2023-10-05T15:58:02,192 Created temporary directory: /tmp/pip-build-tracker-xabwryd2 2023-10-05T15:58:02,193 Initialized build tracking at /tmp/pip-build-tracker-xabwryd2 2023-10-05T15:58:02,194 Created build tracker: /tmp/pip-build-tracker-xabwryd2 2023-10-05T15:58:02,194 Entered build tracker: /tmp/pip-build-tracker-xabwryd2 2023-10-05T15:58:02,195 Created temporary directory: /tmp/pip-wheel-9ozwfgi6 2023-10-05T15:58:02,198 Created temporary directory: /tmp/pip-ephem-wheel-cache-4932j869 2023-10-05T15:58:02,219 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-05T15:58:02,223 2 location(s) to search for versions of sequana: 2023-10-05T15:58:02,223 * https://pypi.org/simple/sequana/ 2023-10-05T15:58:02,223 * https://www.piwheels.org/simple/sequana/ 2023-10-05T15:58:02,224 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-10-05T15:58:02,225 Getting page https://pypi.org/simple/sequana/ 2023-10-05T15:58:02,226 Found index url https://pypi.org/simple/ 2023-10-05T15:58:02,448 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-10-05T15:58:02,463 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-10-05T15:58:02,463 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-10-05T15:58:02,464 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-10-05T15:58:02,465 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.1 2023-10-05T15:58:02,465 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.2 2023-10-05T15:58:02,466 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.4 2023-10-05T15:58:02,467 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.5 2023-10-05T15:58:02,468 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.6 2023-10-05T15:58:02,469 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.7 2023-10-05T15:58:02,470 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.8 2023-10-05T15:58:02,470 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.9 2023-10-05T15:58:02,471 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.10 2023-10-05T15:58:02,472 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.11 2023-10-05T15:58:02,472 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.12 2023-10-05T15:58:02,473 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.13 2023-10-05T15:58:02,474 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.14 2023-10-05T15:58:02,475 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.15 2023-10-05T15:58:02,476 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.16 2023-10-05T15:58:02,476 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2023-10-05T15:58:02,477 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.18 2023-10-05T15:58:02,477 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.19 2023-10-05T15:58:02,478 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2023-10-05T15:58:02,479 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2023-10-05T15:58:02,479 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2023-10-05T15:58:02,480 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2023-10-05T15:58:02,481 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2023-10-05T15:58:02,481 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2023-10-05T15:58:02,482 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2023-10-05T15:58:02,483 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-10-05T15:58:02,484 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-10-05T15:58:02,484 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-10-05T15:58:02,485 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-10-05T15:58:02,486 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2023-10-05T15:58:02,487 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2023-10-05T15:58:02,487 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2023-10-05T15:58:02,488 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2023-10-05T15:58:02,489 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2023-10-05T15:58:02,489 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2023-10-05T15:58:02,490 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2023-10-05T15:58:02,490 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2023-10-05T15:58:02,491 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2023-10-05T15:58:02,492 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2023-10-05T15:58:02,493 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2023-10-05T15:58:02,493 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2023-10-05T15:58:02,494 Found link 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https://files.pythonhosted.org/packages/4f/9f/8802f849199c88d3f52625b9792bbb38e91dc59d6586c6b784f2c8352019/sequana-0.15.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.0 2023-10-05T15:58:02,520 Found link https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.1 2023-10-05T15:58:02,521 Found link https://files.pythonhosted.org/packages/cf/49/e643ec7dcaf9e6e963126a186f1d042ca416f308d820e11fefd27518a5b5/sequana-0.15.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.2 2023-10-05T15:58:02,522 Found link https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.3 2023-10-05T15:58:02,522 Found link 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2023-10-05T15:58:02,761 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.2-py3-none-any.whl#sha256=9daac3efca51d0416a4eb439ec2841fe9e0f79ab1771903e47570b683d3af55c (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,762 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.1-py3-none-any.whl#sha256=d9f7ee133817ee93576077f9a05fc6b0ff338b37c5951b7640811ee905aecec9 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,763 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.6.0-py3-none-any.whl#sha256=591516e3de4dc8a8409e657781f9d138df70dba70689d6391cbbbc9c42b0c38e (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,763 Skipping link: No binaries permitted for sequana: 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2023-10-05T15:58:02,766 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.1-py3-none-any.whl#sha256=4b67e3ac6f5e54aa37b0da900d08a73ec9f5517735d2ae91fb038acab735a773 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,767 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.0-py3-none-any.whl#sha256=3080e21d1193e999b07f07f7227c3e70af6a9655e9c706bbfb1d6be64be0e71f (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,768 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.3.0-py3-none-any.whl#sha256=784c45559b3813a77c854c88c7f87f069fc80854dab49c4ce554d9e8d955bfee (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,768 Skipping link: No binaries permitted for sequana: 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2023-10-05T15:58:02,771 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,772 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,773 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.17.1-py3-none-any.whl#sha256=42ab5898af408588dff9d91d1e90f24ce831d1fc6c6298c2ab58efd248995a84 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,774 Skipping link: No binaries permitted for sequana: 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2023-10-05T15:58:02,776 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,777 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,778 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,778 Skipping link: No binaries permitted for sequana: 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2023-10-05T15:58:02,781 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,782 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,783 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,785 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,785 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,786 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,786 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-10-05T15:58:02,787 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-10-05T15:58:02,788 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-10-05T15:58:02,817 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-10-05T15:58:02,836 Collecting sequana==0.15.4 2023-10-05T15:58:02,839 Created temporary directory: /tmp/pip-unpack-3dqcepsp 2023-10-05T15:58:03,080 Downloading sequana-0.15.4.tar.gz (1.6 MB) 2023-10-05T15:58:05,073 Added sequana==0.15.4 from https://files.pythonhosted.org/packages/0f/65/ebc06c97950f19d32900b54c15be8adc9c7325af10ccffb0f8b31740d6d8/sequana-0.15.4.tar.gz to build tracker '/tmp/pip-build-tracker-xabwryd2' 2023-10-05T15:58:05,076 Running setup.py (path:/tmp/pip-wheel-9ozwfgi6/sequana_0cdeab4d4bc549a3bfc9da152e05ea5b/setup.py) egg_info for package sequana 2023-10-05T15:58:05,077 Created temporary directory: /tmp/pip-pip-egg-info-hcut9ci8 2023-10-05T15:58:05,078 Preparing metadata (setup.py): started 2023-10-05T15:58:05,080 Running command python setup.py egg_info 2023-10-05T15:58:06,320 running egg_info 2023-10-05T15:58:06,321 creating /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info 2023-10-05T15:58:06,352 writing /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/PKG-INFO 2023-10-05T15:58:06,363 writing dependency_links to /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/dependency_links.txt 2023-10-05T15:58:06,365 writing entry points to /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/entry_points.txt 2023-10-05T15:58:06,370 writing requirements to /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/requires.txt 2023-10-05T15:58:06,371 writing top-level names to /tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/top_level.txt 2023-10-05T15:58:06,372 writing manifest file '/tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/SOURCES.txt' 2023-10-05T15:58:06,635 reading manifest file '/tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/SOURCES.txt' 2023-10-05T15:58:06,637 reading manifest template 'MANIFEST.in' 2023-10-05T15:58:06,639 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-10-05T15:58:06,640 warning: no previously-included files matching '*pyc' found under directory '*' 2023-10-05T15:58:06,778 warning: no files found matching 'test/requirements*txt' 2023-10-05T15:58:06,779 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-10-05T15:58:06,780 warning: no previously-included files matching '*' found under directory 'test' 2023-10-05T15:58:06,781 warning: no previously-included files matching '*' found under directory 'doc' 2023-10-05T15:58:06,782 warning: no previously-included files found matching 'sequana/rm2.py' 2023-10-05T15:58:06,782 adding license file 'LICENSE' 2023-10-05T15:58:06,794 writing manifest file '/tmp/pip-pip-egg-info-hcut9ci8/sequana.egg-info/SOURCES.txt' 2023-10-05T15:58:06,904 Preparing metadata (setup.py): finished with status 'done' 2023-10-05T15:58:06,909 Source in /tmp/pip-wheel-9ozwfgi6/sequana_0cdeab4d4bc549a3bfc9da152e05ea5b has version 0.15.4, which satisfies requirement sequana==0.15.4 from https://files.pythonhosted.org/packages/0f/65/ebc06c97950f19d32900b54c15be8adc9c7325af10ccffb0f8b31740d6d8/sequana-0.15.4.tar.gz 2023-10-05T15:58:06,910 Removed sequana==0.15.4 from https://files.pythonhosted.org/packages/0f/65/ebc06c97950f19d32900b54c15be8adc9c7325af10ccffb0f8b31740d6d8/sequana-0.15.4.tar.gz from build tracker '/tmp/pip-build-tracker-xabwryd2' 2023-10-05T15:58:06,921 Created temporary directory: /tmp/pip-unpack-qvpze1cq 2023-10-05T15:58:06,922 Created temporary directory: /tmp/pip-unpack-05k5e03g 2023-10-05T15:58:07,012 Building wheels for collected packages: sequana 2023-10-05T15:58:07,016 Created temporary directory: /tmp/pip-wheel-o1_ki9zq 2023-10-05T15:58:07,017 Building wheel for sequana (setup.py): started 2023-10-05T15:58:07,018 Destination directory: /tmp/pip-wheel-o1_ki9zq 2023-10-05T15:58:07,018 Running command python setup.py bdist_wheel 2023-10-05T15:58:08,082 running bdist_wheel 2023-10-05T15:58:08,180 running build 2023-10-05T15:58:08,180 running