2023-10-05T14:34:58,683 Created temporary directory: /tmp/pip-build-tracker-yr7up390 2023-10-05T14:34:58,685 Initialized build tracking at /tmp/pip-build-tracker-yr7up390 2023-10-05T14:34:58,685 Created build tracker: /tmp/pip-build-tracker-yr7up390 2023-10-05T14:34:58,685 Entered build tracker: /tmp/pip-build-tracker-yr7up390 2023-10-05T14:34:58,685 Created temporary directory: /tmp/pip-wheel-78jv9a1e 2023-10-05T14:34:58,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-5f2o6xid 2023-10-05T14:34:58,717 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T14:34:58,721 2 location(s) to search for versions of pysam: 2023-10-05T14:34:58,721 * https://pypi.org/simple/pysam/ 2023-10-05T14:34:58,721 * https://www.piwheels.org/simple/pysam/ 2023-10-05T14:34:58,721 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2023-10-05T14:34:58,722 Getting page https://pypi.org/simple/pysam/ 2023-10-05T14:34:58,723 Found index url https://pypi.org/simple/ 2023-10-05T14:34:58,779 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2023-10-05T14:34:58,827 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2023-10-05T14:34:58,827 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2023-10-05T14:34:58,828 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2023-10-05T14:34:58,828 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2023-10-05T14:34:58,828 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2023-10-05T14:34:58,829 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2023-10-05T14:34:58,829 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2023-10-05T14:34:58,829 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2023-10-05T14:34:58,829 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2023-10-05T14:34:58,830 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2023-10-05T14:34:58,830 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2023-10-05T14:34:58,830 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2023-10-05T14:34:58,831 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2023-10-05T14:34:58,831 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2023-10-05T14:34:58,831 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2023-10-05T14:34:58,831 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2023-10-05T14:34:58,832 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2023-10-05T14:34:58,832 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,832 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,833 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,833 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,833 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,834 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2023-10-05T14:34:58,834 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,834 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,835 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,835 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,835 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,835 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2023-10-05T14:34:58,836 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,836 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,836 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,837 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,837 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,837 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2023-10-05T14:34:58,838 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2023-10-05T14:34:58,838 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,838 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,839 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,839 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,839 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,839 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2023-10-05T14:34:58,840 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,840 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,840 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,841 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,841 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,841 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2023-10-05T14:34:58,842 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,842 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,842 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,843 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,843 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,843 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2023-10-05T14:34:58,844 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,844 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,844 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,844 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,845 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,845 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2023-10-05T14:34:58,845 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,846 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,846 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,846 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,847 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,847 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2023-10-05T14:34:58,847 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,847 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,848 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,848 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,848 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,849 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2023-10-05T14:34:58,849 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,849 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,850 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,850 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,850 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,850 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2023-10-05T14:34:58,851 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,851 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,851 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,852 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,852 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,852 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2023-10-05T14:34:58,853 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,853 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,853 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,853 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,854 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,854 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,854 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2023-10-05T14:34:58,855 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,855 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,855 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,856 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,856 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,856 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,856 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2023-10-05T14:34:58,857 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2023-10-05T14:34:58,857 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,857 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,858 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,858 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,858 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,859 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,860 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,860 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,860 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,861 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,861 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,861 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,861 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,862 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,862 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2023-10-05T14:34:58,862 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,863 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,864 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,864 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2023-10-05T14:34:58,864 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,865 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,865 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,865 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,866 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,866 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,866 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2023-10-05T14:34:58,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,867 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,868 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,868 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,868 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,868 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,869 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,869 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,869 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,870 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,870 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2023-10-05T14:34:58,870 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,871 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,872 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,872 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,872 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,873 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,873 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,873 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,873 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,874 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,874 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,874 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,874 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2023-10-05T14:34:58,875 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,875 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,875 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,876 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,876 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,876 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,877 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,877 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,877 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,877 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,878 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,878 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,878 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,879 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,880 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,880 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,880 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,880 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2023-10-05T14:34:58,881 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,881 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,881 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,882 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,882 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,882 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,883 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,883 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,883 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,883 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,884 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,884 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,884 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,884 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,885 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,885 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,885 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,886 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,886 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,886 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,886 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2023-10-05T14:34:58,887 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,887 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,887 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,888 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,889 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,889 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,889 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,890 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,890 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,890 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,890 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,891 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,891 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,891 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,892 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,892 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,892 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2023-10-05T14:34:58,892 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2023-10-05T14:34:58,893 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,893 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,893 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,894 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ba/d9a85addaaceb6e64e07498aa2f49c34851c72e1c367e91b43b47a6cdd91/pysam-0.21.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,894 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/b8/25f28c27f0f002172d02be5f8c7f65d13ee4535193da7690b32e84f04e53/pysam-0.21.0-cp311-cp311-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,894 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/44/a7/efdfb962af008eb2f0425885a230a7dc288de1bb2f09dde3d938a2ee540a/pysam-0.21.0-cp311-cp311-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,894 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/e5/87/d973a869f38c8d0c85e9ec2b588963974506971508bc343b0618708b6ec1/pysam-0.21.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,897 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/2a/c03e854221f6987f1c03b833dd469b662ea80e5bc63597d171167d64b8a4/pysam-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,897 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/0a/3d683e7f753d55d55cd1074afe6b5c631efabd10167f37b45ba4b1208d7d/pysam-0.21.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,898 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/4f/92accd8e20473087805de5ec2ade5f206ad2e1de78d32ee59abc04645d3c/pysam-0.21.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,898 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7d/55/709217f47472dfaedb0e3fa9462dfdcdbe809e1ed84cc0de54b5d11842dc/pysam-0.21.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,899 Found link https://files.pythonhosted.org/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.21.0 2023-10-05T14:34:58,899 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/70/41/34c85c7f2f3ec59c587ac8081b7e3f0e0ff320751c8bc659e6bc61bed6c6/pysam-0.22.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/b8/6862b8696a443120fcb3b2d78c37d95fbbd5e55600d0d550e904cd39c780/pysam-0.22.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/ff/6dfad2ef9a7b08787decbeb31edce2b0290b55a92dc453be0f65f6b8ae67/pysam-0.22.0-cp310-cp310-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2d/77/fe7b3a44975bc433c2ff42879b94a726ca1afdb9128ab4b4bce3b851f5d9/pysam-0.22.0-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,900 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/47/fd93e5818d457db0e148256a0636e37869c333c28c348741237a6f87e57a/pysam-0.22.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,901 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/65/1b/d134976a1d42184f947053c191327a86ec058ba5415ab38b9465a6f61aa9/pysam-0.22.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,901 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/2f/a5b7fff11b35fdcf6002fb7e2de1184bcab203569cc3b9a15e86e6f7000d/pysam-0.22.0-cp311-cp311-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,901 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/33/3d3892efab21256011bc7ee8d9911787583b93cd45a6d9a07b27c98f8df0/pysam-0.22.0-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,902 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/0d/986ec7927390da172a0c26dca6e4c91ffaadcef866072d71bbd96b7de02f/pysam-0.22.0-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,902 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/b6/2f32f6a81d675276214ad4a36171766d0b86d774a6b7c69eed06aa0ecc34/pysam-0.22.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,902 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/67/ee/3229aa0a950ddfc604c6ae0937389891c6d84de78c158a52dcb7ca00c1b2/pysam-0.22.0-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,902 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/82/ce/c590243561ecc170d87ce2c16a83f0eb6ac61e31040a836ebb880366b4b6/pysam-0.22.0-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,903 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/6b/a83f29bb5232ab0b09f7a5314a10a152f7c13129dfc92c7bf79404afb26d/pysam-0.22.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,903 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/f0/aced6e6a796e39fb37f70fbb4a4b902c7ec18c6f536dbdcc47568fb09783/pysam-0.22.0-cp36-cp36m-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,903 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/02/85/7bda79182e0f68089517d4bc2a6f93f22c9d854dfdb47417def172cac12e/pysam-0.22.0-cp36-cp36m-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/5a/0d9876b74b16b104a88dc55b6aaa3d6aecb58075c364e5ea9da57e5c7d00/pysam-0.22.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/21/87/5994707b8a5e04d6be638d0302e7306ecfe9bf838447f8ed4d6db9580309/pysam-0.22.0-cp37-cp37m-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/78/ccb7b75d0d92705b6e7d2df1f2173fd8701d6190b19fa21595643e18137f/pysam-0.22.0-cp37-cp37m-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,904 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/70/01/a07656353c6c03422109c3c167e394547bd5904ac510a78b3627d797d9fa/pysam-0.22.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,905 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e2/85/fa4fb58cc087522f4fde880517e4bc10bae9409798cdecc351aa72bc1fac/pysam-0.22.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,905 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/86/cdc1abc047690e6a180f73cf0d9d0e9ce950b9a66b0a97881355229d30aa/pysam-0.22.0-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,905 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/d1/a2d1cebe6c4f3acaf973d1fedcf7bf29209a4a4e8d5a9f2b9c5b20a2bcad/pysam-0.22.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,905 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f0/50/15e41d454069eda14edf16f6b91831108e1b1a4a4b61cc88564823d72501/pysam-0.22.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,906 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/b2/ba623e0d5af8bb99f3db382f29170dbc239d3a0bde0736ffd8a877bfb3b0/pysam-0.22.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,906 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/f6/03530dacb2879bf21d43efcabb1296c1bb28743fc9cfb9353f00277281b3/pysam-0.22.0-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,906 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/af/de/f7e57c109e4389e2b36c387588ff685c2379af750400d33d9ff60896c1b8/pysam-0.22.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:58,907 Found link https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.22.0 2023-10-05T14:34:58,908 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2023-10-05T14:34:58,908 Getting page https://www.piwheels.org/simple/pysam/ 2023-10-05T14:34:58,909 Found index url https://www.piwheels.org/simple/ 2023-10-05T14:34:58,988 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2023-10-05T14:34:59,030 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp37-cp37m-linux_armv7l.whl#sha256=4ce671b9486dca0a5151703c3b70aba44b745ac8a49205759b241a1a3906b729 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,030 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp37-cp37m-linux_armv6l.whl#sha256=4ce671b9486dca0a5151703c3b70aba44b745ac8a49205759b241a1a3906b729 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,030 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp311-cp311-linux_armv7l.whl#sha256=5a4512ae0b78c15a4e6cdab0dbe74604e8dcc7dea326c81d676e6c5c2a8df26c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,031 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp311-cp311-linux_armv6l.whl#sha256=5a4512ae0b78c15a4e6cdab0dbe74604e8dcc7dea326c81d676e6c5c2a8df26c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,031 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv7l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,031 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv6l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,031 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv7l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,031 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp39-cp39-linux_armv6l.whl#sha256=c9e522129e90c8727fdf653d86d9dd8a1c770aaae42c25cabed1688ef323c1e5 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,032 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv7l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,032 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv6l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2023-10-05T14:34:59,032 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,032 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=02833470b689b5f0801b783b4d39663d1fd225749f8246f0e0e22c31894a30ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,032 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,033 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,033 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,033 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv6l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,033 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,033 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,034 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,034 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,034 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv7l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,034 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv6l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,034 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,035 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,035 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,035 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,035 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,035 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv7l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp39-cp39-linux_armv6l.whl#sha256=eaf2bc89169869052d491a0d13c93889b72d0f8eb53fa05805ac3f4dac239b59 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,036 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,037 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,037 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=d064a168685618a43e6bd8273d88d19ef40e89acc2276efda1d619185d149b5a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,037 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,037 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv6l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,037 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,038 