2023-10-11T05:00:41,024 Created temporary directory: /tmp/pip-build-tracker-2__m3_cw
2023-10-11T05:00:41,025 Initialized build tracking at /tmp/pip-build-tracker-2__m3_cw
2023-10-11T05:00:41,026 Created build tracker: /tmp/pip-build-tracker-2__m3_cw
2023-10-11T05:00:41,026 Entered build tracker: /tmp/pip-build-tracker-2__m3_cw
2023-10-11T05:00:41,027 Created temporary directory: /tmp/pip-wheel-6emu2c6z
2023-10-11T05:00:41,030 Created temporary directory: /tmp/pip-ephem-wheel-cache-is3ld9qa
2023-10-11T05:00:41,052 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-11T05:00:41,056 2 location(s) to search for versions of scregat:
2023-10-11T05:00:41,056 * https://pypi.org/simple/scregat/
2023-10-11T05:00:41,056 * https://www.piwheels.org/simple/scregat/
2023-10-11T05:00:41,057 Fetching project page and analyzing links: https://pypi.org/simple/scregat/
2023-10-11T05:00:41,058 Getting page https://pypi.org/simple/scregat/
2023-10-11T05:00:41,059 Found index url https://pypi.org/simple/
2023-10-11T05:00:41,284 Fetched page https://pypi.org/simple/scregat/ as application/vnd.pypi.simple.v1+json
2023-10-11T05:00:41,288   Found link https://files.pythonhosted.org/packages/f8/4f/eaf93a3e08f464ed5c50e228ec2691927b1188ae17119e7dfd957e0985ed/scReGAT-0.0.0.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.0
2023-10-11T05:00:41,289   Found link https://files.pythonhosted.org/packages/13/da/a41a9f3b020c4a3d54620420d14bfd6f7002656eb5ad638bb63e1e1442df/scReGAT-0.0.1.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.1
2023-10-11T05:00:41,290   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/c6/db/c6760a743b3f7786b11a72f96256275a160bc1375cf340a9559cd23f22f0/scReGAT-0.0.2-py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,291   Found link https://files.pythonhosted.org/packages/48/8f/704eeb7f0e5d711be746f06bf8318c8341eb281ab9abb3caddd0a7e442eb/scReGAT-0.0.2.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.2
2023-10-11T05:00:41,291   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/e0/96/93d34c57b4d05b6c84523115b4b138d16d5bc0c7ce6d45b2f3fe3ddb26df/scReGAT-0.0.3-py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,292   Found link https://files.pythonhosted.org/packages/12/0b/302bdebeab774610951a502c1a1f09f5b725e8bce4ab7f2868369675b9cb/scReGAT-0.0.3.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.3
2023-10-11T05:00:41,293   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/d8/4c/66c7ec7cba75964503e8145b95a3a82903dd5655a64ba8c1fdb6a8a2c4b7/scReGAT-0.0.4-py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,294   Found link https://files.pythonhosted.org/packages/fb/c0/9b74442dd08c1c4447c2431ac8d3fd1d04543a85bd0a358e5fdc1fd432bb/scReGAT-0.0.4.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.4
2023-10-11T05:00:41,295   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/a5/6f/5c2f2d88ba750a79318bdacf9646d1aed0a8cbd9560cc1048c2f4439b6d2/scReGAT-0.0.5-py2.py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,295   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/4b/70/92eb54994ca6b3bac49a4b456c1d788011e6cd599e58ad97178052ff6cc1/scReGAT-0.0.5-py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,296   Found link https://files.pythonhosted.org/packages/91/b7/66521bd778221cda34dead17104e7998e8ce19d22d4263772d5f1c90e1fc/scReGAT-0.0.5.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.5
2023-10-11T05:00:41,297   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/24/51/48b7b603b548f5195bfc44f53ccdda3fa21000a9a9fd7712206714648bf2/scReGAT-0.0.6-py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,298   Found link https://files.pythonhosted.org/packages/d5/c1/191f930b8776f2e6be5c73e889511eaaca2e2b66b8dad29bea29f010915a/scReGAT-0.0.6.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.6
2023-10-11T05:00:41,299   Skipping link: No binaries permitted for scregat: https://files.pythonhosted.org/packages/9d/44/03a3150691bb12f740e97843659c4ed26464094e1f9fa25126088c214b0c/scReGAT-0.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,300   Found link https://files.pythonhosted.org/packages/63/5a/360cad2db573e7ce98d236be4bff67671416718c8b4234ea8124a9172c3e/scReGAT-0.0.7.tar.gz (from https://pypi.org/simple/scregat/) (requires-python:>=3.8.3), version: 0.0.7
2023-10-11T05:00:41,300 Fetching project page and analyzing links: https://www.piwheels.org/simple/scregat/
2023-10-11T05:00:41,301 Getting page https://www.piwheels.org/simple/scregat/
2023-10-11T05:00:41,302 Found index url https://www.piwheels.org/simple/
2023-10-11T05:00:41,467 Fetched page https://www.piwheels.org/simple/scregat/ as text/html
