:38:40,873 building 'pysam.libcbcftools' extension 2023-10-05T11:38:40,875 creating build/temp.linux-armv7l-cpython-311/bcftools 2023-10-05T11:38:40,877 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:41,931 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:44,725 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:47,265 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:48,942 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:51,452 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:53,430 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:53,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:53,960 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:54,684 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:54,919 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:38:57,469 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:03,787 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:11,072 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:11,342 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:11,952 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:12,496 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:26,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/gff.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:29,750 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:30,349 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:30,984 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:31,422 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:31,757 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:35,670 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:38,361 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:39,463 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:41,068 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:42,997 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:44,418 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:47,630 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:48,098 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:48,537 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:48,903 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:49,282 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:39:58,856 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:00,234 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:02,968 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:05,093 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:07,874 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:11,718 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:13,320 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:16,412 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:16,771 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:17,417 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:19,213 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:21,907 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2023-10-05T11:40:21,908 bcftools/vcfmerge.c.pysam.c:860:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-05T11:40:21,908 860 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2023-10-05T11:40:21,909 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:40:21,910 In file included from /tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib/htslib/kstring.h:30, 2023-10-05T11:40:21,910 from /tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib/htslib/hts.h:37, 2023-10-05T11:40:21,911 from /tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib/htslib/vcf.h:39, 2023-10-05T11:40:21,912 from bcftools/vcfmerge.c.pysam.c:35: 2023-10-05T11:40:21,912 /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 2023-10-05T11:40:21,913 556 | extern void *calloc (size_t __nmemb, size_t __size) 2023-10-05T11:40:21,914 | ^~~~~~ 2023-10-05T11:40:31,817 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:41,097 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:41,391 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:42,672 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:45,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:46,713 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:47,542 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:52,426 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:54,492 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:54,942 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:55,333 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:40:57,533 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:41:00,298 Compiling pysam/libcutils.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T11:41:00,298 [1/1] Cythonizing pysam/libcutils.pyx 2023-10-05T11:41:00,299 building 'pysam.libcutils' extension 2023-10-05T11:41:00,300 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:41:19,260 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-311/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:41:19,417 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcutils.o build/temp.linux-armv7l-cpython-311/pysam/pysam_util.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcsamtools.cpython-311-arm-linux-gnueabihf -lcbcftools.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:41:22,635 warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:22,636 warning: pysam/libcalignmentfile.pyx:2579:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:22,638 warning: pysam/libcalignmentfile.pyx:2584:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:22,643 warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:22,644 warning: pysam/libcalignmentfile.pyx:2628:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:22,646 warning: pysam/libcalignmentfile.pyx:2633:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T11:41:23,770 Compiling pysam/libcalignmentfile.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:41:23,771 [1/1] Cythonizing pysam/libcalignmentfile.pyx 2023-10-05T11:41:23,772 building 'pysam.libcalignmentfile' extension 2023-10-05T11:41:23,773 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:41:30,954 pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: 2023-10-05T11:41:30,975 pysam/libcalignmentfile.c:20433:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:41:30,975 20433 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); 2023-10-05T11:41:30,976 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:41:31,295 pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: 2023-10-05T11:41:31,330 pysam/libcalignmentfile.c:37154:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:41:31,331 37154 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); 2023-10-05T11:41:31,331 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:43:12,561 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:43:14,605 Compiling pysam/libcsamfile.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:43:14,606 [1/1] Cythonizing pysam/libcsamfile.pyx 2023-10-05T11:43:14,607 building 'pysam.libcsamfile' extension 2023-10-05T11:43:14,607 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:43:20,022 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:43:22,393 warning: pysam/libcalignedsegment.pyx:760:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-10-05T11:43:22,394 warning: pysam/libcalignedsegment.pyx:760:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-10-05T11:43:26,253 Compiling pysam/libcalignedsegment.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:43:26,253 [1/1] Cythonizing pysam/libcalignedsegment.pyx 2023-10-05T11:43:26,254 building 'pysam.libcalignedsegment' extension 2023-10-05T11:43:26,254 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:45:28,387 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:45:32,149 Compiling pysam/libctabix.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T11:45:32,149 [1/1] Cythonizing pysam/libctabix.pyx 2023-10-05T11:45:32,150 building 'pysam.libctabix' extension 2023-10-05T11:45:32,150 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:46:17,745 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:46:20,384 Compiling pysam/libcfaidx.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:46:20,385 [1/1] Cythonizing pysam/libcfaidx.pyx 2023-10-05T11:46:20,385 building 'pysam.libcfaidx' extension 2023-10-05T11:46:20,386 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:46:45,824 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:46:53,400 Compiling pysam/libcbcf.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:46:53,401 [1/1] Cythonizing pysam/libcbcf.pyx 2023-10-05T11:46:53,401 building 'pysam.libcbcf' extension 2023-10-05T11:46:53,402 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:47:09,176 pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: 2023-10-05T11:47:09,261 pysam/libcbcf.c:86758:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:47:09,262 86758 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-10-05T11:47:09,263 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:47:09,415 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: 2023-10-05T11:47:09,495 pysam/libcbcf.c:81422:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:47:09,496 81422 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-10-05T11:47:09,497 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:47:09,824 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: 2023-10-05T11:47:09,867 pysam/libcbcf.c:44522:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:47:09,868 44522 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); 2023-10-05T11:47:09,869 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:47:09,907 pysam/libcbcf.c:44548:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:47:09,908 44548 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); 2023-10-05T11:47:09,908 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:47:10,232 pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: 2023-10-05T11:47:10,308 pysam/libcbcf.c:81106:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-05T11:47:10,309 81106 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); 2023-10-05T11:47:10,309 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:49:49,052 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:49:51,640 Compiling pysam/libcbgzf.