2023-10-09T16:06:09,844 Created temporary directory: /tmp/pip-build-tracker-zujw8m2s
2023-10-09T16:06:09,845 Initialized build tracking at /tmp/pip-build-tracker-zujw8m2s
2023-10-09T16:06:09,845 Created build tracker: /tmp/pip-build-tracker-zujw8m2s
2023-10-09T16:06:09,846 Entered build tracker: /tmp/pip-build-tracker-zujw8m2s
2023-10-09T16:06:09,847 Created temporary directory: /tmp/pip-wheel-6rr_r_3f
2023-10-09T16:06:09,850 Created temporary directory: /tmp/pip-ephem-wheel-cache-msq9g76d
2023-10-09T16:06:09,874 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-09T16:06:09,878 2 location(s) to search for versions of depht:
2023-10-09T16:06:09,878 * https://pypi.org/simple/depht/
2023-10-09T16:06:09,878 * https://www.piwheels.org/simple/depht/
2023-10-09T16:06:09,879 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2023-10-09T16:06:09,879 Getting page https://pypi.org/simple/depht/
2023-10-09T16:06:09,881 Found index url https://pypi.org/simple/
2023-10-09T16:06:10,103 Fetched page https://pypi.org/simple/depht/ as application/vnd.pypi.simple.v1+json
2023-10-09T16:06:10,108   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,109   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2023-10-09T16:06:10,110   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,111   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2023-10-09T16:06:10,111   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,112   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2023-10-09T16:06:10,113   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,114   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2023-10-09T16:06:10,115   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/cc/b2/c5f4eb7fdc8eb091a14a01cba0e3a2a5756757cc34aa7b92289d00df78ad/depht-1.1.2-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,116   Found link https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.2
2023-10-09T16:06:10,117   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/60/d5/af28d08aaa5b708043ae39ea37550e1c81812cbc01034feedd74bbcadbfb/depht-1.1.3-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,118   Found link https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.3
2023-10-09T16:06:10,118   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/5b/19/3421ba8ca682a4d1525bde02859ff605d6c91b3a8f75cb0215255a8d997f/depht-1.1.4-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,120   Found link https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.4
2023-10-09T16:06:10,120   Found link https://files.pythonhosted.org/packages/97/e9/2bbd3a7720ea226ccf04a701f1f05a15b6252e4b58aab2e39d3736052ad9/depht-1.1.5.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.5
2023-10-09T16:06:10,121   Found link https://files.pythonhosted.org/packages/8f/25/269c779463ffbf33d44b09ce1ee82662ad9044d80ece95157376df4cad92/depht-1.1.6.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.6
2023-10-09T16:06:10,122   Found link https://files.pythonhosted.org/packages/98/f4/5f9f1c4eb83b4a09bcd124182a2eea91d2eb29342fbbf7fe2c046955ea48/depht-1.1.7.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.7
2023-10-09T16:06:10,123   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/89/76/9f9822d20982c1b1f6c34bd2a4e1bb7009e01e078fc93e695edfb28e3ecd/depht-1.1.8-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,123   Found link https://files.pythonhosted.org/packages/cb/5f/37680d8e3ab9b5ff9d3e3090f6cb0940f26b4e21e9c238cdf90f5f1a3cd4/depht-1.1.8.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.1.8
2023-10-09T16:06:10,124   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/00/9a/ce86b92c1a380e0f2c3775feaf3c709a821d7dd5e20acf86fce30bf11efb/depht-1.2.0-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,125   Found link https://files.pythonhosted.org/packages/b0/ba/91817db56332e16164c2f39a85cf67d6c04347af82e2b020d4ca0d0a4385/depht-1.2.0.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.2.0
2023-10-09T16:06:10,126   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/6a/b3/0f21048c54d0ea2157b1f7c5e2fa1d16b5e8f06510397eaa43e47b339051/depht-1.2.1-py3-none-any.whl (from https://pypi.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,127   Found link https://files.pythonhosted.org/packages/c3/d1/a6fffbeecdeebf614fcd2abec512ba3a03991dc6f5336546db92502ba3fd/depht-1.2.1.tar.gz (from https://pypi.org/simple/depht/) (requires-python:>=3.8), version: 1.2.1
2023-10-09T16:06:10,127 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2023-10-09T16:06:10,128 Getting page https://www.piwheels.org/simple/depht/
2023-10-09T16:06:10,130 Found index url https://www.piwheels.org/simple/
2023-10-09T16:06:10,291 Fetched page https://www.piwheels.org/simple/depht/ as text/html