build_py 2023-10-05T15:58:08,209 creating build 2023-10-05T15:58:08,210 creating build/lib 2023-10-05T15:58:08,210 creating build/lib/sequana 2023-10-05T15:58:08,212 copying sequana/vcf_filter.py -> build/lib/sequana 2023-10-05T15:58:08,214 copying sequana/coverage.py -> build/lib/sequana 2023-10-05T15:58:08,216 copying sequana/databases.py -> build/lib/sequana 2023-10-05T15:58:08,219 copying sequana/canu_scanner.py -> build/lib/sequana 2023-10-05T15:58:08,221 copying sequana/lazy.py -> build/lib/sequana 2023-10-05T15:58:08,222 copying sequana/genbank.py -> build/lib/sequana 2023-10-05T15:58:08,224 copying sequana/assembly.py -> build/lib/sequana 2023-10-05T15:58:08,226 copying sequana/isoseq.py -> build/lib/sequana 2023-10-05T15:58:08,229 copying sequana/fasta.py -> build/lib/sequana 2023-10-05T15:58:08,231 copying sequana/errors.py -> build/lib/sequana 2023-10-05T15:58:08,233 copying sequana/fastq.py -> build/lib/sequana 2023-10-05T15:58:08,236 copying sequana/criteria.py -> build/lib/sequana 2023-10-05T15:58:08,238 copying sequana/phred.py -> build/lib/sequana 2023-10-05T15:58:08,240 copying sequana/kmer.py -> build/lib/sequana 2023-10-05T15:58:08,241 copying sequana/snpeff.py -> build/lib/sequana 2023-10-05T15:58:08,243 copying sequana/tools.py -> build/lib/sequana 2023-10-05T15:58:08,246 copying sequana/idr.py -> build/lib/sequana 2023-10-05T15:58:08,248 copying sequana/contigs.py -> build/lib/sequana 2023-10-05T15:58:08,250 copying sequana/lazyimports.py -> build/lib/sequana 2023-10-05T15:58:08,252 copying sequana/codon.py -> build/lib/sequana 2023-10-05T15:58:08,254 copying sequana/fastqc.py -> build/lib/sequana 2023-10-05T15:58:08,256 copying sequana/laa.py -> build/lib/sequana 2023-10-05T15:58:08,258 copying sequana/salmon.py -> build/lib/sequana 2023-10-05T15:58:08,260 copying sequana/mgi.py -> build/lib/sequana 2023-10-05T15:58:08,262 copying sequana/rnadiff.py -> build/lib/sequana 2023-10-05T15:58:08,265 copying sequana/cnv.py -> build/lib/sequana 2023-10-05T15:58:08,267 copying sequana/vcftools.py -> build/lib/sequana 2023-10-05T15:58:08,269 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-10-05T15:58:08,271 copying sequana/cigar.py -> build/lib/sequana 2023-10-05T15:58:08,273 copying sequana/mh.py -> build/lib/sequana 2023-10-05T15:58:08,275 copying sequana/mixture.py -> build/lib/sequana 2023-10-05T15:58:08,277 copying sequana/compare.py -> build/lib/sequana 2023-10-05T15:58:08,280 copying sequana/trf.py -> build/lib/sequana 2023-10-05T15:58:08,282 copying sequana/demultiplex.py -> build/lib/sequana 2023-10-05T15:58:08,284 copying sequana/sniffer.py -> build/lib/sequana 2023-10-05T15:58:08,285 copying sequana/itol.py -> build/lib/sequana 2023-10-05T15:58:08,287 copying sequana/krona.py -> build/lib/sequana 2023-10-05T15:58:08,289 copying sequana/featurecounts.py -> build/lib/sequana 2023-10-05T15:58:08,291 copying sequana/gff3.py -> build/lib/sequana 2023-10-05T15:58:08,293 copying sequana/kegg.py -> build/lib/sequana 2023-10-05T15:58:08,295 copying sequana/datatools.py -> build/lib/sequana 2023-10-05T15:58:08,296 copying sequana/iem.py -> build/lib/sequana 2023-10-05T15:58:08,298 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-10-05T15:58:08,300 copying sequana/iuapc.py -> build/lib/sequana 2023-10-05T15:58:08,302 copying sequana/stats.py -> build/lib/sequana 2023-10-05T15:58:08,304 copying sequana/phantom.py -> build/lib/sequana 2023-10-05T15:58:08,306 copying sequana/misc.py -> build/lib/sequana 2023-10-05T15:58:08,307 copying sequana/vst.py -> build/lib/sequana 2023-10-05T15:58:08,309 copying sequana/__init__.py -> build/lib/sequana 2023-10-05T15:58:08,310 copying sequana/homer.py -> build/lib/sequana 2023-10-05T15:58:08,312 copying sequana/running_median.py -> build/lib/sequana 2023-10-05T15:58:08,314 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-10-05T15:58:08,316 copying sequana/sequence.py -> build/lib/sequana 2023-10-05T15:58:08,318 copying sequana/cpg_islands.py -> build/lib/sequana 2023-10-05T15:58:08,320 copying sequana/pacbio.py -> build/lib/sequana 2023-10-05T15:58:08,322 copying sequana/bamtools.py -> build/lib/sequana 2023-10-05T15:58:08,325 copying sequana/ribodesigner.py -> build/lib/sequana 2023-10-05T15:58:08,327 copying sequana/macs3.py -> build/lib/sequana 2023-10-05T15:58:08,329 copying sequana/frip.py -> build/lib/sequana 2023-10-05T15:58:08,331 copying sequana/bed.py -> build/lib/sequana 2023-10-05T15:58:08,333 copying sequana/protein.py -> build/lib/sequana 2023-10-05T15:58:08,335 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-10-05T15:58:08,337 copying sequana/find_motif.py -> build/lib/sequana 2023-10-05T15:58:08,339 copying sequana/taxonomy.py -> build/lib/sequana 2023-10-05T15:58:08,342 copying sequana/bedtools.py -> build/lib/sequana 2023-10-05T15:58:08,344 copying sequana/summary.py -> build/lib/sequana 2023-10-05T15:58:08,347 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-10-05T15:58:08,349 creating build/lib/sequana/kraken 2023-10-05T15:58:08,350 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-10-05T15:58:08,353 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-10-05T15:58:08,355 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-10-05T15:58:08,357 creating build/lib/sequana/resources 2023-10-05T15:58:08,358 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-10-05T15:58:08,360 creating build/lib/sequana/utils 2023-10-05T15:58:08,361 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-10-05T15:58:08,363 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-10-05T15:58:08,365 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-10-05T15:58:08,367 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-10-05T15:58:08,369 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-10-05T15:58:08,371 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-10-05T15:58:08,373 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-10-05T15:58:08,375 creating build/lib/sequana/multiqc 2023-10-05T15:58:08,376 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,378 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,380 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,383 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,385 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,387 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,388 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,390 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,391 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,393 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,395 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,397 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-10-05T15:58:08,399 creating build/lib/sequana/modules_report 2023-10-05T15:58:08,400 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,403 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,405 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,407 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,409 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,410 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,412 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,414 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,416 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,418 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,420 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,422 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,424 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,426 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,428 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,430 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,431 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,433 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,435 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,437 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,439 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-10-05T15:58:08,442 creating build/lib/sequana/rules 2023-10-05T15:58:08,443 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-10-05T15:58:08,444 creating build/lib/sequana/scripts 2023-10-05T15:58:08,445 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-10-05T15:58:08,448 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-10-05T15:58:08,450 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-10-05T15:58:08,451 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-10-05T15:58:08,453 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-10-05T15:58:08,456 creating build/lib/sequana/plots 2023-10-05T15:58:08,457 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-10-05T15:58:08,459 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-10-05T15:58:08,461 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-10-05T15:58:08,463 creating build/lib/sequana/enrichment 2023-10-05T15:58:08,464 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,466 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,468 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,470 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,472 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,473 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,476 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,478 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,479 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-10-05T15:58:08,482 creating build/lib/sequana/viz 2023-10-05T15:58:08,483 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-10-05T15:58:08,484 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-10-05T15:58:08,486 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-10-05T15:58:08,488 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-10-05T15:58:08,490 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-10-05T15:58:08,492 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-10-05T15:58:08,494 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-10-05T15:58:08,496 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-10-05T15:58:08,498 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-10-05T15:58:08,500 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-10-05T15:58:08,501 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-10-05T15:58:08,503 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-10-05T15:58:08,504 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-10-05T15:58:08,506 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-10-05T15:58:08,508 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-10-05T15:58:08,510 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-10-05T15:58:08,512 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-10-05T15:58:08,514 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-10-05T15:58:08,516 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-10-05T15:58:08,518 creating build/lib/sequana/resources/templates 2023-10-05T15:58:08,519 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,521 creating build/lib/sequana/resources/images 2023-10-05T15:58:08,521 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-10-05T15:58:08,523 creating build/lib/sequana/resources/canvas 2023-10-05T15:58:08,524 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-10-05T15:58:08,526 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-10-05T15:58:08,528 creating build/lib/sequana/resources/examples 2023-10-05T15:58:08,529 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-10-05T15:58:08,531 creating build/lib/sequana/resources/css 2023-10-05T15:58:08,532 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-10-05T15:58:08,534 creating build/lib/sequana/resources/data 2023-10-05T15:58:08,535 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-10-05T15:58:08,537 creating build/lib/sequana/resources/snpeff 2023-10-05T15:58:08,538 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-10-05T15:58:08,539 