2023-10-09T01:51:16,266 Created temporary directory: /tmp/pip-build-tracker-mu1wh0sf 2023-10-09T01:51:16,267 Initialized build tracking at /tmp/pip-build-tracker-mu1wh0sf 2023-10-09T01:51:16,268 Created build tracker: /tmp/pip-build-tracker-mu1wh0sf 2023-10-09T01:51:16,268 Entered build tracker: /tmp/pip-build-tracker-mu1wh0sf 2023-10-09T01:51:16,269 Created temporary directory: /tmp/pip-wheel-nj3qkdmu 2023-10-09T01:51:16,272 Created temporary directory: /tmp/pip-ephem-wheel-cache-d18n3ezv 2023-10-09T01:51:16,294 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-09T01:51:16,297 2 location(s) to search for versions of singlem: 2023-10-09T01:51:16,297 * https://pypi.org/simple/singlem/ 2023-10-09T01:51:16,297 * https://www.piwheels.org/simple/singlem/ 2023-10-09T01:51:16,298 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2023-10-09T01:51:16,299 Getting page https://pypi.org/simple/singlem/ 2023-10-09T01:51:16,300 Found index url https://pypi.org/simple/ 2023-10-09T01:51:16,516 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2023-10-09T01:51:16,520 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2023-10-09T01:51:16,521 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2023-10-09T01:51:16,522 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2023-10-09T01:51:16,523 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2023-10-09T01:51:16,523 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2023-10-09T01:51:16,524 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2023-10-09T01:51:16,525 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2023-10-09T01:51:16,526 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2023-10-09T01:51:16,526 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,527 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2023-10-09T01:51:16,528 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,528 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2023-10-09T01:51:16,529 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,529 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2023-10-09T01:51:16,530 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,531 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2023-10-09T01:51:16,531 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,532 Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0 2023-10-09T01:51:16,533 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2023-10-09T01:51:16,533 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2023-10-09T01:51:16,534 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2023-10-09T01:51:16,534 Getting page https://www.piwheels.org/simple/singlem/ 2023-10-09T01:51:16,536 Found index url https://www.piwheels.org/simple/ 2023-10-09T01:51:16,699 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2023-10-09T01:51:16,702 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,703 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,704 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,704 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,705 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,706 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,706 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,707 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,707 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2023-10-09T01:51:16,708 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2023-10-09T01:51:16,709 Skipping link: not a file: https://pypi.org/simple/singlem/ 2023-10-09T01:51:16,729 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2023-10-09T01:51:16,746 Collecting singlem==0.15.0 2023-10-09T01:51:16,749 Created temporary directory: /tmp/pip-unpack-k0qfd1n7 2023-10-09T01:51:16,964 Downloading singlem-0.15.0.tar.gz (171 kB) 2023-10-09T01:51:17,193 Added singlem==0.15.0 from https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz to build tracker '/tmp/pip-build-tracker-mu1wh0sf' 2023-10-09T01:51:17,195 Running setup.py (path:/tmp/pip-wheel-nj3qkdmu/singlem_01f90dba927a4b7694163e41ba5b9d05/setup.py) egg_info for package singlem 2023-10-09T01:51:17,196 Created temporary directory: /tmp/pip-pip-egg-info-1iyb9zo0 2023-10-09T01:51:17,196 Preparing metadata (setup.py): started 2023-10-09T01:51:17,198 Running command python setup.py egg_info 2023-10-09T01:51:18,208 running egg_info 2023-10-09T01:51:18,210 creating /tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info 2023-10-09T01:51:18,234 writing /tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/PKG-INFO 2023-10-09T01:51:18,238 