2023-10-09T16:06:10,296   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.2.0-py3-none-any.whl#sha256=e7c9f6710a48264f5655ca241a87cd3c7229f127b05c9536ffd1d85839dd56a3 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,296   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.8-py3-none-any.whl#sha256=7e5e1c684e3e0b02030fc80cf94055c3dc4e60e1be97ab35b1473be5676acd32 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,297   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.7-py3-none-any.whl#sha256=efef5acec57ac55426c7ce7a61f20b7dbd8be7840f599409ec4a2668609d3745 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,298   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.6-py3-none-any.whl#sha256=f5a46b7bc13a633d0b355d1a6de508bc46e14eccd0c796a2a55921df8f1a04c0 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,298   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.5-py3-none-any.whl#sha256=a3eacb5aafb5b80f2e76303fb147199323d0ba3cf9578514c79de83dd99508a2 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.8)
2023-10-09T16:06:10,299   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.4-py3-none-any.whl#sha256=1f96e29acfa9f4391253289afb40f72a20f110515574983fb9779f0b8a691c2b (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,300   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.3-py3-none-any.whl#sha256=83a6b6a0a5348682ddc18049a490aeef6eb8a9afb32f7bb4d9f283d3d603ad88 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,300   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.2-py3-none-any.whl#sha256=3483519a46f25e042f5cf9af6684ffabce759671294bc14174cfa951237458ec (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,300   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.1-py3-none-any.whl#sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,301   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,301   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,302   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2023-10-09T16:06:10,303 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2023-10-09T16:06:10,303 Skipping link: not a file: https://pypi.org/simple/depht/
2023-10-09T16:06:10,323 Given no hashes to check 1 links for project 'depht': discarding no candidates
2023-10-09T16:06:10,341 Collecting depht==1.2.1
2023-10-09T16:06:10,344   Created temporary directory: /tmp/pip-unpack-x2xbud1i
2023-10-09T16:06:10,575   Downloading depht-1.2.1.tar.gz (91 kB)
2023-10-09T16:06:10,752   Added depht==1.2.1 from https://files.pythonhosted.org/packages/c3/d1/a6fffbeecdeebf614fcd2abec512ba3a03991dc6f5336546db92502ba3fd/depht-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-zujw8m2s'
2023-10-09T16:06:10,756   Created temporary directory: /tmp/pip-build-env-lx5mv5ak
2023-10-09T16:06:10,761   Installing build dependencies: started
2023-10-09T16:06:10,762   Running command pip subprocess to install build dependencies
2023-10-09T16:06:11,943   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-09T16:06:12,444   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-09T16:06:14,017   Collecting setuptools
2023-10-09T16:06:14,089     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-09T16:06:14,319   Collecting wheel
2023-10-09T16:06:14,341     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-09T16:06:16,945   Installing collected packages: wheel, setuptools
2023-10-09T16:06:17,177     Creating /tmp/pip-build-env-lx5mv5ak/overlay/local/bin
2023-10-09T16:06:17,179     changing mode of /tmp/pip-build-env-lx5mv5ak/overlay/local/bin/wheel to 755
2023-10-09T16:06:19,341   Successfully installed setuptools-68.2.2 wheel-0.41.2
2023-10-09T16:06:19,889   Installing build dependencies: finished with status 'done'
2023-10-09T16:06:19,892   Getting requirements to build wheel: started
2023-10-09T16:06:19,894   Running command Getting requirements to build wheel
2023-10-09T16:06:20,504   running egg_info
2023-10-09T16:06:20,508   writing src/depht.egg-info/PKG-INFO
2023-10-09T16:06:20,513   writing dependency_links to src/depht.egg-info/dependency_links.txt
2023-10-09T16:06:20,515   writing entry points to src/depht.egg-info/entry_points.txt
2023-10-09T16:06:20,516   writing requirements to src/depht.egg-info/requires.txt
2023-10-09T16:06:20,518   writing top-level names to src/depht.egg-info/top_level.txt
2023-10-09T16:06:20,542   reading manifest file 'src/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:20,549   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:20,625   Getting requirements to build wheel: finished with status 'done'
2023-10-09T16:06:20,635   Created temporary directory: /tmp/pip-modern-metadata-99eca4c5
2023-10-09T16:06:20,638   Preparing metadata (pyproject.toml): started