creating build/lib/sequana/resources/doc 2023-10-05T15:58:08,540 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-10-05T15:58:08,542 creating build/lib/sequana/resources/testing 2023-10-05T15:58:08,543 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-10-05T15:58:08,545 creating build/lib/sequana/resources/js 2023-10-05T15:58:08,546 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-10-05T15:58:08,548 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-10-05T15:58:08,549 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-10-05T15:58:08,550 creating build/lib/sequana/resources/doc/rnaseq_0 2023-10-05T15:58:08,551 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-10-05T15:58:08,553 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-10-05T15:58:08,554 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-10-05T15:58:08,556 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-05T15:58:08,556 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-05T15:58:08,558 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-05T15:58:08,559 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-05T15:58:08,561 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-05T15:58:08,562 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-05T15:58:08,563 creating build/lib/sequana/rules/picard-tools 2023-10-05T15:58:08,564 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-10-05T15:58:08,566 creating build/lib/sequana/rules/SnpEff 2023-10-05T15:58:08,567 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-10-05T15:58:08,569 creating build/lib/sequana/rules/Pacbio 2023-10-05T15:58:08,570 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-10-05T15:58:08,571 creating build/lib/sequana/rules/deeptools 2023-10-05T15:58:08,572 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-10-05T15:58:08,574 creating build/lib/sequana/rules/idr 2023-10-05T15:58:08,575 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-10-05T15:58:08,577 creating build/lib/sequana/rules/sambamba 2023-10-05T15:58:08,578 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2023-10-05T15:58:08,579 creating build/lib/sequana/rules/codecs 2023-10-05T15:58:08,580 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-10-05T15:58:08,583 creating build/lib/sequana/scripts/main 2023-10-05T15:58:08,584 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,586 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,587 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,589 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,591 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,592 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,594 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,596 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,598 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,599 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,601 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,603 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,605 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,606 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,607 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,609 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,611 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,613 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,615 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,616 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,618 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,620 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,622 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-10-05T15:58:08,761 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-10-05T15:58:08,764 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-10-05T15:58:08,765 creating build/lib/sequana/rules/samtools_sort 2023-10-05T15:58:08,766 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-10-05T15:58:08,768 creating build/lib/sequana/rules/salmon_index 2023-10-05T15:58:08,769 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-10-05T15:58:08,771 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-10-05T15:58:08,772 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-10-05T15:58:08,774 creating build/lib/sequana/rules/samtools_depth 2023-10-05T15:58:08,775 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2023-10-05T15:58:08,777 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-10-05T15:58:08,778 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-10-05T15:58:08,780 creating build/lib/sequana/rules/cutadapt 2023-10-05T15:58:08,780 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-10-05T15:58:08,783 creating build/lib/sequana/rules/summary_pipeline 2023-10-05T15:58:08,784 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-10-05T15:58:08,786 creating build/lib/sequana/rules/bamCoverage 2023-10-05T15:58:08,787 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-10-05T15:58:08,789 creating build/lib/sequana/rules/freebayes_vcf_filter 2023-10-05T15:58:08,790 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2023-10-05T15:58:08,792 creating build/lib/sequana/rules/pacbio_quality 2023-10-05T15:58:08,793 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-10-05T15:58:08,795 creating build/lib/sequana/rules/fastqc 2023-10-05T15:58:08,796 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2023-10-05T15:58:08,798 creating build/lib/sequana/rules/indel_realigner 2023-10-05T15:58:08,799 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-10-05T15:58:08,801 creating build/lib/sequana/rules/igvtools 2023-10-05T15:58:08,802 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-10-05T15:58:08,804 creating build/lib/sequana/rules/multiqc 2023-10-05T15:58:08,805 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2023-10-05T15:58:08,807 creating build/lib/sequana/rules/fastq_screen_report 2023-10-05T15:58:08,808 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-10-05T15:58:08,810 creating build/lib/sequana/rules/fastq_screen 2023-10-05T15:58:08,811 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-10-05T15:58:08,813 creating build/lib/sequana/rules/spades_get_fastq 2023-10-05T15:58:08,814 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-10-05T15:58:08,815 creating build/lib/sequana/rules/fastq_sampling 2023-10-05T15:58:08,816 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-10-05T15:58:08,818 creating build/lib/sequana/rules/bed_to_gff 2023-10-05T15:58:08,819 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-10-05T15:58:08,821 creating build/lib/sequana/rules/prokka 2023-10-05T15:58:08,821 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-10-05T15:58:08,823 creating build/lib/sequana/rules/bam_quality_filter 2023-10-05T15:58:08,824 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-10-05T15:58:08,826 creating build/lib/sequana/rules/copy_multiple_files 2023-10-05T15:58:08,827 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2023-10-05T15:58:08,829 creating build/lib/sequana/rules/spikes_counting 2023-10-05T15:58:08,830 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-10-05T15:58:08,832 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-10-05T15:58:08,832 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-10-05T15:58:08,835 creating build/lib/sequana/rules/DupRadar 2023-10-05T15:58:08,835 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-10-05T15:58:08,837 creating build/lib/sequana/rules/rnaseqc 2023-10-05T15:58:08,838 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-10-05T15:58:08,840 creating build/lib/sequana/rules/revcomp_rule 2023-10-05T15:58:08,841 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-10-05T15:58:08,843 creating build/lib/sequana/rules/freebayes 2023-10-05T15:58:08,844 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2023-10-05T15:58:08,846 creating build/lib/sequana/rules/salmon_mapping 2023-10-05T15:58:08,847 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-10-05T15:58:08,849 creating build/lib/sequana/rules/multiqc2 2023-10-05T15:58:08,850 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2023-10-05T15:58:08,852 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-10-05T15:58:08,853 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-10-05T15:58:08,855 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-10-05T15:58:08,856 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-10-05T15:58:08,858 creating build/lib/sequana/rules/format_contigs 2023-10-05T15:58:08,859 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-10-05T15:58:08,861 creating build/lib/sequana/rules/fastp 2023-10-05T15:58:08,862 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2023-10-05T15:58:08,864 creating build/lib/sequana/rules/SARTools 2023-10-05T15:58:08,865 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2023-10-05T15:58:08,868 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-05T15:58:08,868 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-05T15:58:08,870 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-10-05T15:58:08,871 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-10-05T15:58:08,873 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-10-05T15:58:08,874 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-10-05T15:58:08,876 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-05T15:58:08,876 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-05T15:58:08,879 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-10-05T15:58:08,880 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-10-05T15:58:08,882 creating build/lib/sequana/rules/kraken 2023-10-05T15:58:08,882 creating build/lib/sequana/rules/kraken/2.0 2023-10-05T15:58:08,883 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-10-05T15:58:08,885 creating build/lib/sequana/rules/kraken/1.0 2023-10-05T15:58:08,886 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-10-05T15:58:08,888 creating build/lib/sequana/rules/kraken/1.1 2023-10-05T15:58:08,889 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-10-05T15:58:08,891 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-10-05T15:58:08,892 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-10-05T15:58:08,894 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-10-05T15:58:08,895 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-10-05T15:58:08,897 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-10-05T15:58:08,898 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-10-05T15:58:08,899 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-10-05T15:58:08,900 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-10-05T15:58:08,902 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-10-05T15:58:08,903 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-10-05T15:58:08,905 creating build/lib/sequana/rules/multiqc/2.0 2023-10-05T15:58:08,906 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2023-10-05T15:58:08,908 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-10-05T15:58:08,909 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-10-05T15:58:08,911 creating build/lib/sequana/rules/idr/intersectionApproach 2023-10-05T15:58:08,912 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-10-05T15:58:08,914 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-10-05T15:58:08,915 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-10-05T15:58:08,917 creating build/lib/sequana/rules/idr/select_peaks 2023-10-05T15:58:08,918 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-10-05T15:58:08,920 creating build/lib/sequana/rules/idr/union_peaks 2023-10-05T15:58:08,921 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-10-05T15:58:08,923 creating build/lib/sequana/rules/idr/metrics_peaks 2023-10-05T15:58:08,924 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-10-05T15:58:08,926 creating build/lib/sequana/rules/idr/compute_idr 2023-10-05T15:58:08,927 