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:49:51,641 [1/1] Cythonizing pysam/libcbgzf.pyx 2023-10-05T11:49:51,641 building 'pysam.libcbgzf' extension 2023-10-05T11:49:51,642 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:50:04,265 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:50:06,667 Compiling pysam/libctabixproxies.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2023-10-05T11:50:06,667 [1/1] Cythonizing pysam/libctabixproxies.pyx 2023-10-05T11:50:06,668 building 'pysam.libctabixproxies' extension 2023-10-05T11:50:06,668 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:50:46,863 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:50:47,405 warning: pysam/libcvcf.pyx:1083:27: Unreachable code 2023-10-05T11:50:50,505 Compiling pysam/libcvcf.pyx because it depends on /tmp/pip-build-env-nxq60npo/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2023-10-05T11:50:50,505 [1/1] Cythonizing pysam/libcvcf.pyx 2023-10-05T11:50:50,506 building 'pysam.libcvcf' extension 2023-10-05T11:50:50,507 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/htslib -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/samtools/lz4 -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/bcftools -I/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T11:52:24,922 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2023-10-05T11:52:24,952 pysam/libcvcf.c:29577:16: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-05T11:52:24,952 29577 | __pyx_t_11 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 873, __pyx_L1_error) 2023-10-05T11:52:24,953 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T11:52:24,976 pysam/libcvcf.c:24726:10: note: ‘__pyx_v_qual’ was declared here 2023-10-05T11:52:24,977 24726 | double __pyx_v_qual; 2023-10-05T11:52:24,978 | ^~~~~~~~~~~~ 2023-10-05T11:52:53,401 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a/pysam -L/tmp/pip-wheel-c8htry7_/pysam_20c210bd190747909682b428678ea81a -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T11:52:54,666 installing to build/bdist.linux-armv7l/wheel 2023-10-05T11:52:54,667 running install 2023-10-05T11:52:54,692 running install_lib 2023-10-05T11:52:54,697 creating build/bdist.linux-armv7l 2023-10-05T11:52:54,697 creating build/bdist.linux-armv7l/wheel 2023-10-05T11:52:54,701 creating build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,702 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,705 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,746 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,769 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,823 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,825 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,859 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,948 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,957 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,959 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,962 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,964 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,966 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,968 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,972 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,974 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:54,976 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,002 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,005 copying build/lib.linux-armv7l-cpython-311/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,008 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,010 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,018 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,039 copying build/lib.linux-armv7l-cpython-311/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,040 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,060 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,062 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,103 copying build/lib.linux-armv7l-cpython-311/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,104 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,110 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,184 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,195 copying build/lib.linux-armv7l-cpython-311/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,197 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,199 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,201 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,206 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,236 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,242 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,244 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,246 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,300 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,304 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,350 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,361 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,363 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,413 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,415 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,417 copying build/lib.linux-armv7l-cpython-311/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,419 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,421 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,424 copying build/lib.linux-armv7l-cpython-311/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,425 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,427 copying build/lib.linux-armv7l-cpython-311/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,429 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,433 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,435 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,437 copying build/lib.linux-armv7l-cpython-311/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,440 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,441 copying build/lib.linux-armv7l-cpython-311/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,443 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,461 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:55,463 creating build/bdist.linux-armv7l/wheel/pysam/include 2023-10-05T11:52:55,466 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,467 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,470 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,473 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,475 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,479 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,483 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,485 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,486 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,489 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,492 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,494 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,497 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,499 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,501 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,503 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,506 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,508 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,511 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,513 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,516 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,518 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,521 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,523 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,525 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,528 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,530 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,533 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,536 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,538 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,541 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,545 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,548 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,549 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,552 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,555 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,559 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,561 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,563 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,565 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,567 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,570 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,572 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,575 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,578 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,580 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,582 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,585 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_view.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,588 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,590 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,593 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,596 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,599 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,603 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,606 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,608 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,611 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,614 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_cat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,617 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,620 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,622 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,625 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,629 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,631 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,634 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,637 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cut_target.