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,038 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv6l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,038 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,038 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv7l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,038 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0.1-cp37-cp37m-linux_armv6l.whl#sha256=f6c36385a1dd01a86450694e529557dbcb2c25fd6b7e16faf219e0f4c5c4c3ee (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,039 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,039 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,039 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,040 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,040 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,041 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,041 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,041 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,041 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,041 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,042 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,043 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,043 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,043 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,043 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,043 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,044 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,045 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,045 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,045 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,045 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,045 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,046 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,046 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,046 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,046 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,046 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,047 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,048 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,048 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,048 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,048 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,048 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,049 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,049 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,049 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,050 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,050 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,050 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,050 Skipping link: No binaries permitted for pysam: 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2023-10-05T14:34:59,051 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,051 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,051 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,052 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,053 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,053 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,053 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,053 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,053 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,054 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,055 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,055 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,055 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,055 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,055 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,056 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,057 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,057 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,057 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,057 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,057 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,058 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,059 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,059 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,059 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,059 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,059 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,060 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,060 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,060 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,060 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,060 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,061 Skipping link: No binaries permitted for pysam: https://www.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2023-10-05T14:34:59,061 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2023-10-05T14:34:59,061 Skipping link: not a file: https://pypi.org/simple/pysam/ 2023-10-05T14:34:59,083 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2023-10-05T14:34:59,098 Collecting pysam==0.22.0 2023-10-05T14:34:59,101 Created temporary directory: /tmp/pip-unpack-_23a9myv 2023-10-05T14:34:59,145 Downloading pysam-0.22.0.tar.gz (4.6 MB) 2023-10-05T14:35:01,956 Added pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz to build tracker '/tmp/pip-build-tracker-yr7up390' 2023-10-05T14:35:01,961 Created temporary directory: /tmp/pip-build-env-x53mgy7t 2023-10-05T14:35:01,972 Installing build dependencies: started 2023-10-05T14:35:01,974 Running command pip subprocess to install build dependencies 2023-10-05T14:35:03,389 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-05T14:35:03,919 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T14:35:05,666 Collecting setuptools>=59.0 2023-10-05T14:35:05,782 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-05T14:35:07,452 Collecting Cython<4,>=0.29.12 2023-10-05T14:35:08,231 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB) 2023-10-05T14:35:12,083 Installing collected packages: setuptools, Cython 2023-10-05T14:35:19,252 Creating /tmp/pip-build-env-x53mgy7t/overlay/bin 2023-10-05T14:35:19,254 changing mode of /tmp/pip-build-env-x53mgy7t/overlay/bin/cygdb to 755 2023-10-05T14:35:19,256 changing mode of /tmp/pip-build-env-x53mgy7t/overlay/bin/cython to 755 2023-10-05T14:35:19,258 changing mode of /tmp/pip-build-env-x53mgy7t/overlay/bin/cythonize to 755 2023-10-05T14:35:19,279 Successfully installed Cython-3.0.2 setuptools-68.2.2 2023-10-05T14:35:19,807 Installing build dependencies: finished with status 'done' 2023-10-05T14:35:19,812 Getting requirements to build wheel: started 2023-10-05T14:35:19,813 Running command Getting requirements to build wheel 2023-10-05T14:35:20,321 # pysam: cython is available - using cythonize if necessary 2023-10-05T14:35:20,322 # pysam: htslib mode is shared 2023-10-05T14:35:20,322 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T14:35:20,322 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:20,323 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T14:35:20,323 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-10-05T14:35:20,642 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:20,915 checking whether the C compiler works... yes 2023-10-05T14:35:20,916 checking for C compiler default output file name... a.out 2023-10-05T14:35:21,084 checking for suffix of executables... 2023-10-05T14:35:21,284 checking whether we are cross compiling... no 2023-10-05T14:35:21,375 checking for suffix of object files... o 2023-10-05T14:35:21,475 checking whether we are using the GNU C compiler... yes 2023-10-05T14:35:21,582 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-10-05T14:35:21,744 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-10-05T14:35:21,747 checking for ranlib... ranlib 2023-10-05T14:35:21,756 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T14:35:21,815 checking for C compiler warning flags... unknown 2023-10-05T14:35:21,919 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-10-05T14:35:22,029 checking for egrep... /usr/bin/grep -E 2023-10-05T14:35:22,516 checking for ANSI C header files... yes 2023-10-05T14:35:22,637 checking for sys/types.h... yes 2023-10-05T14:35:22,773 checking for sys/stat.h... yes 2023-10-05T14:35:22,907 checking for stdlib.h... yes 2023-10-05T14:35:23,071 checking for string.h... yes 2023-10-05T14:35:23,221 checking for memory.h... yes 2023-10-05T14:35:23,396 checking for strings.h... yes 2023-10-05T14:35:23,540 checking for inttypes.h... yes 2023-10-05T14:35:23,683 checking for stdint.h... yes 2023-10-05T14:35:23,844 checking for unistd.h... yes 2023-10-05T14:35:24,021 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T14:35:24,227 checking C compiler flags needed for ssse3... none 2023-10-05T14:35:24,398 checking C compiler flags needed for popcnt... none 2023-10-05T14:35:24,574 checking C compiler flags needed for sse4.1... none 2023-10-05T14:35:24,759 checking C compiler flags needed for avx2... none 2023-10-05T14:35:26,059 checking C compiler flags needed for avx512f... none 2023-10-05T14:35:26,545 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T14:35:26,590 checking pkg-config is at least version 0.9.0... yes 2023-10-05T14:35:26,594 checking for special C compiler options needed for large files... no 2023-10-05T14:35:26,837 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T14:35:27,074 checking shared library type for unknown-Linux... plain .so 2023-10-05T14:35:27,191 checking whether the linker supports versioned symbols... no 2023-10-05T14:35:27,362 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T14:35:27,374 checking for stdlib.h... (cached) yes 2023-10-05T14:35:27,406 checking for unistd.h... (cached) yes 2023-10-05T14:35:27,638 checking for sys/param.h... yes 2023-10-05T14:35:27,828 checking for getpagesize... yes 2023-10-05T14:35:28,145 checking for working mmap... yes 2023-10-05T14:35:28,353 checking for gmtime_r... yes 2023-10-05T14:35:28,576 checking for fsync... yes 2023-10-05T14:35:28,780 checking for drand48... yes 2023-10-05T14:35:29,005 checking for srand48_deterministic... no 2023-10-05T14:35:29,195 checking whether fdatasync is declared... yes 2023-10-05T14:35:29,408 checking for fdatasync... yes 2023-10-05T14:35:29,804 checking for library containing log... -lm 2023-10-05T14:35:29,906 checking for zlib.h... yes 2023-10-05T14:35:30,112 checking for inflate in -lz... yes 2023-10-05T14:35:30,301 checking for library containing recv... none required 2023-10-05T14:35:30,389 checking for bzlib.h... yes 2023-10-05T14:35:30,571 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T14:35:30,758 checking for lzma.h... yes 2023-10-05T14:35:30,977 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T14:35:30,983 checking whether htscodecs files are present... yes 2023-10-05T14:35:31,065 checking for libdeflate.h... yes 2023-10-05T14:35:31,249 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T14:35:31,398 checking for curl/curl.h... yes 2023-10-05T14:35:31,804 checking for curl_easy_pause in -lcurl... yes 2023-10-05T14:35:32,016 checking for CCHmac... no 2023-10-05T14:35:32,594 checking for library containing HMAC... -lcrypto 2023-10-05T14:35:32,779 checking for library containing regcomp... none required 2023-10-05T14:35:32,848 configure: creating ./config.status 2023-10-05T14:35:33,177 config.status: creating config.mk 2023-10-05T14:35:33,222 config.status: creating htslib.pc.tmp 2023-10-05T14:35:33,281 config.status: creating config.h 2023-10-05T14:35:33,330 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T14:35:34,162 # pysam: htslib configure options: --enable-libcurl 2023-10-05T14:35:34,162 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T14:35:34,162 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T14:35:34,162 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T14:35:34,162 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T14:35:34,162 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T14:35:34,163 # pysam: htslib_config PLATFORM=default 2023-10-05T14:35:34,163 # pysam: config_option: ENABLE_GCS=1 2023-10-05T14:35:34,163 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T14:35:34,163 # pysam: config_option: ENABLE_S3=1 2023-10-05T14:35:34,163 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T14:35:34,163 # pysam: config_option: HAVE_HMAC=1 2023-10-05T14:35:34,163 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T14:35:34,164 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T14:35:34,164 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T14:35:34,164 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T14:35:34,164 # pysam: config_option: HAVE_MMAP=1 2023-10-05T14:35:34,164 running egg_info 2023-10-05T14:35:34,167 writing pysam.egg-info/PKG-INFO 2023-10-05T14:35:34,170 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-10-05T14:35:34,172 writing top-level names to pysam.egg-info/top_level.txt 2023-10-05T14:35:34,217 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T14:35:34,241 reading manifest template 'MANIFEST.in' 2023-10-05T14:35:34,242 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T14:35:34,243 warning: no files found matching 'THANKS' 2023-10-05T14:35:34,252 no previously-included directories found matching 'tests/' 2023-10-05T14:35:34,368 adding license file 'COPYING' 2023-10-05T14:35:34,369 adding license file 'AUTHORS' 2023-10-05T14:35:34,396 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T14:35:34,509 Getting requirements to build wheel: finished with status 'done' 2023-10-05T14:35:34,522 Installing backend dependencies: started 2023-10-05T14:35:34,523 Running command pip subprocess to install backend dependencies 2023-10-05T14:35:35,687 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-05T14:35:36,218 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T14:35:36,571 Collecting wheel 2023-10-05T14:35:36,589 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-05T14:35:37,925 Installing collected packages: wheel 2023-10-05T14:35:38,152 Creating /tmp/pip-build-env-x53mgy7t/normal/bin 2023-10-05T14:35:38,154 changing mode of /tmp/pip-build-env-x53mgy7t/normal/bin/wheel to 755 2023-10-05T14:35:38,166 Successfully installed wheel-0.41.2 2023-10-05T14:35:38,571 Installing backend dependencies: finished with status 'done' 2023-10-05T14:35:38,574 Created temporary directory: /tmp/pip-modern-metadata-l7e0gkb9 2023-10-05T14:35:38,793 Preparing metadata (pyproject.toml): started 2023-10-05T14:35:38,794 Running command Preparing metadata (pyproject.toml) 2023-10-05T14:35:39,347 # pysam: cython is available - using cythonize if necessary 2023-10-05T14:35:39,348 # pysam: htslib mode is shared 2023-10-05T14:35:39,348 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T14:35:39,348 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:39,348 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T14:35:39,349 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-10-05T14:35:39,663 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:39,921 checking whether the C compiler works... yes 2023-10-05T14:35:39,922 checking for C compiler default output file name... a.out 2023-10-05T14:35:40,087 checking for suffix of executables... 2023-10-05T14:35:40,280 checking whether we are cross compiling... no 2023-10-05T14:35:40,383 checking for suffix of object files... o 2023-10-05T14:35:40,495 checking whether we are using the GNU C compiler... yes 2023-10-05T14:35:40,602 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-10-05T14:35:40,736 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-10-05T14:35:40,740 checking for ranlib... ranlib 2023-10-05T14:35:40,751 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T14:35:40,809 checking for C compiler warning flags... unknown 2023-10-05T14:35:40,913 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-10-05T14:35:41,025 checking for egrep... /usr/bin/grep -E 2023-10-05T14:35:41,503 checking for ANSI C header files... yes 2023-10-05T14:35:41,620 checking for sys/types.h... yes 2023-10-05T14:35:41,754 checking for sys/stat.h... yes 2023-10-05T14:35:41,888 checking for stdlib.h... yes 2023-10-05T14:35:42,025 checking for string.h... yes 2023-10-05T14:35:42,170 checking for memory.h... yes 2023-10-05T14:35:42,371 checking for strings.h... yes 2023-10-05T14:35:42,512 checking for inttypes.h... yes 2023-10-05T14:35:42,657 checking for stdint.h... yes 2023-10-05T14:35:42,811 checking for unistd.h... yes 2023-10-05T14:35:42,980 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T14:35:43,186 checking C compiler flags needed for ssse3... none 2023-10-05T14:35:43,356 checking C compiler flags needed for popcnt... none 2023-10-05T14:35:43,524 checking C compiler flags needed for sse4.1... none 2023-10-05T14:35:43,695 checking C compiler flags needed for avx2... none 2023-10-05T14:35:43,864 checking C compiler flags needed for avx512f... none 2023-10-05T14:35:43,867 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T14:35:43,876 checking pkg-config is at least version 0.9.0... yes 2023-10-05T14:35:43,879 checking for special C compiler options needed for large files... no 2023-10-05T14:35:44,088 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T14:35:44,103 checking shared library type for unknown-Linux... plain .so 2023-10-05T14:35:44,219 checking whether the linker supports versioned symbols... no 2023-10-05T14:35:44,387 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T14:35:44,399 checking for stdlib.h... (cached) yes 2023-10-05T14:35:44,423 checking for unistd.h... (cached) yes 2023-10-05T14:35:44,581 checking for sys/param.h... yes 2023-10-05T14:35:44,799 checking for getpagesize... yes 2023-10-05T14:35:45,111 checking for working mmap... yes 2023-10-05T14:35:45,306 checking for gmtime_r... yes 2023-10-05T14:35:45,525 checking for fsync... yes 2023-10-05T14:35:45,772 checking for drand48... yes 2023-10-05T14:35:45,996 checking for srand48_deterministic... no 2023-10-05T14:35:46,158 checking whether fdatasync is declared... yes 2023-10-05T14:35:46,337 checking for fdatasync... yes 2023-10-05T14:35:46,777 checking for library containing log... -lm 2023-10-05T14:35:46,879 checking for zlib.h... yes 2023-10-05T14:35:47,059 checking for inflate in -lz... yes 2023-10-05T14:35:47,264 checking for library containing recv... none required 2023-10-05T14:35:47,359 checking for bzlib.h... yes 2023-10-05T14:35:47,537 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T14:35:47,638 checking for lzma.h... yes 2023-10-05T14:35:47,826 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T14:35:47,831 checking whether htscodecs files are present... yes 2023-10-05T14:35:47,913 checking for libdeflate.h... yes 2023-10-05T14:35:48,123 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T14:35:48,257 checking for curl/curl.h... yes 2023-10-05T14:35:48,610 checking for curl_easy_pause in -lcurl... yes 2023-10-05T14:35:48,819 checking for CCHmac... no 2023-10-05T14:35:49,626 checking for library containing HMAC... -lcrypto 2023-10-05T14:35:49,810 checking for library containing regcomp... none required 2023-10-05T14:35:49,880 configure: creating ./config.status 2023-10-05T14:35:50,197 config.status: creating config.mk 2023-10-05T14:35:50,241 config.status: creating htslib.pc.tmp 2023-10-05T14:35:50,288 config.status: creating config.h 2023-10-05T14:35:50,308 config.status: config.h is unchanged 2023-10-05T14:35:50,314 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T14:35:51,098 # pysam: htslib configure options: --enable-libcurl 2023-10-05T14:35:51,099 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T14:35:51,099 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T14:35:51,099 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T14:35:51,099 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T14:35:51,100 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T14:35:51,100 # pysam: htslib_config PLATFORM=default 2023-10-05T14:35:51,100 # pysam: config_option: ENABLE_GCS=1 2023-10-05T14:35:51,100 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T14:35:51,100 # pysam: config_option: ENABLE_S3=1 2023-10-05T14:35:51,100 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_HMAC=1 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T14:35:51,101 # pysam: config_option: HAVE_MMAP=1 2023-10-05T14:35:51,101 running dist_info 2023-10-05T14:35:51,105 creating /tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info 2023-10-05T14:35:51,110 writing /tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/PKG-INFO 2023-10-05T14:35:51,114 writing dependency_links to /tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/dependency_links.txt 2023-10-05T14:35:51,116 writing top-level names to /tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/top_level.txt 2023-10-05T14:35:51,118 writing manifest file '/tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/SOURCES.txt' 2023-10-05T14:35:51,190 reading manifest file '/tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/SOURCES.txt' 2023-10-05T14:35:51,192 reading manifest template 'MANIFEST.in' 2023-10-05T14:35:51,194 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T14:35:51,194 warning: no files found matching 'THANKS' 2023-10-05T14:35:51,204 no previously-included directories found matching 'tests/' 2023-10-05T14:35:51,324 adding license file 'COPYING' 2023-10-05T14:35:51,325 adding license file 'AUTHORS' 2023-10-05T14:35:51,346 writing manifest file '/tmp/pip-modern-metadata-l7e0gkb9/pysam.egg-info/SOURCES.txt' 2023-10-05T14:35:51,348 creating '/tmp/pip-modern-metadata-l7e0gkb9/pysam-0.22.0.dist-info' 2023-10-05T14:35:51,498 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-05T14:35:51,504 Source in /tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 has version 0.22.0, which satisfies requirement pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz 2023-10-05T14:35:51,505 Removed pysam==0.22.0 from https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz from build tracker '/tmp/pip-build-tracker-yr7up390' 2023-10-05T14:35:51,511 Created temporary directory: /tmp/pip-unpack-4quah70h 2023-10-05T14:35:51,512 Created temporary directory: /tmp/pip-unpack-0ssr7w4k 2023-10-05T14:35:51,514 Building wheels for collected packages: pysam 2023-10-05T14:35:51,518 Created temporary directory: /tmp/pip-wheel-vplp1wq1 2023-10-05T14:35:51,518 Destination directory: /tmp/pip-wheel-vplp1wq1 2023-10-05T14:35:51,521 Building wheel for pysam (pyproject.toml): started 2023-10-05T14:35:51,522 Running command Building wheel for pysam (pyproject.toml) 2023-10-05T14:35:52,017 # pysam: cython is available - using cythonize if necessary 2023-10-05T14:35:52,017 # pysam: htslib mode is shared 2023-10-05T14:35:52,017 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2023-10-05T14:35:52,018 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:52,018 # pysam: (sysconfig) CFLAGS=-Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-05T14:35:52,018 # pysam: (sysconfig) LDFLAGS= -Wl,-z,relro -g -fwrapv -O2 2023-10-05T14:35:52,333 checking for gcc... arm-linux-gnueabihf-gcc -pthread 2023-10-05T14:35:52,592 checking whether the C compiler works... yes 2023-10-05T14:35:52,593 checking for C compiler default output file name... a.out 2023-10-05T14:35:52,760 checking for suffix of executables... 