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-10-05T15:58:08,929 creating build/lib/sequana/rules/sambamba/sambamba_filter 2023-10-05T15:58:08,930 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2023-10-05T15:58:08,932 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2023-10-05T15:58:08,932 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2023-10-05T15:58:08,934 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-10-05T15:58:08,935 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-10-05T15:58:08,937 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-10-05T15:58:08,938 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-10-05T15:58:08,940 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-10-05T15:58:08,941 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-10-05T15:58:08,943 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-10-05T15:58:08,944 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-10-05T15:58:08,946 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-10-05T15:58:08,946 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-10-05T15:58:08,948 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-10-05T15:58:08,949 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-10-05T15:58:08,951 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-10-05T15:58:08,952 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-10-05T15:58:08,954 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-10-05T15:58:08,958 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-10-05T15:58:08,960 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-10-05T15:58:08,961 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-10-05T15:58:08,963 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-10-05T15:58:08,964 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-10-05T15:58:08,966 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-10-05T15:58:08,966 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-05T15:58:08,967 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-05T15:58:08,969 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-05T15:58:08,970 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-05T15:58:08,972 creating build/lib/sequana/rules/SnpEff/snpeff 2023-10-05T15:58:08,973 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-10-05T15:58:08,974 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-10-05T15:58:08,976 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-10-05T15:58:08,977 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-10-05T15:58:08,979 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,981 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,983 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,985 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,987 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-10-05T15:58:08,989 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-10-05T15:58:08,992 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-10-05T15:58:08,996 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-10-05T15:58:08,998 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-10-05T15:58:09,000 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-10-05T15:58:09,002 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-10-05T15:58:09,005 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-10-05T15:58:09,008 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-10-05T15:58:09,009 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-10-05T15:58:09,012 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-10-05T15:58:09,014 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-10-05T15:58:09,017 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-10-05T15:58:09,021 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-10-05T15:58:09,023 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-10-05T15:58:09,025 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-10-05T15:58:09,028 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-10-05T15:58:09,030 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-10-05T15:58:09,036 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-10-05T15:58:09,040 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-10-05T15:58:09,052 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-10-05T15:58:09,056 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-10-05T15:58:09,058 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,060 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,062 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,064 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,066 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,068 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,080 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,083 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,085 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,087 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,089 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,096 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,098 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,100 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,102 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,104 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,112 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,114 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-10-05T15:58:09,116 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,119 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,122 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,124 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,127 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,131 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,133 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,136 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,139 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,146 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,152 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,154 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,158 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-10-05T15:58:09,204 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-05T15:58:09,205 !! 2023-10-05T15:58:09,206 ******************************************************************************** 2023-10-05T15:58:09,207 Please avoid running ``setup.py`` directly. 2023-10-05T15:58:09,207 Instead, use pypa/build, pypa/installer or other 2023-10-05T15:58:09,208 standards-based tools. 2023-10-05T15:58:09,209 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-05T15:58:09,209 ******************************************************************************** 2023-10-05T15:58:09,211 !! 2023-10-05T15:58:09,211 self.initialize_options() 2023-10-05T15:58:09,234 installing to build/bdist.linux-armv7l/wheel 2023-10-05T15:58:09,235 running install 2023-10-05T15:58:09,261 running install_lib 2023-10-05T15:58:09,287 creating build/bdist.linux-armv7l 2023-10-05T15:58:09,288 creating build/bdist.linux-armv7l/wheel 2023-10-05T15:58:09,291 creating build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,293 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,296 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,298 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,301 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,303 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,305 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,308 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,310 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-05T15:58:09,311 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-05T15:58:09,314 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-05T15:58:09,317 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-10-05T15:58:09,318 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,321 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-10-05T15:58:09,323 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,324 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,327 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,329 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,332 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,334 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,336 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-10-05T15:58:09,339 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,340 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,343 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,347 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,349 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,351 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-10-05T15:58:09,354 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-05T15:58:09,355 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-05T15:58:09,357 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-10-05T15:58:09,359 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-05T15:58:09,359 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-05T15:58:09,362 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-05T15:58:09,364 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-05T15:58:09,366 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-10-05T15:58:09,368 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,369 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,371 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,372 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,375 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,377 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,378 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-10-05T15:58:09,382 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,383 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,385 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,392 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,396 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,398 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,405 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,408 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,409 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,411 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-10-05T15:58:09,416 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-05T15:58:09,417 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-05T15:58:09,418 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-10-05T15:58:09,420 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-10-05T15:58:09,423 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-10-05T15:58:09,424 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-10-05T15:58:09,425 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-10-05T15:58:09,427 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-10-05T15:58:09,428 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-10-05T15:58:09,430 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-10-05T15:58:09,431 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-05T15:58:09,432 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-10-05T15:58:09,434 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-05T15:58:09,435 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-10-05T15:58:09,437 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-05T15:58:09,438 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-10-05T15:58:09,440 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-10-05T15:58:09,442 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-10-05T15:58:09,444 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,445 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,446 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,448 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,450 