2023-10-09T16:06:20,639   Running command Preparing metadata (pyproject.toml)
2023-10-09T16:06:21,154   running dist_info
2023-10-09T16:06:21,173   creating /tmp/pip-modern-metadata-99eca4c5/depht.egg-info
2023-10-09T16:06:21,177   writing /tmp/pip-modern-metadata-99eca4c5/depht.egg-info/PKG-INFO
2023-10-09T16:06:21,181   writing dependency_links to /tmp/pip-modern-metadata-99eca4c5/depht.egg-info/dependency_links.txt
2023-10-09T16:06:21,183   writing entry points to /tmp/pip-modern-metadata-99eca4c5/depht.egg-info/entry_points.txt
2023-10-09T16:06:21,184   writing requirements to /tmp/pip-modern-metadata-99eca4c5/depht.egg-info/requires.txt
2023-10-09T16:06:21,186   writing top-level names to /tmp/pip-modern-metadata-99eca4c5/depht.egg-info/top_level.txt
2023-10-09T16:06:21,187   writing manifest file '/tmp/pip-modern-metadata-99eca4c5/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:21,207   reading manifest file '/tmp/pip-modern-metadata-99eca4c5/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:21,212   writing manifest file '/tmp/pip-modern-metadata-99eca4c5/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:21,213   creating '/tmp/pip-modern-metadata-99eca4c5/depht-1.2.1.dist-info'
2023-10-09T16:06:21,399   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-09T16:06:21,405   Source in /tmp/pip-wheel-6rr_r_3f/depht_e6fb4b4cf3cf4ccdb1192f690e6a0aba has version 1.2.1, which satisfies requirement depht==1.2.1 from https://files.pythonhosted.org/packages/c3/d1/a6fffbeecdeebf614fcd2abec512ba3a03991dc6f5336546db92502ba3fd/depht-1.2.1.tar.gz
2023-10-09T16:06:21,406   Removed depht==1.2.1 from https://files.pythonhosted.org/packages/c3/d1/a6fffbeecdeebf614fcd2abec512ba3a03991dc6f5336546db92502ba3fd/depht-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-zujw8m2s'
2023-10-09T16:06:21,413 Created temporary directory: /tmp/pip-unpack-sy2fugd0
2023-10-09T16:06:21,414 Created temporary directory: /tmp/pip-unpack-aodgwr9k
2023-10-09T16:06:21,432 Building wheels for collected packages: depht
2023-10-09T16:06:21,436   Created temporary directory: /tmp/pip-wheel-rz9qpotk
2023-10-09T16:06:21,437   Destination directory: /tmp/pip-wheel-rz9qpotk
2023-10-09T16:06:21,439   Building wheel for depht (pyproject.toml): started
2023-10-09T16:06:21,440   Running command Building wheel for depht (pyproject.toml)
2023-10-09T16:06:22,001   running bdist_wheel
2023-10-09T16:06:22,041   running build
2023-10-09T16:06:22,042   running build_py
2023-10-09T16:06:22,049   creating build
2023-10-09T16:06:22,049   creating build/lib
2023-10-09T16:06:22,050   creating build/lib/depht_train
2023-10-09T16:06:22,052   copying src/depht_train/__main__.py -> build/lib/depht_train
2023-10-09T16:06:22,054   copying src/depht_train/__init__.py -> build/lib/depht_train
2023-10-09T16:06:22,055   copying src/depht_train/run.py -> build/lib/depht_train
2023-10-09T16:06:22,057   copying src/depht_train/data.py -> build/lib/depht_train
2023-10-09T16:06:22,059   creating build/lib/depht
2023-10-09T16:06:22,060   copying src/depht/__main__.py -> build/lib/depht
2023-10-09T16:06:22,063   copying src/depht/__init__.py -> build/lib/depht
2023-10-09T16:06:22,064   copying src/depht/fetch_model.py -> build/lib/depht
2023-10-09T16:06:22,066   copying src/depht/data.py -> build/lib/depht
2023-10-09T16:06:22,068   creating build/lib/depht_train/functions
2023-10-09T16:06:22,069   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,071   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,073   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,074   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,076   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,077   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,079   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,081   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2023-10-09T16:06:22,084   creating build/lib/depht_train/classes
2023-10-09T16:06:22,085   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2023-10-09T16:06:22,086   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2023-10-09T16:06:22,088   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2023-10-09T16:06:22,090   creating build/lib/depht_train/pipelines
2023-10-09T16:06:22,091   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,094   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,096   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,097   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,099   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,101   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,103   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,105   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,107   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,109   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,111   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,113   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,115   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2023-10-09T16:06:22,118   creating build/lib/depht/functions
