2023-10-12T09:38:50,446 Created temporary directory: /tmp/pip-build-tracker-axdnv70c 2023-10-12T09:38:50,447 Initialized build tracking at /tmp/pip-build-tracker-axdnv70c 2023-10-12T09:38:50,447 Created build tracker: /tmp/pip-build-tracker-axdnv70c 2023-10-12T09:38:50,448 Entered build tracker: /tmp/pip-build-tracker-axdnv70c 2023-10-12T09:38:50,448 Created temporary directory: /tmp/pip-wheel-mmzvv_hc 2023-10-12T09:38:50,451 Created temporary directory: /tmp/pip-ephem-wheel-cache-gh89gy9a 2023-10-12T09:38:50,473 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-12T09:38:50,477 2 location(s) to search for versions of mdapy: 2023-10-12T09:38:50,477 * https://pypi.org/simple/mdapy/ 2023-10-12T09:38:50,477 * https://www.piwheels.org/simple/mdapy/ 2023-10-12T09:38:50,478 Fetching project page and analyzing links: https://pypi.org/simple/mdapy/ 2023-10-12T09:38:50,479 Getting page https://pypi.org/simple/mdapy/ 2023-10-12T09:38:50,480 Found index url https://pypi.org/simple/ 2023-10-12T09:38:50,708 Fetched page https://pypi.org/simple/mdapy/ as application/vnd.pypi.simple.v1+json 2023-10-12T09:38:50,740 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f8/b3/fa3165f5371bf25f330d582412ce6111d81d16e1068c6a52fff3aeed48fd/mdapy-0.7.6-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,741 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/af/78/2606a229dc0aeee9d63eecc4aaa6768aa4d2bb0a78564e452d46b970a43a/mdapy-0.7.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,742 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/73/6a/640a3d6e6e3c97d06a1bf73d2b6904c3a7f1b1a9c11de29ae1e0476fe7c6/mdapy-0.7.6-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,742 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/66/fc/4d83046add95582345104742c12fb8e2a6b3a8968732fe31c8579f5a97ef/mdapy-0.7.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,743 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/07/5c/7a729f1a535afa699f6dfb3b0397896298f5657a64b71084398cf6cfdc49/mdapy-0.7.6-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,744 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/d5/75/b981c88ef7545d76c6319a483c42086b789bf60aa8ee28eb0607f5f8b154/mdapy-0.7.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,744 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ce/f4/0990d772c757a937e56751013af5908d37cff6ecb567d08ce583492c9d1b/mdapy-0.7.6-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,745 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/42/e6/0e929a981723be23cf81fcc63c7b3c01ca77c8922750a4cbbbb83e267c79/mdapy-0.7.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,746 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/2c/f0eb260b52cfb221f26d5c334067e6d40e62ee530257b26202bc6db7d1a5/mdapy-0.7.7-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,746 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/34/8a/93cd6fbd746a8c595d4af152a3dbcf030e6d28659886cd07a4b2f1e8e1c2/mdapy-0.7.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,747 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/bc/ad/c7c9bdfaa2b1fdb0053910f21cf3f7ff576a2880a6d6c17767ea9232faa3/mdapy-0.7.7-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,748 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f3/bf/9be55b37f2e836515bc7f1b8e9668dc5e2fd023cb79656647fbed4d1f1be/mdapy-0.7.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,749 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/8b/a9/45c25f4ab8b7ab05ec032f1dfa62c1d7804fa146c2b212b4daf059ddc6a2/mdapy-0.7.7-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-10-12T09:38:50,749 Skipping link: No binaries permitted for mdapy: 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https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-10-12T09:38:50,751 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/47/83/350174a1238e5d982e7d5a58966ffb1b142fb1c65d15359d8b58b3455b7a/mdapy-0.7.8-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-10-12T09:38:50,752 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/52/f6/c3fe6f103679c6ad7285525645c4bf14ae435a289b08a3830b374a81cecf/mdapy-0.7.8-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-10-12T09:38:50,752 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/b2/50/dbac02eb7159c6e96f0d5bbb97ae538f52fc7ec25423e600caa81aeab089/mdapy-0.7.8-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-10-12T09:38:50,753 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/6c/86/04b2915a9e2db3b5b5d51edfc5c4c866a56f72e03eedbfe3e9a54744e6fe/mdapy-0.9.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-10-12T09:38:50,853 Found link https://files.pythonhosted.org/packages/d6/dd/8d32f18ff4bc2b2373ce0af8053c9c8288f08ee3e66ad49ab19c4c2134e1/mdapy-0.9.2.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12), version: 0.9.2 2023-10-12T09:38:50,854 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdapy/ 2023-10-12T09:38:50,855 Getting page https://www.piwheels.org/simple/mdapy/ 2023-10-12T09:38:50,856 Found index url https://www.piwheels.org/simple/ 2023-10-12T09:38:51,007 Fetched page https://www.piwheels.org/simple/mdapy/ as text/html 2023-10-12T09:38:51,010 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-10-12T09:38:51,010 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-10-12T09:38:51,011 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-10-12T09:38:51,011 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-10-12T09:38:51,012 Skipping link: not a file: https://www.piwheels.org/simple/mdapy/ 2023-10-12T09:38:51,013 Skipping link: not a file: https://pypi.org/simple/mdapy/ 2023-10-12T09:38:51,031 Given no hashes to check 1 links for project 'mdapy': discarding no candidates 2023-10-12T09:38:51,049 Collecting mdapy==0.9.2 2023-10-12T09:38:51,051 Created temporary directory: /tmp/pip-unpack-gc_t__4y 2023-10-12T09:38:51,274 Downloading mdapy-0.9.2.tar.gz (4.1 MB) 2023-10-12T09:38:52,568 Added mdapy==0.9.2 from https://files.pythonhosted.org/packages/d6/dd/8d32f18ff4bc2b2373ce0af8053c9c8288f08ee3e66ad49ab19c4c2134e1/mdapy-0.9.2.tar.gz to build tracker '/tmp/pip-build-tracker-axdnv70c' 2023-10-12T09:38:52,573 Created temporary directory: /tmp/pip-build-env-8rmcjtu_ 2023-10-12T09:38:52,577 Installing build dependencies: started 2023-10-12T09:38:52,579 Running command pip subprocess to install build dependencies 2023-10-12T09:38:53,746 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-12T09:38:54,252 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-12T09:38:55,807 Collecting