2023-10-10T13:33:21,780 Created temporary directory: /tmp/pip-build-tracker-h_v7k_of
2023-10-10T13:33:21,782 Initialized build tracking at /tmp/pip-build-tracker-h_v7k_of
2023-10-10T13:33:21,782 Created build tracker: /tmp/pip-build-tracker-h_v7k_of
2023-10-10T13:33:21,782 Entered build tracker: /tmp/pip-build-tracker-h_v7k_of
2023-10-10T13:33:21,783 Created temporary directory: /tmp/pip-wheel-jz6il4lr
2023-10-10T13:33:21,787 Created temporary directory: /tmp/pip-ephem-wheel-cache-_jx46sna
2023-10-10T13:33:21,812 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-10T13:33:21,816 2 location(s) to search for versions of moleculekit:
2023-10-10T13:33:21,816 * https://pypi.org/simple/moleculekit/
2023-10-10T13:33:21,816 * https://www.piwheels.org/simple/moleculekit/
2023-10-10T13:33:21,817 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-10T13:33:21,817 Getting page https://pypi.org/simple/moleculekit/
2023-10-10T13:33:21,819 Found index url https://pypi.org/simple/
2023-10-10T13:33:21,876 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-10T13:33:21,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,915   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-10T13:33:21,915   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,915   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-10T13:33:21,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,916   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-10T13:33:21,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,916   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-10T13:33:21,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,917   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-10T13:33:21,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,917   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-10T13:33:21,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,918   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-10T13:33:21,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,918   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-10T13:33:21,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,919   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-10T13:33:21,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,919   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-10T13:33:21,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,919   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-10T13:33:21,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,920   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-10T13:33:21,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,920   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-10T13:33:21,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,921   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-10T13:33:21,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,921   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-10T13:33:21,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,922   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-10T13:33:21,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,922   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-10T13:33:21,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,923   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-10T13:33:21,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,923   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-10T13:33:21,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,924   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-10T13:33:21,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,924   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-10T13:33:21,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,925   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-10T13:33:21,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,925   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-10T13:33:21,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,926   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-10T13:33:21,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,926   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-10T13:33:21,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,927   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-10T13:33:21,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,927   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-10T13:33:21,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,927   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-10T13:33:21,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,928   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-10T13:33:21,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,928   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-10T13:33:21,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,929   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-10T13:33:21,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,929   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-10T13:33:21,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-10T13:33:21,930   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-10-10T13:33:21,930   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-10T13:33:21,953   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
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2023-10-10T13:33:21,955   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-10-10T13:33:21,955   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2023-10-10T13:33:21,961   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-10-10T13:33:21,962   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-10-10T13:33:21,962   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
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2023-10-10T13:33:21,964   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-10-10T13:33:21,965   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-10-10T13:33:21,965   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-10-10T13:33:21,968   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
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2023-10-10T13:33:21,971   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2023-10-10T13:33:21,971   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-10-10T13:33:21,972   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-10T13:33:21,972   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-10T13:33:21,973   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-10T13:33:21,973   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-10T13:33:21,974   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-10T13:33:21,974   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-10T13:33:21,975   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-10T13:33:21,975   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-10T13:33:21,976   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-10T13:33:21,977   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-10T13:33:21,977   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-10T13:33:21,978   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-10T13:33:21,978   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-10T13:33:21,979   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-10T13:33:21,979   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-10T13:33:21,980   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-10-10T13:33:21,980 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-10T13:33:21,981 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-10T13:33:21,982 Found index url https://www.piwheels.org/simple/
2023-10-10T13:33:22,057 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-10T13:33:22,143   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,144   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,146   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,146   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,154   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,154   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,154   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,156   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,157   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,157   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,165   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-10-10T13:33:22,165   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-10T13:33:22,172 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-10T13:33:22,172 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-10T13:33:22,215 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-10T13:33:22,233 Collecting moleculekit==1.8.1
2023-10-10T13:33:22,235   Created temporary directory: /tmp/pip-unpack-r3ccr5mq
2023-10-10T13:33:22,378   Downloading moleculekit-1.8.1.tar.gz (6.2 MB)
2023-10-10T13:33:24,338   Added moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-h_v7k_of'
2023-10-10T13:33:24,347   Created temporary directory: /tmp/pip-build-env-r1p2ph9q
2023-10-10T13:33:24,357   Installing build dependencies: started
2023-10-10T13:33:24,358   Running command pip subprocess to install build dependencies
2023-10-10T13:33:25,512   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-10T13:33:26,053   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-10T13:33:27,638   Collecting setuptools
2023-10-10T13:33:27,719     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-10T13:33:29,062   Collecting numpy>=1.18.5
2023-10-10T13:33:30,433     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-10T13:33:32,674   Collecting Cython>=0.29.21
2023-10-10T13:33:33,476     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-10T13:33:33,849   Collecting toml
2023-10-10T13:33:33,872     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-10T13:33:34,084   Collecting versioneer[toml]==0.28
2023-10-10T13:33:34,096     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-10T13:33:34,114        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 4.0 MB/s eta 0:00:00
2023-10-10T13:33:34,242   Collecting tomli (from versioneer[toml]==0.28)
2023-10-10T13:33:34,261     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-10T13:33:36,285   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-10T13:33:36,321     Creating /tmp/pip-build-env-r1p2ph9q/overlay/bin
2023-10-10T13:33:36,323     changing mode of /tmp/pip-build-env-r1p2ph9q/overlay/bin/versioneer to 755
2023-10-10T13:33:46,156     changing mode of /tmp/pip-build-env-r1p2ph9q/overlay/bin/f2py to 755
2023-10-10T13:33:49,585     changing mode of /tmp/pip-build-env-r1p2ph9q/overlay/bin/cygdb to 755
2023-10-10T13:33:49,587     changing mode of /tmp/pip-build-env-r1p2ph9q/overlay/bin/cython to 755
2023-10-10T13:33:49,589     changing mode of /tmp/pip-build-env-r1p2ph9q/overlay/bin/cythonize to 755
2023-10-10T13:33:49,615   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-10T13:33:49,615   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-10T13:33:49,616   Successfully installed Cython-3.0.3 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-10T13:33:50,223   Installing build dependencies: finished with status 'done'
2023-10-10T13:33:50,228   Getting requirements to build wheel: started
2023-10-10T13:33:50,229   Running command Getting requirements to build wheel
2023-10-10T13:34:28,885   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,886   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,886   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-10T13:34:28,887   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-10T13:34:28,888   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-10T13:34:28,888   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-10T13:34:28,888   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-10T13:34:28,888   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-10T13:34:28,888   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-10T13:34:28,888   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-10T13:34:28,888   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-10T13:34:28,889   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-10T13:34:28,889   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-10T13:34:28,889   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-10T13:34:28,889   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-10T13:34:29,168   running egg_info
2023-10-10T13:34:29,174   writing moleculekit.egg-info/PKG-INFO
2023-10-10T13:34:29,177   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-10T13:34:29,179   writing requirements to moleculekit.egg-info/requires.txt
2023-10-10T13:34:29,180   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-10T13:34:29,203   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,204   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,204   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-10T13:34:29,204   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,204   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,204   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,205   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,206   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,206   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,206   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:29,206   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-10T13:34:29,220   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:29,250   reading manifest template 'MANIFEST.in'
2023-10-10T13:34:29,463   no previously-included directories found matching 'moleculekit/test-data'
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2023-10-10T13:34:29,482   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:30,435   Getting requirements to build wheel: finished with status 'done'
2023-10-10T13:34:30,450   Installing backend dependencies: started
2023-10-10T13:34:30,451   Running command pip subprocess to install backend dependencies
2023-10-10T13:34:31,711   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-10T13:34:32,296   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-10T13:34:32,641   Collecting wheel
2023-10-10T13:34:32,660     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-10T13:34:34,277   Installing collected packages: wheel
2023-10-10T13:34:34,495     Creating /tmp/pip-build-env-r1p2ph9q/normal/bin
2023-10-10T13:34:34,497     changing mode of /tmp/pip-build-env-r1p2ph9q/normal/bin/wheel to 755
2023-10-10T13:34:34,511   Successfully installed wheel-0.41.2
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2023-10-10T13:34:34,919   Created temporary directory: /tmp/pip-modern-metadata-ba47yhb3
2023-10-10T13:34:34,922   Preparing metadata (pyproject.toml): started
2023-10-10T13:34:34,923   Running command Preparing metadata (pyproject.toml)
2023-10-10T13:34:37,263   running dist_info
2023-10-10T13:34:37,265   creating /tmp/pip-modern-metadata-ba47yhb3/moleculekit.egg-info
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2023-10-10T13:34:37,307   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,307   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,308   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,309   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:37,316   reading manifest file '/tmp/pip-modern-metadata-ba47yhb3/moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:37,318   reading manifest template 'MANIFEST.in'
2023-10-10T13:34:37,549   no previously-included directories found matching 'moleculekit/test-data'
2023-10-10T13:34:37,550   no previously-included directories found matching 'moleculekit/tests'
2023-10-10T13:34:37,551   no previously-included directories found matching 'package'
2023-10-10T13:34:37,551   adding license file 'LICENSE'
2023-10-10T13:34:37,563   writing manifest file '/tmp/pip-modern-metadata-ba47yhb3/moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:37,571   creating '/tmp/pip-modern-metadata-ba47yhb3/moleculekit-1.8.1.dist-info'
2023-10-10T13:34:37,767   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-10T13:34:37,774   Source in /tmp/pip-wheel-jz6il4lr/moleculekit_1f82f3ffb1544dbf8b5fbe2ec2d5f381 has version 1.8.1, which satisfies requirement moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz
2023-10-10T13:34:37,775   Removed moleculekit==1.8.1 from https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-h_v7k_of'
2023-10-10T13:34:37,781 Created temporary directory: /tmp/pip-unpack-kxyn7zjq
2023-10-10T13:34:37,781 Created temporary directory: /tmp/pip-unpack-9wkini9_
2023-10-10T13:34:37,789 Building wheels for collected packages: moleculekit
2023-10-10T13:34:37,794   Created temporary directory: /tmp/pip-wheel-fufe4037
2023-10-10T13:34:37,794   Destination directory: /tmp/pip-wheel-fufe4037
2023-10-10T13:34:37,796   Building wheel for moleculekit (pyproject.toml): started
2023-10-10T13:34:37,797   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-10T13:34:40,231   running bdist_wheel
2023-10-10T13:34:40,248   running build
2023-10-10T13:34:40,248   running build_py
2023-10-10T13:34:40,256   creating build
2023-10-10T13:34:40,256   creating build/lib.linux-armv7l-cpython-39
2023-10-10T13:34:40,257   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,258   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,260   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,263   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,265   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,267   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,268   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,272   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,275   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,276   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,278   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,280   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,281   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,282   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,284   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,286   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,289   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,291   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,293   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,295   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,297   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,299   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,302   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-10T13:34:40,303   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-10T13:34:40,305   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,305   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,308   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,310   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,313   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,314   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,317   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-10T13:34:40,319   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-10T13:34:40,320   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-10T13:34:40,323   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-10T13:34:40,325   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-10T13:34:40,326   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-10T13:34:40,329   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-10T13:34:40,330   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-10T13:34:40,335   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,336   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,338   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,341   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,342   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,344   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,346   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,348   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,350   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,352   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,354   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,356   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,359   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,361   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,363   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,365   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-10T13:34:40,368   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,369   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,371   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,373   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,375   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,377   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,379   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,382   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,384   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,386   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,388   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,390   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,393   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,395   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-10T13:34:40,398   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-10T13:34:40,399   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-10T13:34:40,401   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-10T13:34:40,403   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-10T13:34:40,405   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-10T13:34:40,407   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-10T13:34:40,408   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-10T13:34:40,409   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-10T13:34:40,412   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-10T13:34:40,413   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-10T13:34:40,415   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-10T13:34:40,417   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-10T13:34:40,418   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-10T13:34:40,421   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-10T13:34:40,422   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-10T13:34:40,424   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-10T13:34:40,427   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-10T13:34:40,428   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-10T13:34:40,431   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-10T13:34:40,432   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-10T13:34:40,434   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-10T13:34:40,436   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-10T13:34:40,437   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-10T13:34:40,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-10T13:34:40,441   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-10T13:34:40,443   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-10T13:34:40,444   running egg_info
2023-10-10T13:34:40,450   writing moleculekit.egg-info/PKG-INFO
2023-10-10T13:34:40,453   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-10T13:34:40,454   writing requirements to moleculekit.egg-info/requires.txt
2023-10-10T13:34:40,455   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-10T13:34:40,469   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,469   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,469   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,469   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,469   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,470   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,471   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,472   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,473   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,474   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,475   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,476   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,476   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,476   dependency /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-10T13:34:40,482   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:40,490   reading manifest template 'MANIFEST.in'
2023-10-10T13:34:40,715   no previously-included directories found matching 'moleculekit/test-data'
2023-10-10T13:34:40,716   no previously-included directories found matching 'moleculekit/tests'
2023-10-10T13:34:40,717   no previously-included directories found matching 'package'
2023-10-10T13:34:40,717   adding license file 'LICENSE'
2023-10-10T13:34:40,734   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-10T13:34:40,744   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-10T13:34:40,744   !!

