2023-10-10T17:23:43,915 Created temporary directory: /tmp/pip-build-tracker-xk8fu1er
2023-10-10T17:23:43,916 Initialized build tracking at /tmp/pip-build-tracker-xk8fu1er
2023-10-10T17:23:43,917 Created build tracker: /tmp/pip-build-tracker-xk8fu1er
2023-10-10T17:23:43,917 Entered build tracker: /tmp/pip-build-tracker-xk8fu1er
2023-10-10T17:23:43,918 Created temporary directory: /tmp/pip-wheel-eordak4t
2023-10-10T17:23:43,921 Created temporary directory: /tmp/pip-ephem-wheel-cache-30qeh45t
2023-10-10T17:23:43,944 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-10T17:23:43,948 2 location(s) to search for versions of capcruncher:
2023-10-10T17:23:43,948 * https://pypi.org/simple/capcruncher/
2023-10-10T17:23:43,948 * https://www.piwheels.org/simple/capcruncher/
2023-10-10T17:23:43,949 Fetching project page and analyzing links: https://pypi.org/simple/capcruncher/
2023-10-10T17:23:43,950 Getting page https://pypi.org/simple/capcruncher/
2023-10-10T17:23:43,952 Found index url https://pypi.org/simple/
2023-10-10T17:23:44,172 Fetched page https://pypi.org/simple/capcruncher/ as application/vnd.pypi.simple.v1+json
2023-10-10T17:23:44,178   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/34/0a/9e75866768f2f383fb94a19406fc1351c2752e365607839d6e2bb1d8d84b/capcruncher-0.1.0a1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,179   Found link https://files.pythonhosted.org/packages/3c/f1/f89b867eec66701b2f41487ec19a3092f869cba76c6d15750220af30ab7b/capcruncher-0.1.0a1.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.1.0a1
2023-10-10T17:23:44,180   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/1d/1b/b3083fd403c5ea09c7ac18edb1a69b795ab753e1dce96d3837c6777c090a/capcruncher-0.1.0a2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,180   Found link https://files.pythonhosted.org/packages/78/43/1dbd9816f26f28c8ea8e41109f7b55f3c29216ae9ee9faf3132455ee5900/capcruncher-0.1.0a2.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.1.0a2
2023-10-10T17:23:44,181   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/af/21/1bd19a95d650d782bd61f0617e2ade19b8ea9dfc2583d5188cf31fc9e2ac/capcruncher-0.1.1a0-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-10-10T17:23:44,182   Found link https://files.pythonhosted.org/packages/4b/58/8c4c26cb67c97bc632d4fd7df6b754a3d7d52d9224a12b5ef30f1551e18a/capcruncher-0.1.1a0.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.1.1a0
2023-10-10T17:23:44,183   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/09/3a/0d4e2559f5fcd1ea08ba4a59a2174bfa9b4e362fb6fbbeff57652bc8b43b/capcruncher-0.1.1a1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-10-10T17:23:44,183   Found link https://files.pythonhosted.org/packages/fc/38/d9f3fbb589780a7116c60af23e14e0ffec82fa966bd6fac06494df1ff972/capcruncher-0.1.1a1.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.1.1a1
2023-10-10T17:23:44,184   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/d8/b8/f378ab302aba8e011a3548bc8e12ca018dd51bae5e175f2aeac9b7023dbe/capcruncher-0.2.0-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-10-10T17:23:44,185   Found link https://files.pythonhosted.org/packages/ab/85/07383d62359c33bab143b6f85173a09852963625a5c6e23bbfd5c54d81d4/capcruncher-0.2.0.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.2.0
2023-10-10T17:23:44,185   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/20/fb/21512e9e9259664564498669e39be1c06854d7b9a4b2c088d640dbaed48b/capcruncher-0.2.2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/)
2023-10-10T17:23:44,186   Found link https://files.pythonhosted.org/packages/d6/8a/d499689bfadfc8c5ad88d9403619ffd62fe9169a359c304a3ef25d368b1d/capcruncher-0.2.2.tar.gz (from https://pypi.org/simple/capcruncher/), version: 0.2.2
2023-10-10T17:23:44,187   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/37/32/8d0b33d160aeec619f8cc86611ac7771733f9a300176f3b7fbc5f94dc51a/capcruncher-0.2.3-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,188   Found link https://files.pythonhosted.org/packages/e7/da/78b7ae1ccdca4a9c2a0abdd16e308facc1909da2e159ce2d565c05fad639/capcruncher-0.2.3.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.8), version: 0.2.3
2023-10-10T17:23:44,189   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/26/e5/2b7ada507bb60d04dfafa0655d63edd3b82cdfb5476b8672acf0cb5477b9/capcruncher-0.3.1-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,189   Found link https://files.pythonhosted.org/packages/43/bd/2aabc1f9b8e2fae522852b4f3c8f27f42aadcf50016eb7bfcdfe83d499bb/capcruncher-0.3.1.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.1
2023-10-10T17:23:44,190   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/23/34/26f733de022f420176a15aaccb50dc49d6eac08dcf68d147f08d3abb257b/capcruncher-0.3.2-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,191   Found link https://files.pythonhosted.org/packages/b4/c4/a3c7065d7c993db2680c1303d40862031cc6e8535aca5b023ded383d4520/capcruncher-0.3.2.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.2