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,640 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,645 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,648 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,653 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,655 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,658 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,661 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T11:52:55,662 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T11:52:55,666 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T11:52:55,668 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T11:52:55,671 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T11:52:55,675 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,678 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_mate.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,682 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,686 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,689 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,692 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,696 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,698 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_color.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,700 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,704 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,706 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_import.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,709 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,711 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,714 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,716 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/coverage.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,719 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,721 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,723 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamtk.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,726 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,728 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,730 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,733 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,735 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,737 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,739 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reference.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,742 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,746 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,749 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_md.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,752 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_aux.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,754 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,757 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,760 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bamshuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,763 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam2depth.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,766 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/reset.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,768 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,771 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,773 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_flags.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,775 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,777 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,779 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,782 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/README -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,784 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,787 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/padding.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,790 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T11:52:55,792 copying build/lib.linux-armv7l-cpython-311/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include 2023-10-05T11:52:55,797 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,798 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,800 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,804 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,806 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,808 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,811 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,813 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,816 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,818 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,821 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,823 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,825 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,828 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,831 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,834 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,837 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,839 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,841 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,846 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,848 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,851 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,855 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,857 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,860 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,862 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,864 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,867 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,869 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,873 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,875 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,877 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,879 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfview.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,882 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,884 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,886 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,890 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,893 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,895 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,897 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,899 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,901 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,903 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,905 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,907 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,910 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,913 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,915 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,918 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,920 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,922 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,925 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,927 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,930 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,932 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,935 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,938 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,940 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,943 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/em.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,946 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,952 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,955 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,959 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,961 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,964 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,966 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,970 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,973 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,975 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,977 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,982 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,984 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,987 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,989 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,992 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:55,997 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,001 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,006 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,008 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,012 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,021 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,029 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,036 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/csq.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,048 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,052 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,054 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,056 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,059 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,062 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,065 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,067 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,070 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,072 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,074 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,076 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/main.