2023-10-10T11:10:25,805 Created temporary directory: /tmp/pip-build-tracker-vulcsm2x 2023-10-10T11:10:25,806 Initialized build tracking at /tmp/pip-build-tracker-vulcsm2x 2023-10-10T11:10:25,806 Created build tracker: /tmp/pip-build-tracker-vulcsm2x 2023-10-10T11:10:25,807 Entered build tracker: /tmp/pip-build-tracker-vulcsm2x 2023-10-10T11:10:25,808 Created temporary directory: /tmp/pip-wheel-zgejksg7 2023-10-10T11:10:25,811 Created temporary directory: /tmp/pip-ephem-wheel-cache-63tca2je 2023-10-10T11:10:25,832 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-10T11:10:25,836 2 location(s) to search for versions of moleculekit: 2023-10-10T11:10:25,836 * https://pypi.org/simple/moleculekit/ 2023-10-10T11:10:25,836 * https://www.piwheels.org/simple/moleculekit/ 2023-10-10T11:10:25,837 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/ 2023-10-10T11:10:25,838 Getting page https://pypi.org/simple/moleculekit/ 2023-10-10T11:10:25,839 Found index url https://pypi.org/simple/ 2023-10-10T11:10:26,066 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json 2023-10-10T11:10:26,104 Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/) 2023-10-10T11:10:26,104 Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4 2023-10-10T11:10:26,105 Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/) 2023-10-10T11:10:26,106 Found link 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https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/) 2023-10-10T11:10:26,648 Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/) 2023-10-10T11:10:26,649 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/ 2023-10-10T11:10:26,649 Skipping link: not a file: https://pypi.org/simple/moleculekit/ 2023-10-10T11:10:26,690 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates 2023-10-10T11:10:26,709 Collecting moleculekit==1.8.1 2023-10-10T11:10:26,711 Created temporary directory: /tmp/pip-unpack-r0be424x 2023-10-10T11:10:26,933 Downloading moleculekit-1.8.1.tar.gz (6.2 MB) 2023-10-10T11:10:29,608 Added moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-vulcsm2x' 2023-10-10T11:10:29,616 Created temporary directory: /tmp/pip-build-env-dhvtudmt 2023-10-10T11:10:29,621 Installing build dependencies: started 2023-10-10T11:10:29,622 Running command pip subprocess to install build dependencies 2023-10-10T11:10:30,782 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-10T11:10:31,290 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-10T11:10:32,844 Collecting setuptools 2023-10-10T11:10:32,912 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-10T11:10:33,677 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-10-10T11:10:33,685 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-10-10T11:10:33,692 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-10-10T11:10:33,699 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-10-10T11:10:33,707 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2023-10-10T11:10:34,097 Collecting numpy>=1.18.5 2023-10-10T11:10:35,463 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp311-cp311-linux_armv7l.whl (19.5 MB) 2023-10-10T11:10:37,618 Collecting Cython>=0.29.21 2023-10-10T11:10:38,468 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp311-cp311-linux_armv7l.whl (11.7 MB) 2023-10-10T11:10:38,871 Collecting toml 2023-10-10T11:10:38,897 Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB) 2023-10-10T11:10:39,069 Collecting versioneer[toml]==0.28 2023-10-10T11:10:39,089 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB) 2023-10-10T11:10:42,892 Installing collected packages: versioneer, toml, setuptools, numpy, Cython 2023-10-10T11:10:42,933 Creating /tmp/pip-build-env-dhvtudmt/overlay/local/bin 2023-10-10T11:10:42,935 changing mode of /tmp/pip-build-env-dhvtudmt/overlay/local/bin/versioneer to 755 2023-10-10T11:10:55,106 changing mode of /tmp/pip-build-env-dhvtudmt/overlay/local/bin/f2py to 755 2023-10-10T11:10:58,745 changing mode of /tmp/pip-build-env-dhvtudmt/overlay/local/bin/cygdb to 755 2023-10-10T11:10:58,747 changing mode of /tmp/pip-build-env-dhvtudmt/overlay/local/bin/cython to 755 2023-10-10T11:10:58,749 changing mode of /tmp/pip-build-env-dhvtudmt/overlay/local/bin/cythonize to 755 2023-10-10T11:10:58,795 Successfully installed Cython-3.0.3 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 versioneer-0.28 2023-10-10T11:10:59,476 Installing build dependencies: finished with status 'done' 2023-10-10T11:10:59,479 Getting requirements to build wheel: started 2023-10-10T11:10:59,480 Running command Getting requirements to build wheel 2023-10-10T11:11:35,324 Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,324 Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,325 Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,325 Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,326 Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,326 Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,327 Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,328 Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,328 Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,329 Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2023-10-10T11:11:35,330 Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-10T11:11:35,330 [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx 2023-10-10T11:11:35,331 [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx 2023-10-10T11:11:35,331 [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx 2023-10-10T11:11:35,332 [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx 2023-10-10T11:11:35,332 [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx 2023-10-10T11:11:35,333 [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx 2023-10-10T11:11:35,333 [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx 2023-10-10T11:11:35,334 [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx 2023-10-10T11:11:35,335 [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx 2023-10-10T11:11:35,335 [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx 2023-10-10T11:11:35,336 [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx 2023-10-10T11:11:35,605 running egg_info 2023-10-10T11:11:35,611 writing moleculekit.egg-info/PKG-INFO 2023-10-10T11:11:35,615 writing dependency_links to moleculekit.egg-info/dependency_links.txt 2023-10-10T11:11:35,618 writing requirements to moleculekit.egg-info/requires.txt 2023-10-10T11:11:35,619 writing top-level names to moleculekit.egg-info/top_level.txt 2023-10-10T11:11:35,642 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,642 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,643 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,644 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,644 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,645 dependency 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be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,648 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,648 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,649 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,650 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,650 dependency 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be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,654 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,654 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,655 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,655 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,656 dependency 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/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,675 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,676 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,676 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,677 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:35,677 reading manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:35,708 reading manifest template 'MANIFEST.in' 2023-10-10T11:11:35,922 no previously-included directories found matching 'moleculekit/test-data' 2023-10-10T11:11:35,923 no previously-included directories found matching 'moleculekit/tests' 2023-10-10T11:11:35,924 no previously-included directories found matching 'package' 2023-10-10T11:11:35,925 adding license file 'LICENSE' 2023-10-10T11:11:35,939 writing manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:37,248 Getting requirements to build wheel: finished with status 'done' 2023-10-10T11:11:37,262 Installing backend dependencies: started 2023-10-10T11:11:37,263 Running command pip subprocess to install backend dependencies 2023-10-10T11:11:38,497 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-10T11:11:39,028 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-10T11:11:39,536 Collecting wheel 2023-10-10T11:11:39,555 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-10T11:11:41,767 Installing collected packages: wheel 2023-10-10T11:11:41,987 Creating /tmp/pip-build-env-dhvtudmt/normal/local/bin 2023-10-10T11:11:41,989 changing mode of /tmp/pip-build-env-dhvtudmt/normal/local/bin/wheel to 755 2023-10-10T11:11:42,001 Successfully installed wheel-0.41.2 2023-10-10T11:11:42,489 Installing backend dependencies: finished with status 'done' 2023-10-10T11:11:42,491 Created temporary directory: /tmp/pip-modern-metadata-ybgzx2jo 2023-10-10T11:11:42,493 Preparing metadata (pyproject.toml): started 2023-10-10T11:11:42,494 Running command Preparing metadata (pyproject.toml) 2023-10-10T11:11:44,779 running dist_info 2023-10-10T11:11:44,780 creating /tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info 2023-10-10T11:11:44,786 writing /tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/PKG-INFO 2023-10-10T11:11:44,790 writing dependency_links to /tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/dependency_links.txt 2023-10-10T11:11:44,792 writing requirements to /tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/requires.txt 2023-10-10T11:11:44,793 writing top-level names to /tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/top_level.txt 2023-10-10T11:11:44,794 writing manifest file '/tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:44,815 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,816 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,817 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,817 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,818 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,818 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,819 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,819 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,820 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,820 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,821 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,821 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,821 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,822 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,822 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,823 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,823 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,824 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,824 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,825 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,826 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,826 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,827 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,827 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,828 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,828 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,829 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,830 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,830 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,830 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,831 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,831 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,832 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,832 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,833 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,833 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,834 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,834 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,835 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,835 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,836 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,836 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,837 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,837 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,838 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,838 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,839 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,839 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,840 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,840 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,840 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,841 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,841 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,842 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,842 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:44,843 reading manifest file '/tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:44,843 reading manifest template 'MANIFEST.in' 2023-10-10T11:11:45,064 no previously-included directories found matching 'moleculekit/test-data' 2023-10-10T11:11:45,065 no previously-included directories found matching 'moleculekit/tests' 2023-10-10T11:11:45,066 no previously-included directories found matching 'package' 2023-10-10T11:11:45,066 adding license file 'LICENSE' 2023-10-10T11:11:45,076 writing manifest file '/tmp/pip-modern-metadata-ybgzx2jo/moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:45,084 creating '/tmp/pip-modern-metadata-ybgzx2jo/moleculekit-1.8.1.dist-info' 2023-10-10T11:11:45,322 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-10T11:11:45,326 Source in /tmp/pip-wheel-zgejksg7/moleculekit_0e901089f9eb4b689b79b4554cea4e25 has version 1.8.1, which satisfies requirement moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz 2023-10-10T11:11:45,327 Removed moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-vulcsm2x' 2023-10-10T11:11:45,333 Created temporary directory: /tmp/pip-unpack-itx76wrj 2023-10-10T11:11:45,334 Created temporary directory: /tmp/pip-unpack-jtfhbwqd 2023-10-10T11:11:45,342 Building wheels for collected packages: moleculekit 2023-10-10T11:11:45,346 Created temporary directory: /tmp/pip-wheel-9pby1uqx 2023-10-10T11:11:45,347 Destination directory: /tmp/pip-wheel-9pby1uqx 2023-10-10T11:11:45,349 Building wheel for moleculekit (pyproject.toml): started 2023-10-10T11:11:45,350 Running command Building wheel for moleculekit (pyproject.toml) 2023-10-10T11:11:47,487 running bdist_wheel 2023-10-10T11:11:47,502 running build 2023-10-10T11:11:47,503 running build_py 2023-10-10T11:11:47,509 creating build 2023-10-10T11:11:47,510 creating build/lib.linux-armv7l-cpython-311 2023-10-10T11:11:47,510 creating build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,512 copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,514 copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,518 copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,520 copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,522 copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,524 copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,526 copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,527 copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,530 copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,532 copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,536 copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,539 copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,541 copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,542 copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,544 copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,546 copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,549 copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,551 copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,552 copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,555 copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,558 copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:47,561 creating build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-10-10T11:11:47,562 copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-10-10T11:11:47,564 copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-10-10T11:11:47,567 copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply 2023-10-10T11:11:47,573 creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-10-10T11:11:47,574 copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-10-10T11:11:47,575 copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-10-10T11:11:47,578 copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-10-10T11:11:47,580 copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect 2023-10-10T11:11:47,583 creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,584 copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,586 copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,588 copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,590 copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,593 copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,595 copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol 2023-10-10T11:11:47,599 creating build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,599 copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,602 copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,604 copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,606 copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,608 copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,610 copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,613 copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,615 copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,617 copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,620 copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,622 copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,625 copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,627 copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools 2023-10-10T11:11:47,630 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-10-10T11:11:47,631 copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-10-10T11:11:47,633 copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions 2023-10-10T11:11:47,636 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx 2023-10-10T11:11:47,637 copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx 2023-10-10T11:11:47,640 creating build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,641 copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,643 copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,645 copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,648 copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,650 copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,652 copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,654 copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,656 copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,658 copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,660 copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,663 copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,665 copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,667 copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,670 copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,672 copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections 2023-10-10T11:11:47,675 creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-10-10T11:11:47,676 copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-10-10T11:11:47,678 copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-10-10T11:11:47,680 copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-10-10T11:11:47,682 copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools 2023-10-10T11:11:47,684 creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-10-10T11:11:47,685 copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-10-10T11:11:47,688 copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools 2023-10-10T11:11:47,690 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-10-10T11:11:47,691 copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-10-10T11:11:47,693 copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-10-10T11:11:47,695 copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-10-10T11:11:47,698 copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader 2023-10-10T11:11:47,701 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-10-10T11:11:47,702 copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-10-10T11:11:47,704 copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-10-10T11:11:47,706 copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-10-10T11:11:47,709 copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests 2023-10-10T11:11:47,712 creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-10-10T11:11:47,713 copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-10-10T11:11:47,715 copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer 2023-10-10T11:11:47,717 running egg_info 2023-10-10T11:11:47,721 writing moleculekit.egg-info/PKG-INFO 2023-10-10T11:11:47,724 writing dependency_links to moleculekit.egg-info/dependency_links.txt 2023-10-10T11:11:47,726 writing requirements to moleculekit.egg-info/requires.txt 2023-10-10T11:11:47,727 writing top-level names to moleculekit.egg-info/top_level.txt 2023-10-10T11:11:47,738 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,739 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,739 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,739 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,740 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,740 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,741 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,741 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,742 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,743 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,743 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,744 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,744 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,745 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,745 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,746 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,747 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,747 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,748 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,748 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,749 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,749 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,750 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,750 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,751 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,751 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,752 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,752 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,753 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,754 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,755 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,756 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,757 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,762 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,763 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,763 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,764 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,765 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,765 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,766 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,766 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,767 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,767 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,768 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,768 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,769 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,769 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,770 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,770 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,771 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,771 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,772 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,772 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,773 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,774 dependency /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-10T11:11:47,774 reading manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:47,775 reading manifest template 'MANIFEST.in' 2023-10-10T11:11:47,972 no previously-included directories found matching 'moleculekit/test-data' 2023-10-10T11:11:47,973 no previously-included directories found matching 'moleculekit/tests' 2023-10-10T11:11:47,974 no previously-included directories found matching 'package' 2023-10-10T11:11:47,974 adding license file 'LICENSE' 2023-10-10T11:11:47,988 writing manifest file 'moleculekit.egg-info/SOURCES.txt' 2023-10-10T11:11:47,996 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration. 2023-10-10T11:11:47,997 !! 2023-10-10T11:11:47,998 ******************************************************************************** 2023-10-10T11:11:47,998 ############################ 2023-10-10T11:11:47,999 # Package would be ignored # 2023-10-10T11:11:47,999 ############################ 2023-10-10T11:11:47,999 Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1], 2023-10-10T11:11:48,000 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,001 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,001 package, please make sure that 'moleculekit.atomselect_utils' is explicitly added 2023-10-10T11:11:48,002 to the `packages` configuration field. 2023-10-10T11:11:48,003 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,004 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,004 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,005 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,007 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,008 If you don't want 'moleculekit.atomselect_utils' to be distributed and are 2023-10-10T11:11:48,008 already explicitly excluding 'moleculekit.atomselect_utils' via 2023-10-10T11:11:48,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,010 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,011 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,013 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,014 even if it does not contain any `.py` files. 2023-10-10T11:11:48,015 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,015 directory, all directories are treated like packages. 2023-10-10T11:11:48,016 ******************************************************************************** 2023-10-10T11:11:48,017 !! 2023-10-10T11:11:48,017 check.warn(importable) 2023-10-10T11:11:48,018 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration. 2023-10-10T11:11:48,019 !! 2023-10-10T11:11:48,020 ******************************************************************************** 2023-10-10T11:11:48,021 ############################ 2023-10-10T11:11:48,021 # Package would be ignored # 2023-10-10T11:11:48,022 ############################ 2023-10-10T11:11:48,022 Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1], 2023-10-10T11:11:48,023 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,023 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,024 package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added 2023-10-10T11:11:48,024 to the `packages` configuration field. 2023-10-10T11:11:48,025 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,025 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,026 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,026 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,027 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,028 If you don't want 'moleculekit.bondguesser_utils' to be distributed and are 2023-10-10T11:11:48,029 already explicitly excluding 'moleculekit.bondguesser_utils' via 2023-10-10T11:11:48,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,030 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,031 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,034 even if it does not contain any `.py` files. 2023-10-10T11:11:48,035 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,035 directory, all directories are treated like packages. 2023-10-10T11:11:48,036 ******************************************************************************** 2023-10-10T11:11:48,037 !! 2023-10-10T11:11:48,037 check.warn(importable) 2023-10-10T11:11:48,038 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration. 2023-10-10T11:11:48,039 !! 2023-10-10T11:11:48,040 ******************************************************************************** 2023-10-10T11:11:48,040 ############################ 2023-10-10T11:11:48,041 # Package would be ignored # 2023-10-10T11:11:48,042 ############################ 2023-10-10T11:11:48,042 Python recognizes 'moleculekit.distance_utils' as an importable package[^1], 2023-10-10T11:11:48,043 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,054 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,059 package, please make sure that 'moleculekit.distance_utils' is explicitly added 2023-10-10T11:11:48,060 to the `packages` configuration field. 2023-10-10T11:11:48,061 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,062 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,063 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,065 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,066 If you don't want 'moleculekit.distance_utils' to be distributed and are 2023-10-10T11:11:48,067 already explicitly excluding 'moleculekit.distance_utils' via 2023-10-10T11:11:48,067 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,068 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,069 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,072 even if it does not contain any `.py` files. 2023-10-10T11:11:48,072 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,073 directory, all directories are treated like packages. 2023-10-10T11:11:48,076 ******************************************************************************** 2023-10-10T11:11:48,087 !! 2023-10-10T11:11:48,087 check.warn(importable) 2023-10-10T11:11:48,088 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration. 2023-10-10T11:11:48,088 !! 2023-10-10T11:11:48,090 ******************************************************************************** 2023-10-10T11:11:48,090 ############################ 2023-10-10T11:11:48,091 # Package would be ignored # 2023-10-10T11:11:48,091 ############################ 2023-10-10T11:11:48,092 Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1], 2023-10-10T11:11:48,093 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,094 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,095 package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added 2023-10-10T11:11:48,096 to the `packages` configuration field. 2023-10-10T11:11:48,097 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,098 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,099 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,103 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,113 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,114 If you don't want 'moleculekit.interactions.cationpi' to be distributed and are 2023-10-10T11:11:48,114 already explicitly excluding 'moleculekit.interactions.cationpi' via 2023-10-10T11:11:48,115 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,116 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,117 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,118 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,120 even if it does not contain any `.py` files. 2023-10-10T11:11:48,121 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,122 directory, all directories are treated like packages. 2023-10-10T11:11:48,122 ******************************************************************************** 2023-10-10T11:11:48,124 !! 2023-10-10T11:11:48,124 check.warn(importable) 2023-10-10T11:11:48,125 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration. 2023-10-10T11:11:48,125 !! 2023-10-10T11:11:48,126 ******************************************************************************** 2023-10-10T11:11:48,126 ############################ 2023-10-10T11:11:48,127 # Package would be ignored # 2023-10-10T11:11:48,127 ############################ 2023-10-10T11:11:48,128 Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1], 2023-10-10T11:11:48,128 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,129 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,130 package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added 2023-10-10T11:11:48,130 to the `packages` configuration field. 2023-10-10T11:11:48,132 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,133 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,134 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,136 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,137 If you don't want 'moleculekit.interactions.hbonds' to be distributed and are 2023-10-10T11:11:48,138 already explicitly excluding 'moleculekit.interactions.hbonds' via 2023-10-10T11:11:48,138 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,139 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,139 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,140 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,142 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,147 even if it does not contain any `.py` files. 2023-10-10T11:11:48,147 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,148 directory, all directories are treated like packages. 2023-10-10T11:11:48,149 ******************************************************************************** 2023-10-10T11:11:48,150 !! 2023-10-10T11:11:48,150 check.warn(importable) 2023-10-10T11:11:48,151 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration. 2023-10-10T11:11:48,151 !! 2023-10-10T11:11:48,152 ******************************************************************************** 2023-10-10T11:11:48,153 ############################ 2023-10-10T11:11:48,153 # Package would be ignored # 2023-10-10T11:11:48,154 ############################ 2023-10-10T11:11:48,154 Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1], 2023-10-10T11:11:48,155 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,156 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,156 package, please make sure that 'moleculekit.interactions.pipi' is explicitly added 2023-10-10T11:11:48,157 to the `packages` configuration field. 