2023-10-11T05:00:41,470   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.6-py3-none-any.whl#sha256=13744b58584023a6f2f47ea68ce6e902f2ddde4a9f9cfc342cf3e5493687b424 (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,471   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.5-py3-none-any.whl#sha256=edcc1652c54946586a8a1ea5af078971d4e922e5838419fbd328b764b30000a0 (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,471   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.4-py3-none-any.whl#sha256=e6179a3dde310d89e9894559477faaa46f27675f0ebfb0094041067aa4eb5ba3 (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,472   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.3-py3-none-any.whl#sha256=8e80e88da41da67f53f4a20ca33aaa8bf6b6465168b687f504562e43e2432f81 (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,472   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.2-py3-none-any.whl#sha256=9f09b5f38b60192d3c43c5e2b7107670c01579bafaab47b4b958a18b0446c44b (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,473   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.1-py3-none-any.whl#sha256=a88733338ebb0613fc28499904b1258c9d69ed8ccf57d7c9daf8fb4fa1d4956e (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,474   Skipping link: No binaries permitted for scregat: https://www.piwheels.org/simple/scregat/scReGAT-0.0.0-py3-none-any.whl#sha256=1bed380ca2dcc001f58e4fedd555d689349eebc7243c0bc01ec33bfa09589c97 (from https://www.piwheels.org/simple/scregat/) (requires-python:>=3.8.3)
2023-10-11T05:00:41,474 Skipping link: not a file: https://www.piwheels.org/simple/scregat/
2023-10-11T05:00:41,475 Skipping link: not a file: https://pypi.org/simple/scregat/
2023-10-11T05:00:41,494 Given no hashes to check 1 links for project 'scregat': discarding no candidates
2023-10-11T05:00:41,511 Collecting scregat==0.0.7
2023-10-11T05:00:41,514   Created temporary directory: /tmp/pip-unpack-7unsj1ow
2023-10-11T05:00:41,748   Downloading scReGAT-0.0.7.tar.gz (102.1 MB)
2023-10-11T05:01:20,425   Added scregat==0.0.7 from https://files.pythonhosted.org/packages/63/5a/360cad2db573e7ce98d236be4bff67671416718c8b4234ea8124a9172c3e/scReGAT-0.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-2__m3_cw'
2023-10-11T05:01:20,428   Running setup.py (path:/tmp/pip-wheel-6emu2c6z/scregat_d36912757d974bcc8f47c6ce77b8a67a/setup.py) egg_info for package scregat
2023-10-11T05:01:20,429   Created temporary directory: /tmp/pip-pip-egg-info-mry76vum
2023-10-11T05:01:20,429   Preparing metadata (setup.py): started
2023-10-11T05:01:20,431   Running command python setup.py egg_info
2023-10-11T05:01:21,468   running egg_info
2023-10-11T05:01:21,469   creating /tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info
2023-10-11T05:01:21,493   writing /tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/PKG-INFO
2023-10-11T05:01:21,496   writing dependency_links to /tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/dependency_links.txt
2023-10-11T05:01:21,498   writing requirements to /tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/requires.txt
2023-10-11T05:01:21,499   writing top-level names to /tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/top_level.txt
2023-10-11T05:01:21,501   writing manifest file '/tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/SOURCES.txt'
2023-10-11T05:01:21,575   reading manifest file '/tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/SOURCES.txt'
2023-10-11T05:01:21,576   adding license file 'LICENSE'
2023-10-11T05:01:21,578   writing manifest file '/tmp/pip-pip-egg-info-mry76vum/scReGAT.egg-info/SOURCES.txt'
2023-10-11T05:01:21,685   Preparing metadata (setup.py): finished with status 'done'
2023-10-11T05:01:21,689   Source in /tmp/pip-wheel-6emu2c6z/scregat_d36912757d974bcc8f47c6ce77b8a67a has version 0.0.7, which satisfies requirement scregat==0.0.7 from https://files.pythonhosted.org/packages/63/5a/360cad2db573e7ce98d236be4bff67671416718c8b4234ea8124a9172c3e/scReGAT-0.0.7.tar.gz
2023-10-11T05:01:21,690   Removed scregat==0.0.7 from https://files.pythonhosted.org/packages/63/5a/360cad2db573e7ce98d236be4bff67671416718c8b4234ea8124a9172c3e/scReGAT-0.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-2__m3_cw'
2023-10-11T05:01:21,696 Created temporary directory: /tmp/pip-unpack-3vzgqn02
2023-10-11T05:01:21,697 Created temporary directory: /tmp/pip-unpack-4ajjz1w3
2023-10-11T05:01:21,718 Building wheels for collected packages: scregat
2023-10-11T05:01:21,722   Created temporary directory: /tmp/pip-wheel-ye5ebzx5
2023-10-11T05:01:21,723   Building wheel for scregat (setup.py): started
2023-10-11T05:01:21,724   Destination directory: /tmp/pip-wheel-ye5ebzx5
2023-10-11T05:01:21,725   Running command python setup.py bdist_wheel
2023-10-11T05:01:22,702   running bdist_wheel
2023-10-11T05:01:22,796   running build
2023-10-11T05:01:22,796   running build_py
2023-10-11T05:01:22,824   creating build
2023-10-11T05:01:22,825   creating build/lib
2023-10-11T05:01:22,826   creating build/lib/scregat
2023-10-11T05:01:22,828   copying scregat/model.py -> build/lib/scregat
2023-10-11T05:01:22,831   copying scregat/data_process.py -> build/lib/scregat
2023-10-11T05:01:22,834   copying scregat/__init__.py -> build/lib/scregat
2023-10-11T05:01:22,836   creating build/lib/example
2023-10-11T05:01:22,838   copying example/__init__.py -> build/lib/example
2023-10-11T05:01:22,840   running egg_info
2023-10-11T05:01:22,895   writing scReGAT.egg-info/PKG-INFO
2023-10-11T05:01:22,901   writing dependency_links to scReGAT.egg-info/dependency_links.txt
2023-10-11T05:01:22,904   writing requirements to scReGAT.egg-info/requires.txt
2023-10-11T05:01:22,905   writing top-level names to scReGAT.egg-info/top_level.txt
2023-10-11T05:01:22,932   reading manifest file 'scReGAT.egg-info/SOURCES.txt'
2023-10-11T05:01:22,935   adding license file 'LICENSE'
2023-10-11T05:01:22,937   writing manifest file 'scReGAT.egg-info/SOURCES.txt'
2023-10-11T05:01:22,939   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'scregat.data' is absent from the `packages` configuration.
2023-10-11T05:01:22,940   !!