2023-10-10T13:34:40,744           ********************************************************************************
2023-10-10T13:34:40,744           ############################
2023-10-10T13:34:40,745           # Package would be ignored #
2023-10-10T13:34:40,745           ############################
2023-10-10T13:34:40,745           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-10T13:34:40,745           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,745           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,745           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-10T13:34:40,745           to the `packages` configuration field.

2023-10-10T13:34:40,746           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,746           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,746           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,746           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,746           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,747           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-10T13:34:40,747           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-10T13:34:40,747           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,747           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,747           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,747           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,747           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,748           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,748                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,748                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,748                 directory, all directories are treated like packages.
2023-10-10T13:34:40,748           ********************************************************************************

2023-10-10T13:34:40,749   !!
2023-10-10T13:34:40,749     check.warn(importable)
2023-10-10T13:34:40,749   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-10T13:34:40,749   !!

2023-10-10T13:34:40,749           ********************************************************************************
2023-10-10T13:34:40,749           ############################
2023-10-10T13:34:40,749           # Package would be ignored #
2023-10-10T13:34:40,750           ############################
2023-10-10T13:34:40,750           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-10T13:34:40,750           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,750           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,750           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-10T13:34:40,750           to the `packages` configuration field.

2023-10-10T13:34:40,750           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,751           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,751           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,751           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,751           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,751           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-10T13:34:40,751           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-10T13:34:40,752           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,752           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,752           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,752           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,752           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,753           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,753                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,753                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,753                 directory, all directories are treated like packages.
2023-10-10T13:34:40,753           ********************************************************************************

2023-10-10T13:34:40,753   !!
2023-10-10T13:34:40,753     check.warn(importable)
2023-10-10T13:34:40,754   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-10T13:34:40,754   !!

2023-10-10T13:34:40,754           ********************************************************************************
2023-10-10T13:34:40,754           ############################
2023-10-10T13:34:40,754           # Package would be ignored #
2023-10-10T13:34:40,754           ############################
2023-10-10T13:34:40,754           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-10T13:34:40,754           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,755           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,755           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-10T13:34:40,755           to the `packages` configuration field.

2023-10-10T13:34:40,755           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,755           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,755           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,756           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,756           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,756           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-10T13:34:40,756           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-10T13:34:40,756           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,756           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,756           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,757           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,757           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,757           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,757                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,757                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,758                 directory, all directories are treated like packages.
2023-10-10T13:34:40,758           ********************************************************************************

2023-10-10T13:34:40,758   !!
2023-10-10T13:34:40,758     check.warn(importable)
2023-10-10T13:34:40,758   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-10T13:34:40,758   !!