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,461 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,464 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,466 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,467 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,469 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,476 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,478 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,480 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,481 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,483 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,485 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,492 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,494 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,496 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,498 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-10-05T15:58:09,500 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,501 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,503 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,506 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,508 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,511 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,514 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,516 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,519 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,522 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,523 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,529 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,536 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,537 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,540 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-10-05T15:58:09,543 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,546 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,547 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,550 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,552 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,554 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,555 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,557 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,560 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,562 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,564 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,566 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,569 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,571 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,574 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,577 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,579 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,583 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,585 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,586 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,589 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,591 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,593 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,596 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,599 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,600 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-10-05T15:58:09,602 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,605 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,607 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,608 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,611 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,614 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,616 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,619 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,621 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,624 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,626 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,628 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,630 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,633 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,635 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,638 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-10-05T15:58:09,640 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,642 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,645 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,648 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,650 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,653 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,656 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,657 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,660 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,663 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,666 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,668 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,670 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,673 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,675 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,677 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,680 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,681 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,684 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,685 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,687 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,689 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,691 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,693 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,695 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,697 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,699 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,701 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-10-05T15:58:09,704 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-05T15:58:09,705 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-10-05T15:58:09,706 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-05T15:58:09,707 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-10-05T15:58:09,709 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-10-05T15:58:09,710 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-10-05T15:58:09,712 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-10-05T15:58:09,713 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-10-05T15:58:09,715 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-05T15:58:09,716 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-10-05T15:58:09,718 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-10-05T15:58:09,720 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-10-05T15:58:09,721 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-10-05T15:58:09,723 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-10-05T15:58:09,724 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-10-05T15:58:09,726 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-10-05T15:58:09,727 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-10-05T15:58:09,729 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-10-05T15:58:09,730 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-10-05T15:58:09,733 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-10-05T15:58:09,733 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2023-10-05T15:58:09,736 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-10-05T15:58:09,737 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-10-05T15:58:09,738 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-10-05T15:58:09,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-10-05T15:58:09,741 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-10-05T15:58:09,743 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-10-05T15:58:09,744 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-10-05T15:58:09,747 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-10-05T15:58:09,747 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-10-05T15:58:09,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-10-05T15:58:09,750 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-10-05T15:58:09,753 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-10-05T15:58:09,754 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-10-05T15:58:09,756 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-10-05T15:58:09,757 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-10-05T15:58:09,759 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-05T15:58:09,760 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-10-05T15:58:09,762 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-05T15:58:09,763 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-10-05T15:58:09,765 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-10-05T15:58:09,767 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-10-05T15:58:09,769 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-10-05T15:58:09,770 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-10-05T15:58:09,771 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-10-05T15:58:09,773 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-10-05T15:58:09,774 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-10-05T15:58:09,776 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-10-05T15:58:09,778 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-10-05T15:58:09,779 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-10-05T15:58:09,781 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-10-05T15:58:09,782 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-10-05T15:58:09,784 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-10-05T15:58:09,785 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2023-10-05T15:58:09,787 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-10-05T15:58:09,788 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-10-05T15:58:09,789 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-10-05T15:58:09,791 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-10-05T15:58:09,792 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-10-05T15:58:09,794 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-10-05T15:58:09,795 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-10-05T15:58:09,797 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-10-05T15:58:09,798 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-10-05T15:58:09,799 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-10-05T15:58:09,802 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-10-05T15:58:09,803 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-10-05T15:58:09,805 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-10-05T15:58:09,806 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2023-10-05T15:58:09,808 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-10-05T15:58:09,809 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-10-05T15:58:09,811 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-10-05T15:58:09,812 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-10-05T15:58:09,814 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-10-05T15:58:09,815 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2023-10-05T15:58:09,818 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-10-05T15:58:09,819 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2023-10-05T15:58:09,821 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-10-05T15:58:09,822 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-10-05T15:58:09,824 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-10-05T15:58:09,825 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-10-05T15:58:09,828 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-10-05T15:58:09,829 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-10-05T15:58:09,831 