2023-10-11T05:01:22,942           ********************************************************************************
2023-10-11T05:01:22,942           ############################
2023-10-11T05:01:22,943           # Package would be ignored #
2023-10-11T05:01:22,943           ############################
2023-10-11T05:01:22,944           Python recognizes 'scregat.data' as an importable package[^1],
2023-10-11T05:01:22,945           but it is absent from setuptools' `packages` configuration.

2023-10-11T05:01:22,945           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-11T05:01:22,946           package, please make sure that 'scregat.data' is explicitly added
2023-10-11T05:01:22,946           to the `packages` configuration field.

2023-10-11T05:01:22,947           Alternatively, you can also rely on setuptools' discovery methods
2023-10-11T05:01:22,947           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-11T05:01:22,948           instead of `find_packages(...)`/`find:`).

2023-10-11T05:01:22,948           You can read more about "package discovery" on setuptools documentation page:

2023-10-11T05:01:22,949           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-11T05:01:22,950           If you don't want 'scregat.data' to be distributed and are
2023-10-11T05:01:22,951           already explicitly excluding 'scregat.data' via
2023-10-11T05:01:22,951           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-11T05:01:22,951           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-11T05:01:22,952           combination with a more fine grained `package-data` configuration.

2023-10-11T05:01:22,953           You can read more about "package data files" on setuptools documentation page:

2023-10-11T05:01:22,953           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-11T05:01:22,955           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-11T05:01:22,956                 even if it does not contain any `.py` files.
2023-10-11T05:01:22,956                 On the other hand, currently there is no concept of package data
2023-10-11T05:01:22,957                 directory, all directories are treated like packages.
2023-10-11T05:01:22,957           ********************************************************************************

2023-10-11T05:01:22,959   !!
2023-10-11T05:01:22,959     check.warn(importable)
2023-10-11T05:01:22,960   creating build/lib/scregat/data
2023-10-11T05:01:22,960   copying scregat/data/PO.txt -> build/lib/scregat/data
2023-10-11T05:01:24,031   copying scregat/data/PP.txt -> build/lib/scregat/data
2023-10-11T05:01:24,089   copying scregat/data/all_tissue_SNP_Gene.txt -> build/lib/scregat/data
2023-10-11T05:01:43,392   copying scregat/data/genes.protein.tss.tsv -> build/lib/scregat/data
2023-10-11T05:01:43,404   copying scregat/data/hg38.chrom.sizes -> build/lib/scregat/data
2023-10-11T05:01:43,407   copying scregat/data/trrust_rawdata.human.tsv -> build/lib/scregat/data
2023-10-11T05:01:43,437   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-11T05:01:43,438   !!