setuptools 2023-10-12T09:38:55,879 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-12T09:38:56,114 Collecting wheel 2023-10-12T09:38:56,135 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-12T09:38:56,326 Collecting pybind11 2023-10-12T09:38:56,355 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.11.1-py3-none-any.whl (227 kB) 2023-10-12T09:38:58,981 Installing collected packages: wheel, setuptools, pybind11 2023-10-12T09:38:59,203 Creating /tmp/pip-build-env-8rmcjtu_/overlay/local/bin 2023-10-12T09:38:59,205 changing mode of /tmp/pip-build-env-8rmcjtu_/overlay/local/bin/wheel to 755 2023-10-12T09:39:01,519 changing mode of /tmp/pip-build-env-8rmcjtu_/overlay/local/bin/pybind11-config to 755 2023-10-12T09:39:01,542 Successfully installed pybind11-2.11.1 setuptools-68.2.2 wheel-0.41.2 2023-10-12T09:39:02,085 Installing build dependencies: finished with status 'done' 2023-10-12T09:39:02,088 Getting requirements to build wheel: started 2023-10-12T09:39:02,089 Running command Getting requirements to build wheel 2023-10-12T09:39:02,643 running egg_info 2023-10-12T09:39:02,648 writing mdapy.egg-info/PKG-INFO 2023-10-12T09:39:02,651 writing dependency_links to mdapy.egg-info/dependency_links.txt 2023-10-12T09:39:02,653 writing requirements to mdapy.egg-info/requires.txt 2023-10-12T09:39:02,654 writing top-level names to mdapy.egg-info/top_level.txt 2023-10-12T09:39:02,677 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2023-10-12T09:39:02,696 adding license file 'LICENSE' 2023-10-12T09:39:02,703 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2023-10-12T09:39:02,782 Getting requirements to build wheel: finished with status 'done' 2023-10-12T09:39:02,794 Created temporary directory: /tmp/pip-modern-metadata-kz90xnmj 2023-10-12T09:39:02,796 Preparing metadata (pyproject.toml): started 2023-10-12T09:39:02,797 Running command Preparing metadata (pyproject.toml) 2023-10-12T09:39:03,294 running dist_info 2023-10-12T09:39:03,313 creating /tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info 2023-10-12T09:39:03,318 writing /tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/PKG-INFO 2023-10-12T09:39:03,323 writing dependency_links to /tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/dependency_links.txt 2023-10-12T09:39:03,325 writing requirements to /tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/requires.txt 2023-10-12T09:39:03,326 writing top-level names to /tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/top_level.txt 2023-10-12T09:39:03,327 writing manifest file '/tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/SOURCES.txt' 2023-10-12T09:39:03,346 reading manifest file '/tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/SOURCES.txt' 2023-10-12T09:39:03,348 adding license file 'LICENSE' 2023-10-12T09:39:03,351 writing manifest file '/tmp/pip-modern-metadata-kz90xnmj/mdapy.egg-info/SOURCES.txt' 2023-10-12T09:39:03,352 creating '/tmp/pip-modern-metadata-kz90xnmj/mdapy-0.9.2.dist-info' 2023-10-12T09:39:03,537 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-12T09:39:03,543 Source in /tmp/pip-wheel-mmzvv_hc/mdapy_ce69fc8dfde64a7a94f489ef61d049ef has version 0.9.2, which satisfies requirement mdapy==0.9.2 from https://files.pythonhosted.org/packages/d6/dd/8d32f18ff4bc2b2373ce0af8053c9c8288f08ee3e66ad49ab19c4c2134e1/mdapy-0.9.2.tar.gz 2023-10-12T09:39:03,544 Removed mdapy==0.9.2 from https://files.pythonhosted.org/packages/d6/dd/8d32f18ff4bc2b2373ce0af8053c9c8288f08ee3e66ad49ab19c4c2134e1/mdapy-0.9.2.tar.gz from build tracker '/tmp/pip-build-tracker-axdnv70c' 2023-10-12T09:39:03,550 Created temporary directory: /tmp/pip-unpack-5o9e7x9j 2023-10-12T09:39:03,551 Created temporary directory: /tmp/pip-unpack-rco62m8f 2023-10-12T09:39:03,564 Building wheels for collected packages: mdapy 2023-10-12T09:39:03,568 Created temporary directory: /tmp/pip-wheel-ycnhhhvk 2023-10-12T09:39:03,569 Destination directory: /tmp/pip-wheel-ycnhhhvk 2023-10-12T09:39:03,572 Building wheel for mdapy (pyproject.toml): started 2023-10-12T09:39:03,573 Running command Building wheel for mdapy (pyproject.toml) 2023-10-12T09:39:04,109 running bdist_wheel 2023-10-12T09:39:04,138 running build 2023-10-12T09:39:04,138 running build_py 2023-10-12T09:39:04,146 creating build 2023-10-12T09:39:04,147 creating build/lib.linux-armv7l-cpython-311 2023-10-12T09:39:04,147 creating build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,149 copying mdapy/pigz.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,151 copying mdapy/nearest_neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,154 copying mdapy/plotset.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,155 copying mdapy/entropy.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,158 copying mdapy/eam_generate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,160 copying mdapy/calculator.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,163 copying mdapy/replicate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,165 copying mdapy/common_neighbor_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,167 copying mdapy/timer.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,168 copying mdapy/steinhardt_bond_orientation.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,171 copying mdapy/eam_average.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,173 copying mdapy/mean_squared_displacement.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,175 copying mdapy/cluser_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,177 copying mdapy/create_polycrystalline.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,179 copying mdapy/load_save_data.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,181 copying mdapy/temperature.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,183 copying mdapy/tool_function.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,185 copying mdapy/identify_SFs_TBs.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,187 copying mdapy/polyhedral_template_matching.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,189 copying mdapy/spatial_binning.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,192 copying mdapy/void_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,194 copying mdapy/__init__.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,196 copying mdapy/voronoi_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,198 copying mdapy/lindemann_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,200 copying mdapy/system.