writing dependency_links to /tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/dependency_links.txt 2023-10-09T01:51:18,240 writing requirements to /tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/requires.txt 2023-10-09T01:51:18,241 writing top-level names to /tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/top_level.txt 2023-10-09T01:51:18,243 writing manifest file '/tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/SOURCES.txt' 2023-10-09T01:51:18,348 reading manifest file '/tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/SOURCES.txt' 2023-10-09T01:51:18,349 reading manifest template 'MANIFEST.in' 2023-10-09T01:51:18,350 warning: no files found matching 'LICENSE' 2023-10-09T01:51:18,351 warning: no previously-included files matching '*' found under directory 'test' 2023-10-09T01:51:18,352 adding license file 'LICENCE.txt' 2023-10-09T01:51:18,355 writing manifest file '/tmp/pip-pip-egg-info-1iyb9zo0/singlem.egg-info/SOURCES.txt' 2023-10-09T01:51:18,464 Preparing metadata (setup.py): finished with status 'done' 2023-10-09T01:51:18,468 Source in /tmp/pip-wheel-nj3qkdmu/singlem_01f90dba927a4b7694163e41ba5b9d05 has version 0.15.0, which satisfies requirement singlem==0.15.0 from https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz 2023-10-09T01:51:18,469 Removed singlem==0.15.0 from https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz from build tracker '/tmp/pip-build-tracker-mu1wh0sf' 2023-10-09T01:51:18,474 Created temporary directory: /tmp/pip-unpack-di73f1ov 2023-10-09T01:51:18,475 Created temporary directory: /tmp/pip-unpack-27tz1zje 2023-10-09T01:51:18,492 Building wheels for collected packages: singlem 2023-10-09T01:51:18,496 Created temporary directory: /tmp/pip-wheel-cxfkpb0s 2023-10-09T01:51:18,497 Building wheel for singlem (setup.py): started 2023-10-09T01:51:18,498 Destination directory: /tmp/pip-wheel-cxfkpb0s 2023-10-09T01:51:18,499 Running command python setup.py bdist_wheel 2023-10-09T01:51:19,479 running bdist_wheel 2023-10-09T01:51:19,569 running build 2023-10-09T01:51:19,570 running build_py 2023-10-09T01:51:19,597 creating build 2023-10-09T01:51:19,598 creating build/lib 2023-10-09T01:51:19,599 creating build/lib/singlem 2023-10-09T01:51:19,600 copying singlem/archive_otu_table.py -> build/lib/singlem 2023-10-09T01:51:19,603 copying singlem/graftm_result.py -> build/lib/singlem 2023-10-09T01:51:19,604 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2023-10-09T01:51:19,606 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2023-10-09T01:51:19,608 copying singlem/singlem.py -> build/lib/singlem 2023-10-09T01:51:19,610 copying singlem/package_creator.py -> build/lib/singlem 2023-10-09T01:51:19,612 copying singlem/condense.py -> build/lib/singlem 2023-10-09T01:51:19,615 copying singlem/otu_table_entry.py -> build/lib/singlem 2023-10-09T01:51:19,617 copying singlem/querier.py -> build/lib/singlem 2023-10-09T01:51:19,619 copying singlem/read_fraction.py -> build/lib/singlem 2023-10-09T01:51:19,621 copying singlem/supplement.py -> build/lib/singlem 2023-10-09T01:51:19,624 copying singlem/renew.py -> build/lib/singlem 2023-10-09T01:51:19,626 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2023-10-09T01:51:19,628 copying singlem/diamond_parser.py -> build/lib/singlem 2023-10-09T01:51:19,629 copying singlem/checkm2.py -> build/lib/singlem 2023-10-09T01:51:19,631 copying singlem/__init__.py -> build/lib/singlem 2023-10-09T01:51:19,632 copying singlem/sequence_classes.py -> build/lib/singlem 2023-10-09T01:51:19,634 copying singlem/otu_table_collection.py -> build/lib/singlem 2023-10-09T01:51:19,636 copying singlem/singlem_package.py -> build/lib/singlem 2023-10-09T01:51:19,639 copying singlem/otu_table.py -> build/lib/singlem 2023-10-09T01:51:19,641 copying singlem/strain_summariser.py -> build/lib/singlem 2023-10-09T01:51:19,643 copying singlem/regenerator.py -> build/lib/singlem 2023-10-09T01:51:19,645 copying singlem/clusterer.py -> build/lib/singlem 2023-10-09T01:51:19,647 copying singlem/genome_size.py -> build/lib/singlem 2023-10-09T01:51:19,649 copying singlem/orf_length_checker.py -> build/lib/singlem 2023-10-09T01:51:19,650 copying singlem/kingfisher_sra.py -> build/lib/singlem 2023-10-09T01:51:19,652 copying singlem/summariser.py -> build/lib/singlem 2023-10-09T01:51:19,655 copying singlem/version.py -> build/lib/singlem 2023-10-09T01:51:19,656 copying singlem/singlem_database_models.py -> build/lib/singlem 2023-10-09T01:51:19,658 copying singlem/pipe.py -> build/lib/singlem 2023-10-09T01:51:19,662 copying