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-10-05T15:58:09,832 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-10-05T15:58:09,834 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-10-05T15:58:09,835 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-10-05T15:58:09,837 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-10-05T15:58:09,838 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-10-05T15:58:09,840 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-10-05T15:58:09,841 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-10-05T15:58:09,843 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-10-05T15:58:09,844 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2023-10-05T15:58:09,846 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-10-05T15:58:09,847 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-10-05T15:58:09,848 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-10-05T15:58:09,851 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-10-05T15:58:09,852 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-10-05T15:58:09,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-10-05T15:58:09,855 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-10-05T15:58:09,857 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-10-05T15:58:09,858 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-10-05T15:58:09,860 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-10-05T15:58:09,861 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-10-05T15:58:09,863 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-10-05T15:58:09,865 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-10-05T15:58:09,866 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-10-05T15:58:09,868 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-10-05T15:58:09,869 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-10-05T15:58:09,872 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-10-05T15:58:09,873 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-10-05T15:58:09,875 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-10-05T15:58:09,876 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-10-05T15:58:09,878 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-10-05T15:58:09,879 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-10-05T15:58:09,882 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-10-05T15:58:09,883 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-10-05T15:58:09,885 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-05T15:58:09,886 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-10-05T15:58:09,887 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-10-05T15:58:09,889 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-10-05T15:58:09,890 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2023-10-05T15:58:09,893 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-10-05T15:58:09,895 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-10-05T15:58:09,896 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2023-10-05T15:58:09,898 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-10-05T15:58:09,899 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2023-10-05T15:58:09,901 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2023-10-05T15:58:09,903 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-10-05T15:58:09,904 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-10-05T15:58:09,906 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-10-05T15:58:09,907 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2023-10-05T15:58:09,909 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-10-05T15:58:09,911 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-10-05T15:58:09,912 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-10-05T15:58:09,914 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-10-05T15:58:09,915 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-10-05T15:58:09,918 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-10-05T15:58:09,919 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-10-05T15:58:09,921 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-10-05T15:58:09,922 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-10-05T15:58:09,924 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-10-05T15:58:09,925 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-10-05T15:58:09,927 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-10-05T15:58:09,928 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-10-05T15:58:09,930 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-10-05T15:58:09,932 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-10-05T15:58:09,933 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-10-05T15:58:09,935 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-10-05T15:58:09,936 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-10-05T15:58:09,938 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-10-05T15:58:09,939 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-10-05T15:58:09,942 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-10-05T15:58:09,943 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-10-05T15:58:09,945 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-10-05T15:58:09,945 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-10-05T15:58:09,948 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-10-05T15:58:09,950 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-10-05T15:58:09,950 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-10-05T15:58:09,953 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-10-05T15:58:09,954 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-10-05T15:58:09,956 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-10-05T15:58:09,957 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2023-10-05T15:58:09,959 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-10-05T15:58:09,960 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2023-10-05T15:58:09,962 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,964 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,966 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:09,969 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:09,970 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:09,972 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:09,975 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,976 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,978 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,980 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,982 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,984 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,986 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,988 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,990 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,992 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,994 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,996 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,998 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:09,999 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,001 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,002 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,005 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,007 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,008 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,011 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,013 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,015 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,017 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,019 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-10-05T15:58:10,021 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:10,022 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:10,024 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-10-05T15:58:10,026 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,028 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,031 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,032 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,034 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,036 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,039 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,041 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,042 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,045 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,047 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,048 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,051 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-05T15:58:10,052 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-05T15:58:10,054 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-05T15:58:10,056 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-10-05T15:58:10,057 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,059 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,061 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,063 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,065 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,067 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,070 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,073 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,076 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,077 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,079 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,081 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,083 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,085 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,087 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,090 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,092 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,094 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-10-05T15:58:10,095 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,098 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,099 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,101 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,104 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,104 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,106 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,108 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,110 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,112 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,114 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,116 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,119 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,120 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,123 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,125 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,127 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,129 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,131 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,133 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,135 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,137 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,139 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,141 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-10-05T15:58:10,143 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,145 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,147 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,149 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,152 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,154 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-10-05T15:58:10,156 running install_egg_info 2023-10-05T15:58:10,220 running egg_info 2023-10-05T15:58:10,244 writing sequana.egg-info/PKG-INFO 2023-10-05T15:58:10,254 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-10-05T15:58:10,256 writing entry points to sequana.egg-info/entry_points.txt 2023-10-05T15:58:10,261 writing requirements to sequana.egg-info/requires.txt 2023-10-05T15:58:10,262 writing top-level names to sequana.egg-info/top_level.txt 2023-10-05T15:58:10,428 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-10-05T15:58:10,437 reading manifest template 'MANIFEST.in' 2023-10-05T15:58:10,440 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-10-05T15:58:10,441 warning: no previously-included files matching '*pyc' found under directory '*' 2023-10-05T15:58:10,872 warning: no files found matching 'test/requirements*txt' 2023-10-05T15:58:10,873 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-10-05T15:58:10,874 warning: no previously-included files matching '*' found under directory 'test' 2023-10-05T15:58:10,876 warning: no previously-included files matching '*' found under directory 'doc' 2023-10-05T15:58:10,877 warning: no previously-included files found matching 'sequana/rm2.py' 2023-10-05T15:58:10,877 adding license file 'LICENSE' 2023-10-05T15:58:10,894 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-10-05T15:58:10,896 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.15.4-py3.11.egg-info 2023-10-05T15:58:10,911 running install_scripts 2023-10-05T15:58:10,941 creating build/bdist.linux-armv7l/wheel/sequana-0.15.4.dist-info/WHEEL 2023-10-05T15:58:10,944 creating '/tmp/pip-wheel-o1_ki9zq/sequana-0.15.