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,203 copying mdapy/common_neighbor_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,205 copying mdapy/lattice_maker.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,207 copying mdapy/centro_symmetry_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,210 copying mdapy/warren_cowley_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,212 copying mdapy/potential.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,214 copying mdapy/ackland_jones_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,216 copying mdapy/pair_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,218 copying mdapy/neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,222 running build_ext 2023-10-12T09:39:04,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c flagcheck.cpp -o flagcheck.o -std=c++17 2023-10-12T09:39:04,310 building '_cluster_analysis' extension 2023-10-12T09:39:04,310 creating build/temp.linux-armv7l-cpython-311 2023-10-12T09:39:04,311 creating build/temp.linux-armv7l-cpython-311/mdapy 2023-10-12T09:39:04,312 creating build/temp.linux-armv7l-cpython-311/mdapy/cluster 2023-10-12T09:39:04,313 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/cluster/_cluster.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -std=c++17 -fvisibility=hidden -g0 2023-10-12T09:39:23,103 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_cluster_analysis.cpython-311-arm-linux-gnueabihf.so 2023-10-12T09:39:23,349 building '_voronoi_analysis' extension 2023-10-12T09:39:23,350 creating build/temp.linux-armv7l-cpython-311/mdapy/voronoi 2023-10-12T09:39:23,350 creating build/temp.linux-armv7l-cpython-311/thirdparty 2023-10-12T09:39:23,351 creating build/temp.linux-armv7l-cpython-311/thirdparty/voro++ 2023-10-12T09:39:23,352 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/voronoi/_voro.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:39:24,708 In file included from thirdparty/voro++/voro++.hh:337, 2023-10-12T09:39:24,708 from mdapy/voronoi/_voro.cpp:6: 2023-10-12T09:39:24,709 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,710 16 | class container_base_2d::iterator : public std::iterator { 2023-10-12T09:39:24,710 | ^~~~~~~~ 2023-10-12T09:39:24,711 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2023-10-12T09:39:24,712 from /usr/include/c++/12/vector:60, 2023-10-12T09:39:24,713 from thirdparty/voro++/common.hh:12, 2023-10-12T09:39:24,714 from thirdparty/voro++/voro++.hh:318: 2023-10-12T09:39:24,714 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,715 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,716 | ^~~~~~~~ 2023-10-12T09:39:24,717 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,717 21 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,718 | ^~~~~~~~ 2023-10-12T09:39:24,719 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,720 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,720 | ^~~~~~~~ 2023-10-12T09:39:24,721 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,722 22 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,722 | ^~~~~~~~ 2023-10-12T09:39:24,723 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,724 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,725 | ^~~~~~~~ 2023-10-12T09:39:24,725 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,726 23 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,727 | ^~~~~~~~ 2023-10-12T09:39:24,728 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,728 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,729 | ^~~~~~~~ 2023-10-12T09:39:24,729 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,730 153 | class container_base_2d::iterator_subset : public std::iterator { 2023-10-12T09:39:24,731 | ^~~~~~~~ 2023-10-12T09:39:24,731 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,732 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,732 | ^~~~~~~~ 2023-10-12T09:39:24,733 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,733 155 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,734 | ^~~~~~~~ 2023-10-12T09:39:24,734 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,735 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,736 | ^~~~~~~~ 2023-10-12T09:39:24,736 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,737 156 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,738 | ^~~~~~~~ 2023-10-12T09:39:24,738 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,739 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,740 | ^~~~~~~~ 2023-10-12T09:39:24,741 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,741 157 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,742 | ^~~~~~~~ 2023-10-12T09:39:24,743 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,744 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,744 | ^~~~~~~~ 2023-10-12T09:39:24,745 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,746 246 | class container_base_2d::iterator_order : public std::iterator { 2023-10-12T09:39:24,746 | ^~~~~~~~ 2023-10-12T09:39:24,747 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,748 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,748 | ^~~~~~~~ 2023-10-12T09:39:24,749 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,750 248 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,751 | ^~~~~~~~ 2023-10-12T09:39:24,752 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,752 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,753 | ^~~~~~~~ 2023-10-12T09:39:24,753 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,754 249 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,754 | ^~~~~~~~ 2023-10-12T09:39:24,755 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,756 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,756 | ^~~~~~~~ 2023-10-12T09:39:24,757 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,757 250 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,758 | ^~~~~~~~ 2023-10-12T09:39:24,758 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,759 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,760 | ^~~~~~~~ 2023-10-12T09:39:24,761 In file included from thirdparty/voro++/voro++.hh:338: 2023-10-12T09:39:24,761 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,762 17 | class container_base_3d::iterator : public std::iterator { 2023-10-12T09:39:24,763 | ^~~~~~~~ 2023-10-12T09:39:24,764 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,764 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,765 | ^~~~~~~~ 2023-10-12T09:39:24,766 