2023-10-10T13:34:40,758           ********************************************************************************
2023-10-10T13:34:40,759           ############################
2023-10-10T13:34:40,759           # Package would be ignored #
2023-10-10T13:34:40,759           ############################
2023-10-10T13:34:40,759           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-10T13:34:40,759           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,759           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,759           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-10T13:34:40,759           to the `packages` configuration field.

2023-10-10T13:34:40,760           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,760           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,760           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,760           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,760           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,761           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-10T13:34:40,761           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-10T13:34:40,761           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,761           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,761           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,761           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,761           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,762           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,762                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,762                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,762                 directory, all directories are treated like packages.
2023-10-10T13:34:40,762           ********************************************************************************

2023-10-10T13:34:40,762   !!
2023-10-10T13:34:40,763     check.warn(importable)
2023-10-10T13:34:40,763   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-10T13:34:40,763   !!

2023-10-10T13:34:40,763           ********************************************************************************
2023-10-10T13:34:40,763           ############################
2023-10-10T13:34:40,763           # Package would be ignored #
2023-10-10T13:34:40,763           ############################
2023-10-10T13:34:40,763           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-10T13:34:40,764           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,764           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,764           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-10T13:34:40,764           to the `packages` configuration field.

2023-10-10T13:34:40,764           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,764           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,764           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,765           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,765           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,765           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-10T13:34:40,765           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-10T13:34:40,765           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,765           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,765           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,766           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,766           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,766           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,767                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,767                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,767                 directory, all directories are treated like packages.
2023-10-10T13:34:40,767           ********************************************************************************

2023-10-10T13:34:40,767   !!
2023-10-10T13:34:40,767     check.warn(importable)
2023-10-10T13:34:40,767   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-10T13:34:40,767   !!

2023-10-10T13:34:40,768           ********************************************************************************
2023-10-10T13:34:40,768           ############################
2023-10-10T13:34:40,768           # Package would be ignored #
2023-10-10T13:34:40,768           ############################
2023-10-10T13:34:40,768           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-10T13:34:40,768           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,768           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,769           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-10T13:34:40,769           to the `packages` configuration field.

2023-10-10T13:34:40,769           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,769           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,769           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,769           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,770           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,770           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-10T13:34:40,770           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-10T13:34:40,770           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,770           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,770           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,770           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,771           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,771                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,771                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,771                 directory, all directories are treated like packages.
2023-10-10T13:34:40,771           ********************************************************************************

2023-10-10T13:34:40,772   !!
2023-10-10T13:34:40,772     check.warn(importable)
2023-10-10T13:34:40,772   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-10T13:34:40,772   !!

2023-10-10T13:34:40,772           ********************************************************************************
2023-10-10T13:34:40,772           ############################
2023-10-10T13:34:40,772           # Package would be ignored #
2023-10-10T13:34:40,773           ############################
2023-10-10T13:34:40,773           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-10T13:34:40,773           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,773           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,773           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-10T13:34:40,773           to the `packages` configuration field.

2023-10-10T13:34:40,773           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,773           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,774           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,774           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,774           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,774           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-10T13:34:40,774           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-10T13:34:40,774           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,775           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,775           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,775           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,775           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,775           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,775                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,776                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,776                 directory, all directories are treated like packages.
2023-10-10T13:34:40,776           ********************************************************************************

2023-10-10T13:34:40,776   !!
2023-10-10T13:34:40,776     check.warn(importable)
2023-10-10T13:34:40,776   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-10T13:34:40,776   !!

2023-10-10T13:34:40,777           ********************************************************************************
2023-10-10T13:34:40,777           ############################
2023-10-10T13:34:40,777           # Package would be ignored #
2023-10-10T13:34:40,777           ############################
2023-10-10T13:34:40,777           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-10T13:34:40,777           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,777           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,777           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-10T13:34:40,778           to the `packages` configuration field.

2023-10-10T13:34:40,778           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,778           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,778           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,778           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,778           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,779           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-10T13:34:40,779           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-10T13:34:40,779           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,779           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,779           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,779           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,779           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,780           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,780                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,780                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,780                 directory, all directories are treated like packages.
2023-10-10T13:34:40,780           ********************************************************************************

2023-10-10T13:34:40,780   !!
2023-10-10T13:34:40,780     check.warn(importable)
2023-10-10T13:34:40,781   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-10T13:34:40,781   !!

2023-10-10T13:34:40,781           ********************************************************************************
2023-10-10T13:34:40,781           ############################
2023-10-10T13:34:40,781           # Package would be ignored #
2023-10-10T13:34:40,781           ############################
2023-10-10T13:34:40,781           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-10T13:34:40,781           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,782           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,782           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-10T13:34:40,782           to the `packages` configuration field.

2023-10-10T13:34:40,782           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,782           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,782           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,783           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,783           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,783           If you don't want 'moleculekit.share' to be distributed and are
2023-10-10T13:34:40,783           already explicitly excluding 'moleculekit.share' via
2023-10-10T13:34:40,783           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,783           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,783           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,784           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,784           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,784           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,784                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,784                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,785                 directory, all directories are treated like packages.
2023-10-10T13:34:40,785           ********************************************************************************

2023-10-10T13:34:40,785   !!
2023-10-10T13:34:40,785     check.warn(importable)
2023-10-10T13:34:40,785   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-10T13:34:40,785   !!

2023-10-10T13:34:40,786           ********************************************************************************
2023-10-10T13:34:40,786           ############################
2023-10-10T13:34:40,786           # Package would be ignored #
2023-10-10T13:34:40,786           ############################
2023-10-10T13:34:40,786           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-10T13:34:40,786           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,786           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,786           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-10T13:34:40,787           to the `packages` configuration field.

2023-10-10T13:34:40,787           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,787           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,787           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,787           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,788           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,788           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-10T13:34:40,788           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-10T13:34:40,788           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,788           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,788           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,789           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,789           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,789           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,789                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,789                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,789                 directory, all directories are treated like packages.
2023-10-10T13:34:40,790           ********************************************************************************

2023-10-10T13:34:40,790   !!
2023-10-10T13:34:40,790     check.warn(importable)
2023-10-10T13:34:40,790   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-10T13:34:40,790   !!

2023-10-10T13:34:40,790           ********************************************************************************
2023-10-10T13:34:40,791           ############################
2023-10-10T13:34:40,791           # Package would be ignored #
2023-10-10T13:34:40,791           ############################
2023-10-10T13:34:40,791           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-10T13:34:40,791           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,791           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,791           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-10T13:34:40,792           to the `packages` configuration field.

2023-10-10T13:34:40,792           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,792           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,792           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,792           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,793           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,793           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-10T13:34:40,793           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-10T13:34:40,793           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,793           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,793           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,793           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,794           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,794           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,794                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,794                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,794                 directory, all directories are treated like packages.
2023-10-10T13:34:40,794           ********************************************************************************

2023-10-10T13:34:40,795   !!
2023-10-10T13:34:40,795     check.warn(importable)
2023-10-10T13:34:40,795   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-10T13:34:40,795   !!

2023-10-10T13:34:40,795           ********************************************************************************
2023-10-10T13:34:40,795           ############################
2023-10-10T13:34:40,796           # Package would be ignored #
2023-10-10T13:34:40,796           ############################
2023-10-10T13:34:40,796           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-10T13:34:40,796           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,796           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,796           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-10T13:34:40,796           to the `packages` configuration field.

2023-10-10T13:34:40,797           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,797           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,797           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,797           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,797           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,798           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-10T13:34:40,798           already explicitly excluding 'moleculekit.tmalign' via
2023-10-10T13:34:40,798           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,798           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,798           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,799           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,799           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,799           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,799                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,799                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,800                 directory, all directories are treated like packages.
2023-10-10T13:34:40,800           ********************************************************************************

2023-10-10T13:34:40,800   !!
2023-10-10T13:34:40,800     check.warn(importable)
2023-10-10T13:34:40,800   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-10T13:34:40,800   !!

2023-10-10T13:34:40,801           ********************************************************************************
2023-10-10T13:34:40,801           ############################
2023-10-10T13:34:40,801           # Package would be ignored #
2023-10-10T13:34:40,801           ############################
2023-10-10T13:34:40,801           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-10T13:34:40,801           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,802           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,802           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-10T13:34:40,802           to the `packages` configuration field.