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,079 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,082 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,085 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,089 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,092 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,095 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,099 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,100 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,102 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,105 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,107 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,112 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,115 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,118 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,120 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,125 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,128 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,135 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,139 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,141 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,143 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,146 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,148 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,156 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,158 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,161 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,165 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,168 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,172 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,176 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,179 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,180 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,184 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,188 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,193 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,196 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,198 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,202 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,208 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,210 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,212 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,215 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,218 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,221 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,223 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,225 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,229 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,232 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,235 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,239 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,241 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,244 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/README -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,246 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,248 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T11:52:56,255 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,256 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,258 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,260 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcfutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,263 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/errmod.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,265 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,272 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,275 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,280 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,283 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,286 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,289 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kfunc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,291 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,293 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,296 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,298 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,300 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,302 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,304 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/region.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,307 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,310 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htsfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,314 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,315 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,318 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,321 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,323 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,327 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,330 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,333 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,337 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,339 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,342 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,345 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,347 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,349 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,352 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,354 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,358 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,360 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,363 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,367 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,370 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,374 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,377 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,381 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,385 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,388 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,392 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,398 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,405 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T11:52:56,409 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,412 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,417 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,419 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/kstring.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,423 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs 2023-10-05T11:52:56,425 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,427 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,430 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,433 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,436 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,438 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,441 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,443 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,446 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,450 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,453 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,458 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,461 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,464 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,468 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,470 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,473 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,475 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,477 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,479 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,482 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,484 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,486 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,490 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,492 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,495 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,498 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,500 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,503 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,506 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,508 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,510 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,512 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,514 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,517 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,520 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T11:52:56,522 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,524 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/md5.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,526 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,528 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,535 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/Makefile -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,538 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,542 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,545 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,546 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,549 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzip.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,551 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,554 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/probaln.