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,767 22 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,767 | ^~~~~~~~ 2023-10-12T09:39:24,768 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,769 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,769 | ^~~~~~~~ 2023-10-12T09:39:24,770 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,771 23 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,771 | ^~~~~~~~ 2023-10-12T09:39:24,772 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,773 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,774 | ^~~~~~~~ 2023-10-12T09:39:24,775 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,775 24 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,776 | ^~~~~~~~ 2023-10-12T09:39:24,776 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,777 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,777 | ^~~~~~~~ 2023-10-12T09:39:24,778 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,778 159 | class container_base_3d::iterator_subset : public std::iterator { 2023-10-12T09:39:24,779 | ^~~~~~~~ 2023-10-12T09:39:24,779 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,780 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,781 | ^~~~~~~~ 2023-10-12T09:39:24,781 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,782 161 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,782 | ^~~~~~~~ 2023-10-12T09:39:24,783 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,784 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,784 | ^~~~~~~~ 2023-10-12T09:39:24,785 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,786 162 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,787 | ^~~~~~~~ 2023-10-12T09:39:24,787 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,788 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,789 | ^~~~~~~~ 2023-10-12T09:39:24,790 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,790 163 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,791 | ^~~~~~~~ 2023-10-12T09:39:24,791 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,792 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,793 | ^~~~~~~~ 2023-10-12T09:39:24,793 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,794 252 | class container_base_3d::iterator_order : public std::iterator { 2023-10-12T09:39:24,795 | ^~~~~~~~ 2023-10-12T09:39:24,796 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,797 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,797 | ^~~~~~~~ 2023-10-12T09:39:24,798 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,798 254 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,799 | ^~~~~~~~ 2023-10-12T09:39:24,799 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,800 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,800 | ^~~~~~~~ 2023-10-12T09:39:24,801 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,801 255 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,802 | ^~~~~~~~ 2023-10-12T09:39:24,802 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,803 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,803 | ^~~~~~~~ 2023-10-12T09:39:24,804 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,805 256 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,806 | ^~~~~~~~ 2023-10-12T09:39:24,806 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,807 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,808 | ^~~~~~~~ 2023-10-12T09:39:24,809 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,809 365 | class container_triclinic_base::iterator : public std::iterator 2023-10-12T09:39:24,810 | ^~~~~~~~ 2023-10-12T09:39:24,811 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,812 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,813 | ^~~~~~~~ 2023-10-12T09:39:24,813 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,814 378 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,814 | ^~~~~~~~ 2023-10-12T09:39:24,815 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,816 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,817 | ^~~~~~~~ 2023-10-12T09:39:24,817 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,818 379 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,819 | ^~~~~~~~ 2023-10-12T09:39:24,819 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,820 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,820 | ^~~~~~~~ 2023-10-12T09:39:24,821 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,822 380 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,822 | ^~~~~~~~ 2023-10-12T09:39:24,823 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,823 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,824 | ^~~~~~~~ 2023-10-12T09:39:24,824 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,825 450 | class container_triclinic_base::iterator_order : public std::iterator 2023-10-12T09:39:24,825 | ^~~~~~~~ 2023-10-12T09:39:24,826 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,826 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,827 | ^~~~~~~~ 2023-10-12T09:39:24,827 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,828 458 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:24,829 | ^~~~~~~~ 2023-10-12T09:39:24,830 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,830 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,831 | ^~~~~~~~ 2023-10-12T09:39:24,832 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,833 459 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:24,833 | ^~~~~~~~ 2023-10-12T09:39:24,834 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,835 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,835 | ^~~~~~~~ 2023-10-12T09:39:24,836 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:24,837 460 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:24,837 | ^~~~~~~~ 2023-10-12T09:39:24,838 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:24,839 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:24,839 | ^~~~~~~~ 2023-10-12T09:39:29,437 mdapy/voronoi/_voro.cpp: In function ‘std::tuple >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::vector >, std::vector >, std::allocator > > > > get_cell_info(pybind11::array, pybind11::array, pybind11::array, int)’: 2023-10-12T09:39:29,438 mdapy/voronoi/_voro.cpp:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-12T09:39:29,439 112 | while (j < face_index_vector.size()) 2023-10-12T09:39:29,440 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-12T09:39:45,714 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/voro++/voro++.cc -o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:39:46,883 In file included from thirdparty/voro++/container_2d.cc:10, 2023-10-12T09:39:46,884 from thirdparty/voro++/voro++.cc:10: 2023-10-12T09:39:46,884 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,885 16 | class container_base_2d::iterator : public std::iterator { 2023-10-12T09:39:46,886 | ^~~~~~~~ 2023-10-12T09:39:46,887 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2023-10-12T09:39:46,887 from /usr/include/c++/12/vector:60, 2023-10-12T09:39:46,888 from thirdparty/voro++/cell_2d.hh:11, 2023-10-12T09:39:46,889 from thirdparty/voro++/cell_2d.cc:7, 2023-10-12T09:39:46,890 from thirdparty/voro++/voro++.cc:7: 2023-10-12T09:39:46,890 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,891 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,892 | ^~~~~~~~ 2023-10-12T09:39:46,893 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,893 21 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:46,894 | ^~~~~~~~ 2023-10-12T09:39:46,895 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,895 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,896 | ^~~~~~~~ 2023-10-12T09:39:46,897 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,897 22 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:46,898 | ^~~~~~~~ 2023-10-12T09:39:46,899 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,899 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,900 | ^~~~~~~~ 2023-10-12T09:39:46,901 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,901 23 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:46,902 | ^~~~~~~~ 2023-10-12T09:39:46,902 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,903 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,903 | ^~~~~~~~ 2023-10-12T09:39:46,904 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,904 153 | class container_base_2d::iterator_subset : public std::iterator { 2023-10-12T09:39:46,905 | ^~~~~~~~ 2023-10-12T09:39:46,905 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,906 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,906 | ^~~~~~~~ 2023-10-12T09:39:46,907 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,907 155 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:46,908 | ^~~~~~~~ 2023-10-12T09:39:46,909 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,910 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,910 | ^~~~~~~~ 2023-10-12T09:39:46,911 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,912 156 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:46,913 | ^~~~~~~~ 2023-10-12T09:39:46,913 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,914 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,915 | ^~~~~~~~ 2023-10-12T09:39:46,915 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,916 157 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:46,917 | ^~~~~~~~ 2023-10-12T09:39:46,917 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,918 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,918 | ^~~~~~~~ 2023-10-12T09:39:46,919 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,920 246 | class container_base_2d::iterator_order : public std::iterator { 2023-10-12T09:39:46,921 | ^~~~~~~~ 2023-10-12T09:39:46,922 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,922 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,923 | ^~~~~~~~ 2023-10-12T09:39:46,923 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,924 248 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:46,924 | ^~~~~~~~ 2023-10-12T09:39:46,925 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,925 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,926 | ^~~~~~~~ 2023-10-12T09:39:46,926 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,927 249 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:46,927 | ^~~~~~~~ 2023-10-12T09:39:46,928 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,928 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,929 | ^~~~~~~~ 2023-10-12T09:39:46,930 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:46,930 250 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:46,931 | ^~~~~~~~ 2023-10-12T09:39:46,932 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:46,932 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:46,933 | ^~~~~~~~ 2023-10-12T09:39:47,028 In file included from thirdparty/voro++/container_3d.cc:10, 2023-10-12T09:39:47,029 from thirdparty/voro++/voro++.cc:11: 2023-10-12T09:39:47,029 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,030 17 | class container_base_3d::iterator : public std::iterator { 2023-10-12T09:39:47,031 | ^~~~~~~~ 2023-10-12T09:39:47,032 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,032 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,033 | ^~~~~~~~ 2023-10-12T09:39:47,033 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,034 22 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:47,035 | ^~~~~~~~ 2023-10-12T09:39:47,035 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,036 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,037 | ^~~~~~~~ 2023-10-12T09:39:47,038 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,038 23 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:47,039 | ^~~~~~~~ 2023-10-12T09:39:47,040 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,040 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,041 | ^~~~~~~~ 2023-10-12T09:39:47,041 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,042 24 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:47,042 | ^~~~~~~~ 2023-10-12T09:39:47,043 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,043 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,044 | ^~~~~~~~ 2023-10-12T09:39:47,044 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,045 159 | class container_base_3d::iterator_subset : public std::iterator { 2023-10-12T09:39:47,045 | ^~~~~~~~ 2023-10-12T09:39:47,046 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,047 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,047 | ^~~~~~~~ 2023-10-12T09:39:47,048 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,049 161 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:47,050 | ^~~~~~~~ 2023-10-12T09:39:47,050 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,051 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,052 | ^~~~~~~~ 2023-10-12T09:39:47,052 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,053 162 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:47,054 | ^~~~~~~~ 