2023-10-09T16:06:22,119   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2023-10-09T16:06:22,121   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2023-10-09T16:06:22,123   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2023-10-09T16:06:22,125   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2023-10-09T16:06:22,127   copying src/depht/functions/att.py -> build/lib/depht/functions
2023-10-09T16:06:22,129   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2023-10-09T16:06:22,131   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2023-10-09T16:06:22,132   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2023-10-09T16:06:22,135   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2023-10-09T16:06:22,136   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2023-10-09T16:06:22,138   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2023-10-09T16:06:22,140   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2023-10-09T16:06:22,142   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2023-10-09T16:06:22,144   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2023-10-09T16:06:22,146   creating build/lib/depht/classes
2023-10-09T16:06:22,147   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2023-10-09T16:06:22,149   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2023-10-09T16:06:22,151   copying src/depht/classes/progress.py -> build/lib/depht/classes
2023-10-09T16:06:22,153   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2023-10-09T16:06:22,154   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2023-10-09T16:06:22,156   copying src/depht/classes/contig.py -> build/lib/depht/classes
2023-10-09T16:06:22,158   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2023-10-09T16:06:22,173   installing to build/bdist.linux-armv7l/wheel
2023-10-09T16:06:22,174   running install
2023-10-09T16:06:22,198   running install_lib
2023-10-09T16:06:22,204   creating build/bdist.linux-armv7l
2023-10-09T16:06:22,205   creating build/bdist.linux-armv7l/wheel
2023-10-09T16:06:22,206   creating build/bdist.linux-armv7l/wheel/depht_train
2023-10-09T16:06:22,207   copying build/lib/depht_train/__main__.py -> build/bdist.linux-armv7l/wheel/depht_train
2023-10-09T16:06:22,209   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,210   copying build/lib/depht_train/functions/entrez.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,212   copying build/lib/depht_train/functions/fileio.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,214   copying build/lib/depht_train/functions/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,216   copying build/lib/depht_train/functions/clustalo.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,218   copying build/lib/depht_train/functions/config_handling.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,220   copying build/lib/depht_train/functions/blastdb.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,222   copying build/lib/depht_train/functions/hhsuitedb.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,225   copying build/lib/depht_train/functions/train_classifier.py -> build/bdist.linux-armv7l/wheel/depht_train/functions
2023-10-09T16:06:22,228   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2023-10-09T16:06:22,229   copying build/lib/depht_train/classes/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2023-10-09T16:06:22,230   copying build/lib/depht_train/classes/database.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2023-10-09T16:06:22,232   copying build/lib/depht_train/classes/kfold.py -> build/bdist.linux-armv7l/wheel/depht_train/classes
2023-10-09T16:06:22,234   copying build/lib/depht_train/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train
2023-10-09T16:06:22,236   copying build/lib/depht_train/run.py -> build/bdist.linux-armv7l/wheel/depht_train
2023-10-09T16:06:22,238   copying build/lib/depht_train/data.py -> build/bdist.linux-armv7l/wheel/depht_train