2023-10-10T17:23:44,191   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/80/d5/ae6f38bc4ec0724841406c0125296bad843a1ca2fe9e2dfce8bb73796ae5/capcruncher-0.3.3-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,192   Found link https://files.pythonhosted.org/packages/21/8f/8063b68decdfed76375774899994ce09bf6f2362453110d3a7e3091d0f47/capcruncher-0.3.3.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.3
2023-10-10T17:23:44,193   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/61/55/adac692b940cca0f453b760ec8c3be9b325e22afb8e8693717fcebd202c0/capcruncher-0.3.4-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,194   Found link https://files.pythonhosted.org/packages/b1/78/c98a2a4a6e62b5bd169af128129633b9e06bce32b0284b79c68808a8f0e5/capcruncher-0.3.4.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.4
2023-10-10T17:23:44,195   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/a7/b0/ed93710d654d62b661c227e5ab7cd4318633571b06cf746789710ca33465/capcruncher-0.3.5-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,196   Found link https://files.pythonhosted.org/packages/37/ea/966e9f14e18737107ed291ea6d3646f5a05e13a9566c2e70e0a7cd9ed172/capcruncher-0.3.5.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.5
2023-10-10T17:23:44,196   Skipping link: No binaries permitted for capcruncher: https://files.pythonhosted.org/packages/cc/da/a6eecab0a59ddc8666c9f015c4d7cd9314c786bcb2e0b0b8f13df74f9539/capcruncher-0.3.6-py3-none-any.whl (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,197   Found link https://files.pythonhosted.org/packages/8d/25/4ea99311a7e678a3d924cf4611164187869f203b08e6b6d528ab1109dfbf/capcruncher-0.3.6.tar.gz (from https://pypi.org/simple/capcruncher/) (requires-python:>=3.10), version: 0.3.6
2023-10-10T17:23:44,198 Fetching project page and analyzing links: https://www.piwheels.org/simple/capcruncher/
2023-10-10T17:23:44,199 Getting page https://www.piwheels.org/simple/capcruncher/
2023-10-10T17:23:44,200 Found index url https://www.piwheels.org/simple/
2023-10-10T17:23:44,357 Fetched page https://www.piwheels.org/simple/capcruncher/ as text/html
2023-10-10T17:23:44,362   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.5-py3-none-any.whl#sha256=503c6a297520994543673dade8d1f543945f4696ee680a184d3f998ca2896c5b (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,362   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.4-py3-none-any.whl#sha256=1f430b5ce16f4b15f8b8c7eae415267929912ca0a78616fde3f593f9d458918e (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,363   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.3-py3-none-any.whl#sha256=a622eec10ed86905ffdc0d9696093c93ede9ae0280eb0979727ed05b78c6aeed (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,363   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.2-py3-none-any.whl#sha256=cb9bbb6e602e5e11dcbac280be5520518f0110c58eb9bc7937644b956c455a02 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,364   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.3.1-py3-none-any.whl#sha256=010cc17949484bec95ba588bf89f30d450d6476b8e7c612e14f32270db999b52 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.10)
2023-10-10T17:23:44,364   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.3-py3-none-any.whl#sha256=3640a41566ec698430601c7ee8ff373d698ad995981fcb1564072cbdaadeaa70 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,365   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.2-py3-none-any.whl#sha256=696271de6a0cfb479ebe5c059b46015c0b54a4883b28fac6d3f60d3f10360694 (from https://www.piwheels.org/simple/capcruncher/)
2023-10-10T17:23:44,365   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.2.0-py3-none-any.whl#sha256=a376e09af30f629484777d94d245a0a18cdee37e332344294623f74a218de161 (from https://www.piwheels.org/simple/capcruncher/)
2023-10-10T17:23:44,366   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.1a1-py3-none-any.whl#sha256=45ad47d1025882de7d3ae2436f95d9c690fb55f4ad3320a464754782dd2a9ce8 (from https://www.piwheels.org/simple/capcruncher/)
2023-10-10T17:23:44,366   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.1a0-py3-none-any.whl#sha256=33582eed6498ac35fff342bc97adfeec48d012dca74e99a13b6c8ed596465d0d (from https://www.piwheels.org/simple/capcruncher/)
2023-10-10T17:23:44,367   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.0a2-py3-none-any.whl#sha256=a9cad04a0fa53e9864f02ac8641b704ba78bd0da1a8d83c5e84199e7ae183222 (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,367   Skipping link: No binaries permitted for capcruncher: https://www.piwheels.org/simple/capcruncher/capcruncher-0.1.0a1-py3-none-any.whl#sha256=8d0852e344db844525d67d074e33a0880f102073b0bdc5d77c2c3bd498ffee5b (from https://www.piwheels.org/simple/capcruncher/) (requires-python:>=3.8)
2023-10-10T17:23:44,368 Skipping link: not a file: https://www.piwheels.org/simple/capcruncher/
2023-10-10T17:23:44,369 Skipping link: not a file: https://pypi.org/simple/capcruncher/
2023-10-10T17:23:44,388 Given no hashes to check 1 links for project 'capcruncher': discarding no candidates
2023-10-10T17:23:44,406 Collecting capcruncher==0.3.6
2023-10-10T17:23:44,409   Created temporary directory: /tmp/pip-unpack-xp_mhlc6