2023-10-10T11:11:48,158 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,158 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,158 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,159 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,160 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,161 If you don't want 'moleculekit.interactions.pipi' to be distributed and are 2023-10-10T11:11:48,162 already explicitly excluding 'moleculekit.interactions.pipi' via 2023-10-10T11:11:48,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,163 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,163 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,164 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,167 even if it does not contain any `.py` files. 2023-10-10T11:11:48,167 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,168 directory, all directories are treated like packages. 2023-10-10T11:11:48,168 ******************************************************************************** 2023-10-10T11:11:48,170 !! 2023-10-10T11:11:48,170 check.warn(importable) 2023-10-10T11:11:48,171 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration. 2023-10-10T11:11:48,172 !! 2023-10-10T11:11:48,173 ******************************************************************************** 2023-10-10T11:11:48,174 ############################ 2023-10-10T11:11:48,174 # Package would be ignored # 2023-10-10T11:11:48,175 ############################ 2023-10-10T11:11:48,176 Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1], 2023-10-10T11:11:48,176 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,178 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,178 package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added 2023-10-10T11:11:48,179 to the `packages` configuration field. 2023-10-10T11:11:48,180 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,181 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,182 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,184 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,185 If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are 2023-10-10T11:11:48,185 already explicitly excluding 'moleculekit.interactions.sigmahole' via 2023-10-10T11:11:48,186 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,187 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,189 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,191 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,192 even if it does not contain any `.py` files. 2023-10-10T11:11:48,192 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,192 directory, all directories are treated like packages. 2023-10-10T11:11:48,193 ******************************************************************************** 2023-10-10T11:11:48,194 !! 2023-10-10T11:11:48,194 check.warn(importable) 2023-10-10T11:11:48,195 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration. 2023-10-10T11:11:48,195 !! 2023-10-10T11:11:48,196 ******************************************************************************** 2023-10-10T11:11:48,197 ############################ 2023-10-10T11:11:48,197 # Package would be ignored # 2023-10-10T11:11:48,197 ############################ 2023-10-10T11:11:48,198 Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1], 2023-10-10T11:11:48,198 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,199 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,200 package, please make sure that 'moleculekit.occupancy_utils' is explicitly added 2023-10-10T11:11:48,200 to the `packages` configuration field. 2023-10-10T11:11:48,202 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,203 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,204 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,206 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,207 If you don't want 'moleculekit.occupancy_utils' to be distributed and are 2023-10-10T11:11:48,207 already explicitly excluding 'moleculekit.occupancy_utils' via 2023-10-10T11:11:48,208 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,209 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,211 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,212 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,214 even if it does not contain any `.py` files. 2023-10-10T11:11:48,215 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,215 directory, all directories are treated like packages. 2023-10-10T11:11:48,216 ******************************************************************************** 2023-10-10T11:11:48,217 !! 2023-10-10T11:11:48,218 check.warn(importable) 2023-10-10T11:11:48,218 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration. 2023-10-10T11:11:48,219 !! 2023-10-10T11:11:48,220 ******************************************************************************** 2023-10-10T11:11:48,221 ############################ 2023-10-10T11:11:48,222 # Package would be ignored # 2023-10-10T11:11:48,223 ############################ 2023-10-10T11:11:48,225 Python recognizes 'moleculekit.share' as an importable package[^1], 2023-10-10T11:11:48,226 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,285 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,328 package, please make sure that 'moleculekit.share' is explicitly added 2023-10-10T11:11:48,368 to the `packages` configuration field. 2023-10-10T11:11:48,371 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,371 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,372 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,372 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,373 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,374 If you don't want 'moleculekit.share' to be distributed and are 2023-10-10T11:11:48,374 already explicitly excluding 'moleculekit.share' via 2023-10-10T11:11:48,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,375 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,376 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,377 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,380 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,380 even if it does not contain any `.py` files. 2023-10-10T11:11:48,381 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,381 directory, all directories are treated like packages. 2023-10-10T11:11:48,382 ******************************************************************************** 2023-10-10T11:11:48,383 !! 2023-10-10T11:11:48,384 check.warn(importable) 2023-10-10T11:11:48,384 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration. 2023-10-10T11:11:48,385 !! 2023-10-10T11:11:48,386 ******************************************************************************** 2023-10-10T11:11:48,387 ############################ 2023-10-10T11:11:48,387 # Package would be ignored # 2023-10-10T11:11:48,388 ############################ 2023-10-10T11:11:48,389 Python recognizes 'moleculekit.share.atomselect' as an importable package[^1], 2023-10-10T11:11:48,389 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,390 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,391 package, please make sure that 'moleculekit.share.atomselect' is explicitly added 2023-10-10T11:11:48,392 to the `packages` configuration field. 2023-10-10T11:11:48,393 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,394 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,395 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,398 If you don't want 'moleculekit.share.atomselect' to be distributed and are 2023-10-10T11:11:48,398 already explicitly excluding 'moleculekit.share.atomselect' via 2023-10-10T11:11:48,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,399 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,400 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,401 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,402 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,404 even if it does not contain any `.py` files. 2023-10-10T11:11:48,405 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,406 directory, all directories are treated like packages. 2023-10-10T11:11:48,406 ******************************************************************************** 2023-10-10T11:11:48,407 !! 2023-10-10T11:11:48,408 check.warn(importable) 2023-10-10T11:11:48,408 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration. 2023-10-10T11:11:48,409 !! 2023-10-10T11:11:48,410 ******************************************************************************** 2023-10-10T11:11:48,411 ############################ 2023-10-10T11:11:48,412 # Package would be ignored # 2023-10-10T11:11:48,412 ############################ 2023-10-10T11:11:48,413 Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1], 2023-10-10T11:11:48,413 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,415 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,415 package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added 2023-10-10T11:11:48,416 to the `packages` configuration field. 2023-10-10T11:11:48,417 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,418 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,420 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,421 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,422 If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are 2023-10-10T11:11:48,423 already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via 2023-10-10T11:11:48,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,425 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,426 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,428 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,430 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,430 even if it does not contain any `.py` files. 2023-10-10T11:11:48,431 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,432 directory, all directories are treated like packages. 2023-10-10T11:11:48,432 ******************************************************************************** 2023-10-10T11:11:48,434 !! 2023-10-10T11:11:48,434 check.warn(importable) 2023-10-10T11:11:48,435 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration. 2023-10-10T11:11:48,435 !! 2023-10-10T11:11:48,436 ******************************************************************************** 2023-10-10T11:11:48,437 ############################ 2023-10-10T11:11:48,437 # Package would be ignored # 2023-10-10T11:11:48,438 ############################ 2023-10-10T11:11:48,438 Python recognizes 'moleculekit.tmalign' as an importable package[^1], 2023-10-10T11:11:48,439 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,440 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,440 package, please make sure that 'moleculekit.tmalign' is explicitly added 2023-10-10T11:11:48,441 to the `packages` configuration field. 2023-10-10T11:11:48,442 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,443 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,444 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,445 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,447 If you don't want 'moleculekit.tmalign' to be distributed and are 2023-10-10T11:11:48,447 already explicitly excluding 'moleculekit.tmalign' via 2023-10-10T11:11:48,447 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,448 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,449 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,453 even if it does not contain any `.py` files. 2023-10-10T11:11:48,454 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,454 directory, all directories are treated like packages. 2023-10-10T11:11:48,455 ******************************************************************************** 2023-10-10T11:11:48,456 !! 2023-10-10T11:11:48,457 check.warn(importable) 2023-10-10T11:11:48,457 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration. 2023-10-10T11:11:48,458 !! 2023-10-10T11:11:48,459 ******************************************************************************** 2023-10-10T11:11:48,459 ############################ 2023-10-10T11:11:48,460 # Package would be ignored # 2023-10-10T11:11:48,460 ############################ 2023-10-10T11:11:48,461 Python recognizes 'moleculekit.tmalign.include' as an importable package[^1], 2023-10-10T11:11:48,461 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,462 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,463 package, please make sure that 'moleculekit.tmalign.include' is explicitly added 2023-10-10T11:11:48,463 to the `packages` configuration field. 2023-10-10T11:11:48,464 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,465 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,466 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,468 If you don't want 'moleculekit.tmalign.include' to be distributed and are 2023-10-10T11:11:48,469 already explicitly excluding 'moleculekit.tmalign.include' via 2023-10-10T11:11:48,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,470 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,471 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,474 even if it does not contain any `.py` files. 2023-10-10T11:11:48,474 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,475 directory, all directories are treated like packages. 2023-10-10T11:11:48,475 ******************************************************************************** 2023-10-10T11:11:48,476 !! 2023-10-10T11:11:48,477 check.warn(importable) 2023-10-10T11:11:48,477 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration. 2023-10-10T11:11:48,478 !! 2023-10-10T11:11:48,479 ******************************************************************************** 2023-10-10T11:11:48,479 ############################ 2023-10-10T11:11:48,480 # Package would be ignored # 2023-10-10T11:11:48,480 ############################ 2023-10-10T11:11:48,481 Python recognizes 'moleculekit.tmalign.src' as an importable package[^1], 2023-10-10T11:11:48,481 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,482 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,483 package, please make sure that 'moleculekit.tmalign.src' is explicitly added 2023-10-10T11:11:48,483 to the `packages` configuration field. 2023-10-10T11:11:48,485 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,486 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,487 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,488 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,489 If you don't want 'moleculekit.tmalign.src' to be distributed and are 2023-10-10T11:11:48,489 already explicitly excluding 'moleculekit.tmalign.src' via 2023-10-10T11:11:48,490 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,491 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,492 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,493 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,495 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,495 even if it does not contain any `.py` files. 2023-10-10T11:11:48,496 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,496 directory, all directories are treated like packages. 2023-10-10T11:11:48,496 ******************************************************************************** 2023-10-10T11:11:48,497 !! 2023-10-10T11:11:48,498 check.warn(importable) 2023-10-10T11:11:48,498 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration. 2023-10-10T11:11:48,499 !! 2023-10-10T11:11:48,500 ******************************************************************************** 2023-10-10T11:11:48,500 ############################ 2023-10-10T11:11:48,501 # Package would be ignored # 2023-10-10T11:11:48,501 ############################ 2023-10-10T11:11:48,502 Python recognizes 'moleculekit.wrapping' as an importable package[^1], 2023-10-10T11:11:48,502 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,503 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,504 package, please make sure that 'moleculekit.wrapping' is explicitly added 2023-10-10T11:11:48,504 to the `packages` configuration field. 2023-10-10T11:11:48,505 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,506 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,507 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,508 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,509 If you don't want 'moleculekit.wrapping' to be distributed and are 2023-10-10T11:11:48,510 already explicitly excluding 'moleculekit.wrapping' via 2023-10-10T11:11:48,510 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,511 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,511 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,512 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,515 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,515 even if it does not contain any `.py` files. 2023-10-10T11:11:48,516 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,516 directory, all directories are treated like packages. 2023-10-10T11:11:48,517 ******************************************************************************** 2023-10-10T11:11:48,518 !! 2023-10-10T11:11:48,519 check.warn(importable) 2023-10-10T11:11:48,519 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration. 2023-10-10T11:11:48,520 !! 