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,557 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/multipart.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,560 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T11:52:56,561 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/rand.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T11:52:56,563 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T11:52:56,566 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,567 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,572 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,574 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,577 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,579 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,582 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,584 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,586 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,591 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,593 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,596 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,598 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,600 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/misc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,602 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,604 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,606 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,608 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,610 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,612 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,614 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,616 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,619 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,623 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,628 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,631 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,633 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T11:52:56,635 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/tbx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,638 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_mods.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,641 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_s3_write.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,644 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T11:52:56,645 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T11:52:56,647 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T11:52:56,650 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T11:52:56,651 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T11:52:56,654 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,656 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,658 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/plugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,661 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/configure.ac -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,663 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_os.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,665 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,667 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,672 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,674 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,677 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,680 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,683 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_expr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,686 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,687 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/realn.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,690 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/README -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,692 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,694 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T11:52:56,697 copying build/lib.linux-armv7l-cpython-311/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,699 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,702 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,718 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,720 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,722 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,724 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,726 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,728 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,733 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,780 copying build/lib.linux-armv7l-cpython-311/pysam/py.typed -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,782 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,818 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,820 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,902 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,904 copying build/lib.linux-armv7l-cpython-311/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,905 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,907 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,909 copying build/lib.linux-armv7l-cpython-311/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,911 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,913 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T11:52:56,914 running install_egg_info 2023-10-05T11:52:56,919 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.22.0-py3.11.egg-info 2023-10-05T11:52:56,930 running install_scripts 2023-10-05T11:52:56,986 creating build/bdist.linux-armv7l/wheel/pysam-0.22.0.dist-info/WHEEL 2023-10-05T11:52:56,989 creating '/tmp/pip-wheel-2aaq2uva/.tmp-73il4idk/pysam-0.22.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-05T11:52:56,993 adding 'pysam/Pileup.py' 2023-10-05T11:52:56,995 adding 'pysam/__init__.py' 2023-10-05T11:52:56,996 adding 'pysam/bcftools.py' 2023-10-05T11:52:56,997 adding 'pysam/cbcftools_util.h' 2023-10-05T11:52:56,999 adding 'pysam/config.py' 2023-10-05T11:52:57,000 adding 'pysam/csamtools_util.h' 2023-10-05T11:52:57,001 adding 'pysam/htslib_util.c' 2023-10-05T11:52:57,003 adding 'pysam/htslib_util.h' 2023-10-05T11:52:57,265 adding 'pysam/libcalignedsegment.c' 2023-10-05T11:52:57,938 adding 'pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:52:57,965 adding 'pysam/libcalignedsegment.pxd' 2023-10-05T11:52:57,967 adding 'pysam/libcalignedsegment.pyi' 2023-10-05T11:52:57,979 adding 'pysam/libcalignedsegment.pyx' 2023-10-05T11:52:58,156 adding 'pysam/libcalignmentfile.c' 2023-10-05T11:52:58,700 adding 'pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:52:58,722 adding 'pysam/libcalignmentfile.pxd' 2023-10-05T11:52:58,724 adding 'pysam/libcalignmentfile.pyi' 2023-10-05T11:52:58,737 adding 'pysam/libcalignmentfile.pyx' 2023-10-05T11:52:59,035 adding 'pysam/libcbcf.c' 2023-10-05T11:52:59,951 adding 'pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:52:59,991 adding 'pysam/libcbcf.pxd' 2023-10-05T11:52:59,993 adding 'pysam/libcbcf.pyi' 2023-10-05T11:53:00,007 adding 'pysam/libcbcf.pyx' 2023-10-05T11:53:00,029 adding 'pysam/libcbcftools.c' 2023-10-05T11:53:00,878 adding 'pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:00,909 adding 'pysam/libcbcftools.pxd' 2023-10-05T11:53:00,910 adding 'pysam/libcbcftools.pyi' 2023-10-05T11:53:00,912 adding 'pysam/libcbcftools.pyx' 2023-10-05T11:53:00,959 adding 'pysam/libcbgzf.c' 2023-10-05T11:53:01,060 adding 'pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:01,065 adding 'pysam/libcbgzf.pyi' 2023-10-05T11:53:01,067 adding 'pysam/libcbgzf.pyx' 2023-10-05T11:53:01,142 adding 'pysam/libcfaidx.c' 2023-10-05T11:53:01,350 adding 'pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:01,359 adding 'pysam/libcfaidx.pxd' 2023-10-05T11:53:01,360 adding 'pysam/libcfaidx.pyi' 2023-10-05T11:53:01,363 adding 'pysam/libcfaidx.pyx' 2023-10-05T11:53:01,444 adding 'pysam/libchtslib.c' 2023-10-05T11:53:02,568 adding 'pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:02,623 adding 'pysam/libchtslib.pxd' 2023-10-05T11:53:02,625 adding 'pysam/libchtslib.pyi' 2023-10-05T11:53:02,628 adding 'pysam/libchtslib.pyx' 2023-10-05T11:53:02,665 adding 'pysam/libcsamfile.c' 2023-10-05T11:53:02,718 adding 'pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:02,721 adding 'pysam/libcsamfile.pxd' 2023-10-05T11:53:02,722 adding 'pysam/libcsamfile.pyi' 2023-10-05T11:53:02,724 adding 'pysam/libcsamfile.pyx' 2023-10-05T11:53:02,744 adding 'pysam/libcsamtools.c' 2023-10-05T11:53:03,340 adding 'pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:03,362 adding 'pysam/libcsamtools.pxd' 2023-10-05T11:53:03,363 adding 'pysam/libcsamtools.pyi' 2023-10-05T11:53:03,364 adding 'pysam/libcsamtools.pyx' 2023-10-05T11:53:03,463 adding 'pysam/libctabix.c' 2023-10-05T11:53:03,748 adding 'pysam/libctabix.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:03,761 adding 'pysam/libctabix.pxd' 2023-10-05T11:53:03,762 adding 'pysam/libctabix.pyi' 2023-10-05T11:53:03,767 adding 'pysam/libctabix.pyx' 2023-10-05T11:53:03,868 adding 'pysam/libctabixproxies.c' 2023-10-05T11:53:04,162 adding 'pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:04,174 adding 'pysam/libctabixproxies.pxd' 2023-10-05T11:53:04,176 adding 'pysam/libctabixproxies.pyi' 2023-10-05T11:53:04,179 adding 'pysam/libctabixproxies.pyx' 2023-10-05T11:53:04,235 adding 'pysam/libcutils.c' 2023-10-05T11:53:04,387 adding 'pysam/libcutils.