2023-10-10T17:23:44,631   Downloading capcruncher-0.3.6.tar.gz (84.8 MB)
2023-10-10T17:24:01,241   Added capcruncher==0.3.6 from https://files.pythonhosted.org/packages/8d/25/4ea99311a7e678a3d924cf4611164187869f203b08e6b6d528ab1109dfbf/capcruncher-0.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-xk8fu1er'
2023-10-10T17:24:01,248   Created temporary directory: /tmp/pip-build-env-mpe3kds9
2023-10-10T17:24:01,253   Installing build dependencies: started
2023-10-10T17:24:01,255   Running command pip subprocess to install build dependencies
2023-10-10T17:24:02,396   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-10T17:24:02,898   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-10T17:24:04,447   Collecting setuptools>=61.0
2023-10-10T17:24:04,508     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-10T17:24:04,741   Collecting wheel
2023-10-10T17:24:04,760     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-10T17:24:05,055   Collecting setuptools_scm[toml]>=6.2
2023-10-10T17:24:05,070     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
2023-10-10T17:24:05,420   Collecting packaging>=20 (from setuptools_scm[toml]>=6.2)
2023-10-10T17:24:05,436     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2023-10-10T17:24:05,555   Collecting typing-extensions (from setuptools_scm[toml]>=6.2)
2023-10-10T17:24:05,570     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.8.0-py3-none-any.whl (31 kB)
2023-10-10T17:24:08,113   Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm
2023-10-10T17:24:08,335     Creating /tmp/pip-build-env-mpe3kds9/overlay/local/bin
2023-10-10T17:24:08,337     changing mode of /tmp/pip-build-env-mpe3kds9/overlay/local/bin/wheel to 755
2023-10-10T17:24:10,963   Successfully installed packaging-23.2 setuptools-68.2.2 setuptools_scm-8.0.4 typing-extensions-4.8.0 wheel-0.41.2
2023-10-10T17:24:11,506   Installing build dependencies: finished with status 'done'
2023-10-10T17:24:11,510   Getting requirements to build wheel: started
2023-10-10T17:24:11,511   Running command Getting requirements to build wheel
2023-10-10T17:24:12,422   running egg_info
2023-10-10T17:24:12,427   writing capcruncher.egg-info/PKG-INFO
2023-10-10T17:24:12,434   writing dependency_links to capcruncher.egg-info/dependency_links.txt
2023-10-10T17:24:12,436   writing entry points to capcruncher.egg-info/entry_points.txt
2023-10-10T17:24:12,439   writing requirements to capcruncher.egg-info/requires.txt
2023-10-10T17:24:12,440   writing top-level names to capcruncher.egg-info/top_level.txt
2023-10-10T17:24:12,487   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-10-10T17:24:12,491   reading manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:12,499   reading manifest template 'MANIFEST.in'
2023-10-10T17:24:12,529   adding license file 'LICENSE'
2023-10-10T17:24:12,537   writing manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:12,661   Getting requirements to build wheel: finished with status 'done'
2023-10-10T17:24:12,677   Created temporary directory: /tmp/pip-modern-metadata-52bba00a
2023-10-10T17:24:12,680   Preparing metadata (pyproject.toml): started
2023-10-10T17:24:12,681   Running command Preparing metadata (pyproject.toml)
2023-10-10T17:24:13,529   running dist_info
2023-10-10T17:24:13,535   creating /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info
2023-10-10T17:24:13,540   writing /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/PKG-INFO
2023-10-10T17:24:13,547   writing dependency_links to /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/dependency_links.txt
2023-10-10T17:24:13,549   writing entry points to /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/entry_points.txt
2023-10-10T17:24:13,551   writing requirements to /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/requires.txt
2023-10-10T17:24:13,552   writing top-level names to /tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/top_level.txt
2023-10-10T17:24:13,554   writing manifest file '/tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:13,595   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-10-10T17:24:13,598   reading manifest file '/tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:13,600   reading manifest template 'MANIFEST.in'
2023-10-10T17:24:13,629   adding license file 'LICENSE'
2023-10-10T17:24:13,633   writing manifest file '/tmp/pip-modern-metadata-52bba00a/capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:13,634   creating '/tmp/pip-modern-metadata-52bba00a/capcruncher-0.3.6.dist-info'
2023-10-10T17:24:13,803   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-10T17:24:13,814   Source in /tmp/pip-wheel-eordak4t/capcruncher_0207ecc33ee84e5a8583b43f7acf983e has version 0.3.6, which satisfies requirement capcruncher==0.3.6 from https://files.pythonhosted.org/packages/8d/25/4ea99311a7e678a3d924cf4611164187869f203b08e6b6d528ab1109dfbf/capcruncher-0.3.6.tar.gz
2023-10-10T17:24:13,815   Removed capcruncher==0.3.6 from https://files.pythonhosted.org/packages/8d/25/4ea99311a7e678a3d924cf4611164187869f203b08e6b6d528ab1109dfbf/capcruncher-0.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-xk8fu1er'