2023-10-10T11:11:48,521 ******************************************************************************** 2023-10-10T11:11:48,521 ############################ 2023-10-10T11:11:48,522 # Package would be ignored # 2023-10-10T11:11:48,522 ############################ 2023-10-10T11:11:48,523 Python recognizes 'moleculekit.xtc_utils' as an importable package[^1], 2023-10-10T11:11:48,523 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,525 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,525 package, please make sure that 'moleculekit.xtc_utils' is explicitly added 2023-10-10T11:11:48,525 to the `packages` configuration field. 2023-10-10T11:11:48,526 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,527 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,528 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,529 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,530 If you don't want 'moleculekit.xtc_utils' to be distributed and are 2023-10-10T11:11:48,530 already explicitly excluding 'moleculekit.xtc_utils' via 2023-10-10T11:11:48,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,532 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,533 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,534 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,535 even if it does not contain any `.py` files. 2023-10-10T11:11:48,536 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,536 directory, all directories are treated like packages. 2023-10-10T11:11:48,537 ******************************************************************************** 2023-10-10T11:11:48,538 !! 2023-10-10T11:11:48,539 check.warn(importable) 2023-10-10T11:11:48,539 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration. 2023-10-10T11:11:48,539 !! 2023-10-10T11:11:48,540 ******************************************************************************** 2023-10-10T11:11:48,541 ############################ 2023-10-10T11:11:48,541 # Package would be ignored # 2023-10-10T11:11:48,542 ############################ 2023-10-10T11:11:48,543 Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1], 2023-10-10T11:11:48,543 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,544 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,545 package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added 2023-10-10T11:11:48,545 to the `packages` configuration field. 2023-10-10T11:11:48,546 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,547 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,549 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,551 If you don't want 'moleculekit.xtc_utils.include' to be distributed and are 2023-10-10T11:11:48,551 already explicitly excluding 'moleculekit.xtc_utils.include' via 2023-10-10T11:11:48,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,553 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,554 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,556 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,557 even if it does not contain any `.py` files. 2023-10-10T11:11:48,557 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,558 directory, all directories are treated like packages. 2023-10-10T11:11:48,558 ******************************************************************************** 2023-10-10T11:11:48,559 !! 2023-10-10T11:11:48,560 check.warn(importable) 2023-10-10T11:11:48,560 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration. 2023-10-10T11:11:48,561 !! 2023-10-10T11:11:48,561 ******************************************************************************** 2023-10-10T11:11:48,562 ############################ 2023-10-10T11:11:48,562 # Package would be ignored # 2023-10-10T11:11:48,563 ############################ 2023-10-10T11:11:48,563 Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1], 2023-10-10T11:11:48,564 but it is absent from setuptools' `packages` configuration. 2023-10-10T11:11:48,565 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-10T11:11:48,565 package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added 2023-10-10T11:11:48,566 to the `packages` configuration field. 2023-10-10T11:11:48,567 Alternatively, you can also rely on setuptools' discovery methods 2023-10-10T11:11:48,568 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-10T11:11:48,568 instead of `find_packages(...)`/`find:`). 2023-10-10T11:11:48,569 You can read more about "package discovery" on setuptools documentation page: 2023-10-10T11:11:48,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-10T11:11:48,571 If you don't want 'moleculekit.xtc_utils.src' to be distributed and are 2023-10-10T11:11:48,572 already explicitly excluding 'moleculekit.xtc_utils.src' via 2023-10-10T11:11:48,572 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-10T11:11:48,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-10T11:11:48,573 combination with a more fine grained `package-data` configuration. 2023-10-10T11:11:48,575 You can read more about "package data files" on setuptools documentation page: 2023-10-10T11:11:48,576 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-10T11:11:48,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-10T11:11:48,578 even if it does not contain any `.py` files. 2023-10-10T11:11:48,578 On the other hand, currently there is no concept of package data 2023-10-10T11:11:48,579 directory, all directories are treated like packages. 2023-10-10T11:11:48,580 ******************************************************************************** 2023-10-10T11:11:48,581 !! 2023-10-10T11:11:48,581 check.warn(importable) 2023-10-10T11:11:48,582 copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:48,582 copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:48,583 creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-10-10T11:11:48,584 copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-10-10T11:11:48,584 copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-10-10T11:11:48,584 creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-10-10T11:11:48,585 copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-10-10T11:11:48,585 copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-10-10T11:11:48,586 creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-10-10T11:11:48,586 copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-10-10T11:11:48,587 copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-10-10T11:11:48,587 creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-10-10T11:11:48,588 copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-10-10T11:11:48,588 copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-10-10T11:11:48,589 creating build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-10-10T11:11:48,589 copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-10-10T11:11:48,590 copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-10-10T11:11:48,590 copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share 2023-10-10T11:11:48,591 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect 2023-10-10T11:11:48,591 copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect 2023-10-10T11:11:48,592 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr 2023-10-10T11:11:48,592 creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,593 copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,593 copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,594 copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,594 copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,595 copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,595 copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,596 copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,596 copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,597 copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,597 copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,598 copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,598 copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,599 copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,600 copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,600 copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,601 copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,601 copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,601 copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,602 copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,602 copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,603 copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,603 copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,604 copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,605 copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,605 copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,606 copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,606 copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,607 copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,608 copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,608 copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,609 copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,609 copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,610 copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,611 copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,611 copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,612 copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,613 copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,614 copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,615 copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,615 copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,616 copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,616 copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,617 copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,617 copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,618 copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,618 copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,619 copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,619 copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,619 copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,620 copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,620 copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,621 copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,621 copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,622 copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,622 copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,623 copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,623 copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,624 copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,624 copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,625 copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,625 copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,626 copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,627 copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,627 copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,628 copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,628 copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,629 copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,629 copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,630 copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,630 copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,631 copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,631 copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,632 copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,632 copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,633 copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,633 copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,634 copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,634 copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,635 copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,635 copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,636 copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,636 copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,637 copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,637 copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,638 copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,638 copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,639 copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,639 copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,640 copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,640 copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,641 copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,641 copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,642 copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,642 copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,643 copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,644 copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,644 copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,645 copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,645 copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,645 copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,646 copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,646 copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,647 copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,647 copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,648 copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,648 copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,649 copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,651 copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,654 copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,656 copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,658 copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,660 copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,662 copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,664 copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,666 copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,668 copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,670 copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,672 copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,674 copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,676 copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,678 copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,680 copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,682 copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,684 copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,686 copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,688 copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,691 copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,693 copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,695 copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,696 copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,698 copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,700 copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,702 copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,704 copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,706 copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,708 copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,710 copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,712 copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,714 copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,716 copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,718 copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,720 copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,722 copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,724 copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,726 copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,728 copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,730 copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,732 copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,734 copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,736 copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,738 copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,740 copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,742 copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,744 copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,746 copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,748 copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,750 copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,752 copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,754 copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,757 copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,758 copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,760 copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,762 copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,764 copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,766 copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,768 copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,769 copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,771 copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,773 copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,775 copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,777 copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,779 copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,781 copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,784 copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,786 copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues 2023-10-10T11:11:48,788 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-10-10T11:11:48,789 copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-10-10T11:11:48,810 copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-10-10T11:11:48,812 copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign 2023-10-10T11:11:48,814 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include 2023-10-10T11:11:48,815 copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include 2023-10-10T11:11:48,817 creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src 2023-10-10T11:11:48,818 copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src 2023-10-10T11:11:48,824 creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-10-10T11:11:48,825 copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-10-10T11:11:48,843 copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping 2023-10-10T11:11:48,844 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-10-10T11:11:48,845 copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-10-10T11:11:48,865 copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-10-10T11:11:48,867 copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-10-10T11:11:48,868 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-10-10T11:11:48,869 copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-10-10T11:11:48,872 copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-10-10T11:11:48,874 copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include 2023-10-10T11:11:48,876 creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-10-10T11:11:48,877 copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-10-10T11:11:48,881 copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-10-10T11:11:48,883 copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-10-10T11:11:48,886 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-10-10T11:11:48,887 copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-10-10T11:11:48,909 copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-10-10T11:11:48,912 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-10-10T11:11:48,913 copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-10-10T11:11:48,932 copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-10-10T11:11:48,934 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-10-10T11:11:48,935 copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-10-10T11:11:48,955 copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-10-10T11:11:48,958 creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-10-10T11:11:48,959 copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-10-10T11:11:48,982 copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-10-10T11:11:48,992 UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py 2023-10-10T11:11:48,992 set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.1' 2023-10-10T11:11:48,993 running build_ext 2023-10-10T11:11:49,002 building 'moleculekit.interactions.hbonds' extension 2023-10-10T11:11:49,003 creating build/temp.linux-armv7l-cpython-311 2023-10-10T11:11:49,003 creating build/temp.linux-armv7l-cpython-311/moleculekit 2023-10-10T11:11:49,004 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions 2023-10-10T11:11:49,005 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds 2023-10-10T11:11:49,006 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3 2023-10-10T11:11:49,334 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:11:49,335 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:11:49,335 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:11:49,336 from moleculekit/interactions/hbonds/hbonds.cpp:1219: 2023-10-10T11:11:49,336 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:11:49,337 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:11:49,337 | ^~~~~~~ 2023-10-10T11:12:19,789 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:12:20,076 building 'moleculekit.interactions.pipi' extension 2023-10-10T11:12:20,077 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi 2023-10-10T11:12:20,078 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3 2023-10-10T11:12:20,381 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:12:20,382 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:12:20,383 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:12:20,383 from moleculekit/interactions/pipi/pipi.cpp:1219: 2023-10-10T11:12:20,384 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:12:20,385 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:12:20,386 | ^~~~~~~ 2023-10-10T11:12:52,984 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:12:53,274 building 'moleculekit.interactions.cationpi' extension 2023-10-10T11:12:53,275 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi 2023-10-10T11:12:53,276 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3 2023-10-10T11:12:53,582 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:12:53,583 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:12:53,583 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:12:53,584 from moleculekit/interactions/cationpi/cationpi.cpp:1219: 2023-10-10T11:12:53,584 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:12:53,585 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:12:53,585 | ^~~~~~~ 2023-10-10T11:13:26,001 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:13:26,289 building 'moleculekit.interactions.sigmahole' extension 2023-10-10T11:13:26,290 creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole 2023-10-10T11:13:26,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3 2023-10-10T11:13:26,589 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:13:26,590 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:13:26,590 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:13:26,591 from moleculekit/interactions/sigmahole/sigmahole.cpp:1219: 2023-10-10T11:13:26,592 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:13:26,592 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:13:26,593 | ^~~~~~~ 2023-10-10T11:13:58,803 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:13:59,084 building 'moleculekit.wrapping' extension 2023-10-10T11:13:59,085 creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping 2023-10-10T11:13:59,085 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3 2023-10-10T11:13:59,426 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:13:59,426 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:13:59,427 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:13:59,427 from moleculekit/wrapping/wrapping.cpp:1219: 2023-10-10T11:13:59,428 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:13:59,428 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:13:59,429 | ^~~~~~~ 2023-10-10T11:14:27,716 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:14:27,912 building 'moleculekit.bondguesser_utils' extension 2023-10-10T11:14:27,913 creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils 2023-10-10T11:14:27,914 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3 2023-10-10T11:14:28,215 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:14:28,216 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:14:28,216 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:14:28,217 from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219: 2023-10-10T11:14:28,218 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:14:28,218 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:14:28,219 | ^~~~~~~ 2023-10-10T11:14:30,527 moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’: 2023-10-10T11:14:30,528 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-10-10T11:14:30,529 19759 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { 2023-10-10T11:14:30,529 | ~~~~~~~~~~^~~~~~~~~~~ 2023-10-10T11:14:30,530 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-10-10T11:14:30,530 19771 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { 2023-10-10T11:14:30,531 | ~~~~~~~~~~^~~~~~~~~~~ 2023-10-10T11:14:30,531 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-10-10T11:14:30,532 19783 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-10-10T11:14:30,532 | ~~~~~~~~~~^~~~~~~~~~~ 2023-10-10T11:14:30,533 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,533 19822 | __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,534 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,535 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,535 19861 | __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-10-10T11:14:30,536 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,537 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,538 19900 | __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,538 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,539 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,540 19939 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,541 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,541 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,542 19945 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-10-10T11:14:30,543 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,543 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,544 19986 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,544 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,545 moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,546 19992 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,547 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,547 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,548 20033 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-10-10T11:14:30,548 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,549 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,549 20039 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,550 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,551 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,551 20080 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,552 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,552 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,553 20133 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,553 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,554 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,555 20180 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,555 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,556 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,557 20221 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,558 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,558 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,559 20227 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-10-10T11:14:30,560 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,561 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,561 20233 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,562 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,562 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,563 20280 | __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1)); 2023-10-10T11:14:30,564 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,564 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,565 20286 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,566 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,566 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,567 20327 | __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1)); 2023-10-10T11:14:30,568 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,568 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,569 20339 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,570 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,570 moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2023-10-10T11:14:30,571 20392 | __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1)); 2023-10-10T11:14:30,571 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,573 moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’: 2023-10-10T11:14:30,573 moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-10T11:14:30,574 21014 | __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes); 2023-10-10T11:14:30,574 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2023-10-10T11:14:30,575 moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-10T11:14:30,576 21051 | __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx); 2023-10-10T11:14:30,577 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-10-10T11:14:57,023 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:14:57,295 building 'moleculekit.atomselect_utils' extension 2023-10-10T11:14:57,296 creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils 2023-10-10T11:14:57,298 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3 2023-10-10T11:14:58,139 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:14:58,139 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:14:58,140 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:14:58,141 from moleculekit/atomselect_utils/atomselect_utils.cpp:1236: 2023-10-10T11:14:58,141 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:14:58,142 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:14:58,142 | ^~~~~~~ 2023-10-10T11:15:00,994 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&, std::vector >&, std::vector >&)’: 2023-10-10T11:15:00,994 moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-10T11:15:00,995 23713 | __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum); 2023-10-10T11:15:00,995 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-10-10T11:15:01,001 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector >&, std::vector >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&)’: 2023-10-10T11:15:01,002 moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-10T11:15:01,002 23965 | __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i); 2023-10-10T11:15:01,003 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-10T11:15:01,008 moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector >&, std::vector >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector >&, __Pyx_memviewslice, std::vector >&)’: 2023-10-10T11:15:01,009 moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-10T11:15:01,010 24232 | __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i); 2023-10-10T11:15:01,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-10T11:15:35,536 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:15:35,839 building 'moleculekit.distance_utils' extension 2023-10-10T11:15:35,840 creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils 2023-10-10T11:15:35,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3 2023-10-10T11:15:36,147 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:15:36,147 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:15:36,148 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:15:36,148 from moleculekit/distance_utils/distance_utils.cpp:1219: 2023-10-10T11:15:36,149 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:15:36,149 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:15:36,149 | ^~~~~~~ 2023-10-10T11:16:13,013 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:16:13,304 building 'moleculekit.occupancy_utils' extension 2023-10-10T11:16:13,305 creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils 2023-10-10T11:16:13,307 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3 2023-10-10T11:16:13,889 In file included from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-10T11:16:13,889 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-10T11:16:13,890 from /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-10T11:16:13,891 from moleculekit/occupancy_utils/occupancy_utils.cpp:1219: 2023-10-10T11:16:13,891 /tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-10T11:16:13,892 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-10T11:16:13,893 | ^~~~~~~ 2023-10-10T11:16:41,153 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:16:41,343 building 'moleculekit.xtc' extension 2023-10-10T11:16:41,344 creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils 2023-10-10T11:16:41,344 creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src 2023-10-10T11:16:41,345 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-dhvtudmt/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o 2023-10-10T11:16:42,026 moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,027 66 | "OK", 2023-10-10T11:16:42,028 | ^~~~ 2023-10-10T11:16:42,028 moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,028 67 | "Header", 2023-10-10T11:16:42,029 | ^~~~~~~~ 2023-10-10T11:16:42,029 moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,030 68 | "String", 2023-10-10T11:16:42,030 | ^~~~~~~~ 2023-10-10T11:16:42,031 moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,031 69 | "Double", 2023-10-10T11:16:42,032 | ^~~~~~~~ 2023-10-10T11:16:42,032 moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,033 70 | "Integer", 2023-10-10T11:16:42,033 | ^~~~~~~~~ 2023-10-10T11:16:42,034 moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,034 71 | "Float", 2023-10-10T11:16:42,035 | ^~~~~~~ 2023-10-10T11:16:42,035 moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,036 72 | "Unsigned integer", 2023-10-10T11:16:42,037 | ^~~~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,038 moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,038 73 | "Compressed 3D coordinate", 2023-10-10T11:16:42,039 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,040 moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,040 74 | "Closing file", 2023-10-10T11:16:42,041 | ^~~~~~~~~~~~~~ 2023-10-10T11:16:42,042 moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,043 75 | "Magic number", 2023-10-10T11:16:42,043 | ^~~~~~~~~~~~~~ 2023-10-10T11:16:42,044 moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,044 76 | "Not enough memory", 2023-10-10T11:16:42,045 | ^~~~~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,046 moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,046 77 | "End of file", 2023-10-10T11:16:42,047 | ^~~~~~~~~~~~~ 2023-10-10T11:16:42,047 moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2023-10-10T11:16:42,048 78 | "File not found" 2023-10-10T11:16:42,049 | ^~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,056 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’: 2023-10-10T11:16:42,057 moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,058 459 | while (size >= num && num_of_bits < 32) 2023-10-10T11:16:42,059 | ~~~~~^~~~~~ 2023-10-10T11:16:42,060 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’: 2023-10-10T11:16:42,060 moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,061 505 | while (bytes[num_of_bytes] >= num) 2023-10-10T11:16:42,061 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2023-10-10T11:16:42,065 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’: 2023-10-10T11:16:42,065 moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,066 614 | if (num_of_bits >= num_of_bytes * 8) 2023-10-10T11:16:42,066 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,067 moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,067 616 | for (i = 0; i < num_of_bytes; i++) 2023-10-10T11:16:42,068 | ~~^~~~~~~~~~~~~~ 2023-10-10T11:16:42,068 moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,069 624 | for (i = 0; i < num_of_bytes-1; i++) 2023-10-10T11:16:42,069 | ~~^~~~~~~~~~~~~~~~ 2023-10-10T11:16:42,071 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’: 2023-10-10T11:16:42,072 moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,072 664 | if (lastbits < num_of_bits) 2023-10-10T11:16:42,073 | ~~~~~~~~~^~~~~~~~~~~~~ 2023-10-10T11:16:42,077 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’: 2023-10-10T11:16:42,078 moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,079 785 | if(size3>xfp->buf1size) 2023-10-10T11:16:42,080 | ~~~~~^~~~~~~~~~~~~~ 2023-10-10T11:16:42,082 moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,083 842 | maxidx = (LASTIDX= size3 ) { return -1; } 2023-10-10T11:16:42,089 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,089 moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,090 935 | if(countmjh >= size3 ) { return -1; } 2023-10-10T11:16:42,091 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,091 moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,092 938 | if(countmjh >= size3 ) { return -1; } 2023-10-10T11:16:42,093 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,094 moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,094 945 | if(countmjh >= size3 ) { return -1; } 2023-10-10T11:16:42,095 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,095 moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,096 948 | if(countmjh >= size3 ) { return -1; } 2023-10-10T11:16:42,096 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,097 moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,097 951 | if(countmjh >= size3 ) { return -1; } 2023-10-10T11:16:42,098 | ~~~~~~~~~^~~~~~~~ 2023-10-10T11:16:42,098 moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable] 2023-10-10T11:16:42,099 756 | int smallidx, minidx, maxidx; 2023-10-10T11:16:42,099 | ^~~~~~ 2023-10-10T11:16:42,100 moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable] 2023-10-10T11:16:42,100 759 | int smallnum, smaller, larger, i, is_smaller, run; 2023-10-10T11:16:42,101 | ^~~~~~ 2023-10-10T11:16:42,101 moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable] 2023-10-10T11:16:42,102 763 | int errval=1; 2023-10-10T11:16:42,103 | ^~~~~~ 2023-10-10T11:16:42,104 moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’: 2023-10-10T11:16:42,105 moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,106 1011 | if(size3>xfp->buf1size) 2023-10-10T11:16:42,106 | ~~~~~^~~~~~~~~~~~~~ 2023-10-10T11:16:42,107 moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,108 1068 | countmjh++; if( countmjh> size3) { return -1; } 2023-10-10T11:16:42,109 | ~~~~~~~~^~~~~~~ 2023-10-10T11:16:42,109 moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,110 1084 | countmjh++; if( countmjh> size3) { return -1; } 2023-10-10T11:16:42,111 | ~~~~~~~~^~~~~~~ 2023-10-10T11:16:42,111 moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,112 1098 | countmjh++; if( countmjh> size3) { return -1; } 2023-10-10T11:16:42,113 | ~~~~~~~~^~~~~~~ 2023-10-10T11:16:42,113 moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,114 1137 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-10-10T11:16:42,115 | ^ 2023-10-10T11:16:42,115 moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,116 1143 | maxidx = (LASTIDXxfp->buf1size) 2023-10-10T11:16:42,123 | ~~~~~^~~~~~~~~~~~~~ 2023-10-10T11:16:42,125 moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,125 1377 | maxidx = (LASTIDXxfp->buf1size) { 2023-10-10T11:16:42,138 | ~~~~~^~~~~~~~~~~~~~ 2023-10-10T11:16:42,139 moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-10T11:16:42,139 1628 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-10-10T11:16:42,140 | ^ 2023-10-10T11:16:42,141 moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-10T11:16:42,141 1633 | maxidx = (LASTIDX::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-10-10T11:18:07,787 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-10T11:18:07,788 439 | vector<_Tp, _Alloc>:: 2023-10-10T11:18:07,789 | ^~~~~~~~~~~~~~~~~~~ 2023-10-10T11:18:08,593 In file included from /usr/include/c++/12/vector:64: 2023-10-10T11:18:08,593 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-10T11:18:08,594 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20737:32, 2023-10-10T11:18:08,595 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52: 2023-10-10T11:18:08,596 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-10T11:18:08,597 1287 | _M_realloc_insert(end(), __x); 2023-10-10T11:18:08,597 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-10T11:18:08,598 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-10T11:18:08,599 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20751:33, 2023-10-10T11:18:08,599 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52: 2023-10-10T11:18:08,600 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-10T11:18:08,601 1287 | _M_realloc_insert(end(), __x); 2023-10-10T11:18:08,602 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-10T11:18:08,602 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-10T11:18:08,603 inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20836:34, 2023-10-10T11:18:08,603 inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52: 2023-10-10T11:18:08,604 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-10T11:18:08,604 1287 | _M_realloc_insert(end(), __x); 2023-10-10T11:18:08,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-10T11:18:10,954 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so 2023-10-10T11:18:11,349 UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py 2023-10-10T11:18:11,349 set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.1' 2023-10-10T11:18:11,350 installing to build/bdist.linux-armv7l/wheel 2023-10-10T11:18:11,350 running install 2023-10-10T11:18:11,374 running install_lib 2023-10-10T11:18:11,380 creating build/bdist.linux-armv7l 2023-10-10T11:18:11,380 creating build/bdist.linux-armv7l/wheel 2023-10-10T11:18:11,383 creating build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,384 copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,386 creating build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-10-10T11:18:11,387 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-10-10T11:18:11,389 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-10-10T11:18:11,392 copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply 2023-10-10T11:18:11,397 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,427 copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,431 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,450 creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-10-10T11:18:11,451 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-10-10T11:18:11,453 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-10-10T11:18:11,455 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-10-10T11:18:11,457 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect 2023-10-10T11:18:11,460 creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-10-10T11:18:11,461 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-10-10T11:18:11,480 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils 2023-10-10T11:18:11,483 creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,483 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,485 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,488 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,490 creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-10-10T11:18:11,491 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-10-10T11:18:11,493 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-10-10T11:18:11,495 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-10-10T11:18:11,497 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools 2023-10-10T11:18:11,499 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,501 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,503 copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol 2023-10-10T11:18:11,507 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-10-10T11:18:11,508 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-10-10T11:18:11,526 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-10-10T11:18:11,528 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-10-10T11:18:11,529 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-10-10T11:18:11,531 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-10-10T11:18:11,534 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include 2023-10-10T11:18:11,536 creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-10-10T11:18:11,537 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-10-10T11:18:11,539 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-10-10T11:18:11,542 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src 2023-10-10T11:18:11,544 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils 2023-10-10T11:18:11,546 copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,547 copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,551 creating build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,551 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,553 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,555 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,557 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,560 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,562 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,564 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,566 creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-10-10T11:18:11,567 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-10-10T11:18:11,569 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools 2023-10-10T11:18:11,571 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,573 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,576 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,578 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,580 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,583 copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools 2023-10-10T11:18:11,585 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,586 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,588 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,613 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-10-10T11:18:11,614 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-10-10T11:18:11,616 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi 2023-10-10T11:18:11,640 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-10-10T11:18:11,641 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-10-10T11:18:11,664 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds 2023-10-10T11:18:11,666 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,690 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-10-10T11:18:11,691 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-10-10T11:18:11,694 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi 2023-10-10T11:18:11,714 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,716 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,738 creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-10-10T11:18:11,739 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-10-10T11:18:11,741 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole 2023-10-10T11:18:11,761 copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions 2023-10-10T11:18:11,782 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,800 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-10-10T11:18:11,801 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-10-10T11:18:11,804 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include 2023-10-10T11:18:11,805 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include 2023-10-10T11:18:11,807 creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src 2023-10-10T11:18:11,808 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src 2023-10-10T11:18:11,814 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-10-10T11:18:11,833 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign 2023-10-10T11:18:11,835 copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,837 copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,854 creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-10-10T11:18:11,855 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-10-10T11:18:11,874 copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping 2023-10-10T11:18:11,877 creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-10-10T11:18:11,878 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-10-10T11:18:11,880 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils 2023-10-10T11:18:11,901 copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,903 copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,905 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx 2023-10-10T11:18:11,906 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx 2023-10-10T11:18:11,909 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-10-10T11:18:11,910 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-10-10T11:18:11,911 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-10-10T11:18:11,914 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-10-10T11:18:11,917 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader 2023-10-10T11:18:11,920 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-10-10T11:18:11,922 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-10-10T11:18:11,924 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-10-10T11:18:11,926 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-10-10T11:18:11,928 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests 2023-10-10T11:18:11,931 creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-10-10T11:18:11,932 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-10-10T11:18:11,934 copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer 2023-10-10T11:18:11,936 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,939 creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-10-10T11:18:11,941 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-10-10T11:18:11,969 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils 2023-10-10T11:18:11,971 copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,992 copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:11,994 creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-10-10T11:18:11,995 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-10-10T11:18:12,019 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils 2023-10-10T11:18:12,021 copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,025 copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,027 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,029 copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,031 copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,033 creating build/bdist.linux-armv7l/wheel/moleculekit/share 2023-10-10T11:18:12,034 creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect 2023-10-10T11:18:12,035 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect 2023-10-10T11:18:12,037 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-10-10T11:18:12,039 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-10-10T11:18:12,041 creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr 2023-10-10T11:18:12,045 creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,046 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,047 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,049 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,051 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,053 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,054 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,056 