2023-10-05T14:35:52,979 checking whether we are cross compiling... no 2023-10-05T14:35:53,071 checking for suffix of object files... o 2023-10-05T14:35:53,152 checking whether we are using the GNU C compiler... yes 2023-10-05T14:35:53,232 checking whether arm-linux-gnueabihf-gcc -pthread accepts -g... yes 2023-10-05T14:35:53,358 checking for arm-linux-gnueabihf-gcc -pthread option to accept ISO C89... none needed 2023-10-05T14:35:53,360 checking for ranlib... ranlib 2023-10-05T14:35:53,369 checking for grep that handles long lines and -e... /usr/bin/grep 2023-10-05T14:35:53,661 checking for C compiler warning flags... unknown 2023-10-05T14:35:53,812 checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -pthread -E 2023-10-05T14:35:53,922 checking for egrep... /usr/bin/grep -E 2023-10-05T14:35:54,370 checking for ANSI C header files... yes 2023-10-05T14:35:54,490 checking for sys/types.h... yes 2023-10-05T14:35:54,662 checking for sys/stat.h... yes 2023-10-05T14:35:54,796 checking for stdlib.h... yes 2023-10-05T14:35:54,937 checking for string.h... yes 2023-10-05T14:35:55,082 checking for memory.h... yes 2023-10-05T14:35:55,224 checking for strings.h... yes 2023-10-05T14:35:55,399 checking for inttypes.h... yes 2023-10-05T14:35:55,545 checking for stdint.h... yes 2023-10-05T14:35:55,701 checking for unistd.h... yes 2023-10-05T14:35:55,873 checking whether _XOPEN_SOURCE is declared... no 2023-10-05T14:35:56,043 checking C compiler flags needed for ssse3... none 2023-10-05T14:35:56,246 checking C compiler flags needed for popcnt... none 2023-10-05T14:35:56,416 checking C compiler flags needed for sse4.1... none 2023-10-05T14:35:56,587 checking C compiler flags needed for avx2... none 2023-10-05T14:35:56,759 checking C compiler flags needed for avx512f... none 2023-10-05T14:35:56,762 checking for pkg-config... /usr/bin/pkg-config 2023-10-05T14:35:56,770 checking pkg-config is at least version 0.9.0... yes 2023-10-05T14:35:56,772 checking for special C compiler options needed for large files... no 2023-10-05T14:35:56,969 checking for _FILE_OFFSET_BITS value needed for large files... 64 2023-10-05T14:35:56,991 checking shared library type for unknown-Linux... plain .so 2023-10-05T14:35:57,152 checking whether the linker supports versioned symbols... no 2023-10-05T14:35:57,321 checking whether the compiler accepts -fvisibility=hidden... yes 2023-10-05T14:35:57,333 checking for stdlib.h... (cached) yes 2023-10-05T14:35:57,357 checking for unistd.h... (cached) yes 2023-10-05T14:35:57,521 checking for sys/param.h... yes 2023-10-05T14:35:57,715 checking for getpagesize... yes 2023-10-05T14:35:58,064 checking for working mmap... yes 2023-10-05T14:35:58,257 checking for gmtime_r... yes 2023-10-05T14:35:58,465 checking for fsync... yes 2023-10-05T14:35:58,681 checking for drand48... yes 2023-10-05T14:35:58,960 checking for srand48_deterministic... no 2023-10-05T14:35:59,347 checking whether fdatasync is declared... yes 2023-10-05T14:35:59,525 checking for fdatasync... yes 2023-10-05T14:35:59,957 checking for library containing log... -lm 2023-10-05T14:36:00,057 checking for zlib.h... yes 2023-10-05T14:36:00,237 checking for inflate in -lz... yes 2023-10-05T14:36:00,461 checking for library containing recv... none required 2023-10-05T14:36:00,547 checking for bzlib.h... yes 2023-10-05T14:36:00,727 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2023-10-05T14:36:00,831 checking for lzma.h... yes 2023-10-05T14:36:01,021 checking for lzma_easy_buffer_encode in -llzma... yes 2023-10-05T14:36:01,025 checking whether htscodecs files are present... yes 2023-10-05T14:36:01,107 checking for libdeflate.h... yes 2023-10-05T14:36:01,324 checking for libdeflate_deflate_compress in -ldeflate... yes 2023-10-05T14:36:01,458 checking for curl/curl.h... yes 2023-10-05T14:36:01,808 checking for curl_easy_pause in -lcurl... yes 2023-10-05T14:36:02,021 checking for CCHmac... no 2023-10-05T14:36:02,572 checking for library containing HMAC... -lcrypto 2023-10-05T14:36:02,757 checking for library containing regcomp... none required 2023-10-05T14:36:02,820 configure: creating ./config.status 2023-10-05T14:36:03,151 config.status: creating config.mk 2023-10-05T14:36:03,217 config.status: creating htslib.pc.tmp 2023-10-05T14:36:03,278 config.status: creating config.h 2023-10-05T14:36:03,301 config.status: config.h is unchanged 2023-10-05T14:36:03,308 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2023-10-05T14:36:04,164 # pysam: htslib configure options: --enable-libcurl 2023-10-05T14:36:04,164 # pysam: htslib_config HTS_CFLAGS_AVX2= 2023-10-05T14:36:04,164 # pysam: htslib_config HTS_CFLAGS_AVX512= 2023-10-05T14:36:04,164 # pysam: htslib_config HTS_CFLAGS_SSE4= 2023-10-05T14:36:04,165 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T14:36:04,165 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2023-10-05T14:36:04,165 # pysam: htslib_config PLATFORM=default 2023-10-05T14:36:04,165 # pysam: config_option: ENABLE_GCS=1 2023-10-05T14:36:04,165 # pysam: config_option: ENABLE_PLUGINS=0 2023-10-05T14:36:04,165 # pysam: config_option: ENABLE_S3=1 2023-10-05T14:36:04,165 # pysam: config_option: HAVE_COMMONCRYPTO=0 2023-10-05T14:36:04,165 # pysam: config_option: HAVE_HMAC=1 2023-10-05T14:36:04,165 # pysam: config_option: HAVE_LIBBZ2=1 2023-10-05T14:36:04,166 # pysam: config_option: HAVE_LIBCURL=1 2023-10-05T14:36:04,166 # pysam: config_option: HAVE_LIBDEFLATE=1 2023-10-05T14:36:04,166 # pysam: config_option: HAVE_LIBLZMA=1 2023-10-05T14:36:04,166 # pysam: config_option: HAVE_MMAP=1 2023-10-05T14:36:04,166 running bdist_wheel 2023-10-05T14:36:04,185 running build 2023-10-05T14:36:04,185 running build_py 2023-10-05T14:36:04,193 creating build 2023-10-05T14:36:04,194 creating build/lib.linux-armv7l-cpython-39 2023-10-05T14:36:04,195 creating build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,197 copying pysam/version.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,200 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,202 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,209 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,211 copying pysam/config.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,214 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,217 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,220 creating build/lib.linux-armv7l-cpython-39/pysam/include 2023-10-05T14:36:04,222 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-39/pysam/include 2023-10-05T14:36:04,226 running egg_info 2023-10-05T14:36:04,232 writing pysam.egg-info/PKG-INFO 2023-10-05T14:36:04,236 writing dependency_links to pysam.egg-info/dependency_links.txt 2023-10-05T14:36:04,238 writing top-level names to pysam.egg-info/top_level.txt 2023-10-05T14:36:04,331 reading manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T14:36:04,396 reading manifest template 'MANIFEST.in' 2023-10-05T14:36:04,397 warning: no files found matching 'KNOWN_BUGS' 2023-10-05T14:36:04,398 warning: no files found matching 'THANKS' 2023-10-05T14:36:04,407 no previously-included directories found matching 'tests/' 2023-10-05T14:36:04,529 adding license file 'COPYING' 2023-10-05T14:36:04,530 adding license file 'AUTHORS' 2023-10-05T14:36:04,558 writing manifest file 'pysam.egg-info/SOURCES.txt' 2023-10-05T14:36:04,565 /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. 2023-10-05T14:36:04,565 !! 2023-10-05T14:36:04,565 ******************************************************************************** 2023-10-05T14:36:04,565 ############################ 2023-10-05T14:36:04,565 # Package would be ignored # 2023-10-05T14:36:04,565 ############################ 2023-10-05T14:36:04,566 Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], 2023-10-05T14:36:04,566 but it is absent from setuptools' `packages` configuration. 2023-10-05T14:36:04,566 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T14:36:04,566 package, please make sure that 'pysam.include.htslib.cram' is explicitly added 2023-10-05T14:36:04,566 to the `packages` configuration field. 2023-10-05T14:36:04,566 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T14:36:04,566 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T14:36:04,567 instead of `find_packages(...)`/`find:`). 2023-10-05T14:36:04,567 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T14:36:04,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T14:36:04,567 If you don't want 'pysam.include.htslib.cram' to be distributed and are 2023-10-05T14:36:04,567 already explicitly excluding 'pysam.include.htslib.cram' via 2023-10-05T14:36:04,567 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T14:36:04,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T14:36:04,568 combination with a more fine grained `package-data` configuration. 2023-10-05T14:36:04,568 You can read more about "package data files" on setuptools documentation page: 2023-10-05T14:36:04,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T14:36:04,568 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T14:36:04,569 even if it does not contain any `.py` files. 2023-10-05T14:36:04,569 On the other hand, currently there is no concept of package data 2023-10-05T14:36:04,569 directory, all directories are treated like packages. 2023-10-05T14:36:04,569 ******************************************************************************** 2023-10-05T14:36:04,569 !! 2023-10-05T14:36:04,569 check.warn(importable) 2023-10-05T14:36:04,572 /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. 2023-10-05T14:36:04,572 !! 2023-10-05T14:36:04,572 ******************************************************************************** 2023-10-05T14:36:04,572 ############################ 2023-10-05T14:36:04,572 # Package would be ignored # 2023-10-05T14:36:04,572 ############################ 2023-10-05T14:36:04,572 Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], 2023-10-05T14:36:04,573 but it is absent from setuptools' `packages` configuration. 2023-10-05T14:36:04,573 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T14:36:04,573 package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added 2023-10-05T14:36:04,573 to the `packages` configuration field. 2023-10-05T14:36:04,573 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T14:36:04,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T14:36:04,573 instead of `find_packages(...)`/`find:`). 2023-10-05T14:36:04,574 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T14:36:04,574 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T14:36:04,574 If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are 2023-10-05T14:36:04,574 already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via 2023-10-05T14:36:04,574 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T14:36:04,574 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T14:36:04,575 combination with a more fine grained `package-data` configuration. 2023-10-05T14:36:04,575 You can read more about "package data files" on setuptools documentation page: 2023-10-05T14:36:04,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T14:36:04,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T14:36:04,575 even if it does not contain any `.py` files. 2023-10-05T14:36:04,575 On the other hand, currently there is no concept of package data 2023-10-05T14:36:04,576 directory, all directories are treated like packages. 2023-10-05T14:36:04,576 ******************************************************************************** 2023-10-05T14:36:04,576 !! 2023-10-05T14:36:04,576 check.warn(importable) 2023-10-05T14:36:04,580 /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. 2023-10-05T14:36:04,580 !! 2023-10-05T14:36:04,580 ******************************************************************************** 2023-10-05T14:36:04,580 ############################ 2023-10-05T14:36:04,581 # Package would be ignored # 2023-10-05T14:36:04,581 ############################ 2023-10-05T14:36:04,581 Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], 2023-10-05T14:36:04,581 but it is absent from setuptools' `packages` configuration. 2023-10-05T14:36:04,581 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T14:36:04,581 package, please make sure that 'pysam.include.htslib.m4' is explicitly added 2023-10-05T14:36:04,581 to the `packages` configuration field. 2023-10-05T14:36:04,582 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T14:36:04,582 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T14:36:04,582 instead of `find_packages(...)`/`find:`). 2023-10-05T14:36:04,582 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T14:36:04,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T14:36:04,583 If you don't want 'pysam.include.htslib.m4' to be distributed and are 2023-10-05T14:36:04,583 already explicitly excluding 'pysam.include.htslib.m4' via 2023-10-05T14:36:04,583 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T14:36:04,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T14:36:04,583 combination with a more fine grained `package-data` configuration. 2023-10-05T14:36:04,583 You can read more about "package data files" on setuptools documentation page: 2023-10-05T14:36:04,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T14:36:04,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T14:36:04,584 even if it does not contain any `.py` files. 2023-10-05T14:36:04,584 On the other hand, currently there is no concept of package data 2023-10-05T14:36:04,584 directory, all directories are treated like packages. 2023-10-05T14:36:04,584 ******************************************************************************** 2023-10-05T14:36:04,584 !! 2023-10-05T14:36:04,584 check.warn(importable) 2023-10-05T14:36:04,585 /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. 2023-10-05T14:36:04,585 !! 2023-10-05T14:36:04,585 ******************************************************************************** 2023-10-05T14:36:04,585 ############################ 2023-10-05T14:36:04,585 # Package would be ignored # 2023-10-05T14:36:04,585 ############################ 2023-10-05T14:36:04,585 Python recognizes 'pysam.include.htslib.os' as an importable package[^1], 2023-10-05T14:36:04,586 but it is absent from setuptools' `packages` configuration. 2023-10-05T14:36:04,586 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T14:36:04,586 package, please make sure that 'pysam.include.htslib.os' is explicitly added 2023-10-05T14:36:04,586 to the `packages` configuration field. 2023-10-05T14:36:04,586 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T14:36:04,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T14:36:04,587 instead of `find_packages(...)`/`find:`). 2023-10-05T14:36:04,587 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T14:36:04,587 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T14:36:04,587 If you don't want 'pysam.include.htslib.os' to be distributed and are 2023-10-05T14:36:04,588 already explicitly excluding 'pysam.include.htslib.os' via 2023-10-05T14:36:04,588 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T14:36:04,588 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T14:36:04,588 combination with a more fine grained `package-data` configuration. 2023-10-05T14:36:04,588 You can read more about "package data files" on setuptools documentation page: 2023-10-05T14:36:04,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T14:36:04,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T14:36:04,589 even if it does not contain any `.py` files. 2023-10-05T14:36:04,589 On the other hand, currently there is no concept of package data 2023-10-05T14:36:04,589 directory, all directories are treated like packages. 2023-10-05T14:36:04,589 ******************************************************************************** 2023-10-05T14:36:04,590 !! 2023-10-05T14:36:04,590 check.warn(importable) 2023-10-05T14:36:04,590 /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. 2023-10-05T14:36:04,590 !! 2023-10-05T14:36:04,590 ******************************************************************************** 2023-10-05T14:36:04,590 ############################ 2023-10-05T14:36:04,590 # Package would be ignored # 2023-10-05T14:36:04,591 ############################ 2023-10-05T14:36:04,591 Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], 2023-10-05T14:36:04,591 but it is absent from setuptools' `packages` configuration. 2023-10-05T14:36:04,591 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-05T14:36:04,591 package, please make sure that 'pysam.include.samtools.lz4' is explicitly added 2023-10-05T14:36:04,591 to the `packages` configuration field. 2023-10-05T14:36:04,591 Alternatively, you can also rely on setuptools' discovery methods 2023-10-05T14:36:04,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-05T14:36:04,592 instead of `find_packages(...)`/`find:`). 2023-10-05T14:36:04,592 You can read more about "package discovery" on setuptools documentation page: 2023-10-05T14:36:04,592 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-05T14:36:04,593 If you don't want 'pysam.include.samtools.lz4' to be distributed and are 2023-10-05T14:36:04,593 already explicitly excluding 'pysam.include.samtools.lz4' via 2023-10-05T14:36:04,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-05T14:36:04,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-05T14:36:04,593 combination with a more fine grained `package-data` configuration. 2023-10-05T14:36:04,593 You can read more about "package data files" on setuptools documentation page: 2023-10-05T14:36:04,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-05T14:36:04,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-05T14:36:04,594 even if it does not contain any `.py` files. 2023-10-05T14:36:04,594 On the other hand, currently there is no concept of package data 2023-10-05T14:36:04,594 directory, all directories are treated like packages. 2023-10-05T14:36:04,595 ******************************************************************************** 2023-10-05T14:36:04,595 !! 2023-10-05T14:36:04,595 check.warn(importable) 2023-10-05T14:36:04,627 copying pysam/cbcftools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,629 copying pysam/csamtools_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,630 copying pysam/htslib_util.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,632 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,634 copying pysam/libcalignedsegment.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,693 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,695 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,698 copying pysam/libcalignedsegment.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,702 copying pysam/libcalignmentfile.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,756 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,758 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,761 copying pysam/libcalignmentfile.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,765 copying pysam/libcbcf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,860 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,862 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,865 copying pysam/libcbcf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,870 copying pysam/libcbcftools.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,880 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,881 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,883 copying pysam/libcbcftools.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,885 copying pysam/libcbgzf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,898 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,900 copying pysam/libcbgzf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,902 copying pysam/libcfaidx.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,929 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,931 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,933 copying pysam/libcfaidx.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,936 copying pysam/libchtslib.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,961 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,965 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,967 copying pysam/libchtslib.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,970 copying pysam/libcsamfile.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,983 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,985 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,987 copying pysam/libcsamfile.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,989 copying pysam/libcsamtools.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,996 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:04,998 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,000 copying pysam/libcsamtools.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,001 copying pysam/libctabix.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,033 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,036 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,038 copying pysam/libctabix.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,041 copying pysam/libctabixproxies.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,069 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,071 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,073 copying pysam/libctabixproxies.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,077 copying pysam/libcutils.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,096 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,099 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,102 copying pysam/libcutils.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,106 copying pysam/libcvcf.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,157 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,159 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,162 copying pysam/libcvcf.pyx -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,166 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,169 copying pysam/pysam_stream.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,172 copying pysam/pysam_util.c -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,174 copying pysam/pysam_util.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,177 copying pysam/version.h -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,180 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-39/pysam 2023-10-05T14:36:05,183 creating build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,184 copying samtools/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,187 copying samtools/README -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,191 copying samtools/amplicon_stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,195 copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,199 copying samtools/bam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,202 copying samtools/bam.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,205 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,207 copying samtools/bam2depth.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,210 copying samtools/bam2depth.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,213 copying samtools/bam_addrprg.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,216 copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,219 copying samtools/bam_ampliconclip.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,222 copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,225 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,227 copying samtools/bam_aux.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,230 copying samtools/bam_aux.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,232 copying samtools/bam_cat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,235 copying samtools/bam_cat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,238 copying samtools/bam_color.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,241 copying samtools/bam_color.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,244 copying samtools/bam_consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,249 copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,254 copying samtools/bam_fastq.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,257 copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,260 copying samtools/bam_flags.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,263 copying samtools/bam_flags.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,266 copying samtools/bam_import.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,269 copying samtools/bam_import.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,272 copying samtools/bam_index.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,274 copying samtools/bam_index.