2023-10-10T17:24:13,834 Created temporary directory: /tmp/pip-unpack-vgndem00
2023-10-10T17:24:13,835 Created temporary directory: /tmp/pip-unpack-gj3wc9d5
2023-10-10T17:24:13,886 Building wheels for collected packages: capcruncher
2023-10-10T17:24:13,890   Created temporary directory: /tmp/pip-wheel-mvt6rqvb
2023-10-10T17:24:13,891   Destination directory: /tmp/pip-wheel-mvt6rqvb
2023-10-10T17:24:13,893   Building wheel for capcruncher (pyproject.toml): started
2023-10-10T17:24:13,894   Running command Building wheel for capcruncher (pyproject.toml)
2023-10-10T17:24:14,713   running bdist_wheel
2023-10-10T17:24:14,736   running build
2023-10-10T17:24:14,736   running build_py
2023-10-10T17:24:14,742   creating build
2023-10-10T17:24:14,743   creating build/lib
2023-10-10T17:24:14,743   creating build/lib/capcruncher
2023-10-10T17:24:14,744   copying capcruncher/__init__.py -> build/lib/capcruncher
2023-10-10T17:24:14,746   copying capcruncher/utils.py -> build/lib/capcruncher
2023-10-10T17:24:14,749   copying capcruncher/_version.py -> build/lib/capcruncher
2023-10-10T17:24:14,751   creating build/lib/capcruncher/cli
2023-10-10T17:24:14,752   copying capcruncher/cli/__init__.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,754   copying capcruncher/cli/cli_genome.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,756   copying capcruncher/cli/interactions_compare.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,758   copying capcruncher/cli/genome_digest.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,760   copying capcruncher/cli/interactions_count.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,762   copying capcruncher/cli/cli_interactions.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,764   copying capcruncher/cli/cli_plot.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,766   copying capcruncher/cli/alignments_annotate.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,768   copying capcruncher/cli/cli_pipeline.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,770   copying capcruncher/cli/plot.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,771   copying capcruncher/cli/cli_alignments.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,774   copying capcruncher/cli/cli_fastq.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,776   copying capcruncher/cli/interactions_pileup.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,778   copying capcruncher/cli/fastq_split.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,780   copying capcruncher/cli/fastq_digest.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,781   copying capcruncher/cli/cli_utilities.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,783   copying capcruncher/cli/fastq_deduplicate.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,785   copying capcruncher/cli/interactions_deduplicate.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,787   copying capcruncher/cli/alignments_filter.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,789   copying capcruncher/cli/interactions_store.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,791   copying capcruncher/cli/interactions_differential.py -> build/lib/capcruncher/cli
2023-10-10T17:24:14,793   creating build/lib/capcruncher/pipeline
2023-10-10T17:24:14,794   copying capcruncher/pipeline/utils.py -> build/lib/capcruncher/pipeline
2023-10-10T17:24:14,797   creating build/lib/capcruncher/api
2023-10-10T17:24:14,798   copying capcruncher/api/__init__.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,799   copying capcruncher/api/statistics.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,801   copying capcruncher/api/pileup.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,803   copying capcruncher/api/annotate.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,805   copying capcruncher/api/storage.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,807   copying capcruncher/api/plotting.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,810   copying capcruncher/api/io.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,814   copying capcruncher/api/filter.py -> build/lib/capcruncher/api
2023-10-10T17:24:14,819   creating build/lib/capcruncher/pipeline/workflow
2023-10-10T17:24:14,819   creating build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,820   copying capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,822   copying capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,824   copying capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,826   copying capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,827   copying capcruncher/pipeline/workflow/scripts/plot.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,829   copying capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,830   copying capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,832   copying capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,834   copying capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,836   copying capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,837   copying capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,839   copying capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,841   copying capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py -> build/lib/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:14,844   creating build/lib/capcruncher/pipeline/workflow/report