singlem/query_formatters.py -> build/lib/singlem 2023-10-09T01:51:19,664 copying singlem/rarefier.py -> build/lib/singlem 2023-10-09T01:51:19,665 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2023-10-09T01:51:19,668 copying singlem/placement_parser.py -> build/lib/singlem 2023-10-09T01:51:19,670 copying singlem/appraiser.py -> build/lib/singlem 2023-10-09T01:51:19,672 copying singlem/known_otu_table.py -> build/lib/singlem 2023-10-09T01:51:19,673 copying singlem/chainsaw.py -> build/lib/singlem 2023-10-09T01:51:19,675 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2023-10-09T01:51:19,678 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2023-10-09T01:51:19,680 copying singlem/taxonomy.py -> build/lib/singlem 2023-10-09T01:51:19,681 copying singlem/sequence_extractor.py -> build/lib/singlem 2023-10-09T01:51:19,683 copying singlem/run_via_os_system.py -> build/lib/singlem 2023-10-09T01:51:19,684 copying singlem/sequence_database.py -> build/lib/singlem 2023-10-09T01:51:19,687 copying singlem/metapackage.py -> build/lib/singlem 2023-10-09T01:51:19,690 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2023-10-09T01:51:19,691 copying singlem/ordered_set.py -> build/lib/singlem 2023-10-09T01:51:19,693 copying singlem/appraisal_result.py -> build/lib/singlem 2023-10-09T01:51:19,695 copying singlem/dereplicator.py -> build/lib/singlem 2023-10-09T01:51:19,697 copying singlem/trim_package_hmms.py -> build/lib/singlem 2023-10-09T01:51:19,700 creating build/lib/singlem/biolib_lite 2023-10-09T01:51:19,701 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,703 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,705 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,707 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,708 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,710 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,711 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,713 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,715 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,717 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,719 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2023-10-09T01:51:19,721 running egg_info 2023-10-09T01:51:19,774 writing singlem.egg-info/PKG-INFO 2023-10-09T01:51:19,777 writing dependency_links to singlem.egg-info/dependency_links.txt 2023-10-09T01:51:19,779 writing requirements to singlem.egg-info/requires.txt 2023-10-09T01:51:19,780 writing top-level names to singlem.egg-info/top_level.txt 2023-10-09T01:51:19,808 reading manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-09T01:51:19,811 reading manifest template 'MANIFEST.in' 2023-10-09T01:51:19,812 warning: no files found matching 'LICENSE' 2023-10-09T01:51:19,812 warning: no previously-included files matching '*' found under directory 'test' 2023-10-09T01:51:19,813 adding license file 'LICENCE.txt' 2023-10-09T01:51:19,816 writing manifest file 'singlem.egg-info/SOURCES.txt' 2023-10-09T01:51:19,821 running build_scripts 2023-10-09T01:51:19,822 creating build/scripts-3.11 2023-10-09T01:51:19,823 copying and adjusting bin/singlem -> build/scripts-3.11 2023-10-09T01:51:19,827 changing mode of build/scripts-3.11/singlem from 644 to 755 2023-10-09T01:51:19,850 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-09T01:51:19,851 !! 2023-10-09T01:51:19,852 ******************************************************************************** 2023-10-09T01:51:19,852 Please avoid running ``setup.py`` directly. 2023-10-09T01:51:19,853 Instead, use pypa/build, pypa/installer or other 2023-10-09T01:51:19,853 standards-based tools. 2023-10-09T01:51:19,854 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-09T01:51:19,855 ******************************************************************************** 2023-10-09T01:51:19,856 !! 2023-10-09T01:51:19,856 self.initialize_options() 2023-10-09T01:51:19,874 installing to build/bdist.linux-armv7l/wheel 2023-10-09T01:51:19,875 running install 2023-10-09T01:51:19,899 running install_lib 2023-10-09T01:51:19,923 creating build/bdist.linux-armv7l 2023-10-09T01:51:19,923 creating build/bdist.linux-armv7l/wheel 2023-10-09T01:51:19,925 creating build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,926 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,928 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,930 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,932 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,934 copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,936 