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,277 copying samtools/bam_lpileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,280 copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,283 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,285 copying samtools/bam_markdup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,289 copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,293 copying samtools/bam_mate.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,297 copying samtools/bam_mate.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,300 copying samtools/bam_md.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,303 copying samtools/bam_md.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,306 copying samtools/bam_plbuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,309 copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,311 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,313 copying samtools/bam_plcmd.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,316 copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,320 copying samtools/bam_quickcheck.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,323 copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,325 copying samtools/bam_reheader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,328 copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,331 copying samtools/bam_rmdup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,334 copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,337 copying samtools/bam_rmdupse.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,340 copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,342 copying samtools/bam_samples.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,345 copying samtools/bam_samples.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,348 copying samtools/bam_sort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,352 copying samtools/bam_sort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,357 copying samtools/bam_split.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,360 copying samtools/bam_split.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,364 copying samtools/bam_stat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,366 copying samtools/bam_stat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,369 copying samtools/bamshuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,372 copying samtools/bamshuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,375 copying samtools/bamtk.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,378 copying samtools/bamtk.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,381 copying samtools/bedcov.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,384 copying samtools/bedcov.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,387 copying samtools/bedidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,390 copying samtools/bedidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,393 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,395 copying samtools/consensus_pileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,398 copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,401 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,404 copying samtools/coverage.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,407 copying samtools/coverage.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,410 copying samtools/cram_size.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,413 copying samtools/cram_size.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,416 copying samtools/cut_target.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,419 copying samtools/cut_target.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,421 copying samtools/dict.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,424 copying samtools/dict.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,427 copying samtools/faidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,430 copying samtools/faidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,433 copying samtools/padding.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,436 copying samtools/padding.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,439 copying samtools/phase.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,442 copying samtools/phase.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,445 copying samtools/reference.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,448 copying samtools/reference.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,452 copying samtools/reset.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,455 copying samtools/reset.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,458 copying samtools/sam_opts.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,460 copying samtools/sam_opts.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,463 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,466 copying samtools/sam_utils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,469 copying samtools/sam_utils.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,473 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,475 copying samtools/sam_view.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,480 copying samtools/sam_view.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,483 copying samtools/sample.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,486 copying samtools/sample.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,489 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,491 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,493 copying samtools/samtools.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,496 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,498 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,501 copying samtools/stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,505 copying samtools/stats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,510 copying samtools/stats_isize.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,512 copying samtools/stats_isize.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,515 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,517 copying samtools/tmp_file.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,520 copying samtools/tmp_file.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,523 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,525 copying samtools/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,528 creating build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-10-05T14:36:05,529 copying samtools/lz4/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-10-05T14:36:05,532 copying samtools/lz4/lz4.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-10-05T14:36:05,535 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-10-05T14:36:05,539 copying samtools/lz4/lz4.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4 2023-10-05T14:36:05,542 copying samtools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/samtools 2023-10-05T14:36:05,544 creating build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,546 copying bcftools/HMM.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,549 copying bcftools/HMM.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,552 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,555 copying bcftools/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,558 copying bcftools/README -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,560 copying bcftools/abuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,564 copying bcftools/abuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,567 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,569 copying bcftools/bam2bcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,573 copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,576 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,579 copying bcftools/bam2bcf_iaux.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,582 copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,585 copying bcftools/bam2bcf_indel.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,589 copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,592 copying bcftools/bam_sample.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,595 copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,598 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,600 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,603 copying bcftools/bcftools.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,605 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,607 copying bcftools/bin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,610 copying bcftools/bin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,612 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,614 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,617 copying bcftools/ccall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,620 copying bcftools/ccall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,623 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,625 copying bcftools/cols.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,628 copying bcftools/cols.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,630 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,633 copying bcftools/consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,636 copying bcftools/consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,640 copying bcftools/convert.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,644 copying bcftools/convert.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,647 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,650 copying bcftools/csq.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,655 copying bcftools/csq.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,660 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,662 copying bcftools/dist.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,665 copying bcftools/dist.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,667 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,669 copying bcftools/em.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,672 copying bcftools/em.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,675 copying bcftools/extsort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,678 copying bcftools/extsort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,681 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,683 copying bcftools/filter.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,688 copying bcftools/filter.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,694 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,696 copying bcftools/gff.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,700 copying bcftools/gff.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,704 copying bcftools/gff.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,706 copying bcftools/gvcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,709 copying bcftools/gvcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,712 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,714 copying bcftools/hclust.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,716 copying bcftools/hclust.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,719 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,721 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,723 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,726 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,728 copying bcftools/kmin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,731 copying bcftools/kmin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,733 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,735 copying bcftools/main.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,738 copying bcftools/main.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,740 copying bcftools/mcall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,745 copying bcftools/mcall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,749 copying bcftools/mpileup.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,754 copying bcftools/mpileup.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,758 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,763 copying bcftools/ploidy.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,765 copying bcftools/ploidy.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,768 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,770 copying bcftools/prob1.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,773 copying bcftools/prob1.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,776 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,778 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,780 copying bcftools/read_consensus.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,783 copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,787 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,789 copying bcftools/regidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,792 copying bcftools/regidx.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,795 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,797 copying bcftools/reheader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,800 copying bcftools/reheader.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,804 copying bcftools/smpl_ilist.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,806 copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,809 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,811 copying bcftools/str_finder.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,814 copying bcftools/str_finder.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,816 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,818 copying bcftools/tabix.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,821 copying bcftools/tabix.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,823 copying bcftools/tsv2vcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,825 copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,827 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,830 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,833 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,836 copying bcftools/vcfannotate.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,841 copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,847 copying bcftools/vcfbuf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,850 copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,853 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,855 copying bcftools/vcfcall.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,858 copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,861 copying bcftools/vcfcnv.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,865 copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,868 copying bcftools/vcfconcat.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,871 copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,874 copying bcftools/vcfconvert.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,878 copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,882 copying bcftools/vcffilter.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,885 copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,888 copying bcftools/vcfgtcheck.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,892 copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,895 copying bcftools/vcfhead.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,898 copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,901 copying bcftools/vcfindex.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,904 copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,907 copying bcftools/vcfisec.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,911 copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,915 copying bcftools/vcfmerge.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,923 copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,929 copying bcftools/vcfnorm.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,935 copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,941 copying bcftools/vcfplugin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,945 copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,949 copying bcftools/vcfquery.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,952 copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,956 copying bcftools/vcfroh.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,961 copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,966 copying bcftools/vcfsom.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,970 copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,974 copying bcftools/vcfsort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,978 copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,981 copying bcftools/vcfstats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,988 copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,994 copying bcftools/vcfview.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:05,999 copying bcftools/vcfview.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,003 copying bcftools/vcmp.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,005 copying bcftools/vcmp.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,007 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,009 copying bcftools/version.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,012 copying bcftools/version.c.pysam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,014 copying bcftools/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,016 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/bcftools 2023-10-05T14:36:06,018 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,019 copying htslib/LICENSE -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,021 copying htslib/Makefile -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,024 copying htslib/README -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,026 copying htslib/bcf_sr_sort.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,029 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,031 copying htslib/bgzf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,035 copying htslib/bgzip.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,038 copying htslib/builddir_vars.mk.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,040 copying htslib/config.h.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,042 copying htslib/config.mk.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,044 copying htslib/configure -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,050 copying htslib/configure.ac -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,053 copying htslib/errmod.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,056 copying htslib/faidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,059 copying htslib/header.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,062 copying htslib/header.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,065 copying htslib/hfile.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,068 copying htslib/hfile_gcs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,070 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,073 copying htslib/hfile_libcurl.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,076 copying htslib/hfile_s3.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,079 copying htslib/hfile_s3_write.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,081 copying htslib/hts.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,086 copying htslib/hts_expr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,089 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,091 copying htslib/hts_os.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,093 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,095 copying htslib/htscodecs_bundled.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,097 copying htslib/htscodecs_external.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,099 copying htslib/htsfile.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,102 copying htslib/htslib.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,104 copying htslib/htslib.pc.in -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,106 copying htslib/htslib_vars.mk -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,108 copying htslib/kfunc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,110 copying htslib/kstring.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,112 copying htslib/md5.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,115 copying htslib/multipart.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,117 copying htslib/plugin.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,120 copying htslib/probaln.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,122 copying htslib/realn.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,125 copying htslib/regidx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,128 copying htslib/region.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,130 copying htslib/sam.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,137 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,139 copying htslib/sam_mods.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,142 copying htslib/synced_bcf_reader.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,145 copying htslib/tabix.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,148 copying htslib/tbx.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,150 copying htslib/textutils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,153 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,155 copying htslib/thread_pool.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,159 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,161 copying htslib/vcf.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,167 copying htslib/vcf_sweep.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,169 copying htslib/vcfutils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,173 copying htslib/version.sh -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,174 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,175 copying htslib/cram/cram.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,178 copying htslib/cram/cram_codecs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,185 copying htslib/cram/cram_codecs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,189 copying htslib/cram/cram_decode.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,193 copying htslib/cram/cram_decode.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,195 copying htslib/cram/cram_encode.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,200 copying htslib/cram/cram_encode.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,203 copying htslib/cram/cram_external.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,206 copying htslib/cram/cram_index.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,209 copying htslib/cram/cram_index.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,212 copying htslib/cram/cram_io.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,217 copying htslib/cram/cram_io.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,221 copying htslib/cram/cram_samtools.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,223 copying htslib/cram/cram_stats.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,226 copying htslib/cram/cram_stats.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,229 copying htslib/cram/cram_structs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,232 copying htslib/cram/mFILE.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,235 copying htslib/cram/mFILE.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,237 copying htslib/cram/misc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,240 copying htslib/cram/open_trace_file.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,243 copying htslib/cram/open_trace_file.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,246 copying htslib/cram/os.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,249 copying htslib/cram/pooled_alloc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,252 copying htslib/cram/pooled_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,254 copying htslib/cram/string_alloc.