2023-10-10T17:24:14,844   copying capcruncher/pipeline/workflow/report/make_report.py -> build/lib/capcruncher/pipeline/workflow/report
2023-10-10T17:24:14,848   running egg_info
2023-10-10T17:24:14,853   writing capcruncher.egg-info/PKG-INFO
2023-10-10T17:24:14,859   writing dependency_links to capcruncher.egg-info/dependency_links.txt
2023-10-10T17:24:14,860   writing entry points to capcruncher.egg-info/entry_points.txt
2023-10-10T17:24:14,863   writing requirements to capcruncher.egg-info/requires.txt
2023-10-10T17:24:14,864   writing top-level names to capcruncher.egg-info/top_level.txt
2023-10-10T17:24:14,894   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-10-10T17:24:14,897   reading manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:14,903   reading manifest template 'MANIFEST.in'
2023-10-10T17:24:14,939   adding license file 'LICENSE'
2023-10-10T17:24:14,947   writing manifest file 'capcruncher.egg-info/SOURCES.txt'
2023-10-10T17:24:14,955   creating build/lib/capcruncher/data
2023-10-10T17:24:14,956   copying capcruncher/data/logo.txt -> build/lib/capcruncher/data
2023-10-10T17:24:14,958   copying capcruncher/pipeline/workflow/Snakefile -> build/lib/capcruncher/pipeline/workflow
2023-10-10T17:24:14,961   creating build/lib/capcruncher/pipeline/config
2023-10-10T17:24:14,962   copying capcruncher/pipeline/config/cookiecutter.json -> build/lib/capcruncher/pipeline/config
2023-10-10T17:24:14,964   creating build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-10-10T17:24:14,965   copying capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml -> build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-10-10T17:24:14,968   creating build/lib/capcruncher/pipeline/workflow/data
2023-10-10T17:24:14,969   copying capcruncher/pipeline/workflow/data/annotation_defaults.json -> build/lib/capcruncher/pipeline/workflow/data
2023-10-10T17:24:14,972   creating build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,974   copying capcruncher/pipeline/workflow/rules/align.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,979   copying capcruncher/pipeline/workflow/rules/annotate.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,981   copying capcruncher/pipeline/workflow/rules/compare.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,984   copying capcruncher/pipeline/workflow/rules/digest.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,986   copying capcruncher/pipeline/workflow/rules/fastq.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,988   copying capcruncher/pipeline/workflow/rules/filter.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,991   copying capcruncher/pipeline/workflow/rules/pileup.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,993   copying capcruncher/pipeline/workflow/rules/qc.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,995   copying capcruncher/pipeline/workflow/rules/statistics.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:14,998   copying capcruncher/pipeline/workflow/rules/visualise.smk -> build/lib/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,000   creating build/lib/capcruncher/pipeline/workflow/envs
2023-10-10T17:24:15,001   copying capcruncher/pipeline/workflow/envs/environment.yml -> build/lib/capcruncher/pipeline/workflow/envs
2023-10-10T17:24:15,003   copying capcruncher/pipeline/workflow/report/capcruncher_report.qmd -> build/lib/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,007   copying capcruncher/pipeline/workflow/report/report_text.yml -> build/lib/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,009   creating build/lib/capcruncher/pipeline/workflow/envs/profiles
2023-10-10T17:24:15,010   creating build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-10-10T17:24:15,011   copying capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml -> build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-10-10T17:24:15,013   creating build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-10-10T17:24:15,014   copying capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml -> build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-10-10T17:24:15,030   installing to build/bdist.linux-armv7l/wheel
2023-10-10T17:24:15,031   running install
2023-10-10T17:24:15,055   running install_lib
2023-10-10T17:24:15,060   creating build/bdist.linux-armv7l
2023-10-10T17:24:15,061   creating build/bdist.linux-armv7l/wheel
2023-10-10T17:24:15,062   creating build/bdist.linux-armv7l/wheel/capcruncher
2023-10-10T17:24:15,064   creating build/bdist.linux-armv7l/wheel/capcruncher/data