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-05T15:58:10,946 adding 'sequana/__init__.py' 2023-10-05T15:58:10,948 adding 'sequana/assembly.py' 2023-10-05T15:58:10,955 adding 'sequana/bamtools.py' 2023-10-05T15:58:10,958 adding 'sequana/bed.py' 2023-10-05T15:58:10,967 adding 'sequana/bedtools.py' 2023-10-05T15:58:10,969 adding 'sequana/canu_scanner.py' 2023-10-05T15:58:10,971 adding 'sequana/cigar.py' 2023-10-05T15:58:10,973 adding 'sequana/cnv.py' 2023-10-05T15:58:10,974 adding 'sequana/codon.py' 2023-10-05T15:58:10,977 adding 'sequana/compare.py' 2023-10-05T15:58:10,979 adding 'sequana/contigs.py' 2023-10-05T15:58:10,981 adding 'sequana/coverage.py' 2023-10-05T15:58:10,983 adding 'sequana/cpg_islands.py' 2023-10-05T15:58:10,984 adding 'sequana/criteria.py' 2023-10-05T15:58:10,987 adding 'sequana/databases.py' 2023-10-05T15:58:10,988 adding 'sequana/datatools.py' 2023-10-05T15:58:10,990 adding 'sequana/demultiplex.py' 2023-10-05T15:58:10,991 adding 'sequana/errors.py' 2023-10-05T15:58:10,993 adding 'sequana/fasta.py' 2023-10-05T15:58:10,995 adding 'sequana/fasta_gff_correction.py' 2023-10-05T15:58:11,000 adding 'sequana/fastq.py' 2023-10-05T15:58:11,002 adding 'sequana/fastqc.py' 2023-10-05T15:58:11,005 adding 'sequana/featurecounts.py' 2023-10-05T15:58:11,007 adding 'sequana/find_motif.py' 2023-10-05T15:58:11,008 adding 'sequana/freebayes_bcf_filter.py' 2023-10-05T15:58:11,010 adding 'sequana/freebayes_vcf_filter.py' 2023-10-05T15:58:11,012 adding 'sequana/frip.py' 2023-10-05T15:58:11,013 adding 'sequana/genbank.py' 2023-10-05T15:58:11,016 adding 'sequana/gff3.py' 2023-10-05T15:58:11,018 adding 'sequana/gtf_fixer.py' 2023-10-05T15:58:11,019 adding 'sequana/homer.py' 2023-10-05T15:58:11,021 adding 'sequana/idr.py' 2023-10-05T15:58:11,023 adding 'sequana/iem.py' 2023-10-05T15:58:11,026 adding 'sequana/isoseq.py' 2023-10-05T15:58:11,027 adding 'sequana/itol.py' 2023-10-05T15:58:11,029 adding 'sequana/iuapc.py' 2023-10-05T15:58:11,030 adding 'sequana/kegg.py' 2023-10-05T15:58:11,031 adding 'sequana/kmer.py' 2023-10-05T15:58:11,033 adding 'sequana/krona.py' 2023-10-05T15:58:11,035 adding 'sequana/laa.py' 2023-10-05T15:58:11,036 adding 'sequana/lazy.py' 2023-10-05T15:58:11,037 adding 'sequana/lazyimports.py' 2023-10-05T15:58:11,039 adding 'sequana/macs3.py' 2023-10-05T15:58:11,041 adding 'sequana/mgi.py' 2023-10-05T15:58:11,042 adding 'sequana/mh.py' 2023-10-05T15:58:11,043 adding 'sequana/misc.py' 2023-10-05T15:58:11,045 adding 'sequana/mixture.py' 2023-10-05T15:58:11,050 adding 'sequana/pacbio.py' 2023-10-05T15:58:11,052 adding 'sequana/pacbio_amplicon.py' 2023-10-05T15:58:11,055 adding 'sequana/phantom.py' 2023-10-05T15:58:11,057 adding 'sequana/phred.py' 2023-10-05T15:58:11,058 adding 'sequana/protein.py' 2023-10-05T15:58:11,060 adding 'sequana/ribodesigner.py' 2023-10-05T15:58:11,066 adding 'sequana/rnadiff.py' 2023-10-05T15:58:11,068 adding 'sequana/running_median.py' 2023-10-05T15:58:11,070 adding 'sequana/salmon.py' 2023-10-05T15:58:11,074 adding 'sequana/sequence.py' 2023-10-05T15:58:11,076 adding 'sequana/sniffer.py' 2023-10-05T15:58:11,078 adding 'sequana/snpeff.py' 2023-10-05T15:58:11,079 adding 'sequana/stats.py' 2023-10-05T15:58:11,080 adding 'sequana/summary.py' 2023-10-05T15:58:11,083 adding 'sequana/taxonomy.py' 2023-10-05T15:58:11,086 adding 'sequana/tools.py' 2023-10-05T15:58:11,087 adding 'sequana/trf.py' 2023-10-05T15:58:11,089 adding 'sequana/vcf_filter.py' 2023-10-05T15:58:11,091 adding 'sequana/vcftools.py' 2023-10-05T15:58:11,093 adding 'sequana/vst.py' 2023-10-05T15:58:11,094 adding 'sequana/enrichment/__init__.py' 2023-10-05T15:58:11,095 adding 'sequana/enrichment/gsea.py' 2023-10-05T15:58:11,099 adding 'sequana/enrichment/kegg.py' 2023-10-05T15:58:11,101 adding 'sequana/enrichment/mart.py' 2023-10-05T15:58:11,102 adding 'sequana/enrichment/ontology.py' 2023-10-05T15:58:11,105 adding 'sequana/enrichment/panther.py' 2023-10-05T15:58:11,106 adding 'sequana/enrichment/plot_go_terms.py' 2023-10-05T15:58:11,108 adding 'sequana/enrichment/quickgo.py' 2023-10-05T15:58:11,110 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-10-05T15:58:11,112 adding 'sequana/kraken/__init__.py' 2023-10-05T15:58:11,118 adding 'sequana/kraken/analysis.py' 2023-10-05T15:58:11,120 adding 'sequana/kraken/multikraken.py' 2023-10-05T15:58:11,122 adding 'sequana/modules_report/__init__.py' 2023-10-05T15:58:11,123 adding 'sequana/modules_report/bamqc.py' 2023-10-05T15:58:11,125 adding 'sequana/modules_report/base_module.py' 2023-10-05T15:58:11,126 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-10-05T15:58:11,130 adding 'sequana/modules_report/coverage.py' 2023-10-05T15:58:11,133 adding 'sequana/modules_report/cutadapt.py' 2023-10-05T15:58:11,135 adding 'sequana/modules_report/fastq_stats.py' 2023-10-05T15:58:11,136 adding 'sequana/modules_report/fastqc.py' 2023-10-05T15:58:11,138 adding 'sequana/modules_report/joint_calling.py' 2023-10-05T15:58:11,139 adding 'sequana/modules_report/kegg_enrichment.py' 2023-10-05T15:58:11,141 adding 'sequana/modules_report/kraken.py' 2023-10-05T15:58:11,143 adding 'sequana/modules_report/multi_summary.py' 2023-10-05T15:58:11,145 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-10-05T15:58:11,147 adding 'sequana/modules_report/panther_enrichment.py' 2023-10-05T15:58:11,148 adding 'sequana/modules_report/phix.py' 2023-10-05T15:58:11,149 adding 'sequana/modules_report/quast.py' 2023-10-05T15:58:11,152 adding 'sequana/modules_report/rnadiff.py' 2023-10-05T15:58:11,154 adding 'sequana/modules_report/summary.py' 2023-10-05T15:58:11,156 adding 'sequana/modules_report/trf.py' 2023-10-05T15:58:11,157 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-10-05T15:58:11,159 adding 'sequana/modules_report/variant_calling.py' 2023-10-05T15:58:11,160 adding 'sequana/multiqc/__init__.py' 2023-10-05T15:58:11,162 adding 'sequana/multiqc/bamtools_stats.py' 2023-10-05T15:58:11,163 adding 'sequana/multiqc/config.py' 2023-10-05T15:58:11,165 adding 'sequana/multiqc/coverage.py' 2023-10-05T15:58:11,167 adding 'sequana/multiqc/isoseq.py' 2023-10-05T15:58:11,169 adding 'sequana/multiqc/isoseq_qc.py' 2023-10-05T15:58:11,170 adding 'sequana/multiqc/kraken.py' 2023-10-05T15:58:11,172 adding 'sequana/multiqc/laa.py' 2023-10-05T15:58:11,173 adding 'sequana/multiqc/multiqc_config.yaml' 2023-10-05T15:58:11,174 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-10-05T15:58:11,176 adding 'sequana/multiqc/pacbio_qc.py' 2023-10-05T15:58:11,177 adding 'sequana/multiqc/plots.py' 2023-10-05T15:58:11,179 adding 'sequana/multiqc/quality_control.py' 2023-10-05T15:58:11,180 adding 'sequana/plots/__init__.py' 2023-10-05T15:58:11,182 adding 'sequana/plots/canvasjs_base.py' 2023-10-05T15:58:11,183 adding 'sequana/plots/canvasjs_linegraph.py' 2023-10-05T15:58:11,185 adding 'sequana/resources/__init__.py' 2023-10-05T15:58:11,186 adding 'sequana/resources/canvas/__init__.py' 2023-10-05T15:58:11,187 adding 'sequana/resources/canvas/bar.py' 2023-10-05T15:58:11,189 adding 'sequana/resources/css/__init__.py' 2023-10-05T15:58:11,198 adding 'sequana/resources/css/bootstrap.min.css' 2023-10-05T15:58:11,201 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-10-05T15:58:11,202 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-10-05T15:58:11,204 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-10-05T15:58:11,205 adding 'sequana/resources/css/report.css' 2023-10-05T15:58:11,218 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-10-05T15:58:11,232 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-10-05T15:58:11,234 adding 'sequana/resources/data/README.rst' 2023-10-05T15:58:11,236 adding 'sequana/resources/data/__init__.py' 2023-10-05T15:58:11,294 adding 'sequana/resources/data/kegg.csv' 2023-10-05T15:58:11,304 adding 'sequana/resources/data/measles.fa' 2023-10-05T15:58:11,306 adding 'sequana/resources/data/panther.csv' 2023-10-05T15:58:11,309 adding 'sequana/resources/data/phiX174.fa' 2023-10-05T15:58:11,369 adding 'sequana/resources/data/virus.bed' 2023-10-05T15:58:11,373 adding 'sequana/resources/doc/__init__.py' 2023-10-05T15:58:11,374 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-10-05T15:58:11,376 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-10-05T15:58:11,377 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-10-05T15:58:11,378 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-10-05T15:58:11,380 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-10-05T15:58:11,381 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-10-05T15:58:11,383 adding 'sequana/resources/examples/README.rst' 2023-10-05T15:58:11,384 adding 'sequana/resources/examples/__init__.py' 2023-10-05T15:58:11,387 adding 'sequana/resources/examples/test.fastq.gz' 2023-10-05T15:58:11,388 adding 'sequana/resources/examples/test_kraken.out' 2023-10-05T15:58:11,394 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-10-05T15:58:11,395 adding 'sequana/resources/images/__init__.py' 2023-10-05T15:58:11,404 adding 'sequana/resources/images/logo_256x256.png' 2023-10-05T15:58:11,406 adding 'sequana/resources/images/no_data.jpg' 2023-10-05T15:58:11,408 adding 'sequana/resources/images/no_data.png' 2023-10-05T15:58:11,409 adding 'sequana/resources/js/__init__.py' 2023-10-05T15:58:11,414 adding 'sequana/resources/js/bootstrap.min.js' 2023-10-05T15:58:11,416 adding 'sequana/resources/js/buttons.html5.min.js' 2023-10-05T15:58:11,418 adding 'sequana/resources/js/buttons.print.min.js' 2023-10-05T15:58:11,440 adding 'sequana/resources/js/canvasjs.min.js' 2023-10-05T15:58:11,445 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-10-05T15:58:11,486 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-10-05T15:58:11,500 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-10-05T15:58:11,513 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-10-05T15:58:11,527 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-10-05T15:58:11,539 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-10-05T15:58:11,541 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-10-05T15:58:11,542 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-10-05T15:58:11,545 adding 'sequana/resources/js/papaparse.min.js' 2023-10-05T15:58:11,546 adding 'sequana/resources/snpeff/__init__.py' 2023-10-05T15:58:11,548 adding 'sequana/resources/snpeff/snpEff.config' 2023-10-05T15:58:11,550 adding 'sequana/resources/templates/__init__.py' 2023-10-05T15:58:11,551 adding 