2023-10-09T16:06:22,240   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,241   copying build/lib/depht_train/pipelines/benchmark_output.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,244   copying build/lib/depht_train/pipelines/phamerate.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,247   copying build/lib/depht_train/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,248   copying build/lib/depht_train/pipelines/recut_fasta.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,250   copying build/lib/depht_train/pipelines/pull_sequences.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,252   copying build/lib/depht_train/pipelines/create_model.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,254   copying build/lib/depht_train/pipelines/build_HMM_db.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,256   copying build/lib/depht_train/pipelines/plot_gene_density.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,258   copying build/lib/depht_train/pipelines/build_reference_db.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,260   copying build/lib/depht_train/pipelines/index_sequences.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,262   copying build/lib/depht_train/pipelines/curate_gene_clusters.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,265   copying build/lib/depht_train/pipelines/train_model.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,267   copying build/lib/depht_train/pipelines/screen_conserved_phams.py -> build/bdist.linux-armv7l/wheel/depht_train/pipelines
2023-10-09T16:06:22,270   creating build/bdist.linux-armv7l/wheel/depht
2023-10-09T16:06:22,271   copying build/lib/depht/__main__.py -> build/bdist.linux-armv7l/wheel/depht
2023-10-09T16:06:22,274   creating build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,275   copying build/lib/depht/functions/sliding_window.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,277   copying build/lib/depht/functions/mmseqs.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,280   copying build/lib/depht/functions/annotation.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,282   copying build/lib/depht/functions/__init__.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,284   copying build/lib/depht/functions/att.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,287   copying build/lib/depht/functions/subprocess.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,289   copying build/lib/depht/functions/blastn.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,291   copying build/lib/depht/functions/find_homologs.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,293   copying build/lib/depht/functions/fasta.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,296   copying build/lib/depht/functions/sniff_format.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,298   copying build/lib/depht/functions/prophage_prediction.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,300   copying build/lib/depht/functions/statistics.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,303   copying build/lib/depht/functions/visualization.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,306   copying build/lib/depht/functions/multiprocess.py -> build/bdist.linux-armv7l/wheel/depht/functions
2023-10-09T16:06:22,309   creating build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,310   copying build/lib/depht/classes/file_translator.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,313   copying build/lib/depht/classes/hhresult.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,316   copying build/lib/depht/classes/progress.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,318   copying build/lib/depht/classes/__init__.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,320   copying build/lib/depht/classes/prophage_classifier.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,323   copying build/lib/depht/classes/contig.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,325   copying build/lib/depht/classes/prophage.py -> build/bdist.linux-armv7l/wheel/depht/classes
2023-10-09T16:06:22,327   copying build/lib/depht/__init__.py -> build/bdist.linux-armv7l/wheel/depht
2023-10-09T16:06:22,329   copying build/lib/depht/fetch_model.py -> build/bdist.linux-armv7l/wheel/depht
2023-10-09T16:06:22,332   copying build/lib/depht/data.py -> build/bdist.linux-armv7l/wheel/depht
2023-10-09T16:06:22,333   running install_egg_info
2023-10-09T16:06:22,344   running egg_info
2023-10-09T16:06:22,348   writing src/depht.egg-info/PKG-INFO
2023-10-09T16:06:22,352   writing dependency_links to src/depht.egg-info/dependency_links.txt
2023-10-09T16:06:22,354   writing entry points to src/depht.egg-info/entry_points.txt
2023-10-09T16:06:22,355   writing requirements to src/depht.egg-info/requires.txt
2023-10-09T16:06:22,357   writing top-level names to src/depht.egg-info/top_level.txt
2023-10-09T16:06:22,367   reading manifest file 'src/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:22,374   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2023-10-09T16:06:22,376   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.2.1-py3.11.egg-info