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:04,393 adding 'pysam/libcutils.pxd' 2023-10-05T11:53:04,395 adding 'pysam/libcutils.pyi' 2023-10-05T11:53:04,397 adding 'pysam/libcutils.pyx' 2023-10-05T11:53:04,546 adding 'pysam/libcvcf.c' 2023-10-05T11:53:05,111 adding 'pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so' 2023-10-05T11:53:05,134 adding 'pysam/libcvcf.pxd' 2023-10-05T11:53:05,135 adding 'pysam/libcvcf.pyi' 2023-10-05T11:53:05,141 adding 'pysam/libcvcf.pyx' 2023-10-05T11:53:05,143 adding 'pysam/py.typed' 2023-10-05T11:53:05,144 adding 'pysam/pysam_stream.h' 2023-10-05T11:53:05,145 adding 'pysam/pysam_util.c' 2023-10-05T11:53:05,147 adding 'pysam/pysam_util.h' 2023-10-05T11:53:05,148 adding 'pysam/samtools.py' 2023-10-05T11:53:05,150 adding 'pysam/utils.py' 2023-10-05T11:53:05,151 adding 'pysam/version.h' 2023-10-05T11:53:05,153 adding 'pysam/version.py' 2023-10-05T11:53:05,154 adding 'pysam/version.pyi' 2023-10-05T11:53:05,156 adding 'pysam/include/__init__.py' 2023-10-05T11:53:05,162 adding 'pysam/include/bcftools/HMM.c' 2023-10-05T11:53:05,164 adding 'pysam/include/bcftools/HMM.c.pysam.c' 2023-10-05T11:53:05,166 adding 'pysam/include/bcftools/HMM.h' 2023-10-05T11:53:05,173 adding 'pysam/include/bcftools/LICENSE' 2023-10-05T11:53:05,174 adding 'pysam/include/bcftools/README' 2023-10-05T11:53:05,178 adding 'pysam/include/bcftools/abuf.c' 2023-10-05T11:53:05,182 adding 'pysam/include/bcftools/abuf.c.pysam.c' 2023-10-05T11:53:05,184 adding 'pysam/include/bcftools/abuf.h' 2023-10-05T11:53:05,190 adding 'pysam/include/bcftools/bam2bcf.c' 2023-10-05T11:53:05,196 adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' 2023-10-05T11:53:05,198 adding 'pysam/include/bcftools/bam2bcf.h' 2023-10-05T11:53:05,202 adding 'pysam/include/bcftools/bam2bcf_iaux.c' 2023-10-05T11:53:05,206 adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' 2023-10-05T11:53:05,211 adding 'pysam/include/bcftools/bam2bcf_indel.c' 2023-10-05T11:53:05,216 adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' 2023-10-05T11:53:05,218 adding 'pysam/include/bcftools/bam_sample.c' 2023-10-05T11:53:05,220 adding 'pysam/include/bcftools/bam_sample.c.pysam.c' 2023-10-05T11:53:05,221 adding 'pysam/include/bcftools/bam_sample.h' 2023-10-05T11:53:05,223 adding 'pysam/include/bcftools/bcftools.h' 2023-10-05T11:53:05,224 adding 'pysam/include/bcftools/bcftools.pysam.c' 2023-10-05T11:53:05,225 adding 'pysam/include/bcftools/bcftools.pysam.h' 2023-10-05T11:53:05,227 adding 'pysam/include/bcftools/bin.c' 2023-10-05T11:53:05,228 adding 'pysam/include/bcftools/bin.c.pysam.c' 2023-10-05T11:53:05,229 adding 'pysam/include/bcftools/bin.h' 2023-10-05T11:53:05,231 adding 'pysam/include/bcftools/call.h' 2023-10-05T11:53:05,233 adding 'pysam/include/bcftools/ccall.c' 2023-10-05T11:53:05,235 adding 'pysam/include/bcftools/ccall.c.pysam.c' 2023-10-05T11:53:05,237 adding 'pysam/include/bcftools/cigar_state.h' 2023-10-05T11:53:05,239 adding 'pysam/include/bcftools/cols.c' 2023-10-05T11:53:05,240 adding 'pysam/include/bcftools/cols.c.pysam.c' 2023-10-05T11:53:05,242 adding 'pysam/include/bcftools/cols.h' 2023-10-05T11:53:05,243 adding 'pysam/include/bcftools/config.h' 2023-10-05T11:53:05,249 adding 'pysam/include/bcftools/consensus.c' 2023-10-05T11:53:05,255 adding 'pysam/include/bcftools/consensus.c.pysam.c' 2023-10-05T11:53:05,261 adding 'pysam/include/bcftools/convert.c' 2023-10-05T11:53:05,268 adding 'pysam/include/bcftools/convert.c.pysam.c' 2023-10-05T11:53:05,270 adding 'pysam/include/bcftools/convert.h' 2023-10-05T11:53:05,285 adding 'pysam/include/bcftools/csq.c' 2023-10-05T11:53:05,301 adding 'pysam/include/bcftools/csq.c.pysam.c' 2023-10-05T11:53:05,304 adding 'pysam/include/bcftools/dbuf.h' 2023-10-05T11:53:05,305 adding 'pysam/include/bcftools/dist.c' 2023-10-05T11:53:05,307 adding 'pysam/include/bcftools/dist.c.pysam.c' 2023-10-05T11:53:05,308 adding 'pysam/include/bcftools/dist.h' 2023-10-05T11:53:05,310 adding 'pysam/include/bcftools/em.c' 2023-10-05T11:53:05,312 adding 'pysam/include/bcftools/em.c.pysam.c' 2023-10-05T11:53:05,314 adding 'pysam/include/bcftools/extsort.c' 2023-10-05T11:53:05,316 adding 'pysam/include/bcftools/extsort.c.pysam.c' 2023-10-05T11:53:05,317 adding 'pysam/include/bcftools/extsort.h' 2023-10-05T11:53:05,331 adding 'pysam/include/bcftools/filter.c' 2023-10-05T11:53:05,345 adding 'pysam/include/bcftools/filter.c.pysam.c' 2023-10-05T11:53:05,348 adding 'pysam/include/bcftools/filter.h' 2023-10-05T11:53:05,353 adding 'pysam/include/bcftools/gff.c' 2023-10-05T11:53:05,358 adding 'pysam/include/bcftools/gff.c.pysam.c' 2023-10-05T11:53:05,360 adding 'pysam/include/bcftools/gff.h' 2023-10-05T11:53:05,362 adding 'pysam/include/bcftools/gvcf.c' 2023-10-05T11:53:05,364 adding 'pysam/include/bcftools/gvcf.c.pysam.c' 2023-10-05T11:53:05,365 adding 'pysam/include/bcftools/gvcf.h' 2023-10-05T11:53:05,367 adding 'pysam/include/bcftools/hclust.c' 2023-10-05T11:53:05,370 adding 'pysam/include/bcftools/hclust.c.pysam.c' 2023-10-05T11:53:05,371 adding 'pysam/include/bcftools/hclust.h' 2023-10-05T11:53:05,373 adding 'pysam/include/bcftools/hex.h' 2023-10-05T11:53:05,374 adding 'pysam/include/bcftools/khash_str2str.h' 2023-10-05T11:53:05,376 adding 'pysam/include/bcftools/kheap.h' 2023-10-05T11:53:05,378 adding 'pysam/include/bcftools/kmin.c' 2023-10-05T11:53:05,379 adding 'pysam/include/bcftools/kmin.c.pysam.c' 2023-10-05T11:53:05,381 adding 'pysam/include/bcftools/kmin.h' 2023-10-05T11:53:05,383 adding 'pysam/include/bcftools/main.c' 2023-10-05T11:53:05,385 adding 'pysam/include/bcftools/main.c.pysam.c' 2023-10-05T11:53:05,392 adding 'pysam/include/bcftools/mcall.c' 2023-10-05T11:53:05,400 adding 'pysam/include/bcftools/mcall.c.pysam.c' 2023-10-05T11:53:05,408 adding 'pysam/include/bcftools/mpileup.c' 2023-10-05T11:53:05,417 adding 'pysam/include/bcftools/mpileup.c.pysam.c' 2023-10-05T11:53:05,421 adding 'pysam/include/bcftools/mw.h' 2023-10-05T11:53:05,423 adding 'pysam/include/bcftools/ploidy.c' 2023-10-05T11:53:05,425 adding 'pysam/include/bcftools/ploidy.c.pysam.c' 2023-10-05T11:53:05,427 adding 'pysam/include/bcftools/ploidy.h' 2023-10-05T11:53:05,430 adding 'pysam/include/bcftools/prob1.c' 2023-10-05T11:53:05,433 adding 'pysam/include/bcftools/prob1.c.pysam.c' 2023-10-05T11:53:05,434 adding 'pysam/include/bcftools/prob1.h' 2023-10-05T11:53:05,436 adding 'pysam/include/bcftools/rbuf.h' 2023-10-05T11:53:05,440 adding 'pysam/include/bcftools/read_consensus.c' 2023-10-05T11:53:05,444 adding 'pysam/include/bcftools/read_consensus.c.pysam.c' 2023-10-05T11:53:05,445 adding 'pysam/include/bcftools/read_consensus.h' 2023-10-05T11:53:05,448 adding 'pysam/include/bcftools/regidx.c' 2023-10-05T11:53:05,451 adding 'pysam/include/bcftools/regidx.c.pysam.c' 2023-10-05T11:53:05,452 adding 'pysam/include/bcftools/regidx.h' 2023-10-05T11:53:05,456 adding 'pysam/include/bcftools/reheader.c' 2023-10-05T11:53:05,460 adding 'pysam/include/bcftools/reheader.c.pysam.c' 2023-10-05T11:53:05,462 adding 'pysam/include/bcftools/smpl_ilist.c' 2023-10-05T11:53:05,463 adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' 2023-10-05T11:53:05,465 adding 'pysam/include/bcftools/smpl_ilist.h' 2023-10-05T11:53:05,467 adding 'pysam/include/bcftools/str_finder.c' 2023-10-05T11:53:05,469 adding 'pysam/include/bcftools/str_finder.c.pysam.c' 2023-10-05T11:53:05,470 adding 'pysam/include/bcftools/str_finder.h' 2023-10-05T11:53:05,472 adding 'pysam/include/bcftools/tabix.c' 2023-10-05T11:53:05,473 adding 'pysam/include/bcftools/tabix.c.pysam.c' 2023-10-05T11:53:05,475 adding 'pysam/include/bcftools/tsv2vcf.c' 2023-10-05T11:53:05,476 adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' 2023-10-05T11:53:05,478 adding 'pysam/include/bcftools/tsv2vcf.h' 2023-10-05T11:53:05,481 adding 'pysam/include/bcftools/utlist.h' 2023-10-05T11:53:05,484 adding 'pysam/include/bcftools/variantkey.h' 2023-10-05T11:53:05,499 adding 'pysam/include/bcftools/vcfannotate.c' 2023-10-05T11:53:05,517 adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' 2023-10-05T11:53:05,521 adding 'pysam/include/bcftools/vcfbuf.c' 2023-10-05T11:53:05,524 adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' 2023-10-05T11:53:05,525 adding 'pysam/include/bcftools/vcfbuf.h' 2023-10-05T11:53:05,531 adding 'pysam/include/bcftools/vcfcall.c' 2023-10-05T11:53:05,537 adding 'pysam/include/bcftools/vcfcall.c.pysam.c' 2023-10-05T11:53:05,543 adding 'pysam/include/bcftools/vcfcnv.c' 2023-10-05T11:53:05,549 adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' 2023-10-05T11:53:05,555 adding 'pysam/include/bcftools/vcfconcat.c' 2023-10-05T11:53:05,561 adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' 2023-10-05T11:53:05,568 adding 'pysam/include/bcftools/vcfconvert.c' 2023-10-05T11:53:05,576 adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' 2023-10-05T11:53:05,580 adding 'pysam/include/bcftools/vcffilter.c' 2023-10-05T11:53:05,584 adding 'pysam/include/bcftools/vcffilter.c.pysam.c' 2023-10-05T11:53:05,590 adding 'pysam/include/bcftools/vcfgtcheck.c' 2023-10-05T11:53:05,595 adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' 2023-10-05T11:53:05,597 adding 'pysam/include/bcftools/vcfhead.c' 2023-10-05T11:53:05,599 adding 'pysam/include/bcftools/vcfhead.c.pysam.c' 2023-10-05T11:53:05,601 adding 'pysam/include/bcftools/vcfindex.c' 2023-10-05T11:53:05,603 adding 'pysam/include/bcftools/vcfindex.c.pysam.c' 2023-10-05T11:53:05,607 adding 'pysam/include/bcftools/vcfisec.c' 2023-10-05T11:53:05,610 adding 'pysam/include/bcftools/vcfisec.c.pysam.c' 2023-10-05T11:53:05,626 adding 'pysam/include/bcftools/vcfmerge.c' 2023-10-05T11:53:05,642 adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' 2023-10-05T11:53:05,654 adding 'pysam/include/bcftools/vcfnorm.c' 2023-10-05T11:53:05,664 adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' 2023-10-05T11:53:05,668 adding 'pysam/include/bcftools/vcfplugin.c' 2023-10-05T11:53:05,672 adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' 2023-10-05T11:53:05,675 adding 'pysam/include/bcftools/vcfquery.c' 2023-10-05T11:53:05,677 adding 'pysam/include/bcftools/vcfquery.c.pysam.c' 2023-10-05T11:53:05,683 adding 'pysam/include/bcftools/vcfroh.c' 2023-10-05T11:53:05,688 adding 'pysam/include/bcftools/vcfroh.c.pysam.c' 2023-10-05T11:53:05,692 adding 'pysam/include/bcftools/vcfsom.c' 2023-10-05T11:53:05,695 adding 'pysam/include/bcftools/vcfsom.c.pysam.c' 2023-10-05T11:53:05,697 adding 'pysam/include/bcftools/vcfsort.c' 2023-10-05T11:53:05,700 adding 