2023-10-10T13:34:40,802           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,803           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,803           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,803           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,803           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,804           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-10T13:34:40,804           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-10T13:34:40,804           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,804           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,804           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,805           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,805           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,806           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,806                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,806                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,806                 directory, all directories are treated like packages.
2023-10-10T13:34:40,806           ********************************************************************************

2023-10-10T13:34:40,807   !!
2023-10-10T13:34:40,807     check.warn(importable)
2023-10-10T13:34:40,807   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-10T13:34:40,807   !!

2023-10-10T13:34:40,807           ********************************************************************************
2023-10-10T13:34:40,807           ############################
2023-10-10T13:34:40,808           # Package would be ignored #
2023-10-10T13:34:40,808           ############################
2023-10-10T13:34:40,808           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-10T13:34:40,808           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,808           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,808           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-10T13:34:40,809           to the `packages` configuration field.

2023-10-10T13:34:40,809           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,809           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,809           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,810           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,810           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,810           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-10T13:34:40,810           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-10T13:34:40,810           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,810           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,811           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,811           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,811           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,811           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,812                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,812                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,812                 directory, all directories are treated like packages.
2023-10-10T13:34:40,812           ********************************************************************************

2023-10-10T13:34:40,812   !!
2023-10-10T13:34:40,812     check.warn(importable)
2023-10-10T13:34:40,812   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-10T13:34:40,813   !!

2023-10-10T13:34:40,813           ********************************************************************************
2023-10-10T13:34:40,813           ############################
2023-10-10T13:34:40,813           # Package would be ignored #
2023-10-10T13:34:40,813           ############################
2023-10-10T13:34:40,813           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-10T13:34:40,813           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,814           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,814           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-10T13:34:40,814           to the `packages` configuration field.

2023-10-10T13:34:40,814           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,814           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,814           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,815           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,815           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,815           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-10T13:34:40,815           already explicitly excluding 'moleculekit.wrapping' via
2023-10-10T13:34:40,815           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,815           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,815           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,816           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,816           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,816           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,816                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,817                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,817                 directory, all directories are treated like packages.
2023-10-10T13:34:40,817           ********************************************************************************

2023-10-10T13:34:40,817   !!
2023-10-10T13:34:40,817     check.warn(importable)
2023-10-10T13:34:40,817   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-10T13:34:40,817   !!

2023-10-10T13:34:40,818           ********************************************************************************
2023-10-10T13:34:40,818           ############################
2023-10-10T13:34:40,818           # Package would be ignored #
2023-10-10T13:34:40,818           ############################
2023-10-10T13:34:40,818           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-10T13:34:40,818           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,819           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,819           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-10T13:34:40,819           to the `packages` configuration field.

2023-10-10T13:34:40,819           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,819           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,819           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,819           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,820           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,820           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-10T13:34:40,820           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-10T13:34:40,820           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,820           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,820           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,821           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,821           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,821           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,821                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,821                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,822                 directory, all directories are treated like packages.
2023-10-10T13:34:40,822           ********************************************************************************

2023-10-10T13:34:40,822   !!
2023-10-10T13:34:40,822     check.warn(importable)
2023-10-10T13:34:40,822   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-10T13:34:40,822   !!

2023-10-10T13:34:40,823           ********************************************************************************
2023-10-10T13:34:40,823           ############################
2023-10-10T13:34:40,823           # Package would be ignored #
2023-10-10T13:34:40,823           ############################
2023-10-10T13:34:40,823           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-10T13:34:40,823           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,823           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,823           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-10T13:34:40,824           to the `packages` configuration field.

2023-10-10T13:34:40,824           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,824           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,824           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,824           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,825           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,825           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-10T13:34:40,825           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-10T13:34:40,825           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,825           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,825           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,825           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,826           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,826           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,826                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,826                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,827                 directory, all directories are treated like packages.
2023-10-10T13:34:40,827           ********************************************************************************

2023-10-10T13:34:40,827   !!
2023-10-10T13:34:40,828     check.warn(importable)
2023-10-10T13:34:40,828   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-10T13:34:40,828   !!

2023-10-10T13:34:40,829           ********************************************************************************
2023-10-10T13:34:40,829           ############################
2023-10-10T13:34:40,829           # Package would be ignored #
2023-10-10T13:34:40,829           ############################
2023-10-10T13:34:40,829           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-10T13:34:40,829           but it is absent from setuptools' `packages` configuration.

2023-10-10T13:34:40,830           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-10T13:34:40,830           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-10T13:34:40,830           to the `packages` configuration field.

2023-10-10T13:34:40,830           Alternatively, you can also rely on setuptools' discovery methods
2023-10-10T13:34:40,830           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-10T13:34:40,831           instead of `find_packages(...)`/`find:`).

2023-10-10T13:34:40,831           You can read more about "package discovery" on setuptools documentation page:

2023-10-10T13:34:40,831           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-10T13:34:40,832           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-10T13:34:40,832           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-10T13:34:40,832           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-10T13:34:40,832           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-10T13:34:40,832           combination with a more fine grained `package-data` configuration.

2023-10-10T13:34:40,832           You can read more about "package data files" on setuptools documentation page:

2023-10-10T13:34:40,833           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-10T13:34:40,833           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-10T13:34:40,833                 even if it does not contain any `.py` files.
2023-10-10T13:34:40,833                 On the other hand, currently there is no concept of package data
2023-10-10T13:34:40,833                 directory, all directories are treated like packages.
2023-10-10T13:34:40,834           ********************************************************************************