2023-10-11T05:01:43,439           ********************************************************************************
2023-10-11T05:01:43,440           Please avoid running ``setup.py`` directly.
2023-10-11T05:01:43,440           Instead, use pypa/build, pypa/installer or other
2023-10-11T05:01:43,441           standards-based tools.

2023-10-11T05:01:43,442           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-11T05:01:43,442           ********************************************************************************

2023-10-11T05:01:43,443   !!
2023-10-11T05:01:43,444     self.initialize_options()
2023-10-11T05:01:43,465   installing to build/bdist.linux-armv7l/wheel
2023-10-11T05:01:43,466   running install
2023-10-11T05:01:43,490   running install_lib
2023-10-11T05:01:43,514   creating build/bdist.linux-armv7l
2023-10-11T05:01:43,515   creating build/bdist.linux-armv7l/wheel
2023-10-11T05:01:43,517   creating build/bdist.linux-armv7l/wheel/scregat
2023-10-11T05:01:43,518   copying build/lib/scregat/model.py -> build/bdist.linux-armv7l/wheel/scregat
2023-10-11T05:01:43,522   creating build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:01:43,523   copying build/lib/scregat/data/PP.txt -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:01:43,576   copying build/lib/scregat/data/trrust_rawdata.human.tsv -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:01:43,589   copying build/lib/scregat/data/PO.txt -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:01:45,646   copying build/lib/scregat/data/all_tissue_SNP_Gene.txt -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:02:09,737   copying build/lib/scregat/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:02:09,740   copying build/lib/scregat/data/genes.protein.tss.tsv -> build/bdist.linux-armv7l/wheel/scregat/data
2023-10-11T05:02:09,759   copying build/lib/scregat/data_process.py -> build/bdist.linux-armv7l/wheel/scregat
2023-10-11T05:02:09,763   copying build/lib/scregat/__init__.py -> build/bdist.linux-armv7l/wheel/scregat
2023-10-11T05:02:09,766   creating build/bdist.linux-armv7l/wheel/example
2023-10-11T05:02:09,767   copying build/lib/example/__init__.py -> build/bdist.linux-armv7l/wheel/example
2023-10-11T05:02:09,770   running install_egg_info
2023-10-11T05:02:09,804   Copying scReGAT.egg-info to build/bdist.linux-armv7l/wheel/scReGAT-0.0.7-py3.11.egg-info
2023-10-11T05:02:09,817   running install_scripts
2023-10-11T05:02:09,837   creating build/bdist.linux-armv7l/wheel/scReGAT-0.0.7.dist-info/WHEEL
2023-10-11T05:02:09,841   creating '/tmp/pip-wheel-ye5ebzx5/scReGAT-0.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-11T05:02:09,844   adding 'example/__init__.py'
2023-10-11T05:02:09,847   adding 'scregat/__init__.py'
2023-10-11T05:02:09,851   adding 'scregat/data_process.py'
2023-10-11T05:02:09,854   adding 'scregat/model.py'
2023-10-11T05:02:18,171   adding 'scregat/data/PO.txt'
2023-10-11T05:02:20,122   adding 'scregat/data/PP.txt'
2023-10-11T05:04:20,625   adding 'scregat/data/all_tissue_SNP_Gene.txt'
2023-10-11T05:04:26,919   adding 'scregat/data/genes.protein.tss.tsv'
2023-10-11T05:04:26,928   adding 'scregat/data/hg38.chrom.sizes'
2023-10-11T05:04:26,968   adding 'scregat/data/trrust_rawdata.human.tsv'
2023-10-11T05:04:26,972   adding 'scReGAT-0.0.7.dist-info/LICENSE'
2023-10-11T05:04:26,973   adding 'scReGAT-0.0.7.dist-info/METADATA'
2023-10-11T05:04:26,975   adding 'scReGAT-0.0.7.dist-info/WHEEL'
2023-10-11T05:04:26,976   adding 'scReGAT-0.0.7.dist-info/top_level.txt'
2023-10-11T05:04:26,976   adding 'scReGAT-0.0.7.dist-info/RECORD'
2023-10-11T05:04:26,983   removing build/bdist.linux-armv7l/wheel
2023-10-11T05:04:27,322   Building wheel for scregat (setup.py): finished with status 'done'
2023-10-11T05:04:28,512   Created wheel for scregat: filename=scReGAT-0.0.7-py3-none-any.whl size=102313718 sha256=8283c85b6292bccd616c5ea2b2b7989d70a11b80c5f22e63c2179b8019c2ba97
2023-10-11T05:04:28,514   Stored in directory: /tmp/pip-ephem-wheel-cache-is3ld9qa/wheels/5a/56/fe/8f974d09938e8c6ca333fa6382b1e4c2956ad5b5d7c67d6493
2023-10-11T05:04:28,556 Successfully built scregat
2023-10-11T05:04:30,877 Removed build tracker: '/tmp/pip-build-tracker-2__m3_cw'