2023-10-10T17:24:15,065   copying build/lib/capcruncher/data/logo.txt -> build/bdist.linux-armv7l/wheel/capcruncher/data
2023-10-10T17:24:15,066   copying build/lib/capcruncher/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-10-10T17:24:15,068   creating build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,069   copying build/lib/capcruncher/cli/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,071   copying build/lib/capcruncher/cli/cli_genome.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,073   copying build/lib/capcruncher/cli/interactions_compare.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,075   copying build/lib/capcruncher/cli/genome_digest.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,077   copying build/lib/capcruncher/cli/interactions_count.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,078   copying build/lib/capcruncher/cli/cli_interactions.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,080   copying build/lib/capcruncher/cli/cli_plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,082   copying build/lib/capcruncher/cli/alignments_annotate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,084   copying build/lib/capcruncher/cli/cli_pipeline.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,086   copying build/lib/capcruncher/cli/plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,088   copying build/lib/capcruncher/cli/cli_alignments.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,090   copying build/lib/capcruncher/cli/cli_fastq.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,092   copying build/lib/capcruncher/cli/interactions_pileup.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,094   copying build/lib/capcruncher/cli/fastq_split.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,097   copying build/lib/capcruncher/cli/fastq_digest.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,098   copying build/lib/capcruncher/cli/cli_utilities.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,101   copying build/lib/capcruncher/cli/fastq_deduplicate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,103   copying build/lib/capcruncher/cli/interactions_deduplicate.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,104   copying build/lib/capcruncher/cli/alignments_filter.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,106   copying build/lib/capcruncher/cli/interactions_store.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,109   copying build/lib/capcruncher/cli/interactions_differential.py -> build/bdist.linux-armv7l/wheel/capcruncher/cli
2023-10-10T17:24:15,111   copying build/lib/capcruncher/utils.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-10-10T17:24:15,114   copying build/lib/capcruncher/_version.py -> build/bdist.linux-armv7l/wheel/capcruncher
2023-10-10T17:24:15,116   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline
2023-10-10T17:24:15,117   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow
2023-10-10T17:24:15,118   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/data
2023-10-10T17:24:15,119   copying build/lib/capcruncher/pipeline/workflow/data/annotation_defaults.json -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/data
2023-10-10T17:24:15,121   copying build/lib/capcruncher/pipeline/workflow/Snakefile -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow
2023-10-10T17:24:15,123   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,124   copying build/lib/capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,125   copying build/lib/capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,127   copying build/lib/capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,129   copying build/lib/capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,130   copying build/lib/capcruncher/pipeline/workflow/scripts/plot.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,132   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,134   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,136   copying build/lib/capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,137   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,139   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,141   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,142   copying build/lib/capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,144   copying build/lib/capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/scripts
2023-10-10T17:24:15,146   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,147   copying build/lib/capcruncher/pipeline/workflow/rules/pileup.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,150   copying build/lib/capcruncher/pipeline/workflow/rules/filter.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,152   copying build/lib/capcruncher/pipeline/workflow/rules/visualise.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,154   copying build/lib/capcruncher/pipeline/workflow/rules/annotate.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,156   copying build/lib/capcruncher/pipeline/workflow/rules/statistics.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,158   copying build/lib/capcruncher/pipeline/workflow/rules/digest.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,160   copying build/lib/capcruncher/pipeline/workflow/rules/compare.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,162   copying build/lib/capcruncher/pipeline/workflow/rules/align.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,163   copying build/lib/capcruncher/pipeline/workflow/rules/fastq.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,165   copying build/lib/capcruncher/pipeline/workflow/rules/qc.smk -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/rules