'pysam/include/bcftools/vcfsort.c.pysam.c' 2023-10-05T11:53:05,708 adding 'pysam/include/bcftools/vcfstats.c' 2023-10-05T11:53:05,718 adding 'pysam/include/bcftools/vcfstats.c.pysam.c' 2023-10-05T11:53:05,722 adding 'pysam/include/bcftools/vcfview.c' 2023-10-05T11:53:05,727 adding 'pysam/include/bcftools/vcfview.c.pysam.c' 2023-10-05T11:53:05,728 adding 'pysam/include/bcftools/vcmp.c' 2023-10-05T11:53:05,730 adding 'pysam/include/bcftools/vcmp.c.pysam.c' 2023-10-05T11:53:05,731 adding 'pysam/include/bcftools/vcmp.h' 2023-10-05T11:53:05,733 adding 'pysam/include/bcftools/version.c' 2023-10-05T11:53:05,734 adding 'pysam/include/bcftools/version.c.pysam.c' 2023-10-05T11:53:05,736 adding 'pysam/include/bcftools/version.sh' 2023-10-05T11:53:05,739 adding 'pysam/include/htslib/LICENSE' 2023-10-05T11:53:05,743 adding 'pysam/include/htslib/Makefile' 2023-10-05T11:53:05,745 adding 'pysam/include/htslib/README' 2023-10-05T11:53:05,748 adding 'pysam/include/htslib/bcf_sr_sort.c' 2023-10-05T11:53:05,750 adding 'pysam/include/htslib/bcf_sr_sort.h' 2023-10-05T11:53:05,759 adding 'pysam/include/htslib/bgzf.c' 2023-10-05T11:53:05,762 adding 'pysam/include/htslib/bgzip.c' 2023-10-05T11:53:05,764 adding 'pysam/include/htslib/builddir_vars.mk.in' 2023-10-05T11:53:05,765 adding 'pysam/include/htslib/config.h' 2023-10-05T11:53:05,766 adding 'pysam/include/htslib/config.h.in' 2023-10-05T11:53:05,768 adding 'pysam/include/htslib/config.mk.in' 2023-10-05T11:53:05,790 adding 'pysam/include/htslib/configure' 2023-10-05T11:53:05,794 adding 'pysam/include/htslib/configure.ac' 2023-10-05T11:53:05,796 adding 'pysam/include/htslib/errmod.c' 2023-10-05T11:53:05,799 adding 'pysam/include/htslib/faidx.c' 2023-10-05T11:53:05,808 adding 'pysam/include/htslib/header.c' 2023-10-05T11:53:05,811 adding 'pysam/include/htslib/header.h' 2023-10-05T11:53:05,816 adding 'pysam/include/htslib/hfile.c' 2023-10-05T11:53:05,818 adding 'pysam/include/htslib/hfile_gcs.c' 2023-10-05T11:53:05,820 adding 'pysam/include/htslib/hfile_internal.h' 2023-10-05T11:53:05,825 adding 'pysam/include/htslib/hfile_libcurl.c' 2023-10-05T11:53:05,830 adding 'pysam/include/htslib/hfile_s3.c' 2023-10-05T11:53:05,833 adding 'pysam/include/htslib/hfile_s3_write.c' 2023-10-05T11:53:05,852 adding 'pysam/include/htslib/hts.c' 2023-10-05T11:53:05,856 adding 'pysam/include/htslib/hts_expr.c' 2023-10-05T11:53:05,858 adding 'pysam/include/htslib/hts_internal.h' 2023-10-05T11:53:05,859 adding 'pysam/include/htslib/hts_os.c' 2023-10-05T11:53:05,861 adding 'pysam/include/htslib/hts_time_funcs.h' 2023-10-05T11:53:05,862 adding 'pysam/include/htslib/htscodecs_bundled.mk' 2023-10-05T11:53:05,864 adding 'pysam/include/htslib/htscodecs_external.mk' 2023-10-05T11:53:05,866 adding 'pysam/include/htslib/htsfile.c' 2023-10-05T11:53:05,867 adding 'pysam/include/htslib/htslib.mk' 2023-10-05T11:53:05,868 adding 'pysam/include/htslib/htslib.pc.in' 2023-10-05T11:53:05,870 adding 'pysam/include/htslib/htslib_vars.mk' 2023-10-05T11:53:05,872 adding 'pysam/include/htslib/kfunc.c' 2023-10-05T11:53:05,874 adding 'pysam/include/htslib/kstring.c' 2023-10-05T11:53:05,876 adding 'pysam/include/htslib/md5.c' 2023-10-05T11:53:05,877 adding 'pysam/include/htslib/multipart.c' 2023-10-05T11:53:05,879 adding 'pysam/include/htslib/plugin.c' 2023-10-05T11:53:05,882 adding 'pysam/include/htslib/probaln.c' 2023-10-05T11:53:05,884 adding 'pysam/include/htslib/realn.c' 2023-10-05T11:53:05,886 adding 'pysam/include/htslib/regidx.c' 2023-10-05T11:53:05,888 adding 'pysam/include/htslib/region.c' 2023-10-05T11:53:05,910 adding 'pysam/include/htslib/sam.c' 2023-10-05T11:53:05,913 adding 'pysam/include/htslib/sam_internal.h' 2023-10-05T11:53:05,916 adding 'pysam/include/htslib/sam_mods.c' 2023-10-05T11:53:05,922 adding 'pysam/include/htslib/synced_bcf_reader.c' 2023-10-05T11:53:05,925 adding 'pysam/include/htslib/tabix.c' 2023-10-05T11:53:05,928 adding 'pysam/include/htslib/tbx.c' 2023-10-05T11:53:05,930 adding 'pysam/include/htslib/textutils.c' 2023-10-05T11:53:05,932 adding 'pysam/include/htslib/textutils_internal.h' 2023-10-05T11:53:05,938 adding 'pysam/include/htslib/thread_pool.c' 2023-10-05T11:53:05,940 adding 'pysam/include/htslib/thread_pool_internal.h' 2023-10-05T11:53:05,960 adding 'pysam/include/htslib/vcf.c' 2023-10-05T11:53:05,963 adding 'pysam/include/htslib/vcf_sweep.c' 2023-10-05T11:53:05,966 adding 'pysam/include/htslib/vcfutils.c' 2023-10-05T11:53:05,967 adding 'pysam/include/htslib/version.sh' 2023-10-05T11:53:05,969 adding 'pysam/include/htslib/cram/cram.h' 2023-10-05T11:53:05,981 adding 'pysam/include/htslib/cram/cram_codecs.c' 2023-10-05T11:53:05,984 adding 'pysam/include/htslib/cram/cram_codecs.h' 2023-10-05T11:53:05,996 adding 'pysam/include/htslib/cram/cram_decode.c' 2023-10-05T11:53:05,998 adding 'pysam/include/htslib/cram/cram_decode.h' 2023-10-05T11:53:06,012 adding 'pysam/include/htslib/cram/cram_encode.c' 2023-10-05T11:53:06,015 adding 'pysam/include/htslib/cram/cram_encode.h' 2023-10-05T11:53:06,018 adding 'pysam/include/htslib/cram/cram_external.c' 2023-10-05T11:53:06,021 adding 'pysam/include/htslib/cram/cram_index.c' 2023-10-05T11:53:06,023 adding 'pysam/include/htslib/cram/cram_index.h' 2023-10-05T11:53:06,042 adding 'pysam/include/htslib/cram/cram_io.c' 2023-10-05T11:53:06,046 adding 'pysam/include/htslib/cram/cram_io.h' 2023-10-05T11:53:06,047 adding 'pysam/include/htslib/cram/cram_samtools.h' 2023-10-05T11:53:06,049 adding 'pysam/include/htslib/cram/cram_stats.c' 2023-10-05T11:53:06,050 adding 'pysam/include/htslib/cram/cram_stats.h' 2023-10-05T11:53:06,054 adding 'pysam/include/htslib/cram/cram_structs.h' 2023-10-05T11:53:06,057 adding 'pysam/include/htslib/cram/mFILE.c' 2023-10-05T11:53:06,058 adding 'pysam/include/htslib/cram/mFILE.h' 2023-10-05T11:53:06,060 adding 'pysam/include/htslib/cram/misc.h' 2023-10-05T11:53:06,062 adding 'pysam/include/htslib/cram/open_trace_file.c' 2023-10-05T11:53:06,064 adding 'pysam/include/htslib/cram/open_trace_file.h' 2023-10-05T11:53:06,065 adding 'pysam/include/htslib/cram/os.h' 2023-10-05T11:53:06,067 adding 'pysam/include/htslib/cram/pooled_alloc.c' 2023-10-05T11:53:06,068 adding 'pysam/include/htslib/cram/pooled_alloc.h' 2023-10-05T11:53:06,070 adding 'pysam/include/htslib/cram/string_alloc.c' 2023-10-05T11:53:06,071 adding 'pysam/include/htslib/cram/string_alloc.h' 2023-10-05T11:53:06,077 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' 2023-10-05T11:53:06,078 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' 2023-10-05T11:53:06,080 adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' 2023-10-05T11:53:06,081 adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' 2023-10-05T11:53:06,087 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' 2023-10-05T11:53:06,089 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' 2023-10-05T11:53:06,091 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' 2023-10-05T11:53:06,092 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' 2023-10-05T11:53:06,093 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' 2023-10-05T11:53:06,095 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' 2023-10-05T11:53:06,097 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' 2023-10-05T11:53:06,099 adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' 2023-10-05T11:53:06,101 adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' 2023-10-05T11:53:06,103 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' 2023-10-05T11:53:06,106 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' 2023-10-05T11:53:06,108 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' 2023-10-05T11:53:06,111 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' 2023-10-05T11:53:06,113 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' 2023-10-05T11:53:06,115 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' 2023-10-05T11:53:06,120 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' 2023-10-05T11:53:06,124 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' 2023-10-05T11:53:06,131 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' 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'pysam/include/htslib/htscodecs/htscodecs/varint2.h' 2023-10-05T11:53:06,168 adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' 2023-10-05T11:53:06,171 adding 'pysam/include/htslib/htslib/bgzf.h' 2023-10-05T11:53:06,174 adding 'pysam/include/htslib/htslib/cram.h' 2023-10-05T11:53:06,177 adding 'pysam/include/htslib/htslib/faidx.h' 2023-10-05T11:53:06,179 adding 'pysam/include/htslib/htslib/hfile.h' 2023-10-05T11:53:06,187 adding 'pysam/include/htslib/htslib/hts.h' 2023-10-05T11:53:06,189 adding 'pysam/include/htslib/htslib/hts_defs.h' 2023-10-05T11:53:06,191 adding 'pysam/include/htslib/htslib/hts_endian.h' 2023-10-05T11:53:06,193 adding 'pysam/include/htslib/htslib/hts_expr.h' 2023-10-05T11:53:06,194 adding 'pysam/include/htslib/htslib/hts_log.h' 2023-10-05T11:53:06,195 adding 'pysam/include/htslib/htslib/hts_os.h' 2023-10-05T11:53:06,197 adding 'pysam/include/htslib/htslib/kbitset.h' 2023-10-05T11:53:06,199 adding 'pysam/include/htslib/htslib/kfunc.h' 2023-10-05T11:53:06,201 adding 'pysam/include/htslib/htslib/khash.h' 2023-10-05T11:53:06,203 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2023-10-05T11:53:06,204 adding 'pysam/include/htslib/htslib/klist.h' 2023-10-05T11:53:06,206 adding 'pysam/include/htslib/htslib/knetfile.h' 2023-10-05T11:53:06,207 adding 'pysam/include/htslib/htslib/kroundup.h' 2023-10-05T11:53:06,209 adding 'pysam/include/htslib/htslib/kseq.h' 2023-10-05T11:53:06,211 adding 'pysam/include/htslib/htslib/ksort.h' 2023-10-05T11:53:06,213 adding 'pysam/include/htslib/htslib/kstring.h' 2023-10-05T11:53:06,215 adding 'pysam/include/htslib/htslib/regidx.h' 2023-10-05T11:53:06,226 adding 'pysam/include/htslib/htslib/sam.h' 2023-10-05T11:53:06,230 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2023-10-05T11:53:06,231 adding 'pysam/include/htslib/htslib/tbx.h' 2023-10-05T11:53:06,234 adding 'pysam/include/htslib/htslib/thread_pool.h' 2023-10-05T11:53:06,242 adding 'pysam/include/htslib/htslib/vcf.h' 