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,257 copying htslib/cram/string_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram 2023-10-05T14:36:06,259 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs 2023-10-05T14:36:06,260 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,261 copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,266 copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,269 copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,271 copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,274 copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,278 copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,281 copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,283 copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,286 copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,288 copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,292 copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,294 copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,297 copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,299 copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,301 copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,305 copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,307 copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,309 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,312 copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,315 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,319 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,323 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,327 copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,332 copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,335 copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,339 copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,342 copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,345 copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,348 copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,353 copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,356 copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,359 copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,362 copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,365 copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,368 copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:36:06,370 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-10-05T14:36:06,371 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-10-05T14:36:06,374 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-10-05T14:36:06,377 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-10-05T14:36:06,380 copying htslib/m4/pkg.m4 -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4 2023-10-05T14:36:06,383 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-10-05T14:36:06,384 copying htslib/os/lzma_stub.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-10-05T14:36:06,387 copying htslib/os/rand.c -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os 2023-10-05T14:36:06,389 copying htslib/config.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib 2023-10-05T14:36:06,392 creating build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,393 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,396 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,400 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,403 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,406 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,410 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,413 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,415 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,418 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,421 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,423 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,426 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,429 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,432 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,435 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,438 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,441 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,443 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,446 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,449 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,452 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,455 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,460 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,463 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,466 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,469 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,473 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,475 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib 2023-10-05T14:36:06,483 running build_ext 2023-10-05T14:36:06,488 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2023-10-05T14:36:06,490 building 'libhts.a' 2023-10-05T14:36:06,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2023-10-05T14:36:06,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2023-10-05T14:36:07,689 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2023-10-05T14:36:09,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2023-10-05T14:36:12,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2023-10-05T14:36:13,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2023-10-05T14:36:14,711 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2023-10-05T14:36:18,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2023-10-05T14:36:19,903 echo '#define HTS_VERSION_TEXT "1.18"' > version.h 2023-10-05T14:36:19,909 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2023-10-05T14:36:27,420 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2023-10-05T14:36:28,938 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2023-10-05T14:36:29,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2023-10-05T14:36:29,579 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2023-10-05T14:36:30,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2023-10-05T14:36:30,673 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2023-10-05T14:36:31,479 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2023-10-05T14:36:32,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2023-10-05T14:36:33,311 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2023-10-05T14:36:44,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c 2023-10-05T14:36:45,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2023-10-05T14:36:47,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2023-10-05T14:36:47,876 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2023-10-05T14:36:48,603 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2023-10-05T14:36:49,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2023-10-05T14:36:50,205 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2023-10-05T14:37:02,679 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2023-10-05T14:37:05,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2023-10-05T14:37:10,229 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2023-10-05T14:37:15,758 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2023-10-05T14:37:23,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c 2023-10-05T14:37:24,113 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c 2023-10-05T14:37:25,367 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c 2023-10-05T14:37:31,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c 2023-10-05T14:37:32,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c 2023-10-05T14:37:33,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c 2023-10-05T14:37:33,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2023-10-05T14:37:33,727 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c 2023-10-05T14:37:33,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2023-10-05T14:37:37,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2023-10-05T14:37:41,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2023-10-05T14:37:41,433 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2023-10-05T14:37:42,062 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2023-10-05T14:37:46,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2023-10-05T14:37:46,367 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2023-10-05T14:37:46,429 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2023-10-05T14:37:46,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c 2023-10-05T14:37:46,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2023-10-05T14:37:49,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2023-10-05T14:37:51,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2023-10-05T14:37:51,532 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2023-10-05T14:37:54,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2023-10-05T14:37:54,313 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2023-10-05T14:37:56,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2023-10-05T14:37:56,897 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2023-10-05T14:37:59,412 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3_write.o hfile_s3_write.c 2023-10-05T14:38:00,595 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o 2023-10-05T14:38:00,754 ranlib libhts.a 2023-10-05T14:38:06,446 Compiling pysam/libchtslib.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T14:38:06,447 [1/1] Cythonizing pysam/libchtslib.pyx 2023-10-05T14:38:06,448 building 'pysam.libchtslib' extension 2023-10-05T14:38:06,448 creating build/temp.linux-armv7l-cpython-39 2023-10-05T14:38:06,449 creating build/temp.linux-armv7l-cpython-39/pysam 2023-10-05T14:38:06,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:06,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:38,531 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/htslib_util.o build/temp.linux-armv7l-cpython-39/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o htslib/hfile_s3_write.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:38:39,210 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2023-10-05T14:38:39,218 building 'pysam.libcsamtools' extension 2023-10-05T14:38:39,220 creating build/temp.linux-armv7l-cpython-39/samtools 2023-10-05T14:38:39,222 creating build/temp.linux-armv7l-cpython-39/samtools/lz4 2023-10-05T14:38:39,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:41,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:44,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:45,068 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:47,135 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:47,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:49,607 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:49,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:50,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:50,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:53,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:55,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:55,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:56,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:56,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:38:57,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:01,530 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:02,736 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:03,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:03,875 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:06,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:06,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:08,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:09,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:10,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:11,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:20,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:21,543 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:22,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:24,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:24,729 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:25,727 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:27,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:27,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:28,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:29,748 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:30,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:31,301 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:31,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:37,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:38,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:40,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:41,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:42,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:43,544 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:44,063 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:46,733 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:47,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:47,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:52,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:52,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:53,088 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-39/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-39/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-39/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:39:53,528 building 'pysam.libcbcftools' extension 2023-10-05T14:39:53,531 creating build/temp.linux-armv7l-cpython-39/bcftools 2023-10-05T14:39:53,534 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:54,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:56,844 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:39:58,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:00,409 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:02,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:04,321 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:04,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:04,819 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:05,965 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:07,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:10,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:15,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:21,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:21,716 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:22,216 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:22,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:35,790 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/gff.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:38,345 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:38,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:40,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:40,628 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:40,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:44,194 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:47,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:47,990 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:49,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:50,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:52,161 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:54,953 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:55,367 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:55,761 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:56,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:40:56,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:04,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:05,807 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:08,161 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:10,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:12,474 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:15,814 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:17,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:19,884 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:20,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:20,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:22,393 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:24,432 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2023-10-05T14:41:24,432 bcftools/vcfmerge.c.pysam.c:860:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2023-10-05T14:41:24,432 860 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2023-10-05T14:41:24,432 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T14:41:24,433 In file included from /tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib/htslib/kstring.h:30, 2023-10-05T14:41:24,433 from /tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib/htslib/hts.h:37, 2023-10-05T14:41:24,433 from /tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib/htslib/vcf.h:39, 2023-10-05T14:41:24,433 from bcftools/vcfmerge.c.pysam.c:35: 2023-10-05T14:41:24,433 /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 2023-10-05T14:41:24,433 542 | extern void *calloc (size_t __nmemb, size_t __size) 2023-10-05T14:41:24,433 | ^~~~~~ 2023-10-05T14:41:33,091 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:41,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:41,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:42,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:44,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:45,891 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:46,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:50,743 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:52,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:52,884 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:53,237 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:41:55,055 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/gff.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-39/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-39/pysam/libcbcftools.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:41:58,158 Compiling pysam/libcutils.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T14:41:58,159 [1/1] Cythonizing pysam/libcutils.pyx 2023-10-05T14:41:58,159 building 'pysam.libcutils' extension 2023-10-05T14:41:58,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-39/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:42:14,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:42:14,634 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcutils.o build/temp.linux-armv7l-cpython-39/pysam/pysam_util.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcsamtools.cpython-39-arm-linux-gnueabihf -lcbcftools.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:42:18,063 warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:18,064 warning: pysam/libcalignmentfile.pyx:2579:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:18,065 warning: pysam/libcalignmentfile.pyx:2584:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:18,070 warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:18,071 warning: pysam/libcalignmentfile.pyx:2628:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:18,072 warning: pysam/libcalignmentfile.pyx:2633:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation 2023-10-05T14:42:19,230 Compiling pysam/libcalignmentfile.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:42:19,230 [1/1] Cythonizing pysam/libcalignmentfile.pyx 2023-10-05T14:42:19,231 building 'pysam.libcalignmentfile' extension 2023-10-05T14:42:19,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:43:57,222 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignmentfile.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:43:59,583 Compiling pysam/libcsamfile.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:43:59,583 [1/1] Cythonizing pysam/libcsamfile.pyx 2023-10-05T14:43:59,584 building 'pysam.libcsamfile' extension 2023-10-05T14:43:59,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:44:04,290 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcsamfile.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:44:06,729 warning: pysam/libcalignedsegment.pyx:760:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-10-05T14:44:06,729 warning: pysam/libcalignedsegment.pyx:760:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2023-10-05T14:44:10,923 Compiling pysam/libcalignedsegment.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:44:10,923 [1/1] Cythonizing pysam/libcalignedsegment.pyx 2023-10-05T14:44:10,923 building 'pysam.libcalignedsegment' extension 2023-10-05T14:44:10,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:45:58,269 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcalignedsegment.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:46:02,269 Compiling pysam/libctabix.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/unistd.pxd. 2023-10-05T14:46:02,269 [1/1] Cythonizing pysam/libctabix.pyx 2023-10-05T14:46:02,269 building 'pysam.libctabix' extension 2023-10-05T14:46:02,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:46:41,509 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabix.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:46:44,595 Compiling pysam/libcfaidx.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:46:44,595 [1/1] Cythonizing pysam/libcfaidx.pyx 2023-10-05T14:46:44,595 building 'pysam.libcfaidx' extension 2023-10-05T14:46:44,596 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:47:06,885 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcfaidx.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:47:15,253 Compiling pysam/libcbcf.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:47:15,254 [1/1] Cythonizing pysam/libcbcf.pyx 2023-10-05T14:47:15,254 building 'pysam.libcbcf' extension 2023-10-05T14:47:15,255 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:49:49,836 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbcf.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:49:52,750 Compiling pysam/libcbgzf.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:49:52,750 [1/1] Cythonizing pysam/libcbgzf.pyx 2023-10-05T14:49:52,751 building 'pysam.libcbgzf' extension 2023-10-05T14:49:52,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:50:04,089 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcbgzf.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:50:06,739 Compiling pysam/libctabixproxies.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-10-05T14:50:06,739 [1/1] Cythonizing pysam/libctabixproxies.pyx 2023-10-05T14:50:06,740 building 'pysam.libctabixproxies' extension 2023-10-05T14:50:06,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:50:41,847 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libctabixproxies.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:50:42,478 warning: pysam/libcvcf.pyx:1083:27: Unreachable code 2023-10-05T14:50:45,856 Compiling pysam/libcvcf.pyx because it depends on /tmp/pip-build-env-x53mgy7t/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd. 2023-10-05T14:50:45,856 [1/1] Cythonizing pysam/libcvcf.pyx 2023-10-05T14:50:45,856 building 'pysam.libcvcf' extension 2023-10-05T14:50:45,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/htslib -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/samtools/lz4 -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/bcftools -I/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -I/usr/include/python3.9 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2023-10-05T14:52:21,254 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2023-10-05T14:52:21,273 pysam/libcvcf.c:29577:16: warning: ‘__pyx_v_qual’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-10-05T14:52:21,273 29577 | __pyx_t_11 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 873, __pyx_L1_error) 2023-10-05T14:52:21,273 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-05T14:52:34,810 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pysam/libcvcf.o -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902/pysam -L/tmp/pip-wheel-78jv9a1e/pysam_178085d61eba415e93bb2d0ac7bbd902 -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -Lbuild/lib.linux-armv7l-cpython-39/pysam -L/usr/lib -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-39-arm-linux-gnueabihf -lcutils.cpython-39-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2023-10-05T14:52:35,523 installing to build/bdist.linux-armv7l/wheel 2023-10-05T14:52:35,523 running install 2023-10-05T14:52:35,551 running install_lib 2023-10-05T14:52:35,556 creating build/bdist.linux-armv7l 2023-10-05T14:52:35,557 creating build/bdist.linux-armv7l/wheel 2023-10-05T14:52:35,560 creating build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,561 copying build/lib.linux-armv7l-cpython-39/pysam/version.