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,939 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,942 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,944 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,947 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,949 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,952 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,955 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,956 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,958 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,960 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,962 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,964 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,966 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,969 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,971 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,973 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,976 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:19,978 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,979 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,981 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,983 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,986 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,987 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,990 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,992 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,994 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:19,997 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:20,000 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:20,003 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2023-10-09T01:51:20,005 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,007 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,009 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,012 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,015 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,017 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,019 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,023 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,025 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,027 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,030 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,032 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,035 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,037 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,039 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,042 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,044 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,046 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,048 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,050 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,052 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,055 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,057 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,059 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,061 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,063 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2023-10-09T01:51:20,065 running install_data 2023-10-09T01:51:20,090 creating build/bdist.linux-armv7l/wheel/singlem-0.15.0.data 2023-10-09T01:51:20,091 creating build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/data 2023-10-09T01:51:20,092 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/data/. 2023-10-09T01:51:20,094 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/data/. 2023-10-09T01:51:20,097 running install_egg_info 2023-10-09T01:51:20,127 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.15.0-py3.11.egg-info 2023-10-09T01:51:20,136 running install_scripts 2023-10-09T01:51:20,138 creating build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/scripts 2023-10-09T01:51:20,139 copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/scripts 2023-10-09T01:51:20,142 changing mode of build/bdist.linux-armv7l/wheel/singlem-0.15.0.data/scripts/singlem to 755 2023-10-09T01:51:20,160 creating build/bdist.linux-armv7l/wheel/singlem-0.15.0.dist-info/WHEEL 2023-10-09T01:51:20,162 creating '/tmp/pip-wheel-cxfkpb0s/singlem-0.15.