2023-10-12T09:39:47,054 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,055 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,056 | ^~~~~~~~ 2023-10-12T09:39:47,056 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,057 163 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:47,058 | ^~~~~~~~ 2023-10-12T09:39:47,058 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,059 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,060 | ^~~~~~~~ 2023-10-12T09:39:47,061 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,061 252 | class container_base_3d::iterator_order : public std::iterator { 2023-10-12T09:39:47,062 | ^~~~~~~~ 2023-10-12T09:39:47,062 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,063 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,063 | ^~~~~~~~ 2023-10-12T09:39:47,064 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,064 254 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:47,065 | ^~~~~~~~ 2023-10-12T09:39:47,065 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,066 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,067 | ^~~~~~~~ 2023-10-12T09:39:47,067 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,068 255 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:47,068 | ^~~~~~~~ 2023-10-12T09:39:47,069 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,070 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,070 | ^~~~~~~~ 2023-10-12T09:39:47,071 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,072 256 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:47,072 | ^~~~~~~~ 2023-10-12T09:39:47,073 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,074 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,075 | ^~~~~~~~ 2023-10-12T09:39:47,076 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,076 365 | class container_triclinic_base::iterator : public std::iterator 2023-10-12T09:39:47,077 | ^~~~~~~~ 2023-10-12T09:39:47,077 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,078 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,079 | ^~~~~~~~ 2023-10-12T09:39:47,079 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,080 378 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:47,081 | ^~~~~~~~ 2023-10-12T09:39:47,081 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,082 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,083 | ^~~~~~~~ 2023-10-12T09:39:47,084 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,084 379 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:47,085 | ^~~~~~~~ 2023-10-12T09:39:47,085 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,086 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,086 | ^~~~~~~~ 2023-10-12T09:39:47,087 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,087 380 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:47,088 | ^~~~~~~~ 2023-10-12T09:39:47,088 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,089 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,089 | ^~~~~~~~ 2023-10-12T09:39:47,090 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,091 450 | class container_triclinic_base::iterator_order : public std::iterator 2023-10-12T09:39:47,091 | ^~~~~~~~ 2023-10-12T09:39:47,092 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,093 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,093 | ^~~~~~~~ 2023-10-12T09:39:47,094 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,095 458 | typedef typename std::iterator::pointer pointer; 2023-10-12T09:39:47,096 | ^~~~~~~~ 2023-10-12T09:39:47,096 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,097 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,098 | ^~~~~~~~ 2023-10-12T09:39:47,098 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,099 459 | typedef typename std::iterator::reference reference; 2023-10-12T09:39:47,100 | ^~~~~~~~ 2023-10-12T09:39:47,100 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,101 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,102 | ^~~~~~~~ 2023-10-12T09:39:47,102 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-10-12T09:39:47,103 460 | typedef typename std::iterator::difference_type difference_type; 2023-10-12T09:39:47,104 | ^~~~~~~~ 2023-10-12T09:39:47,105 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-10-12T09:39:47,105 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-10-12T09:39:47,106 | ^~~~~~~~ 2023-10-12T09:40:14,064 In file included from /usr/include/c++/12/vector:70: 2023-10-12T09:40:14,065 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-10-12T09:40:14,065 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-12T09:40:14,066 439 | vector<_Tp, _Alloc>:: 2023-10-12T09:40:14,066 | ^~~~~~~~~~~~~~~~~~~ 2023-10-12T09:40:25,143 In file included from /usr/include/c++/12/vector:64: 2023-10-12T09:40:25,143 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-10-12T09:40:25,144 inlined from ‘void voro::unitcell::images(std::vector&, std::vector&)’ at thirdparty/voro++/unitcell.cc:147:25: 2023-10-12T09:40:25,145 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-12T09:40:25,145 1287 | _M_realloc_insert(end(), __x); 2023-10-12T09:40:25,146 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-12T09:40:25,610 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so -fopenmp 2023-10-12T09:40:25,928 building '_ptm' extension 2023-10-12T09:40:25,929 creating build/temp.linux-armv7l-cpython-311/mdapy/ptm 2023-10-12T09:40:25,929 creating build/temp.linux-armv7l-cpython-311/thirdparty/ptm 2023-10-12T09:40:25,930 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/ptm/_ptm.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:31,833 mdapy/ptm/_ptm.cpp: In function ‘void get_ptm(char*, double_py, int_py, pybind11::array_t, pybind11::array_t, pybind11::array_t, double, pybind11::array)’: 2023-10-12T09:40:31,834 mdapy/ptm/_ptm.cpp:102:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 2023-10-12T09:40:31,835 102 | bool found = false; 2023-10-12T09:40:31,835 | ^~~~~ 2023-10-12T09:40:45,965 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_alloy_types.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:47,135 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_canonical_coloured.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:47,772 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_constants.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:47,856 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_convex_hull_incremental.