2023-10-10T13:34:40,834   !!
2023-10-10T13:34:40,834     check.warn(importable)
2023-10-10T13:34:40,834   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,834   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:40,834   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-10T13:34:40,834   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-10T13:34:40,835   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-10T13:34:40,835   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-10T13:34:40,835   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-10T13:34:40,886   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-10T13:34:40,888   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-10T13:34:40,889   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-10T13:34:40,910   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-10T13:34:40,912   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-10T13:34:40,913   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-10T13:34:40,932   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-10T13:34:40,934   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-10T13:34:40,935   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-10T13:34:40,938   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-10T13:34:40,940   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-10T13:34:41,146   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-10T13:34:41,147   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-10T13:34:41,149   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-10T13:34:41,150   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,151   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,154   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,156   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,158   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,160   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,162   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,164   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,166   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,168   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,170   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,172   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,175   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,178   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,180   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,182   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,184   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,186   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,188   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,190   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,192   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,194   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,197   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,198   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,200   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,202   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,205   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,206   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,209   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,210   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,212   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,214   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,216   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,218   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,220   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,222   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,224   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,226   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,228   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,230   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,232   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,233   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,235   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,237   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,239   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,241   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,243   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,245   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,247   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,248   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,251   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,253   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,255   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,257   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,259   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,260   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,263   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,264   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,266   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,268   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,270   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,272   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,274   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,276   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,278   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,280   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,282   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,284   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,286   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,288   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,290   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,292   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,294   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,296   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,297   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,299   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,301   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,303   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,305   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,307   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,309   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,311   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,313   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,315   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,318   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,319   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,321   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,323   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,325   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,327   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,329   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,331   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,333   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,335   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,337   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,339   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,341   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,343   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,345   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,347   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,348   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,350   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,352   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,355   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,357   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,359   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,361   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,362   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,365   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,366   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,368   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,370   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,372   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,374   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,376   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,378   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,381   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,382   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,385   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,386   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,388   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,390   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,392   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,394   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,396   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,398   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,400   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,402   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,404   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,406   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,408   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,410   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,411   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,413   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,415   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,417   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,419   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,421   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,423   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,425   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,427   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,429   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,431   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,433   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,435   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,437   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,439   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,441   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,443   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,444   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,446   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,448   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,450   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,452   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,454   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,456   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,458   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,460   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,462   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,464   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,466   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,468   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,470   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,472   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,474   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,476   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,478   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,480   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,482   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,484   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,485   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,487   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,490   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,492   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,494   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,496   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-10T13:34:41,498   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-10T13:34:41,499   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-10T13:34:41,526   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-10T13:34:41,528   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-10T13:34:41,530   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-10T13:34:41,531   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-10T13:34:41,533   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-10T13:34:41,534   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-10T13:34:41,539   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-10T13:34:41,540   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-10T13:34:41,558   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-10T13:34:41,559   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-10T13:34:41,560   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-10T13:34:41,588   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-10T13:34:41,589   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-10T13:34:41,591   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-10T13:34:41,592   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-10T13:34:41,595   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-10T13:34:41,597   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-10T13:34:41,599   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-10T13:34:41,600   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-10T13:34:41,604   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-10T13:34:41,606   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-10T13:34:41,609   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-10T13:34:41,609   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-10T13:34:41,639   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-10T13:34:41,642   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-10T13:34:41,643   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-10T13:34:41,663   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-10T13:34:41,665   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-10T13:34:41,667   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-10T13:34:41,686   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-10T13:34:41,688   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-10T13:34:41,689   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-10T13:34:41,710   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-10T13:34:41,722   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-10T13:34:41,722   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.1'
2023-10-10T13:34:41,722   running build_ext
2023-10-10T13:34:41,733   building 'moleculekit.interactions.hbonds' extension
2023-10-10T13:34:41,734   creating build/temp.linux-armv7l-cpython-39
2023-10-10T13:34:41,735   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-10T13:34:41,735   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-10T13:34:41,736   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-10T13:34:41,737   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-10T13:34:42,033   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:34:42,033                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:34:42,033                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:34:42,033                    from moleculekit/interactions/hbonds/hbonds.cpp:1219:
2023-10-10T13:34:42,033   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:34:42,033      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:34:42,034         |  ^~~~~~~
2023-10-10T13:35:08,312   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:35:08,629   building 'moleculekit.interactions.pipi' extension
2023-10-10T13:35:08,630   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-10T13:35:08,630   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-10T13:35:08,868   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:35:08,868                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:35:08,868                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:35:08,868                    from moleculekit/interactions/pipi/pipi.cpp:1219:
2023-10-10T13:35:08,868   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:35:08,868      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:35:08,869         |  ^~~~~~~
2023-10-10T13:35:37,140   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:35:37,455   building 'moleculekit.interactions.cationpi' extension
2023-10-10T13:35:37,456   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-10T13:35:37,457   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-10T13:35:37,691   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:35:37,692                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:35:37,692                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:35:37,692                    from moleculekit/interactions/cationpi/cationpi.cpp:1219:
2023-10-10T13:35:37,692   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:35:37,692      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:35:37,692         |  ^~~~~~~
2023-10-10T13:36:05,666   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:36:05,983   building 'moleculekit.interactions.sigmahole' extension
2023-10-10T13:36:05,984   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-10T13:36:05,984   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-10T13:36:06,219   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:36:06,219                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:36:06,219                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:36:06,220                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1219:
2023-10-10T13:36:06,220   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:36:06,220      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:36:06,220         |  ^~~~~~~
2023-10-10T13:36:33,567   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:36:33,886   building 'moleculekit.wrapping' extension
2023-10-10T13:36:33,887   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-10T13:36:33,887   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-10T13:36:34,118   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:36:34,119                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:36:34,119                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:36:34,119                    from moleculekit/wrapping/wrapping.cpp:1219:
2023-10-10T13:36:34,119   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:36:34,119      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:36:34,119         |  ^~~~~~~
2023-10-10T13:36:57,921   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:36:58,151   building 'moleculekit.bondguesser_utils' extension
2023-10-10T13:36:58,152   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-10T13:36:58,153   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-10T13:36:58,385   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:36:58,385                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:36:58,385                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:36:58,385                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219:
2023-10-10T13:36:58,385   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:36:58,386      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:36:58,386         |  ^~~~~~~
2023-10-10T13:36:59,962   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-10T13:36:59,962   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-10T13:36:59,962   19759 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-10T13:36:59,962         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-10T13:36:59,962   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-10T13:36:59,963   19771 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-10T13:36:59,963         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-10T13:36:59,963   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-10T13:36:59,963   19783 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-10T13:36:59,963         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-10T13:36:59,963   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,964   19822 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,964         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,964   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,964   19861 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-10T13:36:59,964         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,964   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,964   19900 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,965         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,965   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,965   19939 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,965         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,965   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,965   19945 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-10T13:36:59,965         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,965   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,966   19986 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,966         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,966   19992 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,966         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,966   20033 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-10T13:36:59,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,967   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,967   20039 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,967   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,967   20080 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,967   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,968   20133 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,968         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,968   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,968   20180 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,968         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,968   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,969   20221 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,969         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,969   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,969   20227 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-10T13:36:59,969         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,969   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,969   20233 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,969         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,970   20280 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-10T13:36:59,970         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,970   20286 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,970         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,971   20327 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-10T13:36:59,971         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,971   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,971   20339 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,971         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,971   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-10T13:36:59,971   20392 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-10T13:36:59,972         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,990   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-10T13:36:59,990   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-10T13:36:59,991   21014 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-10T13:36:59,991         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-10T13:36:59,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-10T13:36:59,991   21051 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-10T13:36:59,991         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-10T13:37:23,089   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:37:23,388   building 'moleculekit.atomselect_utils' extension
2023-10-10T13:37:23,389   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-10T13:37:23,389   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-10T13:37:23,623   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:37:23,623                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:37:23,624                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:37:23,624                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1236:
2023-10-10T13:37:23,624   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:37:23,624      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:37:23,624         |  ^~~~~~~
2023-10-10T13:37:25,346   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-10T13:37:25,346   moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-10T13:37:25,346   23713 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-10T13:37:25,347         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-10T13:37:25,351   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-10T13:37:25,351   moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-10T13:37:25,352   23965 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-10T13:37:25,352         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-10T13:37:25,356   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-10T13:37:25,357   moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-10T13:37:25,357   24232 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-10T13:37:25,357         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-10T13:37:55,854   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:37:56,176   building 'moleculekit.distance_utils' extension
2023-10-10T13:37:56,177   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-10T13:37:56,178   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-10T13:37:56,411   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:37:56,411                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:37:56,411                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:37:56,411                    from moleculekit/distance_utils/distance_utils.cpp:1219:
2023-10-10T13:37:56,411   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:37:56,411      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:37:56,412         |  ^~~~~~~
2023-10-10T13:38:28,649   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:38:28,983   building 'moleculekit.occupancy_utils' extension
2023-10-10T13:38:28,984   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-10T13:38:28,985   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-10T13:38:29,221   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:38:29,222                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:38:29,222                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:38:29,222                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1219:
2023-10-10T13:38:29,222   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:38:29,222      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:38:29,222         |  ^~~~~~~
2023-10-10T13:38:52,254   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:38:52,471   building 'moleculekit.xtc' extension
2023-10-10T13:38:52,472   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-10T13:38:52,472   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-10T13:38:52,474   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-10T13:38:52,711   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,712      66 |  "OK",
2023-10-10T13:38:52,712         |  ^~~~
2023-10-10T13:38:52,712   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,712      67 |  "Header",
2023-10-10T13:38:52,712         |  ^~~~~~~~
2023-10-10T13:38:52,712   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,713      68 |  "String",
2023-10-10T13:38:52,713         |  ^~~~~~~~
2023-10-10T13:38:52,713   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,713      69 |  "Double",
2023-10-10T13:38:52,713         |  ^~~~~~~~
2023-10-10T13:38:52,713   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,713      70 |  "Integer",
2023-10-10T13:38:52,714         |  ^~~~~~~~~
2023-10-10T13:38:52,714   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,714      71 |  "Float",
2023-10-10T13:38:52,714         |  ^~~~~~~
2023-10-10T13:38:52,714   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,714      72 |  "Unsigned integer",
2023-10-10T13:38:52,714         |  ^~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,715   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,715      73 |  "Compressed 3D coordinate",
2023-10-10T13:38:52,715         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,715   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,715      74 |  "Closing file",
2023-10-10T13:38:52,715         |  ^~~~~~~~~~~~~~
2023-10-10T13:38:52,715   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,716      75 |  "Magic number",
2023-10-10T13:38:52,716         |  ^~~~~~~~~~~~~~
2023-10-10T13:38:52,716   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,716      76 |  "Not enough memory",
2023-10-10T13:38:52,716         |  ^~~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,716   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,716      77 |  "End of file",
2023-10-10T13:38:52,716         |  ^~~~~~~~~~~~~
2023-10-10T13:38:52,717   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-10T13:38:52,717      78 |  "File not found"
2023-10-10T13:38:52,717         |  ^~~~~~~~~~~~~~~~
2023-10-10T13:38:52,721   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-10T13:38:52,721   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,721     459 |     while (size >= num && num_of_bits < 32)
2023-10-10T13:38:52,721         |            ~~~~~^~~~~~
2023-10-10T13:38:52,722   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-10T13:38:52,722   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,722     505 |     while (bytes[num_of_bytes] >= num)
2023-10-10T13:38:52,722         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-10T13:38:52,724   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-10T13:38:52,724   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,724     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-10T13:38:52,725         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,725   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,725     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-10T13:38:52,725         |               ~~^~~~~~~~~~~~~~
2023-10-10T13:38:52,725   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,725     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-10T13:38:52,725         |               ~~^~~~~~~~~~~~~~~~
2023-10-10T13:38:52,726   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-10T13:38:52,726   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,726     664 |   if (lastbits < num_of_bits)
2023-10-10T13:38:52,726         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-10T13:38:52,729   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-10T13:38:52,729   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,730     785 |  if(size3>xfp->buf1size)
2023-10-10T13:38:52,730         |     ~~~~~^~~~~~~~~~~~~~
2023-10-10T13:38:52,731   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,731     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-10T13:38:52,731         |                   ^
2023-10-10T13:38:52,734   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,734     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,734         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,734   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,734     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,735         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,735   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,735     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,735         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,735   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,735     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,735         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,736   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,736     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,736         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,736   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,736     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-10T13:38:52,736         |        ~~~~~~~~~^~~~~~~~
2023-10-10T13:38:52,736   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,736     756 |  int smallidx,  minidx, maxidx;
2023-10-10T13:38:52,737         |                 ^~~~~~
2023-10-10T13:38:52,737   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,737     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-10T13:38:52,737         |                         ^~~~~~
2023-10-10T13:38:52,737   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-10T13:38:52,737     763 |  int errval=1;
2023-10-10T13:38:52,737         |      ^~~~~~
2023-10-10T13:38:52,738   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-10T13:38:52,738   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,738    1011 |  if(size3>xfp->buf1size)
2023-10-10T13:38:52,739         |     ~~~~~^~~~~~~~~~~~~~
2023-10-10T13:38:52,740   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,740    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-10T13:38:52,741         |                     ~~~~~~~~^~~~~~~
2023-10-10T13:38:52,741   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,741    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-10T13:38:52,741         |                    ~~~~~~~~^~~~~~~
2023-10-10T13:38:52,741   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,742    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-10T13:38:52,742         |                    ~~~~~~~~^~~~~~~
2023-10-10T13:38:52,743   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,743    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-10T13:38:52,743         |                  ^
2023-10-10T13:38:52,744   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,744    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-10T13:38:52,744         |                   ^
2023-10-10T13:38:52,747   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,748    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-10T13:38:52,748         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,748   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,748    1001 |  int errval;
2023-10-10T13:38:52,748         |      ^~~~~~
2023-10-10T13:38:52,750   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-10T13:38:52,751   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,751    1316 |  if(size3>xfp->buf1size)
2023-10-10T13:38:52,751         |     ~~~~~^~~~~~~~~~~~~~