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,562 copying build/lib.linux-armv7l-cpython-39/pysam/py.typed -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,564 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,583 copying build/lib.linux-armv7l-cpython-39/pysam/csamtools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,585 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,587 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,592 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,605 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,607 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,609 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,668 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,710 copying build/lib.linux-armv7l-cpython-39/pysam/version.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,712 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,714 copying build/lib.linux-armv7l-cpython-39/pysam/utils.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,716 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,718 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,723 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,726 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,727 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,729 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,827 copying build/lib.linux-armv7l-cpython-39/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,829 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,831 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,857 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,941 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:35,969 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,038 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,044 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,046 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,048 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,050 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,052 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,054 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,128 copying build/lib.linux-armv7l-cpython-39/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,131 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,133 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,134 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,137 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,139 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,140 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,142 copying build/lib.linux-armv7l-cpython-39/pysam/libcbgzf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,156 copying build/lib.linux-armv7l-cpython-39/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,159 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,162 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,166 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,184 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,189 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,192 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,198 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,267 copying build/lib.linux-armv7l-cpython-39/pysam/config.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,269 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:36,271 creating build/bdist.linux-armv7l/wheel/pysam/include 2023-10-05T14:52:36,275 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,276 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,279 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,281 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,284 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,287 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,289 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,291 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,293 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,296 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,299 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,301 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,304 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,307 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,310 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,313 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/csq.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,318 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,320 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,322 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,325 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,327 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,329 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,331 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,333 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,336 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,338 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,341 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,344 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,346 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,348 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,350 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,352 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,356 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,359 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,361 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,364 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,367 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,369 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,371 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfview.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,374 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,377 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,379 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,381 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,387 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,391 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,394 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,399 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,401 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,403 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,405 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,443 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,445 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/em.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,448 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,450 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,452 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,455 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,457 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,459 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,461 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,464 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,468 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/README -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,470 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,471 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,474 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,476 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,478 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,482 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,484 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,487 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,489 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,491 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,494 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,497 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,500 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gff.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,504 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,506 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,509 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,513 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,515 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,517 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,520 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,524 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,525 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,527 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,529 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cols.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,531 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,533 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,535 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,538 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,541 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,544 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,548 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,550 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,557 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gff.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,559 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,561 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,564 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,566 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,568 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,570 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,572 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,575 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,577 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,579 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,581 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,585 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,587 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,590 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,592 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,594 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ccall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,596 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,600 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,602 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,604 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,606 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,609 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,611 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,613 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gff.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,615 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,617 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,619 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,623 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,625 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,628 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,633 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,636 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,638 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,640 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,645 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,647 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,649 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,651 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/ploidy.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,653 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/main.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,656 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,658 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,660 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,661 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/filter.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,666 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/convert.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,669 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,672 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,674 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/abuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,677 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/bin.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,679 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,681 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,684 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,685 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,687 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,689 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,692 copying build/lib.linux-armv7l-cpython-39/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2023-10-05T14:52:36,698 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,699 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,701 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,703 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_md.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,705 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,708 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam2depth.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,710 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,712 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,714 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,717 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,718 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,720 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,722 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_mate.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,725 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,727 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamtk.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,729 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,733 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cram_size.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,735 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,738 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,741 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/phase.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,743 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,746 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedcov.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,748 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_cat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,750 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,752 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_import.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,755 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_split.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,757 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,759 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,762 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,763 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamshuf.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,766 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,768 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,770 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,772 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,774 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,775 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,778 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,780 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_samples.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,782 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cut_target.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,784 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,787 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,789 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,792 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,793 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,796 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,797 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,799 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,802 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,806 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,807 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/README -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,810 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,812 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_stat.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,814 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,817 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,821 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,824 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_flags.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,825 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,829 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,831 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,833 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,836 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,840 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,843 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,846 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,848 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,850 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,853 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,855 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,857 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,859 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,862 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,865 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T14:52:36,865 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T14:52:36,868 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T14:52:36,871 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T14:52:36,874 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools/lz4 2023-10-05T14:52:36,876 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,878 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,881 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,883 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,887 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,890 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/padding.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,893 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,895 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,897 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,899 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,901 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,903 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_view.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,906 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,909 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,911 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,913 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/coverage.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,915 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reset.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,918 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/tmp_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,920 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,922 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,924 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,927 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,928 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,930 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,933 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,934 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,937 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,939 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,942 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,945 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/dict.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,947 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,950 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,952 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_aux.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,954 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,955 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,957 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/reference.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,960 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,962 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,964 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_color.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,967 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,969 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,973 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,979 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_opts.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,982 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,986 copying build/lib.linux-armv7l-cpython-39/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-armv7l/wheel/pysam/include/samtools 2023-10-05T14:52:36,989 copying build/lib.linux-armv7l-cpython-39/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/pysam/include 2023-10-05T14:52:36,993 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:36,994 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/md5.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:36,998 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:36,999 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,002 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,004 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,006 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,009 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,012 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,014 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,020 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,023 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,026 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,030 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,032 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,035 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,037 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,039 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,041 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,044 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/misc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,046 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,048 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,055 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,062 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,064 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,067 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,069 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,075 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,077 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/cram 2023-10-05T14:52:37,079 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,082 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,083 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/faidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,086 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htsfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,088 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bgzf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,092 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,094 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam_mods.