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:48,938 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_deformation_gradient.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:49,782 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:50,091 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_tools.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:50,607 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_index.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:51,769 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_initialize_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:52,517 thirdparty/ptm/ptm_initialize_data.cpp: In function ‘int initialize_graphs(const ptm::refdata_t*, int8_t*)’: 2023-10-12T09:40:52,518 thirdparty/ptm/ptm_initialize_data.cpp:34:21: warning: unused variable ‘_max_degree’ [-Wunused-variable] 2023-10-12T09:40:52,519 34 | int _max_degree = ptm::graph_degree(s->num_facets, s->graphs[i].facets, s->num_nbrs, degree); 2023-10-12T09:40:52,519 | ^~~~~~~~~~~ 2023-10-12T09:40:52,742 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_neighbour_ordering.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:55,305 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_normalize_vertices.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:56,055 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_polar.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:57,205 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_quat.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:58,267 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_structure_matcher.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:40:59,607 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_voronoi_cell.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-10-12T09:41:03,795 In file included from /usr/include/c++/12/vector:70, 2023-10-12T09:41:03,796 from thirdparty/ptm/ptm_voronoi_cell.h:59, 2023-10-12T09:41:03,797 from thirdparty/ptm/ptm_voronoi_cell.cpp:59: 2023-10-12T09:41:03,797 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-10-12T09:41:03,798 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-12T09:41:03,799 439 | vector<_Tp, _Alloc>:: 2023-10-12T09:41:03,799 | ^~~~~~~~~~~~~~~~~~~ 2023-10-12T09:41:03,864 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-10-12T09:41:03,864 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-10-12T09:41:03,865 inlined from ‘void ptm_voro::voronoicell_base::face_areas(std::vector&)’ at thirdparty/ptm/ptm_voronoi_cell.cpp:1251:36: 2023-10-12T09:41:03,866 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-12T09:41:03,867 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-12T09:41:03,868 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-12T09:41:04,077 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_ptm.cpython-311-arm-linux-gnueabihf.so -fopenmp 2023-10-12T09:41:04,370 building '_rdf' extension 2023-10-12T09:41:04,371 creating build/temp.linux-armv7l-cpython-311/mdapy/rdf 2023-10-12T09:41:04,371 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/rdf/_rdf.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/rdf/_rdf.o -std=c++17 -fvisibility=hidden -g0 2023-10-12T09:41:22,922 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/rdf/_rdf.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_rdf.cpython-311-arm-linux-gnueabihf.so 2023-10-12T09:41:23,166 building '_neigh' extension 2023-10-12T09:41:23,168 creating build/temp.linux-armv7l-cpython-311/mdapy/neigh 2023-10-12T09:41:23,168 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8rmcjtu_/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/neigh/_neigh.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/neigh/_neigh.o -std=c++17 -fvisibility=hidden -g0 2023-10-12T09:41:41,916 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/neigh/_neigh.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_neigh.cpython-311-arm-linux-gnueabihf.so 2023-10-12T09:41:42,177 installing to build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,178 running install 2023-10-12T09:41:42,201 running install_lib 2023-10-12T09:41:42,209 creating build/bdist.linux-armv7l 2023-10-12T09:41:42,209 creating build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,210 copying build/lib.linux-armv7l-cpython-311/_neigh.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,217 copying build/lib.linux-armv7l-cpython-311/_ptm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,225 copying build/lib.linux-armv7l-cpython-311/_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,236 copying build/lib.linux-armv7l-cpython-311/_cluster_analysis.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,241 creating build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,242 copying build/lib.linux-armv7l-cpython-311/mdapy/pigz.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,244 copying build/lib.linux-armv7l-cpython-311/mdapy/nearest_neighbor.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,246 copying build/lib.linux-armv7l-cpython-311/mdapy/plotset.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,248 copying build/lib.linux-armv7l-cpython-311/mdapy/entropy.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,250 copying build/lib.linux-armv7l-cpython-311/mdapy/eam_generate.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,253 copying build/lib.linux-armv7l-cpython-311/mdapy/calculator.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,255 copying build/lib.linux-armv7l-cpython-311/mdapy/replicate.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,257 copying build/lib.linux-armv7l-cpython-311/mdapy/common_neighbor_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,259 copying build/lib.linux-armv7l-cpython-311/mdapy/timer.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,261 copying build/lib.linux-armv7l-cpython-311/mdapy/steinhardt_bond_orientation.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,263 copying build/lib.linux-armv7l-cpython-311/mdapy/eam_average.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,265 copying build/lib.linux-armv7l-cpython-311/mdapy/mean_squared_displacement.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,267 copying build/lib.linux-armv7l-cpython-311/mdapy/cluser_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,269 copying build/lib.linux-armv7l-cpython-311/mdapy/create_polycrystalline.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,271 copying build/lib.linux-armv7l-cpython-311/mdapy/load_save_data.