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,058 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,060 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,062 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,063 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,065 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,067 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,069 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,071 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,073 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,074 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,076 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,078 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,080 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,081 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,083 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,085 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,086 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,088 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,089 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,091 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,092 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,094 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,096 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,098 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,100 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,102 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,104 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,105 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,107 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,109 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,111 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,113 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,115 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,117 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,118 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,120 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,121 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,123 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,125 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,126 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,128 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,130 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,132 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,133 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,135 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,136 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,138 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,140 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,141 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,143 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,145 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,147 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,149 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,151 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,153 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,155 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,156 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,158 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,160 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,162 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,163 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,165 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,167 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,169 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,170 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,172 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,174 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,176 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,177 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,179 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,181 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,182 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,184 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,186 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,188 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,190 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,191 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,193 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,195 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,197 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,198 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,200 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,201 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,203 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,205 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,207 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,208 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,210 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,212 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,214 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,215 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,217 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,219 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,221 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,222 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,224 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,226 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,228 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,229 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,232 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,233 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,235 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,237 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,238 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,240 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,242 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,243 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,245 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,247 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,248 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,250 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,252 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,254 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,256 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,257 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,259 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,261 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,263 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,265 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,267 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,269 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,270 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,272 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,274 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,276 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,278 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,280 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,282 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,283 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,285 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,287 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,289 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,290 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,293 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,294 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,296 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,298 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,300 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,302 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,304 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,306 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,308 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,310 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,311 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,314 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,316 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,318 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,320 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,322 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,323 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,325 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,327 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,329 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,330 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,332 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,334 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,336 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,338 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,339 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,341 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,343 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,345 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,347 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,349 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,351 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,353 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,355 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,357 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues 2023-10-10T11:18:12,359 copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share 2023-10-10T11:18:12,569 copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,571 copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,573 copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,575 copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,577 creating build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,578 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,580 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,582 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,584 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,587 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,589 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,591 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,593 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,595 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,598 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,600 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,602 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,605 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,608 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,611 copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections 2023-10-10T11:18:12,613 copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,615 copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,650 copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,652 copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,654 copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,700 copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,702 copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit 2023-10-10T11:18:12,704 running install_egg_info 2023-10-10T11:18:12,710 Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.1-py3.11.egg-info 2023-10-10T11:18:12,722 running install_scripts 2023-10-10T11:18:12,772 creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.1.dist-info/WHEEL 2023-10-10T11:18:12,775 creating '/tmp/pip-wheel-9pby1uqx/.tmp-w3yx36ji/moleculekit-1.8.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-10T11:18:12,777 adding 'moleculekit/__init__.py' 2023-10-10T11:18:12,779 adding 'moleculekit/_version.py' 2023-10-10T11:18:12,780 adding 'moleculekit/align.py' 2023-10-10T11:18:13,104 adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:13,118 adding 'moleculekit/bondguesser.py' 2023-10-10T11:18:13,361 adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:13,371 adding 'moleculekit/config.py' 2023-10-10T11:18:13,373 adding 'moleculekit/dihedral.py' 2023-10-10T11:18:13,374 adding 'moleculekit/distance.py' 2023-10-10T11:18:13,670 adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:13,683 adding 'moleculekit/home.py' 2023-10-10T11:18:13,684 adding 'moleculekit/logging.ini' 2023-10-10T11:18:13,698 adding 'moleculekit/molecule.py' 2023-10-10T11:18:13,926 adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:13,936 adding 'moleculekit/opm.py' 2023-10-10T11:18:13,938 adding 'moleculekit/periodictable.py' 2023-10-10T11:18:13,939 adding 'moleculekit/pymolgraphics.py' 2023-10-10T11:18:13,941 adding 'moleculekit/rcsb.py' 2023-10-10T11:18:13,942 adding 'moleculekit/rdkitintegration.py' 2023-10-10T11:18:13,954 adding 'moleculekit/readers.py' 2023-10-10T11:18:14,548 adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:14,575 adding 'moleculekit/util.py' 2023-10-10T11:18:14,576 adding 'moleculekit/version.py' 2023-10-10T11:18:14,578 adding 'moleculekit/viewer.py' 2023-10-10T11:18:14,579 adding 'moleculekit/vmd_wrapper' 2023-10-10T11:18:14,581 adding 'moleculekit/vmdgraphics.py' 2023-10-10T11:18:14,583 adding 'moleculekit/vmdviewer.py' 2023-10-10T11:18:14,817 adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:14,831 adding 'moleculekit/writers.py' 2023-10-10T11:18:15,090 adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:15,101 adding 'moleculekit/atomselect/__init__.py' 2023-10-10T11:18:15,102 adding 'moleculekit/atomselect/analyze.py' 2023-10-10T11:18:15,105 adding 'moleculekit/atomselect/atomselect.py' 2023-10-10T11:18:15,107 adding 'moleculekit/atomselect/languageparser.py' 2023-10-10T11:18:15,210 adding 'moleculekit/atomselect_utils/atomselect_utils.cpp' 2023-10-10T11:18:15,224 adding 'moleculekit/atomselect_utils/atomselect_utils.pyx' 2023-10-10T11:18:15,315 adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp' 2023-10-10T11:18:15,326 adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx' 2023-10-10T11:18:15,423 adding 'moleculekit/distance_utils/distance_utils.cpp' 2023-10-10T11:18:15,435 adding 'moleculekit/distance_utils/distance_utils.pyx' 2023-10-10T11:18:15,437 adding 'moleculekit/interactions/__init__.py' 2023-10-10T11:18:15,715 adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:15,982 adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:15,995 adding 'moleculekit/interactions/interactions.py' 2023-10-10T11:18:16,271 adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:16,556 adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so' 2023-10-10T11:18:16,657 adding 'moleculekit/interactions/cationpi/cationpi.cpp' 2023-10-10T11:18:16,668 adding 'moleculekit/interactions/cationpi/cationpi.pyx' 2023-10-10T11:18:16,758 adding 'moleculekit/interactions/hbonds/hbonds.cpp' 2023-10-10T11:18:16,769 adding 'moleculekit/interactions/hbonds/hbonds.pyx' 2023-10-10T11:18:16,859 adding 'moleculekit/interactions/pipi/pipi.cpp' 2023-10-10T11:18:16,870 adding 'moleculekit/interactions/pipi/pipi.pyx' 2023-10-10T11:18:16,961 adding 'moleculekit/interactions/sigmahole/sigmahole.cpp' 2023-10-10T11:18:16,972 adding 'moleculekit/interactions/sigmahole/sigmahole.pyx' 2023-10-10T11:18:17,058 adding 'moleculekit/occupancy_utils/occupancy_utils.cpp' 2023-10-10T11:18:17,068 adding 'moleculekit/occupancy_utils/occupancy_utils.pyx' 2023-10-10T11:18:17,069 adding 'moleculekit/pdbx/__init__.py' 2023-10-10T11:18:17,073 adding 'moleculekit/pdbx/reader/PdbxContainers.py' 2023-10-10T11:18:17,076 adding 'moleculekit/pdbx/reader/PdbxParser.py' 2023-10-10T11:18:17,078 adding 'moleculekit/pdbx/reader/PdbxReader.py' 2023-10-10T11:18:17,079 adding 'moleculekit/pdbx/reader/__init__.py' 2023-10-10T11:18:17,082 adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py' 2023-10-10T11:18:17,083 adding 'moleculekit/pdbx/tests/PdbxReaderTests.py' 2023-10-10T11:18:17,085 adding 'moleculekit/pdbx/tests/PdbxWriterTests.py' 2023-10-10T11:18:17,086 adding 'moleculekit/pdbx/tests/__init__.py' 2023-10-10T11:18:17,088 adding 'moleculekit/pdbx/writer/PdbxWriter.py' 2023-10-10T11:18:17,089 adding 'moleculekit/pdbx/writer/__init__.py' 2023-10-10T11:18:17,091 adding 'moleculekit/ply/__init__.py' 2023-10-10T11:18:17,095 adding 'moleculekit/ply/lex.py' 2023-10-10T11:18:17,107 adding 'moleculekit/ply/yacc.py' 2023-10-10T11:18:17,109 adding 'moleculekit/projections/__init__.py' 2023-10-10T11:18:17,111 adding 'moleculekit/projections/metriccoordinate.py' 2023-10-10T11:18:17,114 adding 'moleculekit/projections/metricdihedral.py' 2023-10-10T11:18:17,118 adding 'moleculekit/projections/metricdistance.py' 2023-10-10T11:18:17,120 adding 'moleculekit/projections/metricfluctuation.py' 2023-10-10T11:18:17,122 adding 'moleculekit/projections/metricgyration.py' 2023-10-10T11:18:17,126 adding 'moleculekit/projections/metricplumed2.py' 2023-10-10T11:18:17,127 adding 'moleculekit/projections/metricrmsd.py' 2023-10-10T11:18:17,129 adding 'moleculekit/projections/metricsasa.py' 2023-10-10T11:18:17,131 adding 'moleculekit/projections/metricsecondarystructure.py' 2023-10-10T11:18:17,133 adding 'moleculekit/projections/metricshell.py' 2023-10-10T11:18:17,135 adding 'moleculekit/projections/metricsphericalcoordinate.py' 2023-10-10T11:18:17,136 adding 'moleculekit/projections/metrictmscore.py' 