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,096 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,098 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,100 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/Makefile -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,102 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/thread_pool.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,105 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/kfunc.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,107 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,109 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/header.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,113 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,115 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,120 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,122 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/version.sh -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,124 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,126 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/multipart.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,128 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/README -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,130 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/configure.ac -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,134 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,136 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/probaln.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,139 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T14:52:37,141 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os/rand.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T14:52:37,143 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/os 2023-10-05T14:52:37,145 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,148 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,152 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/plugin.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,155 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/textutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,157 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,161 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_s3_write.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,164 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,166 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/tabix.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,169 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs 2023-10-05T14:52:37,172 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,173 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,176 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,178 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,182 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,185 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,188 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,191 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,193 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,197 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,199 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,202 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,205 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,208 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,210 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,212 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,214 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,217 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,220 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,222 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,225 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,228 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,230 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,232 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,234 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,238 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,240 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,243 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,247 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,249 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,252 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,256 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,258 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,260 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,263 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,265 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htscodecs/htscodecs 2023-10-05T14:52:37,268 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib.mk -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,271 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bgzip.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,273 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.h.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,276 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcfutils.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,279 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,281 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,284 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_os.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,286 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,288 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,290 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,292 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,294 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,297 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,298 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,302 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,305 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,307 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,309 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,311 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,313 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,315 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,317 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,320 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,322 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,326 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,328 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,331 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,333 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,335 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,338 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,342 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,344 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,346 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,348 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,350 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,352 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2023-10-05T14:52:37,354 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,357 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,360 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/LICENSE -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,362 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/realn.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,364 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,366 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/region.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,368 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/regidx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,371 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/vcf.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,379 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,381 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T14:52:37,382 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T14:52:37,385 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T14:52:37,386 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T14:52:37,389 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-armv7l/wheel/pysam/include/htslib/m4 2023-10-05T14:52:37,391 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hts_expr.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,394 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/kstring.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,396 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/errmod.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,398 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/tbx.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,401 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/configure -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,409 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,412 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,414 copying build/lib.linux-armv7l-cpython-39/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/pysam/include/htslib 2023-10-05T14:52:37,416 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,418 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,469 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,471 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,473 copying build/lib.linux-armv7l-cpython-39/pysam/pysam_stream.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,475 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,489 copying build/lib.linux-armv7l-cpython-39/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,491 copying build/lib.linux-armv7l-cpython-39/pysam/libctabix.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,523 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,548 copying build/lib.linux-armv7l-cpython-39/pysam/htslib_util.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,550 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,552 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,554 copying build/lib.linux-armv7l-cpython-39/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,556 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,563 copying build/lib.linux-armv7l-cpython-39/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,565 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,587 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,626 copying build/lib.linux-armv7l-cpython-39/pysam/libcbcftools.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,632 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,693 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,695 copying build/lib.linux-armv7l-cpython-39/pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,753 copying build/lib.linux-armv7l-cpython-39/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,755 copying build/lib.linux-armv7l-cpython-39/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,757 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamtools.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,758 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,780 copying build/lib.linux-armv7l-cpython-39/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,783 copying build/lib.linux-armv7l-cpython-39/pysam/libcsamfile.c -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,795 copying build/lib.linux-armv7l-cpython-39/pysam/cbcftools_util.h -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,797 copying build/lib.linux-armv7l-cpython-39/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,800 copying build/lib.linux-armv7l-cpython-39/pysam/libcfaidx.pyx -> build/bdist.linux-armv7l/wheel/pysam 2023-10-05T14:52:37,803 running install_egg_info 2023-10-05T14:52:37,809 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/pysam-0.22.0-py3.9.egg-info 2023-10-05T14:52:37,823 running install_scripts 2023-10-05T14:52:37,889 creating build/bdist.linux-armv7l/wheel/pysam-0.22.0.dist-info/WHEEL 2023-10-05T14:52:37,892 creating '/tmp/pip-wheel-vplp1wq1/.tmp-32uld77w/pysam-0.22.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-05T14:52:37,897 adding 'pysam/Pileup.py' 2023-10-05T14:52:37,898 adding 'pysam/__init__.py' 2023-10-05T14:52:37,900 adding 'pysam/bcftools.py' 2023-10-05T14:52:37,901 adding 'pysam/cbcftools_util.h' 2023-10-05T14:52:37,902 adding 'pysam/config.py' 2023-10-05T14:52:37,903 adding 'pysam/csamtools_util.h' 2023-10-05T14:52:37,905 adding 'pysam/htslib_util.c' 2023-10-05T14:52:37,906 adding 'pysam/htslib_util.h' 2023-10-05T14:52:38,134 adding 'pysam/libcalignedsegment.c' 2023-10-05T14:52:38,809 adding 'pysam/libcalignedsegment.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:38,833 adding 'pysam/libcalignedsegment.pxd' 2023-10-05T14:52:38,835 adding 'pysam/libcalignedsegment.pyi' 2023-10-05T14:52:38,847 adding 'pysam/libcalignedsegment.pyx' 2023-10-05T14:52:39,024 adding 'pysam/libcalignmentfile.c' 2023-10-05T14:52:39,571 adding 'pysam/libcalignmentfile.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:39,591 adding 'pysam/libcalignmentfile.pxd' 2023-10-05T14:52:39,592 adding 'pysam/libcalignmentfile.pyi' 2023-10-05T14:52:39,604 adding 'pysam/libcalignmentfile.pyx' 2023-10-05T14:52:39,904 adding 'pysam/libcbcf.c' 2023-10-05T14:52:40,822 adding 'pysam/libcbcf.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:40,857 adding 'pysam/libcbcf.pxd' 2023-10-05T14:52:40,859 adding 'pysam/libcbcf.pyi' 2023-10-05T14:52:40,874 adding 'pysam/libcbcf.pyx' 2023-10-05T14:52:40,895 adding 'pysam/libcbcftools.c' 2023-10-05T14:52:41,853 adding 'pysam/libcbcftools.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:41,880 adding 'pysam/libcbcftools.pxd' 2023-10-05T14:52:41,882 adding 'pysam/libcbcftools.pyi' 2023-10-05T14:52:41,883 adding 'pysam/libcbcftools.pyx' 2023-10-05T14:52:41,930 adding 'pysam/libcbgzf.c' 2023-10-05T14:52:42,035 adding 'pysam/libcbgzf.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:42,039 adding 'pysam/libcbgzf.pyi' 2023-10-05T14:52:42,041 adding 'pysam/libcbgzf.pyx' 2023-10-05T14:52:42,117 adding 'pysam/libcfaidx.c' 2023-10-05T14:52:42,327 adding 'pysam/libcfaidx.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:42,335 adding 'pysam/libcfaidx.pxd' 2023-10-05T14:52:42,336 adding 'pysam/libcfaidx.pyi' 2023-10-05T14:52:42,339 adding 'pysam/libcfaidx.pyx' 2023-10-05T14:52:42,421 adding 'pysam/libchtslib.c' 2023-10-05T14:52:43,680 adding 'pysam/libchtslib.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:43,730 adding 'pysam/libchtslib.pxd' 2023-10-05T14:52:43,732 adding 'pysam/libchtslib.pyi' 2023-10-05T14:52:43,735 adding 'pysam/libchtslib.pyx' 2023-10-05T14:52:43,773 adding 'pysam/libcsamfile.c' 2023-10-05T14:52:43,830 adding 'pysam/libcsamfile.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:43,833 adding 'pysam/libcsamfile.pxd' 2023-10-05T14:52:43,834 adding 'pysam/libcsamfile.pyi' 2023-10-05T14:52:43,836 adding 'pysam/libcsamfile.pyx' 2023-10-05T14:52:43,856 adding 'pysam/libcsamtools.c' 2023-10-05T14:52:44,505 adding 'pysam/libcsamtools.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:44,524 adding 'pysam/libcsamtools.pxd' 2023-10-05T14:52:44,525 adding 'pysam/libcsamtools.pyi' 2023-10-05T14:52:44,526 adding 'pysam/libcsamtools.pyx' 2023-10-05T14:52:44,626 adding 'pysam/libctabix.c' 2023-10-05T14:52:44,906 adding 'pysam/libctabix.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:44,917 adding 'pysam/libctabix.pxd' 2023-10-05T14:52:44,919 adding 'pysam/libctabix.pyi' 2023-10-05T14:52:44,924 adding 'pysam/libctabix.pyx' 2023-10-05T14:52:45,025 adding 'pysam/libctabixproxies.c' 2023-10-05T14:52:45,319 adding 'pysam/libctabixproxies.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:45,329 adding 'pysam/libctabixproxies.pxd' 2023-10-05T14:52:45,331 adding 'pysam/libctabixproxies.pyi' 2023-10-05T14:52:45,334 adding 'pysam/libctabixproxies.pyx' 2023-10-05T14:52:45,389 adding 'pysam/libcutils.c' 2023-10-05T14:52:45,537 adding 'pysam/libcutils.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:45,543 adding 'pysam/libcutils.pxd' 2023-10-05T14:52:45,544 adding 'pysam/libcutils.pyi' 2023-10-05T14:52:45,546 adding 'pysam/libcutils.pyx' 2023-10-05T14:52:45,696 adding 'pysam/libcvcf.c' 2023-10-05T14:52:46,256 adding 'pysam/libcvcf.cpython-39-arm-linux-gnueabihf.so' 2023-10-05T14:52:46,274 adding 'pysam/libcvcf.pxd' 2023-10-05T14:52:46,276 adding 'pysam/libcvcf.pyi' 2023-10-05T14:52:46,282 adding 'pysam/libcvcf.pyx' 2023-10-05T14:52:46,283 adding 'pysam/py.typed' 2023-10-05T14:52:46,285 adding 'pysam/pysam_stream.h' 2023-10-05T14:52:46,286 adding 'pysam/pysam_util.c' 2023-10-05T14:52:46,287 adding 'pysam/pysam_util.h' 2023-10-05T14:52:46,289 adding 'pysam/samtools.py' 2023-10-05T14:52:46,290 adding 'pysam/utils.py' 2023-10-05T14:52:46,292 adding 'pysam/version.h' 2023-10-05T14:52:46,293 adding 'pysam/version.py' 2023-10-05T14:52:46,294 adding 'pysam/version.pyi' 2023-10-05T14:52:46,296 adding 'pysam/include/__init__.py' 2023-10-05T14:52:46,302 adding 'pysam/include/bcftools/HMM.c' 2023-10-05T14:52:46,304 adding 'pysam/include/bcftools/HMM.c.pysam.c' 2023-10-05T14:52:46,306 adding 'pysam/include/bcftools/HMM.h' 2023-10-05T14:52:46,313 adding 'pysam/include/bcftools/LICENSE' 2023-10-05T14:52:46,314 adding 'pysam/include/bcftools/README' 2023-10-05T14:52:46,318 adding 'pysam/include/bcftools/abuf.c' 2023-10-05T14:52:46,322 adding 'pysam/include/bcftools/abuf.c.pysam.c' 2023-10-05T14:52:46,324 adding 'pysam/include/bcftools/abuf.h' 2023-10-05T14:52:46,329 adding 'pysam/include/bcftools/bam2bcf.c' 2023-10-05T14:52:46,335 adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' 2023-10-05T14:52:46,338 adding 'pysam/include/bcftools/bam2bcf.h' 2023-10-05T14:52:46,342 adding 'pysam/include/bcftools/bam2bcf_iaux.c' 2023-10-05T14:52:46,346 adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' 2023-10-05T14:52:46,351 adding 'pysam/include/bcftools/bam2bcf_indel.c' 2023-10-05T14:52:46,356 adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' 2023-10-05T14:52:46,358 adding 'pysam/include/bcftools/bam_sample.c' 2023-10-05T14:52:46,360 adding 'pysam/include/bcftools/bam_sample.c.pysam.c' 2023-10-05T14:52:46,362 adding 'pysam/include/bcftools/bam_sample.h' 2023-10-05T14:52:46,363 adding 'pysam/include/bcftools/bcftools.h' 2023-10-05T14:52:46,365 adding 'pysam/include/bcftools/bcftools.pysam.c' 2023-10-05T14:52:46,366 adding 'pysam/include/bcftools/bcftools.pysam.h' 2023-10-05T14:52:46,367 adding 'pysam/include/bcftools/bin.c' 2023-10-05T14:52:46,369 adding 'pysam/include/bcftools/bin.c.pysam.c' 2023-10-05T14:52:46,370 adding 'pysam/include/bcftools/bin.h' 2023-10-05T14:52:46,372 adding 'pysam/include/bcftools/call.h' 2023-10-05T14:52:46,374 adding 'pysam/include/bcftools/ccall.c' 2023-10-05T14:52:46,376 adding 'pysam/include/bcftools/ccall.c.pysam.c' 2023-10-05T14:52:46,378 adding 'pysam/include/bcftools/cigar_state.h' 2023-10-05T14:52:46,379 adding 'pysam/include/bcftools/cols.c' 2023-10-05T14:52:46,381 adding 'pysam/include/bcftools/cols.c.pysam.c' 2023-10-05T14:52:46,382 adding 'pysam/include/bcftools/cols.h' 2023-10-05T14:52:46,383 adding 'pysam/include/bcftools/config.h' 2023-10-05T14:52:46,389 adding 'pysam/include/bcftools/consensus.c' 2023-10-05T14:52:46,395 adding 'pysam/include/bcftools/consensus.c.pysam.c' 2023-10-05T14:52:46,402 adding 'pysam/include/bcftools/convert.c' 2023-10-05T14:52:46,409 adding 'pysam/include/bcftools/convert.c.pysam.c' 2023-10-05T14:52:46,411 adding 'pysam/include/bcftools/convert.h' 2023-10-05T14:52:46,426 adding 'pysam/include/bcftools/csq.c' 2023-10-05T14:52:46,442 adding 'pysam/include/bcftools/csq.c.pysam.c' 2023-10-05T14:52:46,445 adding 'pysam/include/bcftools/dbuf.h' 2023-10-05T14:52:46,446 adding 'pysam/include/bcftools/dist.c' 2023-10-05T14:52:46,447 adding 'pysam/include/bcftools/dist.c.pysam.c' 2023-10-05T14:52:46,449 adding 'pysam/include/bcftools/dist.h' 2023-10-05T14:52:46,451 adding 'pysam/include/bcftools/em.c' 2023-10-05T14:52:46,453 adding 'pysam/include/bcftools/em.c.pysam.c' 2023-10-05T14:52:46,454 adding 'pysam/include/bcftools/extsort.c' 2023-10-05T14:52:46,456 adding 'pysam/include/bcftools/extsort.c.pysam.c' 2023-10-05T14:52:46,457 adding 'pysam/include/bcftools/extsort.h' 2023-10-05T14:52:46,471 adding 'pysam/include/bcftools/filter.c' 2023-10-05T14:52:46,486 adding 'pysam/include/bcftools/filter.c.pysam.c' 2023-10-05T14:52:46,488 adding 'pysam/include/bcftools/filter.h' 2023-10-05T14:52:46,493 adding 'pysam/include/bcftools/gff.c' 2023-10-05T14:52:46,498 adding 'pysam/include/bcftools/gff.c.pysam.c' 2023-10-05T14:52:46,501 adding 'pysam/include/bcftools/gff.h' 2023-10-05T14:52:46,503 adding 'pysam/include/bcftools/gvcf.c' 2023-10-05T14:52:46,504 adding 'pysam/include/bcftools/gvcf.c.pysam.c' 2023-10-05T14:52:46,506 adding 'pysam/include/bcftools/gvcf.h' 2023-10-05T14:52:46,508 adding 'pysam/include/bcftools/hclust.c' 2023-10-05T14:52:46,510 adding 'pysam/include/bcftools/hclust.c.pysam.c' 2023-10-05T14:52:46,512 adding 'pysam/include/bcftools/hclust.h' 2023-10-05T14:52:46,513 adding 'pysam/include/bcftools/hex.h' 2023-10-05T14:52:46,514 adding 'pysam/include/bcftools/khash_str2str.h' 2023-10-05T14:52:46,516 adding 'pysam/include/bcftools/kheap.h' 2023-10-05T14:52:46,518 adding 'pysam/include/bcftools/kmin.c' 2023-10-05T14:52:46,520 adding 'pysam/include/bcftools/kmin.c.pysam.c' 2023-10-05T14:52:46,521 adding 'pysam/include/bcftools/kmin.h' 2023-10-05T14:52:46,523 adding 'pysam/include/bcftools/main.c' 2023-10-05T14:52:46,525 adding 'pysam/include/bcftools/main.c.pysam.c' 2023-10-05T14:52:46,532 adding 'pysam/include/bcftools/mcall.c' 2023-10-05T14:52:46,540 adding 'pysam/include/bcftools/mcall.c.pysam.c' 2023-10-05T14:52:46,549 adding 'pysam/include/bcftools/mpileup.c' 2023-10-05T14:52:46,557 adding 'pysam/include/bcftools/mpileup.c.pysam.c' 2023-10-05T14:52:46,561 adding 'pysam/include/bcftools/mw.h' 2023-10-05T14:52:46,563 adding 'pysam/include/bcftools/ploidy.c' 2023-10-05T14:52:46,565 adding 'pysam/include/bcftools/ploidy.c.pysam.c' 2023-10-05T14:52:46,566 adding 'pysam/include/bcftools/ploidy.h' 2023-10-05T14:52:46,569 adding 'pysam/include/bcftools/prob1.c' 2023-10-05T14:52:46,572 adding 'pysam/include/bcftools/prob1.c.pysam.c' 2023-10-05T14:52:46,574 adding 'pysam/include/bcftools/prob1.h' 2023-10-05T14:52:46,575 adding 'pysam/include/bcftools/rbuf.h' 2023-10-05T14:52:46,579 adding 'pysam/include/bcftools/read_consensus.c' 2023-10-05T14:52:46,583 adding 'pysam/include/bcftools/read_consensus.c.pysam.c' 2023-10-05T14:52:46,585 adding 'pysam/include/bcftools/read_consensus.h' 2023-10-05T14:52:46,587 adding 'pysam/include/bcftools/regidx.c' 2023-10-05T14:52:46,590 adding 'pysam/include/bcftools/regidx.c.pysam.c' 2023-10-05T14:52:46,592 adding 'pysam/include/bcftools/regidx.h' 2023-10-05T14:52:46,595 adding 'pysam/include/bcftools/reheader.c' 2023-10-05T14:52:46,599 adding 'pysam/include/bcftools/reheader.c.pysam.c' 2023-10-05T14:52:46,600 adding 'pysam/include/bcftools/smpl_ilist.c' 2023-10-05T14:52:46,602 adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' 2023-10-05T14:52:46,603 adding 'pysam/include/bcftools/smpl_ilist.h' 2023-10-05T14:52:46,605 adding 'pysam/include/bcftools/str_finder.c' 