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,274 copying build/lib.linux-armv7l-cpython-311/mdapy/temperature.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,276 copying build/lib.linux-armv7l-cpython-311/mdapy/tool_function.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,278 copying build/lib.linux-armv7l-cpython-311/mdapy/identify_SFs_TBs.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,280 copying build/lib.linux-armv7l-cpython-311/mdapy/polyhedral_template_matching.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,282 copying build/lib.linux-armv7l-cpython-311/mdapy/spatial_binning.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,284 copying build/lib.linux-armv7l-cpython-311/mdapy/void_distribution.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,286 copying build/lib.linux-armv7l-cpython-311/mdapy/__init__.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,288 copying build/lib.linux-armv7l-cpython-311/mdapy/voronoi_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,290 copying build/lib.linux-armv7l-cpython-311/mdapy/lindemann_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,293 copying build/lib.linux-armv7l-cpython-311/mdapy/system.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,296 copying build/lib.linux-armv7l-cpython-311/mdapy/common_neighbor_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,298 copying build/lib.linux-armv7l-cpython-311/mdapy/lattice_maker.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,300 copying build/lib.linux-armv7l-cpython-311/mdapy/centro_symmetry_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,303 copying build/lib.linux-armv7l-cpython-311/mdapy/warren_cowley_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,305 copying build/lib.linux-armv7l-cpython-311/mdapy/potential.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,307 copying build/lib.linux-armv7l-cpython-311/mdapy/ackland_jones_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,310 copying build/lib.linux-armv7l-cpython-311/mdapy/pair_distribution.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,312 copying build/lib.linux-armv7l-cpython-311/mdapy/neighbor.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-10-12T09:41:42,314 copying build/lib.linux-armv7l-cpython-311/_rdf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,319 running install_egg_info 2023-10-12T09:41:42,330 running egg_info 2023-10-12T09:41:42,334 writing mdapy.egg-info/PKG-INFO 2023-10-12T09:41:42,338 writing dependency_links to mdapy.egg-info/dependency_links.txt 2023-10-12T09:41:42,339 writing requirements to mdapy.egg-info/requires.txt 2023-10-12T09:41:42,340 writing top-level names to mdapy.egg-info/top_level.txt 2023-10-12T09:41:42,358 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2023-10-12T09:41:42,380 adding license file 'LICENSE' 2023-10-12T09:41:42,387 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2023-10-12T09:41:42,389 Copying mdapy.egg-info to build/bdist.linux-armv7l/wheel/mdapy-0.9.2-py3.11.egg-info 2023-10-12T09:41:42,402 running install_scripts 2023-10-12T09:41:42,450 creating build/bdist.linux-armv7l/wheel/mdapy-0.9.2.dist-info/WHEEL 2023-10-12T09:41:42,452 creating '/tmp/pip-wheel-ycnhhhvk/.tmp-t04qxm_m/mdapy-0.9.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-12T09:41:42,480 adding '_cluster_analysis.cpython-311-arm-linux-gnueabihf.so' 2023-10-12T09:41:42,508 adding '_neigh.cpython-311-arm-linux-gnueabihf.so' 2023-10-12T09:41:42,557 adding '_ptm.cpython-311-arm-linux-gnueabihf.so' 2023-10-12T09:41:42,587 adding '_rdf.cpython-311-arm-linux-gnueabihf.so' 2023-10-12T09:41:42,696 adding '_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so' 2023-10-12T09:41:42,703 adding 'mdapy/__init__.py' 2023-10-12T09:41:42,705 adding 'mdapy/ackland_jones_analysis.py' 2023-10-12T09:41:42,707 adding 'mdapy/calculator.py' 2023-10-12T09:41:42,709 adding 'mdapy/centro_symmetry_parameter.py' 2023-10-12T09:41:42,711 adding 'mdapy/cluser_analysis.py' 2023-10-12T09:41:42,713 adding 'mdapy/common_neighbor_analysis.py' 2023-10-12T09:41:42,715 adding 'mdapy/common_neighbor_parameter.py' 2023-10-12T09:41:42,718 adding 'mdapy/create_polycrystalline.py' 2023-10-12T09:41:42,720 adding 'mdapy/eam_average.py' 2023-10-12T09:41:42,722 adding 'mdapy/eam_generate.py' 2023-10-12T09:41:42,724 adding 'mdapy/entropy.py' 2023-10-12T09:41:42,726 adding 'mdapy/identify_SFs_TBs.py' 2023-10-12T09:41:42,728 adding 'mdapy/lattice_maker.py' 2023-10-12T09:41:42,730 adding 'mdapy/lindemann_parameter.py' 2023-10-12T09:41:42,732 adding 'mdapy/load_save_data.py' 2023-10-12T09:41:42,734 adding 'mdapy/mean_squared_displacement.py' 2023-10-12T09:41:42,736 adding 'mdapy/nearest_neighbor.py' 2023-10-12T09:41:42,738 adding 'mdapy/neighbor.py' 2023-10-12T09:41:42,740 adding 'mdapy/pair_distribution.py' 2023-10-12T09:41:42,742 adding 'mdapy/pigz.py' 2023-10-12T09:41:42,744 adding 'mdapy/plotset.py' 2023-10-12T09:41:42,745 adding 'mdapy/polyhedral_template_matching.py' 2023-10-12T09:41:42,747 adding 'mdapy/potential.py' 2023-10-12T09:41:42,749 adding 'mdapy/replicate.py' 2023-10-12T09:41:42,751 adding 'mdapy/spatial_binning.py' 2023-10-12T09:41:42,754 adding 'mdapy/steinhardt_bond_orientation.py' 2023-10-12T09:41:42,762 adding 'mdapy/system.py' 2023-10-12T09:41:42,764 adding 'mdapy/temperature.py' 2023-10-12T09:41:42,766 adding 'mdapy/timer.py' 2023-10-12T09:41:42,767 adding 'mdapy/tool_function.py' 2023-10-12T09:41:42,769 adding 'mdapy/void_distribution.py' 2023-10-12T09:41:42,771 adding 'mdapy/voronoi_analysis.py' 2023-10-12T09:41:42,773 adding 'mdapy/warren_cowley_parameter.py' 2023-10-12T09:41:42,775 adding 'mdapy-0.9.2.dist-info/LICENSE' 2023-10-12T09:41:42,777 adding 'mdapy-0.9.2.dist-info/METADATA' 2023-10-12T09:41:42,778 adding 'mdapy-0.9.2.dist-info/WHEEL' 2023-10-12T09:41:42,779 adding 'mdapy-0.9.2.dist-info/top_level.txt' 2023-10-12T09:41:42,780 adding 'mdapy-0.9.2.dist-info/RECORD' 2023-10-12T09:41:42,787 removing build/bdist.linux-armv7l/wheel 2023-10-12T09:41:42,889 Building wheel for mdapy (pyproject.toml): finished with status 'done' 2023-10-12T09:41:42,909 Created wheel for mdapy: filename=mdapy-0.9.2-cp311-cp311-linux_armv7l.whl size=626656 sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 2023-10-12T09:41:42,910 Stored in directory: /tmp/pip-ephem-wheel-cache-gh89gy9a/wheels/0f/fa/53/62e30d838ac3e427aa667c620080be86a99e26140ec43d7770 2023-10-12T09:41:42,924 Successfully built mdapy 2023-10-12T09:41:42,944 Removed build tracker: '/tmp/pip-build-tracker-axdnv70c'