2023-10-10T17:24:15,168   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs
2023-10-10T17:24:15,169   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles
2023-10-10T17:24:15,170   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-10-10T17:24:15,171   copying build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_singularity
2023-10-10T17:24:15,173   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-10-10T17:24:15,174   copying build/lib/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity
2023-10-10T17:24:15,176   copying build/lib/capcruncher/pipeline/workflow/envs/environment.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/envs
2023-10-10T17:24:15,178   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,179   copying build/lib/capcruncher/pipeline/workflow/report/capcruncher_report.qmd -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,181   copying build/lib/capcruncher/pipeline/workflow/report/report_text.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,183   copying build/lib/capcruncher/pipeline/workflow/report/make_report.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/workflow/report
2023-10-10T17:24:15,186   copying build/lib/capcruncher/pipeline/utils.py -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline
2023-10-10T17:24:15,188   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config
2023-10-10T17:24:15,190   creating build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-10-10T17:24:15,191   copying build/lib/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}
2023-10-10T17:24:15,193   copying build/lib/capcruncher/pipeline/config/cookiecutter.json -> build/bdist.linux-armv7l/wheel/capcruncher/pipeline/config
2023-10-10T17:24:15,195   creating build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,196   copying build/lib/capcruncher/api/__init__.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,198   copying build/lib/capcruncher/api/statistics.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,200   copying build/lib/capcruncher/api/pileup.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,202   copying build/lib/capcruncher/api/annotate.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,204   copying build/lib/capcruncher/api/storage.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,206   copying build/lib/capcruncher/api/plotting.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,209   copying build/lib/capcruncher/api/io.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,211   copying build/lib/capcruncher/api/filter.py -> build/bdist.linux-armv7l/wheel/capcruncher/api
2023-10-10T17:24:15,213   running install_egg_info
2023-10-10T17:24:15,218   Copying capcruncher.egg-info to build/bdist.linux-armv7l/wheel/capcruncher-0.3.6-py3.11.egg-info
2023-10-10T17:24:15,230   running install_scripts
2023-10-10T17:24:15,255   creating build/bdist.linux-armv7l/wheel/capcruncher-0.3.6.dist-info/WHEEL
2023-10-10T17:24:15,258   creating '/tmp/pip-wheel-mvt6rqvb/.tmp-c9jlvgfj/capcruncher-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-10T17:24:15,260   adding 'capcruncher/__init__.py'
2023-10-10T17:24:15,261   adding 'capcruncher/_version.py'
2023-10-10T17:24:15,264   adding 'capcruncher/utils.py'
2023-10-10T17:24:15,265   adding 'capcruncher/api/__init__.py'
2023-10-10T17:24:15,267   adding 'capcruncher/api/annotate.py'
2023-10-10T17:24:15,271   adding 'capcruncher/api/filter.py'
2023-10-10T17:24:15,273   adding 'capcruncher/api/io.py'
2023-10-10T17:24:15,275   adding 'capcruncher/api/pileup.py'
2023-10-10T17:24:15,279   adding 'capcruncher/api/plotting.py'
2023-10-10T17:24:15,281   adding 'capcruncher/api/statistics.py'
2023-10-10T17:24:15,283   adding 'capcruncher/api/storage.py'
2023-10-10T17:24:15,285   adding 'capcruncher/cli/__init__.py'
2023-10-10T17:24:15,287   adding 'capcruncher/cli/alignments_annotate.py'
2023-10-10T17:24:15,289   adding 'capcruncher/cli/alignments_filter.py'
2023-10-10T17:24:15,290   adding 'capcruncher/cli/cli_alignments.py'
2023-10-10T17:24:15,292   adding 'capcruncher/cli/cli_fastq.py'
2023-10-10T17:24:15,293   adding 'capcruncher/cli/cli_genome.py'
2023-10-10T17:24:15,295   adding 'capcruncher/cli/cli_interactions.py'
2023-10-10T17:24:15,296   adding 'capcruncher/cli/cli_pipeline.py'
2023-10-10T17:24:15,298   adding 'capcruncher/cli/cli_plot.py'
2023-10-10T17:24:15,300   adding 'capcruncher/cli/cli_utilities.py'
2023-10-10T17:24:15,301   adding 'capcruncher/cli/fastq_deduplicate.py'