2023-10-10T13:38:52,753   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,753    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-10T13:38:52,753         |                   ^
2023-10-10T13:38:52,755   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,756    1289 |  int smallidx,  maxidx, minidx;
2023-10-10T13:38:52,756         |                         ^~~~~~
2023-10-10T13:38:52,756   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,756    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-10T13:38:52,756         |                         ^~~~~~
2023-10-10T13:38:52,756   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-10T13:38:52,756    1297 |  int errval=1;
2023-10-10T13:38:52,757         |      ^~~~~~
2023-10-10T13:38:52,758   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-10T13:38:52,758   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,758    1513 |  if(size3>xfp->buf1size) {
2023-10-10T13:38:52,758         |     ~~~~~^~~~~~~~~~~~~~
2023-10-10T13:38:52,762   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,762    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-10T13:38:52,762         |                  ^
2023-10-10T13:38:52,763   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-10T13:38:52,763    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-10T13:38:52,763         |                   ^
2023-10-10T13:38:52,766   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-10T13:38:52,766    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-10T13:38:52,767         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-10T13:38:52,767   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-10T13:38:52,767    1504 |  int errval=1;
2023-10-10T13:38:52,767         |      ^~~~~~
2023-10-10T13:38:54,994   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-10T13:38:55,245   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-10T13:38:55,815   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-10T13:38:55,815   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-10T13:38:55,815     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-10T13:38:55,815         |      ^~~
2023-10-10T13:38:55,822   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-10T13:38:55,822   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-10T13:38:55,822     418 |  int nf3 = nframes * 3;
2023-10-10T13:38:55,822         |      ^~~
2023-10-10T13:38:55,826   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-10T13:38:55,827   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-10T13:38:55,827     491 |  int reading_index = 0;
2023-10-10T13:38:55,827         |      ^~~~~~~~~~~~~
2023-10-10T13:38:55,827   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-10T13:38:55,827     492 |  int writing_index = 0;
2023-10-10T13:38:55,827         |      ^~~~~~~~~~~~~
2023-10-10T13:38:56,585   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-10T13:38:56,822   In file included from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-10T13:38:56,822                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-10T13:38:56,823                    from /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-10T13:38:56,823                    from moleculekit/xtc_utils/xtc.cpp:1223:
2023-10-10T13:38:56,823   /tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-10T13:38:56,823      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-10T13:38:56,823         |  ^~~~~~~
2023-10-10T13:39:16,892   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:39:17,221   building 'moleculekit.tmalign' extension
2023-10-10T13:39:17,222   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-10T13:39:17,222   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-10T13:39:17,224   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-10T13:39:46,643   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-r1p2ph9q/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-10T13:40:05,094   In file included from /usr/include/c++/10/vector:72,
2023-10-10T13:40:05,094                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-10T13:40:05,095   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-10T13:40:05,095   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-10T13:40:05,095     426 |       vector<_Tp, _Alloc>::
2023-10-10T13:40:05,095         |       ^~~~~~~~~~~~~~~~~~~
2023-10-10T13:40:05,675   In file included from /usr/include/c++/10/vector:67,
2023-10-10T13:40:05,675                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-10T13:40:05,675   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-10T13:40:05,675   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-10T13:40:05,675    1198 |    _M_realloc_insert(end(), __x);
2023-10-10T13:40:05,676         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-10T13:40:05,676   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-10T13:40:05,676    1198 |    _M_realloc_insert(end(), __x);
2023-10-10T13:40:05,676         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-10T13:40:05,677   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-10T13:40:05,677    1198 |    _M_realloc_insert(end(), __x);
2023-10-10T13:40:05,677         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-10T13:40:08,075   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-10T13:40:08,528   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-10T13:40:08,528   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.1'
2023-10-10T13:40:08,528   installing to build/bdist.linux-armv7l/wheel
2023-10-10T13:40:08,528   running install
2023-10-10T13:40:08,553   running install_lib
2023-10-10T13:40:08,560   creating build/bdist.linux-armv7l
2023-10-10T13:40:08,560   creating build/bdist.linux-armv7l/wheel
2023-10-10T13:40:08,562   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,642   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-10T13:40:08,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-10T13:40:08,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-10T13:40:08,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,670   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-10T13:40:08,671   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-10T13:40:08,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-10T13:40:08,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-10T13:40:08,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-10T13:40:08,679   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-10T13:40:08,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-10T13:40:08,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-10T13:40:08,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-10T13:40:08,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-10T13:40:08,689   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-10T13:40:08,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-10T13:40:08,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-10T13:40:08,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-10T13:40:08,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-10T13:40:08,699   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-10T13:40:08,714   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-10T13:40:08,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-10T13:40:08,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-10T13:40:08,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-10T13:40:08,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-10T13:40:08,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,749   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-10T13:40:08,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-10T13:40:08,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-10T13:40:08,783   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,807   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-10T13:40:08,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-10T13:40:08,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-10T13:40:08,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,864   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-10T13:40:08,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-10T13:40:08,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-10T13:40:08,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,915   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-10T13:40:08,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-10T13:40:08,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-10T13:40:08,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-10T13:40:08,964   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-10T13:40:08,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-10T13:40:08,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-10T13:40:08,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:08,989   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-10T13:40:08,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-10T13:40:09,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-10T13:40:09,011   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-10T13:40:09,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-10T13:40:09,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-10T13:40:09,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-10T13:40:09,019   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-10T13:40:09,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-10T13:40:09,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-10T13:40:09,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-10T13:40:09,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-10T13:40:09,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,036   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-10T13:40:09,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-10T13:40:09,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-10T13:40:09,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,080   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-10T13:40:09,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-10T13:40:09,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-10T13:40:09,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-10T13:40:09,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,118   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-10T13:40:09,119   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-10T13:40:09,123   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,344   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-10T13:40:09,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-10T13:40:09,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-10T13:40:09,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-10T13:40:09,635   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-10T13:40:09,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-10T13:40:09,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,706   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-10T13:40:09,741   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-10T13:40:09,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-10T13:40:09,745   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-10T13:40:09,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-10T13:40:09,748   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-10T13:40:09,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-10T13:40:09,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-10T13:40:09,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-10T13:40:09,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,823   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-10T13:40:09,854   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-10T13:40:09,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-10T13:40:09,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-10T13:40:09,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,861   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-10T13:40:09,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-10T13:40:09,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-10T13:40:09,888   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-10T13:40:09,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-10T13:40:09,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-10T13:40:09,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-10T13:40:09,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-10T13:40:09,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-10T13:40:09,899   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-10T13:40:09,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-10T13:40:09,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-10T13:40:09,922   running install_egg_info
2023-10-10T13:40:09,928   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.1-py3.9.egg-info
2023-10-10T13:40:09,941   running install_scripts
2023-10-10T13:40:09,989   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.1.dist-info/WHEEL
2023-10-10T13:40:09,992   creating '/tmp/pip-wheel-fufe4037/.tmp-xvbw9ex0/moleculekit-1.8.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-10T13:40:09,995   adding 'moleculekit/__init__.py'
2023-10-10T13:40:09,997   adding 'moleculekit/_version.py'
2023-10-10T13:40:09,999   adding 'moleculekit/align.py'
2023-10-10T13:40:10,314   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:10,326   adding 'moleculekit/bondguesser.py'
2023-10-10T13:40:10,568   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:10,577   adding 'moleculekit/config.py'
2023-10-10T13:40:10,578   adding 'moleculekit/dihedral.py'
2023-10-10T13:40:10,580   adding 'moleculekit/distance.py'
2023-10-10T13:40:10,886   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:10,897   adding 'moleculekit/home.py'
2023-10-10T13:40:10,899   adding 'moleculekit/logging.ini'
2023-10-10T13:40:10,913   adding 'moleculekit/molecule.py'
2023-10-10T13:40:11,138   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:11,147   adding 'moleculekit/opm.py'
2023-10-10T13:40:11,150   adding 'moleculekit/periodictable.py'
2023-10-10T13:40:11,152   adding 'moleculekit/pymolgraphics.py'
2023-10-10T13:40:11,153   adding 'moleculekit/rcsb.py'
2023-10-10T13:40:11,155   adding 'moleculekit/rdkitintegration.py'
2023-10-10T13:40:11,167   adding 'moleculekit/readers.py'
2023-10-10T13:40:11,771   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:11,796   adding 'moleculekit/util.py'
2023-10-10T13:40:11,797   adding 'moleculekit/version.py'
2023-10-10T13:40:11,799   adding 'moleculekit/viewer.py'
2023-10-10T13:40:11,801   adding 'moleculekit/vmd_wrapper'
2023-10-10T13:40:11,803   adding 'moleculekit/vmdgraphics.py'
2023-10-10T13:40:11,805   adding 'moleculekit/vmdviewer.py'
2023-10-10T13:40:12,036   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:12,049   adding 'moleculekit/writers.py'
2023-10-10T13:40:12,315   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:12,325   adding 'moleculekit/atomselect/__init__.py'
2023-10-10T13:40:12,327   adding 'moleculekit/atomselect/analyze.py'
2023-10-10T13:40:12,330   adding 'moleculekit/atomselect/atomselect.py'
2023-10-10T13:40:12,332   adding 'moleculekit/atomselect/languageparser.py'
2023-10-10T13:40:12,437   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-10T13:40:12,448   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-10T13:40:12,540   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-10T13:40:12,549   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-10T13:40:12,649   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-10T13:40:12,659   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-10T13:40:12,661   adding 'moleculekit/interactions/__init__.py'
2023-10-10T13:40:12,947   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:13,215   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:13,226   adding 'moleculekit/interactions/interactions.py'
2023-10-10T13:40:13,506   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:13,794   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-10T13:40:13,895   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-10T13:40:13,904   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-10T13:40:13,996   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-10T13:40:14,005   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-10T13:40:14,097   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-10T13:40:14,107   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-10T13:40:14,198   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-10T13:40:14,208   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-10T13:40:14,295   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-10T13:40:14,303   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-10T13:40:14,305   adding 'moleculekit/pdbx/__init__.py'
2023-10-10T13:40:14,309   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-10T13:40:14,312   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-10T13:40:14,315   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-10T13:40:14,316   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-10T13:40:14,319   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-10T13:40:14,320   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-10T13:40:14,322   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-10T13:40:14,324   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-10T13:40:14,326   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-10T13:40:14,327   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-10T13:40:14,329   adding 'moleculekit/ply/__init__.py'
2023-10-10T13:40:14,334   adding 'moleculekit/ply/lex.py'
2023-10-10T13:40:14,346   adding 'moleculekit/ply/yacc.py'