2023-10-10T11:18:17,137 adding 'moleculekit/projections/projection.py' 2023-10-10T11:18:17,139 adding 'moleculekit/projections/util.py' 2023-10-10T11:18:17,141 adding 'moleculekit/share/ALA.cif' 2023-10-10T11:18:17,142 adding 'moleculekit/share/backbone.cif' 2023-10-10T11:18:18,438 adding 'moleculekit/share/opm_sequences.json' 2023-10-10T11:18:18,547 adding 'moleculekit/share/atomselect/atomselect.json' 2023-10-10T11:18:18,552 adding 'moleculekit/share/pdb2pqr/residues/.gitkeep' 2023-10-10T11:18:18,553 adding 'moleculekit/share/pdb2pqr/residues/004.dat' 2023-10-10T11:18:18,555 adding 'moleculekit/share/pdb2pqr/residues/004.xml' 2023-10-10T11:18:18,556 adding 'moleculekit/share/pdb2pqr/residues/03Y.dat' 2023-10-10T11:18:18,557 adding 'moleculekit/share/pdb2pqr/residues/03Y.xml' 2023-10-10T11:18:18,558 adding 'moleculekit/share/pdb2pqr/residues/0A1.dat' 2023-10-10T11:18:18,559 adding 'moleculekit/share/pdb2pqr/residues/0A1.xml' 2023-10-10T11:18:18,561 adding 'moleculekit/share/pdb2pqr/residues/0AF.dat' 2023-10-10T11:18:18,562 adding 'moleculekit/share/pdb2pqr/residues/0AF.xml' 2023-10-10T11:18:18,563 adding 'moleculekit/share/pdb2pqr/residues/0BN.dat' 2023-10-10T11:18:18,565 adding 'moleculekit/share/pdb2pqr/residues/0BN.xml' 2023-10-10T11:18:18,566 adding 'moleculekit/share/pdb2pqr/residues/1MH.dat' 2023-10-10T11:18:18,567 adding 'moleculekit/share/pdb2pqr/residues/1MH.xml' 2023-10-10T11:18:18,568 adding 'moleculekit/share/pdb2pqr/residues/2AS.dat' 2023-10-10T11:18:18,569 adding 'moleculekit/share/pdb2pqr/residues/2AS.xml' 2023-10-10T11:18:18,570 adding 'moleculekit/share/pdb2pqr/residues/2GX.dat' 2023-10-10T11:18:18,571 adding 'moleculekit/share/pdb2pqr/residues/2GX.xml' 2023-10-10T11:18:18,572 adding 'moleculekit/share/pdb2pqr/residues/2ML.dat' 2023-10-10T11:18:18,573 adding 'moleculekit/share/pdb2pqr/residues/2ML.xml' 2023-10-10T11:18:18,575 adding 'moleculekit/share/pdb2pqr/residues/2MR.dat' 2023-10-10T11:18:18,576 adding 'moleculekit/share/pdb2pqr/residues/2MR.xml' 2023-10-10T11:18:18,577 adding 'moleculekit/share/pdb2pqr/residues/4IN.dat' 2023-10-10T11:18:18,578 adding 'moleculekit/share/pdb2pqr/residues/4IN.xml' 2023-10-10T11:18:18,579 adding 'moleculekit/share/pdb2pqr/residues/4PH.dat' 2023-10-10T11:18:18,581 adding 'moleculekit/share/pdb2pqr/residues/4PH.xml' 2023-10-10T11:18:18,582 adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat' 2023-10-10T11:18:18,583 adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml' 2023-10-10T11:18:18,584 adding 'moleculekit/share/pdb2pqr/residues/5JP.dat' 2023-10-10T11:18:18,585 adding 'moleculekit/share/pdb2pqr/residues/5JP.xml' 2023-10-10T11:18:18,587 adding 'moleculekit/share/pdb2pqr/residues/AA4.dat' 2023-10-10T11:18:18,588 adding 'moleculekit/share/pdb2pqr/residues/AA4.xml' 2023-10-10T11:18:18,589 adding 'moleculekit/share/pdb2pqr/residues/ABA.dat' 2023-10-10T11:18:18,590 adding 'moleculekit/share/pdb2pqr/residues/ABA.xml' 2023-10-10T11:18:18,591 adding 'moleculekit/share/pdb2pqr/residues/AHP.dat' 2023-10-10T11:18:18,593 adding 'moleculekit/share/pdb2pqr/residues/AHP.xml' 2023-10-10T11:18:18,594 adding 'moleculekit/share/pdb2pqr/residues/ALC.dat' 2023-10-10T11:18:18,595 adding 'moleculekit/share/pdb2pqr/residues/ALC.xml' 2023-10-10T11:18:18,596 adding 'moleculekit/share/pdb2pqr/residues/ALN.dat' 2023-10-10T11:18:18,597 adding 'moleculekit/share/pdb2pqr/residues/ALN.xml' 2023-10-10T11:18:18,599 adding 'moleculekit/share/pdb2pqr/residues/ALY.dat' 2023-10-10T11:18:18,600 adding 'moleculekit/share/pdb2pqr/residues/ALY.xml' 2023-10-10T11:18:18,601 adding 'moleculekit/share/pdb2pqr/residues/APD.dat' 2023-10-10T11:18:18,602 adding 'moleculekit/share/pdb2pqr/residues/APD.xml' 2023-10-10T11:18:18,604 adding 'moleculekit/share/pdb2pqr/residues/BB8.dat' 2023-10-10T11:18:18,605 adding 'moleculekit/share/pdb2pqr/residues/BB8.xml' 2023-10-10T11:18:18,606 adding 'moleculekit/share/pdb2pqr/residues/BCS.dat' 2023-10-10T11:18:18,607 adding 'moleculekit/share/pdb2pqr/residues/BCS.xml' 2023-10-10T11:18:18,608 adding 'moleculekit/share/pdb2pqr/residues/BTK.dat' 2023-10-10T11:18:18,610 adding 'moleculekit/share/pdb2pqr/residues/BTK.xml' 2023-10-10T11:18:18,611 adding 'moleculekit/share/pdb2pqr/residues/CCS.dat' 2023-10-10T11:18:18,612 adding 'moleculekit/share/pdb2pqr/residues/CCS.xml' 2023-10-10T11:18:18,614 adding 'moleculekit/share/pdb2pqr/residues/CGU.dat' 2023-10-10T11:18:18,615 adding 'moleculekit/share/pdb2pqr/residues/CGU.xml' 2023-10-10T11:18:18,616 adding 'moleculekit/share/pdb2pqr/residues/CSA.dat' 2023-10-10T11:18:18,617 adding 'moleculekit/share/pdb2pqr/residues/CSA.xml' 2023-10-10T11:18:18,618 adding 'moleculekit/share/pdb2pqr/residues/CSO.dat' 2023-10-10T11:18:18,620 adding 'moleculekit/share/pdb2pqr/residues/CSO.xml' 2023-10-10T11:18:18,621 adding 'moleculekit/share/pdb2pqr/residues/CSP.dat' 2023-10-10T11:18:18,622 adding 'moleculekit/share/pdb2pqr/residues/CSP.xml' 2023-10-10T11:18:18,623 adding 'moleculekit/share/pdb2pqr/residues/CSS.dat' 2023-10-10T11:18:18,624 adding 'moleculekit/share/pdb2pqr/residues/CSS.xml' 2023-10-10T11:18:18,625 adding 'moleculekit/share/pdb2pqr/residues/D4P.dat' 2023-10-10T11:18:18,627 adding 'moleculekit/share/pdb2pqr/residues/D4P.xml' 2023-10-10T11:18:18,628 adding 'moleculekit/share/pdb2pqr/residues/DA2.dat' 2023-10-10T11:18:18,629 adding 'moleculekit/share/pdb2pqr/residues/DA2.xml' 2023-10-10T11:18:18,630 adding 'moleculekit/share/pdb2pqr/residues/DAB.dat' 2023-10-10T11:18:18,631 adding 'moleculekit/share/pdb2pqr/residues/DAB.xml' 2023-10-10T11:18:18,632 adding 'moleculekit/share/pdb2pqr/residues/DAH.dat' 2023-10-10T11:18:18,633 adding 'moleculekit/share/pdb2pqr/residues/DAH.xml' 2023-10-10T11:18:18,634 adding 'moleculekit/share/pdb2pqr/residues/DPP.dat' 2023-10-10T11:18:18,635 adding 'moleculekit/share/pdb2pqr/residues/DPP.xml' 2023-10-10T11:18:18,636 adding 'moleculekit/share/pdb2pqr/residues/ESC.dat' 2023-10-10T11:18:18,638 adding 'moleculekit/share/pdb2pqr/residues/ESC.xml' 2023-10-10T11:18:18,639 adding 'moleculekit/share/pdb2pqr/residues/FGL.dat' 2023-10-10T11:18:18,640 adding 'moleculekit/share/pdb2pqr/residues/FGL.xml' 2023-10-10T11:18:18,641 adding 'moleculekit/share/pdb2pqr/residues/GHG.dat' 2023-10-10T11:18:18,642 adding 'moleculekit/share/pdb2pqr/residues/GHG.xml' 2023-10-10T11:18:18,644 adding 'moleculekit/share/pdb2pqr/residues/GME.dat' 2023-10-10T11:18:18,645 adding 'moleculekit/share/pdb2pqr/residues/GME.xml' 2023-10-10T11:18:18,646 adding 'moleculekit/share/pdb2pqr/residues/GNC.dat' 2023-10-10T11:18:18,647 adding 'moleculekit/share/pdb2pqr/residues/GNC.xml' 2023-10-10T11:18:18,648 adding 'moleculekit/share/pdb2pqr/residues/HHK.dat' 2023-10-10T11:18:18,650 adding 'moleculekit/share/pdb2pqr/residues/HHK.xml' 2023-10-10T11:18:18,651 adding 'moleculekit/share/pdb2pqr/residues/HLU.dat' 2023-10-10T11:18:18,652 adding 'moleculekit/share/pdb2pqr/residues/HLU.xml' 2023-10-10T11:18:18,653 adding 'moleculekit/share/pdb2pqr/residues/HLX.dat' 2023-10-10T11:18:18,654 adding 'moleculekit/share/pdb2pqr/residues/HLX.xml' 2023-10-10T11:18:18,656 adding 'moleculekit/share/pdb2pqr/residues/HOX.dat' 2023-10-10T11:18:18,657 adding 'moleculekit/share/pdb2pqr/residues/HOX.xml' 2023-10-10T11:18:18,658 adding 'moleculekit/share/pdb2pqr/residues/HPE.dat' 2023-10-10T11:18:18,659 adding 'moleculekit/share/pdb2pqr/residues/HPE.xml' 2023-10-10T11:18:18,660 adding 'moleculekit/share/pdb2pqr/residues/HQA.dat' 2023-10-10T11:18:18,662 adding 'moleculekit/share/pdb2pqr/residues/HQA.xml' 2023-10-10T11:18:18,663 adding 'moleculekit/share/pdb2pqr/residues/HTR.dat' 2023-10-10T11:18:18,664 adding 'moleculekit/share/pdb2pqr/residues/HTR.xml' 2023-10-10T11:18:18,665 adding 'moleculekit/share/pdb2pqr/residues/HYP.dat' 2023-10-10T11:18:18,666 adding 'moleculekit/share/pdb2pqr/residues/HYP.xml' 2023-10-10T11:18:18,668 adding 'moleculekit/share/pdb2pqr/residues/I2M.dat' 2023-10-10T11:18:18,669 adding 'moleculekit/share/pdb2pqr/residues/I2M.xml' 2023-10-10T11:18:18,670 adding 'moleculekit/share/pdb2pqr/residues/IGL.dat' 2023-10-10T11:18:18,671 adding 'moleculekit/share/pdb2pqr/residues/IGL.xml' 2023-10-10T11:18:18,672 adding 'moleculekit/share/pdb2pqr/residues/IIL.dat' 2023-10-10T11:18:18,674 adding 'moleculekit/share/pdb2pqr/residues/IIL.xml' 2023-10-10T11:18:18,675 adding 'moleculekit/share/pdb2pqr/residues/IML.dat' 2023-10-10T11:18:18,676 adding 'moleculekit/share/pdb2pqr/residues/IML.xml' 2023-10-10T11:18:18,677 adding 'moleculekit/share/pdb2pqr/residues/KYN.dat' 2023-10-10T11:18:18,679 adding 'moleculekit/share/pdb2pqr/residues/KYN.xml' 2023-10-10T11:18:18,680 adding 'moleculekit/share/pdb2pqr/residues/LME.dat' 2023-10-10T11:18:18,681 adding 'moleculekit/share/pdb2pqr/residues/LME.xml' 2023-10-10T11:18:18,682 adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat' 2023-10-10T11:18:18,683 adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml' 2023-10-10T11:18:18,685 adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat' 2023-10-10T11:18:18,686 adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml' 2023-10-10T11:18:18,687 adding 'moleculekit/share/pdb2pqr/residues/M3L.dat' 2023-10-10T11:18:18,688 adding 'moleculekit/share/pdb2pqr/residues/M3L.xml' 2023-10-10T11:18:18,689 adding 'moleculekit/share/pdb2pqr/residues/ME0.dat' 2023-10-10T11:18:18,691 adding 'moleculekit/share/pdb2pqr/residues/ME0.xml' 2023-10-10T11:18:18,692 adding 'moleculekit/share/pdb2pqr/residues/MEA.dat' 2023-10-10T11:18:18,693 adding 'moleculekit/share/pdb2pqr/residues/MEA.xml' 2023-10-10T11:18:18,694 adding 'moleculekit/share/pdb2pqr/residues/MEN.dat' 2023-10-10T11:18:18,695 adding 'moleculekit/share/pdb2pqr/residues/MEN.xml' 2023-10-10T11:18:18,696 adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat' 2023-10-10T11:18:18,697 adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml' 2023-10-10T11:18:18,698 adding 'moleculekit/share/pdb2pqr/residues/MLE.dat' 2023-10-10T11:18:18,699 adding 'moleculekit/share/pdb2pqr/residues/MLE.xml' 2023-10-10T11:18:18,700 adding 'moleculekit/share/pdb2pqr/residues/MLY.dat' 2023-10-10T11:18:18,702 adding 'moleculekit/share/pdb2pqr/residues/MLY.xml' 2023-10-10T11:18:18,703 adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat' 2023-10-10T11:18:18,704 adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml' 2023-10-10T11:18:18,705 adding 'moleculekit/share/pdb2pqr/residues/MME.dat' 2023-10-10T11:18:18,707 adding 'moleculekit/share/pdb2pqr/residues/MME.xml' 2023-10-10T11:18:18,708 adding 'moleculekit/share/pdb2pqr/residues/MMO.dat' 2023-10-10T11:18:18,709 adding 'moleculekit/share/pdb2pqr/residues/MMO.xml' 2023-10-10T11:18:18,710 adding 'moleculekit/share/pdb2pqr/residues/MVA.dat' 2023-10-10T11:18:18,711 adding 'moleculekit/share/pdb2pqr/residues/MVA.xml' 2023-10-10T11:18:18,712 adding 'moleculekit/share/pdb2pqr/residues/NAL.dat' 2023-10-10T11:18:18,714 adding 'moleculekit/share/pdb2pqr/residues/NAL.xml' 2023-10-10T11:18:18,715 adding 'moleculekit/share/pdb2pqr/residues/NCY.dat' 2023-10-10T11:18:18,716 adding 'moleculekit/share/pdb2pqr/residues/NCY.xml' 2023-10-10T11:18:18,717 adding 'moleculekit/share/pdb2pqr/residues/NLE.dat' 2023-10-10T11:18:18,718 adding 'moleculekit/share/pdb2pqr/residues/NLE.xml' 2023-10-10T11:18:18,719 adding 'moleculekit/share/pdb2pqr/residues/NVA.dat' 2023-10-10T11:18:18,721 adding 'moleculekit/share/pdb2pqr/residues/NVA.xml' 2023-10-10T11:18:18,722 adding 'moleculekit/share/pdb2pqr/residues/NZC.dat' 2023-10-10T11:18:18,723 adding 'moleculekit/share/pdb2pqr/residues/NZC.xml' 2023-10-10T11:18:18,724 adding 'moleculekit/share/pdb2pqr/residues/OCY.dat' 2023-10-10T11:18:18,725 adding 'moleculekit/share/pdb2pqr/residues/OCY.xml' 2023-10-10T11:18:18,727 adding 'moleculekit/share/pdb2pqr/residues/OMX.dat' 2023-10-10T11:18:18,728 adding 'moleculekit/share/pdb2pqr/residues/OMX.xml' 2023-10-10T11:18:18,729 adding 'moleculekit/share/pdb2pqr/residues/ONL.dat' 2023-10-10T11:18:18,730 adding 'moleculekit/share/pdb2pqr/residues/ONL.xml' 2023-10-10T11:18:18,731 adding 'moleculekit/share/pdb2pqr/residues/ORM.dat' 2023-10-10T11:18:18,733 adding 'moleculekit/share/pdb2pqr/residues/ORM.xml' 2023-10-10T11:18:18,734 adding 'moleculekit/share/pdb2pqr/residues/P1L.dat' 2023-10-10T11:18:18,735 adding 'moleculekit/share/pdb2pqr/residues/P1L.xml' 2023-10-10T11:18:18,736 adding 'moleculekit/share/pdb2pqr/residues/PCA.dat' 2023-10-10T11:18:18,738 adding 'moleculekit/share/pdb2pqr/residues/PCA.xml' 2023-10-10T11:18:18,739 adding 'moleculekit/share/pdb2pqr/residues/PRK.dat' 2023-10-10T11:18:18,740 adding 'moleculekit/share/pdb2pqr/residues/PRK.xml' 2023-10-10T11:18:18,741 adding 'moleculekit/share/pdb2pqr/residues/PTR.dat' 2023-10-10T11:18:18,743 adding 'moleculekit/share/pdb2pqr/residues/PTR.xml' 2023-10-10T11:18:18,744 adding 'moleculekit/share/pdb2pqr/residues/SEP.dat' 2023-10-10T11:18:18,745 adding 'moleculekit/share/pdb2pqr/residues/SEP.xml' 2023-10-10T11:18:18,746 adding 'moleculekit/share/pdb2pqr/residues/TPO.dat' 2023-10-10T11:18:18,747 adding 'moleculekit/share/pdb2pqr/residues/TPO.xml' 2023-10-10T11:18:18,749 adding 'moleculekit/share/pdb2pqr/residues/TRO.dat' 2023-10-10T11:18:18,750 adding 'moleculekit/share/pdb2pqr/residues/TRO.xml' 2023-10-10T11:18:18,751 adding 'moleculekit/share/pdb2pqr/residues/TY2.dat' 2023-10-10T11:18:18,753 adding 'moleculekit/share/pdb2pqr/residues/TY2.xml' 2023-10-10T11:18:18,754 adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat' 2023-10-10T11:18:18,755 adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml' 2023-10-10T11:18:18,756 adding 'moleculekit/share/pdb2pqr/residues/YCM.dat' 2023-10-10T11:18:18,757 adding 'moleculekit/share/pdb2pqr/residues/YCM.xml' 2023-10-10T11:18:18,758 adding 'moleculekit/share/pdb2pqr/residues/YNM.dat' 2023-10-10T11:18:18,759 adding 'moleculekit/share/pdb2pqr/residues/YNM.xml' 2023-10-10T11:18:18,761 adding 'moleculekit/smallmol/__init__.py' 2023-10-10T11:18:18,766 adding 'moleculekit/smallmol/smallmol.py' 2023-10-10T11:18:18,768 adding 'moleculekit/smallmol/smallmollib.py' 2023-10-10T11:18:18,770 adding 'moleculekit/smallmol/test_smallmol.py' 2023-10-10T11:18:18,771 adding 'moleculekit/smallmol/test_smallmollib.py' 2023-10-10T11:18:18,773 adding 'moleculekit/smallmol/util.py' 2023-10-10T11:18:18,775 adding 'moleculekit/smallmol/tools/__init__.py' 2023-10-10T11:18:18,777 adding 'moleculekit/smallmol/tools/clustering.py' 2023-10-10T11:18:18,778 adding 'moleculekit/smallmol/tools/restrainedembed.py' 2023-10-10T11:18:18,780 adding 'moleculekit/smallmol/tools/test_tools.py' 2023-10-10T11:18:18,868 adding 'moleculekit/tmalign/tmalign_util.cpp' 2023-10-10T11:18:18,879 adding 'moleculekit/tmalign/tmalign_util.pyx' 2023-10-10T11:18:18,880 adding 'moleculekit/tmalign/tmalignlib.pxd' 2023-10-10T11:18:18,882 adding 'moleculekit/tmalign/include/TMAlign.h' 2023-10-10T11:18:18,899 adding 'moleculekit/tmalign/src/TMAlign.cpp' 2023-10-10T11:18:18,903 adding 'moleculekit/tools/__init__.py' 2023-10-10T11:18:18,905 adding 'moleculekit/tools/atomtyper.py' 2023-10-10T11:18:18,907 adding 'moleculekit/tools/autosegment.py' 2023-10-10T11:18:18,908 adding 'moleculekit/tools/crystalpacking.py' 2023-10-10T11:18:18,912 adding 'moleculekit/tools/detect.py' 2023-10-10T11:18:18,913 adding 'moleculekit/tools/docking.py' 2023-10-10T11:18:18,915 adding 'moleculekit/tools/graphalignment.py' 2023-10-10T11:18:18,917 adding 'moleculekit/tools/hhblitsprofile.py' 2023-10-10T11:18:18,918 adding 'moleculekit/tools/moleculechecks.py' 2023-10-10T11:18:18,924 adding 'moleculekit/tools/preparation.py' 2023-10-10T11:18:18,927 adding 'moleculekit/tools/preparation_customres.py' 2023-10-10T11:18:18,929 adding 'moleculekit/tools/sequencestructuralalignment.py' 2023-10-10T11:18:18,932 adding 'moleculekit/tools/voxeldescriptors.py' 2023-10-10T11:18:18,934 adding 'moleculekit/tools/obabel_tools/__init__.py' 2023-10-10T11:18:18,935 adding 'moleculekit/tools/obabel_tools/obabel_cli.py' 2023-10-10T11:18:19,022 adding 'moleculekit/wrapping/wrapping.cpp' 2023-10-10T11:18:19,032 adding 'moleculekit/wrapping/wrapping.pyx' 2023-10-10T11:18:19,120 adding 'moleculekit/xtc_utils/xtc.cpp' 2023-10-10T11:18:19,131 adding 'moleculekit/xtc_utils/xtc.pyx' 2023-10-10T11:18:19,132 adding 'moleculekit/xtc_utils/xtclib.pxd' 2023-10-10T11:18:19,135 adding 'moleculekit/xtc_utils/include/xdrfile.h' 2023-10-10T11:18:19,137 adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h' 2023-10-10T11:18:19,138 adding 'moleculekit/xtc_utils/include/xtc.h' 2023-10-10T11:18:19,145 adding 'moleculekit/xtc_utils/src/xdrfile.cpp' 2023-10-10T11:18:19,147 adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp' 2023-10-10T11:18:19,149 adding 'moleculekit/xtc_utils/src/xtc.cpp' 2023-10-10T11:18:19,151 adding 'moleculekit-1.8.1.dist-info/LICENSE' 2023-10-10T11:18:19,152 adding 'moleculekit-1.8.1.dist-info/METADATA' 2023-10-10T11:18:19,153 adding 'moleculekit-1.8.1.dist-info/WHEEL' 2023-10-10T11:18:19,154 adding 'moleculekit-1.8.1.dist-info/top_level.txt' 2023-10-10T11:18:19,158 adding 'moleculekit-1.8.1.dist-info/RECORD' 2023-10-10T11:18:19,293 removing build/bdist.linux-armv7l/wheel 2023-10-10T11:18:19,576 Building wheel for moleculekit (pyproject.toml): finished with status 'done' 2023-10-10T11:18:19,894 Created wheel for moleculekit: filename=moleculekit-1.8.1-cp311-cp311-linux_armv7l.whl size=12848602 sha256=54234b2502584f3a39096ec575c0242ca1235e4ff20283644c3bc36ab938b10d 2023-10-10T11:18:19,896 Stored in directory: /tmp/pip-ephem-wheel-cache-63tca2je/wheels/f7/91/5c/9dabf873c9170e5d5a314cc2302e544ffc24d1534186f121c2 2023-10-10T11:18:19,919 Successfully built moleculekit 2023-10-10T11:18:20,227 Removed build tracker: '/tmp/pip-build-tracker-vulcsm2x'