'sequana/resources/templates/base.html' 2023-10-05T15:58:11,552 adding 'sequana/resources/templates/joint_calling.html' 2023-10-05T15:58:11,554 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-10-05T15:58:11,555 adding 'sequana/resources/templates/standard.html' 2023-10-05T15:58:11,557 adding 'sequana/resources/templates/vcf_diff.html' 2023-10-05T15:58:11,558 adding 'sequana/resources/testing/README.rst' 2023-10-05T15:58:11,560 adding 'sequana/resources/testing/__init__.py' 2023-10-05T15:58:11,561 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-10-05T15:58:11,568 adding 'sequana/resources/testing/test.fasta' 2023-10-05T15:58:11,581 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-10-05T15:58:11,586 adding 'sequana/resources/testing/test_blast_local.xml' 2023-10-05T15:58:11,619 adding 'sequana/resources/testing/test_coverage.csv' 2023-10-05T15:58:11,623 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-10-05T15:58:11,624 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-10-05T15:58:11,625 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-10-05T15:58:11,627 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-10-05T15:58:11,628 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-10-05T15:58:11,629 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-10-05T15:58:11,630 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-10-05T15:58:11,632 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-10-05T15:58:11,633 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-10-05T15:58:11,634 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-10-05T15:58:11,856 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-10-05T15:58:11,862 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-10-05T15:58:11,864 adding 'sequana/rules/README.rst' 2023-10-05T15:58:11,865 adding 'sequana/rules/__init__.py' 2023-10-05T15:58:11,866 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-10-05T15:58:11,868 adding 'sequana/rules/Pacbio/__init__.py' 2023-10-05T15:58:11,870 adding 'sequana/rules/SARTools/SARTools.rules' 2023-10-05T15:58:11,871 adding 'sequana/rules/SnpEff/__init__.py' 2023-10-05T15:58:11,873 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-10-05T15:58:11,875 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-10-05T15:58:11,877 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-10-05T15:58:11,879 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-10-05T15:58:11,880 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-10-05T15:58:11,882 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-10-05T15:58:11,883 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-10-05T15:58:11,885 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-10-05T15:58:11,886 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-10-05T15:58:11,888 adding 'sequana/rules/codecs/__init__.py' 2023-10-05T15:58:11,889 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-10-05T15:58:11,890 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-10-05T15:58:11,892 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-10-05T15:58:11,893 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-10-05T15:58:11,895 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-10-05T15:58:11,896 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-10-05T15:58:11,897 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-10-05T15:58:11,899 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-10-05T15:58:11,900 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-10-05T15:58:11,901 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-10-05T15:58:11,903 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2023-10-05T15:58:11,905 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-10-05T15:58:11,906 adding 'sequana/rules/deeptools/__init__.py' 2023-10-05T15:58:11,907 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-10-05T15:58:11,909 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-10-05T15:58:11,910 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-10-05T15:58:11,912 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-10-05T15:58:11,913 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-10-05T15:58:11,915 adding 'sequana/rules/fastp/fastp.rules' 2023-10-05T15:58:11,916 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-10-05T15:58:11,918 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-10-05T15:58:11,920 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-10-05T15:58:11,921 adding 'sequana/rules/fastqc/fastqc.rules' 2023-10-05T15:58:11,923 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-10-05T15:58:11,924 adding 'sequana/rules/freebayes/freebayes.rules' 2023-10-05T15:58:11,926 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-10-05T15:58:11,927 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2023-10-05T15:58:11,929 adding 'sequana/rules/idr/__init__.py' 2023-10-05T15:58:11,930 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-10-05T15:58:11,932 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-10-05T15:58:11,934 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-10-05T15:58:11,936 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-10-05T15:58:11,937 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-10-05T15:58:11,939 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-10-05T15:58:11,940 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-10-05T15:58:11,942 adding 'sequana/rules/igvtools/igvtools.rules' 2023-10-05T15:58:11,944 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-10-05T15:58:11,945 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-10-05T15:58:11,947 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-10-05T15:58:11,949 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-10-05T15:58:11,950 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-10-05T15:58:11,952 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-10-05T15:58:11,954 adding 'sequana/rules/multiqc/multiqc.rules' 2023-10-05T15:58:11,955 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2023-10-05T15:58:11,956 adding 'sequana/rules/multiqc2/multiqc2.rules' 2023-10-05T15:58:11,958 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-10-05T15:58:11,960 adding 'sequana/rules/picard-tools/__init__.py' 2023-10-05T15:58:11,961 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-10-05T15:58:11,963 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-10-05T15:58:11,964 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-10-05T15:58:11,965 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-10-05T15:58:11,967 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-10-05T15:58:11,968 adding 'sequana/rules/prokka/prokka.rules' 2023-10-05T15:58:11,970 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-10-05T15:58:11,971 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-10-05T15:58:11,973 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-10-05T15:58:11,974 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-10-05T15:58:11,976 adding 'sequana/rules/sambamba/__init__.py' 2023-10-05T15:58:11,977 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2023-10-05T15:58:11,979 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2023-10-05T15:58:11,980 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2023-10-05T15:58:11,982 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-10-05T15:58:11,983 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-10-05T15:58:11,985 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-10-05T15:58:11,986 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-10-05T15:58:11,987 adding 'sequana/scripts/__init__.py' 2023-10-05T15:58:11,989 adding 'sequana/scripts/common.py' 2023-10-05T15:58:11,992 adding 'sequana/scripts/coverage.py' 2023-10-05T15:58:11,993 adding 'sequana/scripts/substractor.py' 2023-10-05T15:58:11,996 adding 'sequana/scripts/taxonomy.py' 2023-10-05T15:58:11,997 adding 'sequana/scripts/main/__init__.py' 2023-10-05T15:58:11,998 adding 'sequana/scripts/main/biomart.py' 2023-10-05T15:58:12,000 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-10-05T15:58:12,002 adding 'sequana/scripts/main/enrichment_panther.py' 2023-10-05T15:58:12,003 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-10-05T15:58:12,005 adding 'sequana/scripts/main/fasta.py' 2023-10-05T15:58:12,006 adding 'sequana/scripts/main/fastq.py' 2023-10-05T15:58:12,007 adding 'sequana/scripts/main/feature_count.py' 2023-10-05T15:58:12,009 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-10-05T15:58:12,010 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-10-05T15:58:12,011 adding 'sequana/scripts/main/gtf_fixer.py' 2023-10-05T15:58:12,013 adding 'sequana/scripts/main/lane_merging.py' 2023-10-05T15:58:12,014 adding 'sequana/scripts/main/main.py' 2023-10-05T15:58:12,016 adding 'sequana/scripts/main/mapping.py' 2023-10-05T15:58:12,017 adding 'sequana/scripts/main/ribodesigner.py' 2023-10-05T15:58:12,019 adding 'sequana/scripts/main/rnadiff.py' 2023-10-05T15:58:12,021 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-10-05T15:58:12,022 adding 'sequana/scripts/main/salmon.py' 2023-10-05T15:58:12,023 adding 'sequana/scripts/main/samplesheet.py' 2023-10-05T15:58:12,025 adding 'sequana/scripts/main/summary.py' 2023-10-05T15:58:12,026 adding 'sequana/scripts/main/taxonomy.py' 2023-10-05T15:58:12,027 adding 'sequana/scripts/main/utils.py' 2023-10-05T15:58:12,029 adding 'sequana/scripts/main/variants_comparison.py' 2023-10-05T15:58:12,030 adding 'sequana/utils/__init__.py' 2023-10-05T15:58:12,031 adding 'sequana/utils/config.py' 2023-10-05T15:58:12,033 adding 'sequana/utils/datatables_js.py' 2023-10-05T15:58:12,035 adding 'sequana/utils/df2html.py' 2023-10-05T15:58:12,036 adding 'sequana/utils/pandas.py' 2023-10-05T15:58:12,037 adding 'sequana/utils/singleton.py' 2023-10-05T15:58:12,038 adding 'sequana/utils/tree.py' 2023-10-05T15:58:12,040 adding 'sequana/viz/__init__.py' 2023-10-05T15:58:12,041 adding 'sequana/viz/anova.py' 2023-10-05T15:58:12,042 adding 'sequana/viz/boxplot.py' 2023-10-05T15:58:12,044 adding 'sequana/viz/clusterisation.py' 2023-10-05T15:58:12,045 adding 'sequana/viz/core.py' 2023-10-05T15:58:12,047 adding 'sequana/viz/corrplot.py' 2023-10-05T15:58:12,049 adding 'sequana/viz/dendogram.py' 2023-10-05T15:58:12,052 adding 'sequana/viz/heatmap.py' 2023-10-05T15:58:12,054 adding 'sequana/viz/hinton.py' 2023-10-05T15:58:12,055 adding 'sequana/viz/hist2d.py' 2023-10-05T15:58:12,056 adding 'sequana/viz/imshow.py' 2023-10-05T15:58:12,058 adding 'sequana/viz/isomap.py' 2023-10-05T15:58:12,059 adding 'sequana/viz/linkage.py' 2023-10-05T15:58:12,061 adding 'sequana/viz/mds.py' 2023-10-05T15:58:12,062 adding 'sequana/viz/pca.py' 2023-10-05T15:58:12,064 adding 'sequana/viz/plotly.py' 2023-10-05T15:58:12,065 adding 'sequana/viz/scatter.py' 2023-10-05T15:58:12,066 adding 'sequana/viz/venn.py' 2023-10-05T15:58:12,068 adding 'sequana/viz/volcano.py' 2023-10-05T15:58:12,070 adding 'sequana-0.15.4.dist-info/LICENSE' 2023-10-05T15:58:12,072 adding 'sequana-0.15.4.dist-info/METADATA' 2023-10-05T15:58:12,074 adding 'sequana-0.15.4.dist-info/WHEEL' 2023-10-05T15:58:12,074 adding 'sequana-0.15.4.dist-info/entry_points.txt' 2023-10-05T15:58:12,076 adding 'sequana-0.15.4.dist-info/top_level.txt' 2023-10-05T15:58:12,081 adding 'sequana-0.15.4.dist-info/RECORD' 2023-10-05T15:58:12,105 removing build/bdist.linux-armv7l/wheel 2023-10-05T15:58:12,324 Building wheel for sequana (setup.py): finished with status 'done' 2023-10-05T15:58:12,347 Created wheel for sequana: filename=sequana-0.15.4-py3-none-any.whl size=1775240 sha256=f1ebf1be5429511c34e25e8d3e1a7dd2b470b3d50d049da6319ea8a1a5a9f21b 2023-10-05T15:58:12,349 Stored in directory: /tmp/pip-ephem-wheel-cache-4932j869/wheels/18/59/f2/1b41323c15e2f78846c644b2d09f7a1b433fe7e8378d21f581 2023-10-05T15:58:12,373 Successfully built sequana 2023-10-05T15:58:12,422 Removed build tracker: '/tmp/pip-build-tracker-xabwryd2'