2023-10-10T17:24:15,303   adding 'capcruncher/cli/fastq_digest.py'
2023-10-10T17:24:15,304   adding 'capcruncher/cli/fastq_split.py'
2023-10-10T17:24:15,306   adding 'capcruncher/cli/genome_digest.py'
2023-10-10T17:24:15,307   adding 'capcruncher/cli/interactions_compare.py'
2023-10-10T17:24:15,308   adding 'capcruncher/cli/interactions_count.py'
2023-10-10T17:24:15,310   adding 'capcruncher/cli/interactions_deduplicate.py'
2023-10-10T17:24:15,312   adding 'capcruncher/cli/interactions_differential.py'
2023-10-10T17:24:15,313   adding 'capcruncher/cli/interactions_pileup.py'
2023-10-10T17:24:15,315   adding 'capcruncher/cli/interactions_store.py'
2023-10-10T17:24:15,316   adding 'capcruncher/cli/plot.py'
2023-10-10T17:24:15,318   adding 'capcruncher/data/logo.txt'
2023-10-10T17:24:15,321   adding 'capcruncher/pipeline/utils.py'
2023-10-10T17:24:15,323   adding 'capcruncher/pipeline/config/cookiecutter.json'
2023-10-10T17:24:15,325   adding 'capcruncher/pipeline/config/{{cookiecutter.date}}_{{cookiecutter.__project_id}}_{{cookiecutter.__assay}}/capcruncher_config.yml'
2023-10-10T17:24:15,327   adding 'capcruncher/pipeline/workflow/Snakefile'
2023-10-10T17:24:15,328   adding 'capcruncher/pipeline/workflow/data/annotation_defaults.json'
2023-10-10T17:24:15,330   adding 'capcruncher/pipeline/workflow/envs/environment.yml'
2023-10-10T17:24:15,332   adding 'capcruncher/pipeline/workflow/envs/profiles/profile_drmaa_singularity/config.yaml'
2023-10-10T17:24:15,334   adding 'capcruncher/pipeline/workflow/envs/profiles/profile_singularity/config.yaml'
2023-10-10T17:24:15,336   adding 'capcruncher/pipeline/workflow/report/capcruncher_report.qmd'
2023-10-10T17:24:15,339   adding 'capcruncher/pipeline/workflow/report/make_report.py'
2023-10-10T17:24:15,340   adding 'capcruncher/pipeline/workflow/report/report_text.yml'
2023-10-10T17:24:15,342   adding 'capcruncher/pipeline/workflow/rules/align.smk'
2023-10-10T17:24:15,344   adding 'capcruncher/pipeline/workflow/rules/annotate.smk'
2023-10-10T17:24:15,345   adding 'capcruncher/pipeline/workflow/rules/compare.smk'
2023-10-10T17:24:15,346   adding 'capcruncher/pipeline/workflow/rules/digest.smk'
2023-10-10T17:24:15,348   adding 'capcruncher/pipeline/workflow/rules/fastq.smk'
2023-10-10T17:24:15,349   adding 'capcruncher/pipeline/workflow/rules/filter.smk'
2023-10-10T17:24:15,350   adding 'capcruncher/pipeline/workflow/rules/pileup.smk'
2023-10-10T17:24:15,351   adding 'capcruncher/pipeline/workflow/rules/qc.smk'
2023-10-10T17:24:15,353   adding 'capcruncher/pipeline/workflow/rules/statistics.smk'
2023-10-10T17:24:15,354   adding 'capcruncher/pipeline/workflow/rules/visualise.smk'
2023-10-10T17:24:15,356   adding 'capcruncher/pipeline/workflow/scripts/combine_alignment_deduplication_stats.py'
2023-10-10T17:24:15,357   adding 'capcruncher/pipeline/workflow/scripts/combine_cis_and_trans_stats.py'
2023-10-10T17:24:15,358   adding 'capcruncher/pipeline/workflow/scripts/combine_deduplication_stats.py'
2023-10-10T17:24:15,359   adding 'capcruncher/pipeline/workflow/scripts/combine_digestion_stats.py'
2023-10-10T17:24:15,360   adding 'capcruncher/pipeline/workflow/scripts/combine_filtering_stats.py'
2023-10-10T17:24:15,361   adding 'capcruncher/pipeline/workflow/scripts/combine_stats_read_level.py'
2023-10-10T17:24:15,362   adding 'capcruncher/pipeline/workflow/scripts/count_identified_viewpoints.py'
2023-10-10T17:24:15,363   adding 'capcruncher/pipeline/workflow/scripts/identify_viewpoints_with_interactions.py'
2023-10-10T17:24:15,365   adding 'capcruncher/pipeline/workflow/scripts/make_ucsc_hub.py'
2023-10-10T17:24:15,366   adding 'capcruncher/pipeline/workflow/scripts/plot.py'
2023-10-10T17:24:15,367   adding 'capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py'
2023-10-10T17:24:15,368   adding 'capcruncher/pipeline/workflow/scripts/validation_check_n_bins_per_viewpoint.py'
2023-10-10T17:24:15,370   adding 'capcruncher/pipeline/workflow/scripts/validation_confirm_annotated_viewpoints_present.py'
2023-10-10T17:24:15,377   adding 'capcruncher-0.3.6.dist-info/LICENSE'
2023-10-10T17:24:15,384   adding 'capcruncher-0.3.6.dist-info/METADATA'
2023-10-10T17:24:15,386   adding 'capcruncher-0.3.6.dist-info/WHEEL'
2023-10-10T17:24:15,387   adding 'capcruncher-0.3.6.dist-info/entry_points.txt'
2023-10-10T17:24:15,387   adding 'capcruncher-0.3.6.dist-info/top_level.txt'
2023-10-10T17:24:15,389   adding 'capcruncher-0.3.6.dist-info/RECORD'
2023-10-10T17:24:15,393   removing build/bdist.linux-armv7l/wheel
2023-10-10T17:24:15,538   Building wheel for capcruncher (pyproject.toml): finished with status 'done'
2023-10-10T17:24:15,545   Created wheel for capcruncher: filename=capcruncher-0.3.6-py3-none-any.whl size=147164 sha256=23a2d1c72b352805d9f9be1e5a4e44c51548843db7f756423e2b15b817a5c626
2023-10-10T17:24:15,547   Stored in directory: /tmp/pip-ephem-wheel-cache-30qeh45t/wheels/e1/b6/9f/26f2560711d9331d5e18d8ed86763ca9057d0cd1114b073a8f
2023-10-10T17:24:15,582 Successfully built capcruncher
2023-10-10T17:24:15,590 Removed build tracker: '/tmp/pip-build-tracker-xk8fu1er'