2023-10-09T16:06:22,388   running install_scripts
2023-10-09T16:06:22,407   creating build/bdist.linux-armv7l/wheel/depht-1.2.1.dist-info/WHEEL
2023-10-09T16:06:22,410   creating '/tmp/pip-wheel-rz9qpotk/.tmp-idwkbsun/depht-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-09T16:06:22,413   adding 'depht/__init__.py'
2023-10-09T16:06:22,416   adding 'depht/__main__.py'
2023-10-09T16:06:22,418   adding 'depht/data.py'
2023-10-09T16:06:22,420   adding 'depht/fetch_model.py'
2023-10-09T16:06:22,422   adding 'depht/classes/__init__.py'
2023-10-09T16:06:22,423   adding 'depht/classes/contig.py'
2023-10-09T16:06:22,425   adding 'depht/classes/file_translator.py'
2023-10-09T16:06:22,428   adding 'depht/classes/hhresult.py'
2023-10-09T16:06:22,430   adding 'depht/classes/progress.py'
2023-10-09T16:06:22,432   adding 'depht/classes/prophage.py'
2023-10-09T16:06:22,434   adding 'depht/classes/prophage_classifier.py'
2023-10-09T16:06:22,436   adding 'depht/functions/__init__.py'
2023-10-09T16:06:22,438   adding 'depht/functions/annotation.py'
2023-10-09T16:06:22,440   adding 'depht/functions/att.py'
2023-10-09T16:06:22,442   adding 'depht/functions/blastn.py'
2023-10-09T16:06:22,444   adding 'depht/functions/fasta.py'
2023-10-09T16:06:22,446   adding 'depht/functions/find_homologs.py'
2023-10-09T16:06:22,449   adding 'depht/functions/mmseqs.py'
2023-10-09T16:06:22,450   adding 'depht/functions/multiprocess.py'
2023-10-09T16:06:22,453   adding 'depht/functions/prophage_prediction.py'
2023-10-09T16:06:22,454   adding 'depht/functions/sliding_window.py'
2023-10-09T16:06:22,456   adding 'depht/functions/sniff_format.py'
2023-10-09T16:06:22,457   adding 'depht/functions/statistics.py'
2023-10-09T16:06:22,459   adding 'depht/functions/subprocess.py'
2023-10-09T16:06:22,461   adding 'depht/functions/visualization.py'
2023-10-09T16:06:22,464   adding 'depht_train/__init__.py'
2023-10-09T16:06:22,465   adding 'depht_train/__main__.py'
2023-10-09T16:06:22,467   adding 'depht_train/data.py'
2023-10-09T16:06:22,468   adding 'depht_train/run.py'
2023-10-09T16:06:22,470   adding 'depht_train/classes/__init__.py'
2023-10-09T16:06:22,472   adding 'depht_train/classes/database.py'
2023-10-09T16:06:22,474   adding 'depht_train/classes/kfold.py'
2023-10-09T16:06:22,476   adding 'depht_train/functions/__init__.py'
2023-10-09T16:06:22,477   adding 'depht_train/functions/blastdb.py'
2023-10-09T16:06:22,479   adding 'depht_train/functions/clustalo.py'
2023-10-09T16:06:22,480   adding 'depht_train/functions/config_handling.py'
2023-10-09T16:06:22,482   adding 'depht_train/functions/entrez.py'
2023-10-09T16:06:22,484   adding 'depht_train/functions/fileio.py'
2023-10-09T16:06:22,486   adding 'depht_train/functions/hhsuitedb.py'
2023-10-09T16:06:22,488   adding 'depht_train/functions/train_classifier.py'
2023-10-09T16:06:22,490   adding 'depht_train/pipelines/__init__.py'
2023-10-09T16:06:22,493   adding 'depht_train/pipelines/benchmark_output.py'
2023-10-09T16:06:22,494   adding 'depht_train/pipelines/build_HMM_db.py'
2023-10-09T16:06:22,496   adding 'depht_train/pipelines/build_reference_db.py'
2023-10-09T16:06:22,499   adding 'depht_train/pipelines/create_model.py'
2023-10-09T16:06:22,501   adding 'depht_train/pipelines/curate_gene_clusters.py'
2023-10-09T16:06:22,503   adding 'depht_train/pipelines/index_sequences.py'
2023-10-09T16:06:22,505   adding 'depht_train/pipelines/phamerate.py'
2023-10-09T16:06:22,507   adding 'depht_train/pipelines/plot_gene_density.py'
2023-10-09T16:06:22,508   adding 'depht_train/pipelines/pull_sequences.py'
2023-10-09T16:06:22,510   adding 'depht_train/pipelines/recut_fasta.py'
2023-10-09T16:06:22,511   adding 'depht_train/pipelines/screen_conserved_phams.py'
2023-10-09T16:06:22,513   adding 'depht_train/pipelines/train_model.py'
2023-10-09T16:06:22,516   adding 'depht-1.2.1.dist-info/METADATA'
2023-10-09T16:06:22,517   adding 'depht-1.2.1.dist-info/WHEEL'
2023-10-09T16:06:22,518   adding 'depht-1.2.1.dist-info/entry_points.txt'
2023-10-09T16:06:22,519   adding 'depht-1.2.1.dist-info/top_level.txt'
2023-10-09T16:06:22,521   adding 'depht-1.2.1.dist-info/RECORD'
2023-10-09T16:06:22,523   removing build/bdist.linux-armv7l/wheel
2023-10-09T16:06:22,643   Building wheel for depht (pyproject.toml): finished with status 'done'
2023-10-09T16:06:22,651   Created wheel for depht: filename=depht-1.2.1-py3-none-any.whl size=101671 sha256=bb766dc2bf8635aac27006698a8373a30c92775cbb88e81c9a3d890d72a584f9
2023-10-09T16:06:22,653   Stored in directory: /tmp/pip-ephem-wheel-cache-msq9g76d/wheels/d9/b6/0d/f05ae85637f7a54eaf110b093504921b1246f1c7a05938e63a
2023-10-09T16:06:22,671 Successfully built depht
2023-10-09T16:06:22,676 Removed build tracker: '/tmp/pip-build-tracker-zujw8m2s'