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-09T01:51:20,165 adding 'singlem/__init__.py' 2023-10-09T01:51:20,168 adding 'singlem/appraisal_result.py' 2023-10-09T01:51:20,171 adding 'singlem/appraiser.py' 2023-10-09T01:51:20,172 adding 'singlem/archive_otu_table.py' 2023-10-09T01:51:20,174 adding 'singlem/chainsaw.py' 2023-10-09T01:51:20,176 adding 'singlem/checkm2.py' 2023-10-09T01:51:20,178 adding 'singlem/clusterer.py' 2023-10-09T01:51:20,184 adding 'singlem/condense.py' 2023-10-09T01:51:20,185 adding 'singlem/dereplicator.py' 2023-10-09T01:51:20,187 adding 'singlem/diamond_parser.py' 2023-10-09T01:51:20,188 adding 'singlem/diamond_spkg_searcher.py' 2023-10-09T01:51:20,190 adding 'singlem/genome_size.py' 2023-10-09T01:51:20,191 adding 'singlem/graftm_result.py' 2023-10-09T01:51:20,193 adding 'singlem/kingfisher_sra.py' 2023-10-09T01:51:20,194 adding 'singlem/known_otu_table.py' 2023-10-09T01:51:20,196 adding 'singlem/metagenome_otu_finder.py' 2023-10-09T01:51:20,199 adding 'singlem/metapackage.py' 2023-10-09T01:51:20,200 adding 'singlem/metapackage_read_name_store.py' 2023-10-09T01:51:20,202 adding 'singlem/ordered_set.py' 2023-10-09T01:51:20,203 adding 'singlem/orf_length_checker.py' 2023-10-09T01:51:20,204 adding 'singlem/otu_table.py' 2023-10-09T01:51:20,206 adding 'singlem/otu_table_collection.py' 2023-10-09T01:51:20,208 adding 'singlem/otu_table_entry.py' 2023-10-09T01:51:20,209 adding 'singlem/package_creator.py' 2023-10-09T01:51:20,219 adding 'singlem/pipe.py' 2023-10-09T01:51:20,223 adding 'singlem/pipe_sequence_extractor.py' 2023-10-09T01:51:20,225 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2023-10-09T01:51:20,226 adding 'singlem/placement_parser.py' 2023-10-09T01:51:20,230 adding 'singlem/querier.py' 2023-10-09T01:51:20,232 adding 'singlem/query_formatters.py' 2023-10-09T01:51:20,233 adding 'singlem/rarefier.py' 2023-10-09T01:51:20,235 adding 'singlem/read_fraction.py' 2023-10-09T01:51:20,237 adding 'singlem/regenerator.py' 2023-10-09T01:51:20,238 adding 'singlem/renew.py' 2023-10-09T01:51:20,240 adding 'singlem/run_via_os_system.py' 2023-10-09T01:51:20,241 adding 'singlem/sequence_classes.py' 2023-10-09T01:51:20,246 adding 'singlem/sequence_database.py' 2023-10-09T01:51:20,248 adding 'singlem/sequence_extractor.py' 2023-10-09T01:51:20,249 adding 'singlem/singlem.py' 2023-10-09T01:51:20,251 adding 'singlem/singlem_database_models.py' 2023-10-09T01:51:20,253 adding 'singlem/singlem_package.py' 2023-10-09T01:51:20,254 adding 'singlem/strain_summariser.py' 2023-10-09T01:51:20,255 adding 'singlem/streaming_hmm_search_result.py' 2023-10-09T01:51:20,258 adding 'singlem/summariser.py' 2023-10-09T01:51:20,263 adding 'singlem/supplement.py' 2023-10-09T01:51:20,265 adding 'singlem/taxonomy.py' 2023-10-09T01:51:20,266 adding 'singlem/taxonomy_bihash.py' 2023-10-09T01:51:20,267 adding 'singlem/trim_package_hmms.py' 2023-10-09T01:51:20,269 adding 'singlem/version.py' 2023-10-09T01:51:20,270 adding 'singlem/biolib_lite/__init__.py' 2023-10-09T01:51:20,272 adding 'singlem/biolib_lite/common.py' 2023-10-09T01:51:20,273 adding 'singlem/biolib_lite/custom_help_formatter.py' 2023-10-09T01:51:20,274 adding 'singlem/biolib_lite/exceptions.py' 2023-10-09T01:51:20,276 adding 'singlem/biolib_lite/execute.py' 2023-10-09T01:51:20,278 adding 'singlem/biolib_lite/logger.py' 2023-10-09T01:51:20,279 adding 'singlem/biolib_lite/newick.py' 2023-10-09T01:51:20,281 adding 'singlem/biolib_lite/parallel.py' 2023-10-09T01:51:20,283 adding 'singlem/biolib_lite/prodigal_biolib.py' 2023-10-09T01:51:20,285 adding 'singlem/biolib_lite/seq_io.py' 2023-10-09T01:51:20,288 adding 'singlem/biolib_lite/taxonomy.py' 2023-10-09T01:51:20,295 adding 'singlem-0.15.0.data/data/LICENCE.txt' 2023-10-09T01:51:20,297 adding 'singlem-0.15.0.data/data/README.md' 2023-10-09T01:51:20,306 adding 'singlem-0.15.0.data/scripts/singlem' 2023-10-09T01:51:20,313 adding 'singlem-0.15.0.dist-info/LICENCE.txt' 2023-10-09T01:51:20,315 adding 'singlem-0.15.0.dist-info/METADATA' 2023-10-09T01:51:20,316 adding 'singlem-0.15.0.dist-info/WHEEL' 2023-10-09T01:51:20,317 adding 'singlem-0.15.0.dist-info/top_level.txt' 2023-10-09T01:51:20,318 adding 'singlem-0.15.0.dist-info/RECORD' 2023-10-09T01:51:20,323 removing build/bdist.linux-armv7l/wheel 2023-10-09T01:51:20,453 Building wheel for singlem (setup.py): finished with status 'done' 2023-10-09T01:51:20,458 Created wheel for singlem: filename=singlem-0.15.0-py3-none-any.whl size=207330 sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 2023-10-09T01:51:20,460 Stored in directory: /tmp/pip-ephem-wheel-cache-d18n3ezv/wheels/81/06/e9/8ab12925b576b03ce98d211545bc432d061ac7ef3c42cd0b9f 2023-10-09T01:51:20,472 Successfully built singlem 2023-10-09T01:51:20,482 Removed build tracker: '/tmp/pip-build-tracker-mu1wh0sf'