2023-10-05T11:53:06,244 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2023-10-05T11:53:06,246 adding 'pysam/include/htslib/htslib/vcfutils.h' 2023-10-05T11:53:06,248 adding 'pysam/include/htslib/m4/hts_check_compile_flags_needed.m4' 2023-10-05T11:53:06,249 adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' 2023-10-05T11:53:06,251 adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' 2023-10-05T11:53:06,253 adding 'pysam/include/htslib/m4/pkg.m4' 2023-10-05T11:53:06,255 adding 'pysam/include/htslib/os/lzma_stub.h' 2023-10-05T11:53:06,256 adding 'pysam/include/htslib/os/rand.c' 2023-10-05T11:53:06,260 adding 'pysam/include/samtools/LICENSE' 2023-10-05T11:53:06,261 adding 'pysam/include/samtools/README' 2023-10-05T11:53:06,269 adding 'pysam/include/samtools/amplicon_stats.c' 2023-10-05T11:53:06,276 adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' 2023-10-05T11:53:06,279 adding 'pysam/include/samtools/bam.c' 2023-10-05T11:53:06,281 adding 'pysam/include/samtools/bam.c.pysam.c' 2023-10-05T11:53:06,282 adding 'pysam/include/samtools/bam.h' 2023-10-05T11:53:06,286 adding 'pysam/include/samtools/bam2depth.c' 2023-10-05T11:53:06,290 adding 'pysam/include/samtools/bam2depth.c.pysam.c' 2023-10-05T11:53:06,293 adding 'pysam/include/samtools/bam_addrprg.c' 2023-10-05T11:53:06,295 adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' 2023-10-05T11:53:06,299 adding 'pysam/include/samtools/bam_ampliconclip.c' 2023-10-05T11:53:06,303 adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' 2023-10-05T11:53:06,305 adding 'pysam/include/samtools/bam_ampliconclip.h' 2023-10-05T11:53:06,306 adding 'pysam/include/samtools/bam_aux.c' 2023-10-05T11:53:06,307 adding 'pysam/include/samtools/bam_aux.c.pysam.c' 2023-10-05T11:53:06,310 adding 'pysam/include/samtools/bam_cat.c' 2023-10-05T11:53:06,313 adding 'pysam/include/samtools/bam_cat.c.pysam.c' 2023-10-05T11:53:06,314 adding 'pysam/include/samtools/bam_color.c' 2023-10-05T11:53:06,316 adding 'pysam/include/samtools/bam_color.c.pysam.c' 2023-10-05T11:53:06,327 adding 'pysam/include/samtools/bam_consensus.c' 2023-10-05T11:53:06,340 adding 'pysam/include/samtools/bam_consensus.c.pysam.c' 2023-10-05T11:53:06,345 adding 'pysam/include/samtools/bam_fastq.c' 2023-10-05T11:53:06,349 adding 'pysam/include/samtools/bam_fastq.c.pysam.c' 2023-10-05T11:53:06,351 adding 'pysam/include/samtools/bam_flags.c' 2023-10-05T11:53:06,352 adding 'pysam/include/samtools/bam_flags.c.pysam.c' 2023-10-05T11:53:06,355 adding 'pysam/include/samtools/bam_import.c' 2023-10-05T11:53:06,357 adding 'pysam/include/samtools/bam_import.c.pysam.c' 2023-10-05T11:53:06,359 adding 'pysam/include/samtools/bam_index.c' 2023-10-05T11:53:06,361 adding 'pysam/include/samtools/bam_index.c.pysam.c' 2023-10-05T11:53:06,363 adding 'pysam/include/samtools/bam_lpileup.c' 2023-10-05T11:53:06,365 adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' 2023-10-05T11:53:06,366 adding 'pysam/include/samtools/bam_lpileup.h' 2023-10-05T11:53:06,375 adding 'pysam/include/samtools/bam_markdup.c' 2023-10-05T11:53:06,384 adding 'pysam/include/samtools/bam_markdup.c.pysam.c' 2023-10-05T11:53:06,388 adding 'pysam/include/samtools/bam_mate.c' 2023-10-05T11:53:06,391 adding 'pysam/include/samtools/bam_mate.c.pysam.c' 2023-10-05T11:53:06,394 adding 'pysam/include/samtools/bam_md.c' 2023-10-05T11:53:06,397 adding 'pysam/include/samtools/bam_md.c.pysam.c' 2023-10-05T11:53:06,398 adding 'pysam/include/samtools/bam_plbuf.c' 2023-10-05T11:53:06,400 adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' 2023-10-05T11:53:06,401 adding 'pysam/include/samtools/bam_plbuf.h' 2023-10-05T11:53:06,407 adding 'pysam/include/samtools/bam_plcmd.c' 2023-10-05T11:53:06,412 adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' 2023-10-05T11:53:06,414 adding 'pysam/include/samtools/bam_quickcheck.c' 2023-10-05T11:53:06,416 adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' 2023-10-05T11:53:06,419 adding 'pysam/include/samtools/bam_reheader.c' 2023-10-05T11:53:06,422 adding 'pysam/include/samtools/bam_reheader.c.pysam.c' 2023-10-05T11:53:06,424 adding 'pysam/include/samtools/bam_rmdup.c' 2023-10-05T11:53:06,426 adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' 2023-10-05T11:53:06,427 adding 'pysam/include/samtools/bam_rmdupse.c' 2023-10-05T11:53:06,429 adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' 2023-10-05T11:53:06,431 adding 'pysam/include/samtools/bam_samples.c' 2023-10-05T11:53:06,433 adding 'pysam/include/samtools/bam_samples.c.pysam.c' 2023-10-05T11:53:06,449 adding 'pysam/include/samtools/bam_sort.c' 2023-10-05T11:53:06,465 adding 'pysam/include/samtools/bam_sort.c.pysam.c' 2023-10-05T11:53:06,469 adding 'pysam/include/samtools/bam_split.c' 2023-10-05T11:53:06,472 adding 'pysam/include/samtools/bam_split.c.pysam.c' 2023-10-05T11:53:06,474 adding 'pysam/include/samtools/bam_stat.c' 2023-10-05T11:53:06,476 adding 'pysam/include/samtools/bam_stat.c.pysam.c' 2023-10-05T11:53:06,479 adding 'pysam/include/samtools/bamshuf.c' 2023-10-05T11:53:06,482 adding 'pysam/include/samtools/bamshuf.c.pysam.c' 2023-10-05T11:53:06,484 adding 'pysam/include/samtools/bamtk.c' 2023-10-05T11:53:06,486 adding 'pysam/include/samtools/bamtk.c.pysam.c' 2023-10-05T11:53:06,488 adding 'pysam/include/samtools/bedcov.c' 2023-10-05T11:53:06,490 adding 'pysam/include/samtools/bedcov.c.pysam.c' 2023-10-05T11:53:06,493 adding 'pysam/include/samtools/bedidx.c' 2023-10-05T11:53:06,496 adding 'pysam/include/samtools/bedidx.c.pysam.c' 2023-10-05T11:53:06,497 adding 'pysam/include/samtools/bedidx.h' 2023-10-05T11:53:06,498 adding 'pysam/include/samtools/config.h' 2023-10-05T11:53:06,501 adding 'pysam/include/samtools/consensus_pileup.c' 2023-10-05T11:53:06,503 adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' 2023-10-05T11:53:06,505 adding 'pysam/include/samtools/consensus_pileup.h' 2023-10-05T11:53:06,508 adding 'pysam/include/samtools/coverage.c' 2023-10-05T11:53:06,512 adding 'pysam/include/samtools/coverage.c.pysam.c' 2023-10-05T11:53:06,515 adding 'pysam/include/samtools/cram_size.c' 2023-10-05T11:53:06,518 adding 'pysam/include/samtools/cram_size.c.pysam.c' 2023-10-05T11:53:06,520 adding 'pysam/include/samtools/cut_target.c' 2023-10-05T11:53:06,522 adding 'pysam/include/samtools/cut_target.c.pysam.c' 2023-10-05T11:53:06,523 adding 'pysam/include/samtools/dict.c' 2023-10-05T11:53:06,525 adding 'pysam/include/samtools/dict.c.pysam.c' 2023-10-05T11:53:06,527 adding 'pysam/include/samtools/faidx.c' 2023-10-05T11:53:06,530 adding 'pysam/include/samtools/faidx.c.pysam.c' 2023-10-05T11:53:06,533 adding 'pysam/include/samtools/padding.c' 2023-10-05T11:53:06,536 adding 'pysam/include/samtools/padding.c.pysam.c' 2023-10-05T11:53:06,540 adding 'pysam/include/samtools/phase.c' 2023-10-05T11:53:06,544 adding 'pysam/include/samtools/phase.c.pysam.c' 2023-10-05T11:53:06,547 adding 'pysam/include/samtools/reference.c' 2023-10-05T11:53:06,550 adding 'pysam/include/samtools/reference.c.pysam.c' 2023-10-05T11:53:06,553 adding 'pysam/include/samtools/reset.c' 2023-10-05T11:53:06,556 adding 'pysam/include/samtools/reset.c.pysam.c' 2023-10-05T11:53:06,558 adding 'pysam/include/samtools/sam_opts.c' 2023-10-05T11:53:06,559 adding 'pysam/include/samtools/sam_opts.c.pysam.c' 2023-10-05T11:53:06,561 adding 'pysam/include/samtools/sam_opts.h' 2023-10-05T11:53:06,562 adding 'pysam/include/samtools/sam_utils.c' 2023-10-05T11:53:06,564 adding 'pysam/include/samtools/sam_utils.c.pysam.c' 2023-10-05T11:53:06,566 adding 'pysam/include/samtools/sam_utils.h' 2023-10-05T11:53:06,572 adding 'pysam/include/samtools/sam_view.c' 2023-10-05T11:53:06,579 adding 'pysam/include/samtools/sam_view.c.pysam.c' 2023-10-05T11:53:06,581 adding 'pysam/include/samtools/sample.c' 2023-10-05T11:53:06,583 adding 'pysam/include/samtools/sample.c.pysam.c' 2023-10-05T11:53:06,584 adding 'pysam/include/samtools/sample.h' 2023-10-05T11:53:06,585 adding 'pysam/include/samtools/samtools.h' 2023-10-05T11:53:06,587 adding 'pysam/include/samtools/samtools.pysam.c' 2023-10-05T11:53:06,588 adding 'pysam/include/samtools/samtools.pysam.h' 2023-10-05T11:53:06,590 adding 'pysam/include/samtools/splaysort.h' 2023-10-05T11:53:06,601 adding 'pysam/include/samtools/stats.c' 2023-10-05T11:53:06,613 adding 'pysam/include/samtools/stats.c.pysam.c' 2023-10-05T11:53:06,616 adding 'pysam/include/samtools/stats_isize.c' 2023-10-05T11:53:06,618 adding 'pysam/include/samtools/stats_isize.c.pysam.c' 2023-10-05T11:53:06,619 adding 'pysam/include/samtools/stats_isize.h' 2023-10-05T11:53:06,621 adding 'pysam/include/samtools/tmp_file.c' 2023-10-05T11:53:06,624 adding 'pysam/include/samtools/tmp_file.c.pysam.c' 2023-10-05T11:53:06,625 adding 'pysam/include/samtools/tmp_file.h' 2023-10-05T11:53:06,627 adding 'pysam/include/samtools/version.sh' 2023-10-05T11:53:06,629 adding 'pysam/include/samtools/lz4/LICENSE' 2023-10-05T11:53:06,635 adding 'pysam/include/samtools/lz4/lz4.c' 2023-10-05T11:53:06,641 adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' 2023-10-05T11:53:06,645 adding 'pysam/include/samtools/lz4/lz4.h' 2023-10-05T11:53:06,647 adding 'pysam-0.22.0.dist-info/AUTHORS' 2023-10-05T11:53:06,648 adding 'pysam-0.22.0.dist-info/COPYING' 2023-10-05T11:53:06,649 adding 'pysam-0.22.0.dist-info/METADATA' 2023-10-05T11:53:06,650 adding 'pysam-0.22.0.dist-info/WHEEL' 2023-10-05T11:53:06,651 adding 'pysam-0.22.0.dist-info/top_level.txt' 2023-10-05T11:53:06,659 adding 'pysam-0.22.0.dist-info/RECORD' 2023-10-05T11:53:06,849 removing build/bdist.linux-armv7l/wheel 2023-10-05T11:53:07,954 Building wheel for pysam (pyproject.toml): finished with status 'done' 2023-10-05T11:53:08,374 Created wheel for pysam: filename=pysam-0.22.0-cp311-cp311-linux_armv7l.whl size=17842953 sha256=5a4512ae0b78c15a4e6cdab0dbe74604e8dcc7dea326c81d676e6c5c2a8df26c 2023-10-05T11:53:08,375 Stored in directory: /tmp/pip-ephem-wheel-cache-40pxfriz/wheels/b5/3f/9f/d7ec47be401b18d1f193abccb63542ebc60b2bbba0a28d1ac1 2023-10-05T11:53:08,406 Successfully built pysam 2023-10-05T11:53:08,829 Removed build tracker: '/tmp/pip-build-tracker-8bhqubhe'