2023-10-10T13:40:14,348   adding 'moleculekit/projections/__init__.py'
2023-10-10T13:40:14,351   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-10T13:40:14,354   adding 'moleculekit/projections/metricdihedral.py'
2023-10-10T13:40:14,359   adding 'moleculekit/projections/metricdistance.py'
2023-10-10T13:40:14,361   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-10T13:40:14,363   adding 'moleculekit/projections/metricgyration.py'
2023-10-10T13:40:14,367   adding 'moleculekit/projections/metricplumed2.py'
2023-10-10T13:40:14,369   adding 'moleculekit/projections/metricrmsd.py'
2023-10-10T13:40:14,371   adding 'moleculekit/projections/metricsasa.py'
2023-10-10T13:40:14,374   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-10T13:40:14,376   adding 'moleculekit/projections/metricshell.py'
2023-10-10T13:40:14,378   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-10T13:40:14,380   adding 'moleculekit/projections/metrictmscore.py'
2023-10-10T13:40:14,381   adding 'moleculekit/projections/projection.py'
2023-10-10T13:40:14,383   adding 'moleculekit/projections/util.py'
2023-10-10T13:40:14,385   adding 'moleculekit/share/ALA.cif'
2023-10-10T13:40:14,387   adding 'moleculekit/share/backbone.cif'
2023-10-10T13:40:15,695   adding 'moleculekit/share/opm_sequences.json'
2023-10-10T13:40:15,780   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-10T13:40:15,785   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-10T13:40:15,786   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-10T13:40:15,788   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-10T13:40:15,789   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-10T13:40:15,791   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-10T13:40:15,792   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-10T13:40:15,794   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-10T13:40:15,796   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-10T13:40:15,797   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-10T13:40:15,799   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-10T13:40:15,800   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-10T13:40:15,802   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-10T13:40:15,803   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-10T13:40:15,805   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-10T13:40:15,806   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-10T13:40:15,808   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-10T13:40:15,809   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-10T13:40:15,811   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-10T13:40:15,812   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-10T13:40:15,814   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-10T13:40:15,816   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-10T13:40:15,817   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-10T13:40:15,819   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-10T13:40:15,820   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-10T13:40:15,822   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-10T13:40:15,823   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-10T13:40:15,825   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-10T13:40:15,826   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-10T13:40:15,828   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-10T13:40:15,829   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-10T13:40:15,831   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-10T13:40:15,832   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-10T13:40:15,834   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-10T13:40:15,835   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-10T13:40:15,837   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-10T13:40:15,838   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-10T13:40:15,840   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-10T13:40:15,841   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-10T13:40:15,843   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-10T13:40:15,844   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-10T13:40:15,846   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-10T13:40:15,847   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-10T13:40:15,849   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-10T13:40:15,850   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-10T13:40:15,852   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-10T13:40:15,853   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-10T13:40:15,855   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-10T13:40:15,856   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-10T13:40:15,858   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-10T13:40:15,860   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-10T13:40:15,861   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-10T13:40:15,863   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-10T13:40:15,864   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-10T13:40:15,865   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-10T13:40:15,867   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-10T13:40:15,868   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-10T13:40:15,870   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-10T13:40:15,871   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-10T13:40:15,873   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-10T13:40:15,874   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-10T13:40:15,876   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-10T13:40:15,877   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-10T13:40:15,879   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-10T13:40:15,880   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-10T13:40:15,882   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-10T13:40:15,883   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-10T13:40:15,885   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-10T13:40:15,886   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-10T13:40:15,888   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-10T13:40:15,889   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-10T13:40:15,891   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-10T13:40:15,892   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-10T13:40:15,894   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-10T13:40:15,895   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-10T13:40:15,897   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-10T13:40:15,898   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-10T13:40:15,900   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-10T13:40:15,901   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-10T13:40:15,903   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-10T13:40:15,904   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-10T13:40:15,906   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-10T13:40:15,907   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-10T13:40:15,909   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-10T13:40:15,910   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-10T13:40:15,912   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-10T13:40:15,913   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-10T13:40:15,915   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-10T13:40:15,916   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-10T13:40:15,918   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-10T13:40:15,919   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-10T13:40:15,921   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-10T13:40:15,922   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-10T13:40:15,924   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-10T13:40:15,925   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-10T13:40:15,927   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-10T13:40:15,928   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-10T13:40:15,930   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-10T13:40:15,931   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-10T13:40:15,933   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-10T13:40:15,934   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-10T13:40:15,936   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-10T13:40:15,937   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-10T13:40:15,939   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-10T13:40:15,940   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-10T13:40:15,942   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-10T13:40:15,943   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-10T13:40:15,945   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-10T13:40:15,946   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-10T13:40:15,948   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-10T13:40:15,949   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-10T13:40:15,950   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-10T13:40:15,952   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-10T13:40:15,953   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-10T13:40:15,955   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-10T13:40:15,957   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-10T13:40:15,958   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-10T13:40:15,960   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-10T13:40:15,961   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-10T13:40:15,963   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-10T13:40:15,964   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-10T13:40:15,966   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-10T13:40:15,967   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-10T13:40:15,968   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-10T13:40:15,970   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-10T13:40:15,973   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-10T13:40:15,975   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-10T13:40:15,976   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-10T13:40:15,978   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-10T13:40:15,979   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-10T13:40:15,981   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-10T13:40:15,982   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-10T13:40:15,984   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-10T13:40:15,986   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-10T13:40:15,987   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-10T13:40:15,988   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-10T13:40:15,990   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-10T13:40:15,992   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-10T13:40:15,993   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-10T13:40:15,995   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-10T13:40:15,996   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-10T13:40:15,998   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-10T13:40:15,999   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-10T13:40:16,000   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-10T13:40:16,002   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-10T13:40:16,003   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-10T13:40:16,005   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-10T13:40:16,007   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-10T13:40:16,008   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-10T13:40:16,010   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-10T13:40:16,011   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-10T13:40:16,013   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-10T13:40:16,014   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-10T13:40:16,016   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-10T13:40:16,017   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-10T13:40:16,019   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-10T13:40:16,021   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-10T13:40:16,022   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-10T13:40:16,024   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-10T13:40:16,025   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-10T13:40:16,027   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-10T13:40:16,028   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-10T13:40:16,030   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-10T13:40:16,031   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-10T13:40:16,033   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-10T13:40:16,034   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-10T13:40:16,036   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-10T13:40:16,037   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-10T13:40:16,039   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-10T13:40:16,040   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-10T13:40:16,042   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-10T13:40:16,043   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-10T13:40:16,045   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-10T13:40:16,046   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-10T13:40:16,047   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-10T13:40:16,049   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-10T13:40:16,051   adding 'moleculekit/smallmol/__init__.py'
2023-10-10T13:40:16,057   adding 'moleculekit/smallmol/smallmol.py'
2023-10-10T13:40:16,060   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-10T13:40:16,062   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-10T13:40:16,064   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-10T13:40:16,066   adding 'moleculekit/smallmol/util.py'
2023-10-10T13:40:16,068   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-10T13:40:16,071   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-10T13:40:16,072   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-10T13:40:16,074   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-10T13:40:16,164   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-10T13:40:16,173   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-10T13:40:16,175   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-10T13:40:16,177   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-10T13:40:16,195   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-10T13:40:16,198   adding 'moleculekit/tools/__init__.py'
2023-10-10T13:40:16,201   adding 'moleculekit/tools/atomtyper.py'
2023-10-10T13:40:16,203   adding 'moleculekit/tools/autosegment.py'
2023-10-10T13:40:16,206   adding 'moleculekit/tools/crystalpacking.py'
2023-10-10T13:40:16,209   adding 'moleculekit/tools/detect.py'
2023-10-10T13:40:16,212   adding 'moleculekit/tools/docking.py'
2023-10-10T13:40:16,214   adding 'moleculekit/tools/graphalignment.py'
2023-10-10T13:40:16,216   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-10T13:40:16,218   adding 'moleculekit/tools/moleculechecks.py'
2023-10-10T13:40:16,224   adding 'moleculekit/tools/preparation.py'
2023-10-10T13:40:16,227   adding 'moleculekit/tools/preparation_customres.py'
2023-10-10T13:40:16,229   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-10T13:40:16,232   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-10T13:40:16,235   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-10T13:40:16,236   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-10T13:40:16,325   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-10T13:40:16,334   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-10T13:40:16,423   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-10T13:40:16,432   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-10T13:40:16,434   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-10T13:40:16,437   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-10T13:40:16,439   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-10T13:40:16,441   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-10T13:40:16,448   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-10T13:40:16,450   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-10T13:40:16,452   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-10T13:40:16,455   adding 'moleculekit-1.8.1.dist-info/LICENSE'
2023-10-10T13:40:16,457   adding 'moleculekit-1.8.1.dist-info/METADATA'
2023-10-10T13:40:16,458   adding 'moleculekit-1.8.1.dist-info/WHEEL'
2023-10-10T13:40:16,459   adding 'moleculekit-1.8.1.dist-info/top_level.txt'
2023-10-10T13:40:16,464   adding 'moleculekit-1.8.1.dist-info/RECORD'
2023-10-10T13:40:16,610   removing build/bdist.linux-armv7l/wheel
2023-10-10T13:40:16,880   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-10T13:40:17,137   Created wheel for moleculekit: filename=moleculekit-1.8.1-cp39-cp39-linux_armv7l.whl size=12561375 sha256=882448e06a6a7d2e759b4deddacf334c2847f442389606bab13625b48b7bfdca
2023-10-10T13:40:17,138   Stored in directory: /tmp/pip-ephem-wheel-cache-_jx46sna/wheels/f6/e9/cc/7f13ed8d1694750d4045ca2c70c308d6cf01b4f074935f0ca1
2023-10-10T13:40:17,163 Successfully built moleculekit
2023-10-10T13:40:17,474 Removed build tracker: '/tmp/pip-build-tracker-h_v7k_of'