2023-10-05T14:52:46,607 adding 'pysam/include/bcftools/str_finder.c.pysam.c' 2023-10-05T14:52:46,608 adding 'pysam/include/bcftools/str_finder.h' 2023-10-05T14:52:46,610 adding 'pysam/include/bcftools/tabix.c' 2023-10-05T14:52:46,611 adding 'pysam/include/bcftools/tabix.c.pysam.c' 2023-10-05T14:52:46,613 adding 'pysam/include/bcftools/tsv2vcf.c' 2023-10-05T14:52:46,614 adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' 2023-10-05T14:52:46,616 adding 'pysam/include/bcftools/tsv2vcf.h' 2023-10-05T14:52:46,619 adding 'pysam/include/bcftools/utlist.h' 2023-10-05T14:52:46,622 adding 'pysam/include/bcftools/variantkey.h' 2023-10-05T14:52:46,637 adding 'pysam/include/bcftools/vcfannotate.c' 2023-10-05T14:52:46,653 adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' 2023-10-05T14:52:46,657 adding 'pysam/include/bcftools/vcfbuf.c' 2023-10-05T14:52:46,659 adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' 2023-10-05T14:52:46,661 adding 'pysam/include/bcftools/vcfbuf.h' 2023-10-05T14:52:46,667 adding 'pysam/include/bcftools/vcfcall.c' 2023-10-05T14:52:46,673 adding 'pysam/include/bcftools/vcfcall.c.pysam.c' 2023-10-05T14:52:46,679 adding 'pysam/include/bcftools/vcfcnv.c' 2023-10-05T14:52:46,685 adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' 2023-10-05T14:52:46,691 adding 'pysam/include/bcftools/vcfconcat.c' 2023-10-05T14:52:46,697 adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' 2023-10-05T14:52:46,704 adding 'pysam/include/bcftools/vcfconvert.c' 2023-10-05T14:52:46,712 adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' 2023-10-05T14:52:46,716 adding 'pysam/include/bcftools/vcffilter.c' 2023-10-05T14:52:46,720 adding 'pysam/include/bcftools/vcffilter.c.pysam.c' 2023-10-05T14:52:46,726 adding 'pysam/include/bcftools/vcfgtcheck.c' 2023-10-05T14:52:46,732 adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' 2023-10-05T14:52:46,734 adding 'pysam/include/bcftools/vcfhead.c' 2023-10-05T14:52:46,735 adding 'pysam/include/bcftools/vcfhead.c.pysam.c' 2023-10-05T14:52:46,737 adding 'pysam/include/bcftools/vcfindex.c' 2023-10-05T14:52:46,739 adding 'pysam/include/bcftools/vcfindex.c.pysam.c' 2023-10-05T14:52:46,743 adding 'pysam/include/bcftools/vcfisec.c' 2023-10-05T14:52:46,746 adding 'pysam/include/bcftools/vcfisec.c.pysam.c' 2023-10-05T14:52:46,762 adding 'pysam/include/bcftools/vcfmerge.c' 2023-10-05T14:52:46,779 adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' 2023-10-05T14:52:46,790 adding 'pysam/include/bcftools/vcfnorm.c' 2023-10-05T14:52:46,801 adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' 2023-10-05T14:52:46,805 adding 'pysam/include/bcftools/vcfplugin.c' 2023-10-05T14:52:46,809 adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' 2023-10-05T14:52:46,812 adding 'pysam/include/bcftools/vcfquery.c' 2023-10-05T14:52:46,814 adding 'pysam/include/bcftools/vcfquery.c.pysam.c' 2023-10-05T14:52:46,820 adding 'pysam/include/bcftools/vcfroh.c' 2023-10-05T14:52:46,826 adding 'pysam/include/bcftools/vcfroh.c.pysam.c' 2023-10-05T14:52:46,829 adding 'pysam/include/bcftools/vcfsom.c' 2023-10-05T14:52:46,833 adding 'pysam/include/bcftools/vcfsom.c.pysam.c' 2023-10-05T14:52:46,835 adding 'pysam/include/bcftools/vcfsort.c' 2023-10-05T14:52:46,837 adding 'pysam/include/bcftools/vcfsort.c.pysam.c' 2023-10-05T14:52:46,846 adding 'pysam/include/bcftools/vcfstats.c' 2023-10-05T14:52:46,856 adding 'pysam/include/bcftools/vcfstats.c.pysam.c' 2023-10-05T14:52:46,860 adding 'pysam/include/bcftools/vcfview.c' 2023-10-05T14:52:46,865 adding 'pysam/include/bcftools/vcfview.c.pysam.c' 2023-10-05T14:52:46,867 adding 'pysam/include/bcftools/vcmp.c' 2023-10-05T14:52:46,868 adding 'pysam/include/bcftools/vcmp.c.pysam.c' 2023-10-05T14:52:46,870 adding 'pysam/include/bcftools/vcmp.h' 2023-10-05T14:52:46,871 adding 'pysam/include/bcftools/version.c' 2023-10-05T14:52:46,873 adding 'pysam/include/bcftools/version.c.pysam.c' 2023-10-05T14:52:46,874 adding 'pysam/include/bcftools/version.sh' 2023-10-05T14:52:46,877 adding 'pysam/include/htslib/LICENSE' 2023-10-05T14:52:46,882 adding 'pysam/include/htslib/Makefile' 2023-10-05T14:52:46,884 adding 'pysam/include/htslib/README' 2023-10-05T14:52:46,887 adding 'pysam/include/htslib/bcf_sr_sort.c' 2023-10-05T14:52:46,889 adding 'pysam/include/htslib/bcf_sr_sort.h' 2023-10-05T14:52:46,898 adding 'pysam/include/htslib/bgzf.c' 2023-10-05T14:52:46,902 adding 'pysam/include/htslib/bgzip.c' 2023-10-05T14:52:46,903 adding 'pysam/include/htslib/builddir_vars.mk.in' 2023-10-05T14:52:46,905 adding 'pysam/include/htslib/config.h' 2023-10-05T14:52:46,906 adding 'pysam/include/htslib/config.h.in' 2023-10-05T14:52:46,907 adding 'pysam/include/htslib/config.mk.in' 2023-10-05T14:52:46,929 adding 'pysam/include/htslib/configure' 2023-10-05T14:52:46,934 adding 'pysam/include/htslib/configure.ac' 2023-10-05T14:52:46,936 adding 'pysam/include/htslib/errmod.c' 2023-10-05T14:52:46,939 adding 'pysam/include/htslib/faidx.c' 2023-10-05T14:52:46,948 adding 'pysam/include/htslib/header.c' 2023-10-05T14:52:46,951 adding 'pysam/include/htslib/header.h' 2023-10-05T14:52:46,956 adding 'pysam/include/htslib/hfile.c' 2023-10-05T14:52:46,958 adding 'pysam/include/htslib/hfile_gcs.c' 2023-10-05T14:52:46,960 adding 'pysam/include/htslib/hfile_internal.h' 2023-10-05T14:52:46,966 adding 'pysam/include/htslib/hfile_libcurl.c' 2023-10-05T14:52:46,971 adding 'pysam/include/htslib/hfile_s3.c' 2023-10-05T14:52:46,974 adding 'pysam/include/htslib/hfile_s3_write.c' 2023-10-05T14:52:46,993 adding 'pysam/include/htslib/hts.c' 2023-10-05T14:52:46,997 adding 'pysam/include/htslib/hts_expr.c' 2023-10-05T14:52:46,998 adding 'pysam/include/htslib/hts_internal.h' 2023-10-05T14:52:47,000 adding 'pysam/include/htslib/hts_os.c' 2023-10-05T14:52:47,001 adding 'pysam/include/htslib/hts_time_funcs.h' 2023-10-05T14:52:47,003 adding 'pysam/include/htslib/htscodecs_bundled.mk' 2023-10-05T14:52:47,004 adding 'pysam/include/htslib/htscodecs_external.mk' 2023-10-05T14:52:47,006 adding 'pysam/include/htslib/htsfile.c' 2023-10-05T14:52:47,008 adding 'pysam/include/htslib/htslib.mk' 2023-10-05T14:52:47,009 adding 'pysam/include/htslib/htslib.pc.in' 2023-10-05T14:52:47,010 adding 'pysam/include/htslib/htslib_vars.mk' 2023-10-05T14:52:47,012 adding 'pysam/include/htslib/kfunc.c' 2023-10-05T14:52:47,015 adding 'pysam/include/htslib/kstring.c' 2023-10-05T14:52:47,017 adding 'pysam/include/htslib/md5.c' 2023-10-05T14:52:47,019 adding 'pysam/include/htslib/multipart.c' 2023-10-05T14:52:47,020 adding 'pysam/include/htslib/plugin.c' 2023-10-05T14:52:47,023 adding 'pysam/include/htslib/probaln.c' 2023-10-05T14:52:47,025 adding 'pysam/include/htslib/realn.c' 2023-10-05T14:52:47,028 adding 'pysam/include/htslib/regidx.c' 2023-10-05T14:52:47,030 adding 'pysam/include/htslib/region.c' 2023-10-05T14:52:47,052 adding 'pysam/include/htslib/sam.c' 2023-10-05T14:52:47,055 adding 'pysam/include/htslib/sam_internal.h' 2023-10-05T14:52:47,058 adding 'pysam/include/htslib/sam_mods.c' 2023-10-05T14:52:47,064 adding 'pysam/include/htslib/synced_bcf_reader.c' 2023-10-05T14:52:47,068 adding 'pysam/include/htslib/tabix.c' 2023-10-05T14:52:47,070 adding 'pysam/include/htslib/tbx.c' 2023-10-05T14:52:47,072 adding 'pysam/include/htslib/textutils.c' 2023-10-05T14:52:47,075 adding 'pysam/include/htslib/textutils_internal.h' 2023-10-05T14:52:47,080 adding 'pysam/include/htslib/thread_pool.c' 2023-10-05T14:52:47,082 adding 'pysam/include/htslib/thread_pool_internal.h' 2023-10-05T14:52:47,103 adding 'pysam/include/htslib/vcf.c' 2023-10-05T14:52:47,106 adding 'pysam/include/htslib/vcf_sweep.c' 2023-10-05T14:52:47,109 adding 'pysam/include/htslib/vcfutils.c' 2023-10-05T14:52:47,111 adding 'pysam/include/htslib/version.sh' 2023-10-05T14:52:47,113 adding 'pysam/include/htslib/cram/cram.h' 2023-10-05T14:52:47,125 adding 'pysam/include/htslib/cram/cram_codecs.c' 2023-10-05T14:52:47,128 adding 'pysam/include/htslib/cram/cram_codecs.h' 2023-10-05T14:52:47,140 adding 'pysam/include/htslib/cram/cram_decode.c' 2023-10-05T14:52:47,142 adding 'pysam/include/htslib/cram/cram_decode.h' 2023-10-05T14:52:47,157 adding 'pysam/include/htslib/cram/cram_encode.c' 2023-10-05T14:52:47,159 adding 'pysam/include/htslib/cram/cram_encode.h' 2023-10-05T14:52:47,163 adding 'pysam/include/htslib/cram/cram_external.c' 2023-10-05T14:52:47,166 adding 'pysam/include/htslib/cram/cram_index.c' 2023-10-05T14:52:47,168 adding 'pysam/include/htslib/cram/cram_index.h' 2023-10-05T14:52:47,187 adding 'pysam/include/htslib/cram/cram_io.c' 2023-10-05T14:52:47,191 adding 'pysam/include/htslib/cram/cram_io.h' 2023-10-05T14:52:47,192 adding 'pysam/include/htslib/cram/cram_samtools.h' 2023-10-05T14:52:47,194 adding 'pysam/include/htslib/cram/cram_stats.c' 2023-10-05T14:52:47,196 adding 'pysam/include/htslib/cram/cram_stats.h' 2023-10-05T14:52:47,200 adding 'pysam/include/htslib/cram/cram_structs.h' 2023-10-05T14:52:47,202 adding 'pysam/include/htslib/cram/mFILE.c' 2023-10-05T14:52:47,204 adding 'pysam/include/htslib/cram/mFILE.h' 2023-10-05T14:52:47,205 adding 'pysam/include/htslib/cram/misc.h' 2023-10-05T14:52:47,208 adding 'pysam/include/htslib/cram/open_trace_file.c' 2023-10-05T14:52:47,209 adding 'pysam/include/htslib/cram/open_trace_file.h' 2023-10-05T14:52:47,211 adding 'pysam/include/htslib/cram/os.h' 2023-10-05T14:52:47,213 adding 'pysam/include/htslib/cram/pooled_alloc.c' 2023-10-05T14:52:47,214 adding 'pysam/include/htslib/cram/pooled_alloc.h' 2023-10-05T14:52:47,216 adding 'pysam/include/htslib/cram/string_alloc.c' 2023-10-05T14:52:47,217 adding 'pysam/include/htslib/cram/string_alloc.h' 2023-10-05T14:52:47,223 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' 2023-10-05T14:52:47,224 adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' 2023-10-05T14:52:47,226 adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' 2023-10-05T14:52:47,228 adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' 2023-10-05T14:52:47,234 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' 2023-10-05T14:52:47,236 adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' 2023-10-05T14:52:47,237 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' 2023-10-05T14:52:47,238 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' 2023-10-05T14:52:47,240 adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' 2023-10-05T14:52:47,242 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' 2023-10-05T14:52:47,243 adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' 2023-10-05T14:52:47,246 adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' 2023-10-05T14:52:47,247 adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' 2023-10-05T14:52:47,250 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' 2023-10-05T14:52:47,253 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' 2023-10-05T14:52:47,255 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' 2023-10-05T14:52:47,258 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' 2023-10-05T14:52:47,261 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' 2023-10-05T14:52:47,263 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' 2023-10-05T14:52:47,268 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' 2023-10-05T14:52:47,273 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' 2023-10-05T14:52:47,280 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' 2023-10-05T14:52:47,286 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c' 2023-10-05T14:52:47,288 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h' 2023-10-05T14:52:47,294 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c' 2023-10-05T14:52:47,296 adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_word.h' 2023-10-05T14:52:47,298 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.c' 2023-10-05T14:52:47,300 adding 'pysam/include/htslib/htscodecs/htscodecs/rle.h' 2023-10-05T14:52:47,306 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c' 2023-10-05T14:52:47,308 adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h' 2023-10-05T14:52:47,310 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.c' 2023-10-05T14:52:47,312 adding 'pysam/include/htslib/htscodecs/htscodecs/utils.h' 2023-10-05T14:52:47,314 adding 'pysam/include/htslib/htscodecs/htscodecs/varint.h' 2023-10-05T14:52:47,316 adding 'pysam/include/htslib/htscodecs/htscodecs/varint2.h' 2023-10-05T14:52:47,317 adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' 2023-10-05T14:52:47,320 adding 'pysam/include/htslib/htslib/bgzf.h' 2023-10-05T14:52:47,324 adding 'pysam/include/htslib/htslib/cram.h' 2023-10-05T14:52:47,326 adding 'pysam/include/htslib/htslib/faidx.h' 2023-10-05T14:52:47,328 adding 'pysam/include/htslib/htslib/hfile.h' 2023-10-05T14:52:47,337 adding 'pysam/include/htslib/htslib/hts.h' 2023-10-05T14:52:47,338 adding 'pysam/include/htslib/htslib/hts_defs.h' 2023-10-05T14:52:47,340 adding 'pysam/include/htslib/htslib/hts_endian.h' 2023-10-05T14:52:47,342 adding 'pysam/include/htslib/htslib/hts_expr.h' 2023-10-05T14:52:47,344 adding 'pysam/include/htslib/htslib/hts_log.h' 2023-10-05T14:52:47,345 adding 'pysam/include/htslib/htslib/hts_os.h' 2023-10-05T14:52:47,347 adding 'pysam/include/htslib/htslib/kbitset.h' 2023-10-05T14:52:47,348 adding 'pysam/include/htslib/htslib/kfunc.h' 2023-10-05T14:52:47,351 adding 'pysam/include/htslib/htslib/khash.h' 2023-10-05T14:52:47,353 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2023-10-05T14:52:47,354 adding 'pysam/include/htslib/htslib/klist.h' 2023-10-05T14:52:47,356 adding 'pysam/include/htslib/htslib/knetfile.h' 2023-10-05T14:52:47,358 adding 'pysam/include/htslib/htslib/kroundup.h' 2023-10-05T14:52:47,359 adding 'pysam/include/htslib/htslib/kseq.h' 2023-10-05T14:52:47,362 adding 'pysam/include/htslib/htslib/ksort.h' 2023-10-05T14:52:47,364 adding 'pysam/include/htslib/htslib/kstring.h' 2023-10-05T14:52:47,366 adding 'pysam/include/htslib/htslib/regidx.h' 2023-10-05T14:52:47,377 adding 'pysam/include/htslib/htslib/sam.h' 2023-10-05T14:52:47,381 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2023-10-05T14:52:47,382 adding 'pysam/include/htslib/htslib/tbx.h' 2023-10-05T14:52:47,385 adding 'pysam/include/htslib/htslib/thread_pool.h' 2023-10-05T14:52:47,394 adding 'pysam/include/htslib/htslib/vcf.h' 2023-10-05T14:52:47,395 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2023-10-05T14:52:47,397 adding 'pysam/include/htslib/htslib/vcfutils.h' 2023-10-05T14:52:47,399 adding 'pysam/include/htslib/m4/hts_check_compile_flags_needed.m4' 2023-10-05T14:52:47,400 adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' 2023-10-05T14:52:47,402 adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' 2023-10-05T14:52:47,404 adding 'pysam/include/htslib/m4/pkg.m4' 2023-10-05T14:52:47,406 adding 'pysam/include/htslib/os/lzma_stub.h' 2023-10-05T14:52:47,408 adding 'pysam/include/htslib/os/rand.c' 2023-10-05T14:52:47,412 adding 'pysam/include/samtools/LICENSE' 2023-10-05T14:52:47,413 adding 'pysam/include/samtools/README' 2023-10-05T14:52:47,420 adding 'pysam/include/samtools/amplicon_stats.c' 2023-10-05T14:52:47,428 adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' 2023-10-05T14:52:47,431 adding 'pysam/include/samtools/bam.c' 2023-10-05T14:52:47,432 adding 'pysam/include/samtools/bam.c.pysam.c' 2023-10-05T14:52:47,434 adding 'pysam/include/samtools/bam.h' 2023-10-05T14:52:47,438 adding 'pysam/include/samtools/bam2depth.c' 2023-10-05T14:52:47,442 adding 'pysam/include/samtools/bam2depth.c.pysam.c' 2023-10-05T14:52:47,445 adding 'pysam/include/samtools/bam_addrprg.c' 2023-10-05T14:52:47,447 adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' 2023-10-05T14:52:47,451 adding 'pysam/include/samtools/bam_ampliconclip.c' 2023-10-05T14:52:47,455 adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' 2023-10-05T14:52:47,457 adding 'pysam/include/samtools/bam_ampliconclip.h' 2023-10-05T14:52:47,458 adding 'pysam/include/samtools/bam_aux.c' 2023-10-05T14:52:47,460 adding 'pysam/include/samtools/bam_aux.c.pysam.c' 2023-10-05T14:52:47,462 adding 'pysam/include/samtools/bam_cat.c' 2023-10-05T14:52:47,465 adding 'pysam/include/samtools/bam_cat.c.pysam.c' 2023-10-05T14:52:47,467 adding 'pysam/include/samtools/bam_color.c' 2023-10-05T14:52:47,468 adding 'pysam/include/samtools/bam_color.c.pysam.c' 2023-10-05T14:52:47,480 adding 'pysam/include/samtools/bam_consensus.c' 2023-10-05T14:52:47,493 adding 'pysam/include/samtools/bam_consensus.c.pysam.c' 2023-10-05T14:52:47,497 adding 'pysam/include/samtools/bam_fastq.c' 2023-10-05T14:52:47,502 adding 'pysam/include/samtools/bam_fastq.c.pysam.c' 2023-10-05T14:52:47,503 adding 'pysam/include/samtools/bam_flags.c' 2023-10-05T14:52:47,505 adding 'pysam/include/samtools/bam_flags.c.pysam.c' 2023-10-05T14:52:47,507 adding 'pysam/include/samtools/bam_import.c' 2023-10-05T14:52:47,510 adding 'pysam/include/samtools/bam_import.c.pysam.c' 2023-10-05T14:52:47,512 adding 'pysam/include/samtools/bam_index.c' 2023-10-05T14:52:47,514 adding 'pysam/include/samtools/bam_index.c.pysam.c' 2023-10-05T14:52:47,516 adding 'pysam/include/samtools/bam_lpileup.c' 2023-10-05T14:52:47,517 adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' 2023-10-05T14:52:47,519 adding 'pysam/include/samtools/bam_lpileup.h' 2023-10-05T14:52:47,528 adding 'pysam/include/samtools/bam_markdup.c' 2023-10-05T14:52:47,537 adding 'pysam/include/samtools/bam_markdup.c.pysam.c' 2023-10-05T14:52:47,541 adding 'pysam/include/samtools/bam_mate.c' 2023-10-05T14:52:47,545 adding 'pysam/include/samtools/bam_mate.c.pysam.c' 2023-10-05T14:52:47,547 adding 'pysam/include/samtools/bam_md.c' 2023-10-05T14:52:47,550 adding 'pysam/include/samtools/bam_md.c.pysam.c' 2023-10-05T14:52:47,552 adding 'pysam/include/samtools/bam_plbuf.c' 2023-10-05T14:52:47,553 adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' 2023-10-05T14:52:47,554 adding 'pysam/include/samtools/bam_plbuf.h' 2023-10-05T14:52:47,560 adding 'pysam/include/samtools/bam_plcmd.c' 2023-10-05T14:52:47,565 adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' 2023-10-05T14:52:47,567 adding 'pysam/include/samtools/bam_quickcheck.c' 2023-10-05T14:52:47,569 adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' 2023-10-05T14:52:47,571 adding 'pysam/include/samtools/bam_reheader.c' 2023-10-05T14:52:47,574 adding 'pysam/include/samtools/bam_reheader.c.pysam.c' 2023-10-05T14:52:47,576 adding 'pysam/include/samtools/bam_rmdup.c' 2023-10-05T14:52:47,578 adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' 2023-10-05T14:52:47,580 adding 'pysam/include/samtools/bam_rmdupse.c' 2023-10-05T14:52:47,582 adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' 2023-10-05T14:52:47,584 adding 'pysam/include/samtools/bam_samples.c' 2023-10-05T14:52:47,586 adding 'pysam/include/samtools/bam_samples.c.pysam.c' 2023-10-05T14:52:47,602 adding 'pysam/include/samtools/bam_sort.c' 2023-10-05T14:52:47,619 adding 'pysam/include/samtools/bam_sort.c.pysam.c' 2023-10-05T14:52:47,622 adding 'pysam/include/samtools/bam_split.c' 2023-10-05T14:52:47,625 adding 'pysam/include/samtools/bam_split.c.pysam.c' 2023-10-05T14:52:47,627 adding 'pysam/include/samtools/bam_stat.c' 2023-10-05T14:52:47,629 adding 'pysam/include/samtools/bam_stat.c.pysam.c' 2023-10-05T14:52:47,632 adding 'pysam/include/samtools/bamshuf.c' 2023-10-05T14:52:47,635 adding 'pysam/include/samtools/bamshuf.c.pysam.c' 2023-10-05T14:52:47,637 adding 'pysam/include/samtools/bamtk.c' 2023-10-05T14:52:47,639 adding 'pysam/include/samtools/bamtk.c.pysam.c' 2023-10-05T14:52:47,642 adding 'pysam/include/samtools/bedcov.c' 2023-10-05T14:52:47,644 adding 'pysam/include/samtools/bedcov.c.pysam.c' 2023-10-05T14:52:47,646 adding 'pysam/include/samtools/bedidx.c' 2023-10-05T14:52:47,649 adding 'pysam/include/samtools/bedidx.c.pysam.c' 2023-10-05T14:52:47,651 adding 'pysam/include/samtools/bedidx.h' 2023-10-05T14:52:47,652 adding 'pysam/include/samtools/config.h' 2023-10-05T14:52:47,655 adding 'pysam/include/samtools/consensus_pileup.c' 2023-10-05T14:52:47,657 adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' 2023-10-05T14:52:47,659 adding 'pysam/include/samtools/consensus_pileup.h' 2023-10-05T14:52:47,662 adding 'pysam/include/samtools/coverage.c' 2023-10-05T14:52:47,666 adding 'pysam/include/samtools/coverage.c.pysam.c' 2023-10-05T14:52:47,669 adding 'pysam/include/samtools/cram_size.c' 2023-10-05T14:52:47,672 adding 'pysam/include/samtools/cram_size.c.pysam.c' 2023-10-05T14:52:47,674 adding 'pysam/include/samtools/cut_target.c' 2023-10-05T14:52:47,676 adding 'pysam/include/samtools/cut_target.c.pysam.c' 2023-10-05T14:52:47,678 adding 'pysam/include/samtools/dict.c' 2023-10-05T14:52:47,679 adding 'pysam/include/samtools/dict.c.pysam.c' 2023-10-05T14:52:47,682 adding 'pysam/include/samtools/faidx.c' 2023-10-05T14:52:47,684 adding 'pysam/include/samtools/faidx.c.pysam.c' 2023-10-05T14:52:47,687 adding 'pysam/include/samtools/padding.c' 2023-10-05T14:52:47,691 adding 'pysam/include/samtools/padding.c.pysam.c' 2023-10-05T14:52:47,695 adding 'pysam/include/samtools/phase.c' 2023-10-05T14:52:47,699 adding 'pysam/include/samtools/phase.c.pysam.c' 2023-10-05T14:52:47,702 adding 'pysam/include/samtools/reference.c' 2023-10-05T14:52:47,704 adding 'pysam/include/samtools/reference.c.pysam.c' 2023-10-05T14:52:47,707 adding 'pysam/include/samtools/reset.c' 2023-10-05T14:52:47,710 adding 'pysam/include/samtools/reset.c.pysam.c' 2023-10-05T14:52:47,712 adding 'pysam/include/samtools/sam_opts.c' 2023-10-05T14:52:47,714 adding 'pysam/include/samtools/sam_opts.c.pysam.c' 2023-10-05T14:52:47,715 adding 'pysam/include/samtools/sam_opts.h' 2023-10-05T14:52:47,717 adding 'pysam/include/samtools/sam_utils.c' 2023-10-05T14:52:47,718 adding 'pysam/include/samtools/sam_utils.c.pysam.c' 2023-10-05T14:52:47,720 adding 'pysam/include/samtools/sam_utils.h' 2023-10-05T14:52:47,727 adding 'pysam/include/samtools/sam_view.c' 2023-10-05T14:52:47,734 adding 'pysam/include/samtools/sam_view.c.pysam.c' 2023-10-05T14:52:47,736 adding 'pysam/include/samtools/sample.c' 2023-10-05T14:52:47,737 adding 'pysam/include/samtools/sample.c.pysam.c' 2023-10-05T14:52:47,739 adding 'pysam/include/samtools/sample.h' 2023-10-05T14:52:47,740 adding 'pysam/include/samtools/samtools.h' 2023-10-05T14:52:47,741 adding 'pysam/include/samtools/samtools.pysam.c' 2023-10-05T14:52:47,742 adding 'pysam/include/samtools/samtools.pysam.h' 2023-10-05T14:52:47,744 adding 'pysam/include/samtools/splaysort.h' 2023-10-05T14:52:47,756 adding 'pysam/include/samtools/stats.c' 2023-10-05T14:52:47,768 adding 'pysam/include/samtools/stats.c.pysam.c' 2023-10-05T14:52:47,771 adding 'pysam/include/samtools/stats_isize.c' 2023-10-05T14:52:47,772 adding 'pysam/include/samtools/stats_isize.c.pysam.c' 2023-10-05T14:52:47,774 adding 'pysam/include/samtools/stats_isize.h' 2023-10-05T14:52:47,776 adding 'pysam/include/samtools/tmp_file.c' 2023-10-05T14:52:47,778 adding 'pysam/include/samtools/tmp_file.c.pysam.c' 2023-10-05T14:52:47,780 adding 'pysam/include/samtools/tmp_file.h' 2023-10-05T14:52:47,781 adding 'pysam/include/samtools/version.sh' 2023-10-05T14:52:47,783 adding 'pysam/include/samtools/lz4/LICENSE' 2023-10-05T14:52:47,789 adding 'pysam/include/samtools/lz4/lz4.c' 2023-10-05T14:52:47,796 adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' 2023-10-05T14:52:47,799 adding 'pysam/include/samtools/lz4/lz4.h' 2023-10-05T14:52:47,802 adding 'pysam-0.22.0.dist-info/AUTHORS' 2023-10-05T14:52:47,803 adding 'pysam-0.22.0.dist-info/COPYING' 2023-10-05T14:52:47,804 adding 'pysam-0.22.0.dist-info/METADATA' 2023-10-05T14:52:47,805 adding 'pysam-0.22.0.dist-info/WHEEL' 2023-10-05T14:52:47,806 adding 'pysam-0.22.0.dist-info/top_level.txt' 2023-10-05T14:52:47,814 adding 'pysam-0.22.0.dist-info/RECORD' 2023-10-05T14:52:48,023 removing build/bdist.linux-armv7l/wheel 2023-10-05T14:52:49,120 Building wheel for pysam (pyproject.toml): finished with status 'done' 2023-10-05T14:52:49,515 Created wheel for pysam: filename=pysam-0.22.0-cp39-cp39-linux_armv7l.whl size=17526915 sha256=8f9c27a435ceb9a0352306fd0a0dc107b50456a050ea10ea077af928352babc6 2023-10-05T14:52:49,516 Stored in directory: /tmp/pip-ephem-wheel-cache-5f2o6xid/wheels/0f/4a/1e/667e44d2281914fc3f223519ba8f7e606fa98752509f01a37b 2023-10-05T14:52:49,549 Successfully built pysam 2023-10-05T14:52:49,947 Removed build tracker: '/tmp/pip-build-tracker-yr7up390'